Citrus Sinensis ID: 026688

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQN
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEEEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHcccccHHHccccHHHHHHHccccccccccccccHHHHHHHHHHHHcHccccEEEEEcccccHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHccccccccEEEEEccccccccccccccEEEEEEEEcccccHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccEEEEEEEEccEEEEEEcccccc
Coil and Loop (DISEMBL)
mtaasgskdygelmspateffrmpFMSFIYErgwrqnfvwggfpgpeKEFELMKGYlkpvlggniidascgsglfsRIFAKSGLFSLVVALDYSENMLKQCYEFVQqesnfpkenfLLVRadisrlpfasssidAVHAGAaihcwsspstgvaeisrvlrpggvfvgttyivdgpfnlipfSRLLRQNMMQISGSYTFLSEREIEDLCRAcglvdfkctrnrgfvmftatkpsqn
Flexible Loop (DISEMBL)
mtaasgskdygelmspatEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQN
Low Complexity Region (SEG)
MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQN
Disordered region (IsUnstruct)
****************ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFT*******
Disordered Region (DISOPRED)
***************PATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS**
Disordered Region (DISEMBL)
*********YGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQN
Disordered Region (DISPRO)
*T**SGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q8LBV4	355	Uncharacterized methyltra	yes	no	0.991	0.656	0.705	1e-98
Q0WPT7	352	Uncharacterized methyltra	no	no	0.970	0.647	0.523	2e-66
E4QJB8	296	Malonyl-CoA O-methyltrans	yes	no	0.595	0.472	0.333	2e-09
E3G327	251	Malonyl-CoA O-methyltrans	yes	no	0.429	0.402	0.360	8e-09
Q24W96	253	Demethylmenaquinone methy	yes	no	0.527	0.490	0.298	2e-08
Q2YY85	241	Demethylmenaquinone methy	yes	no	0.476	0.464	0.328	3e-08
P67063	241	Demethylmenaquinone methy	yes	no	0.476	0.464	0.328	4e-08
A8Z450	241	Demethylmenaquinone methy	yes	no	0.476	0.464	0.328	4e-08
Q6G992	241	Demethylmenaquinone methy	yes	no	0.476	0.464	0.328	4e-08
P67062	241	Demethylmenaquinone methy	yes	no	0.476	0.464	0.328	4e-08

>sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1

 Score =  358 bits (920), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 165/234 (70%), Positives = 196/234 (83%), Gaps = 1/234 (0%)

Query: 1   MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 60
           +  ASGSK Y E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPV
Sbjct: 122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181

Query: 61  LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLV 119
           LGGNIIDASCGSG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP KE  +LV
Sbjct: 182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241

Query: 120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179
           RADI+RLPF S S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ I
Sbjct: 242 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFI 301

Query: 180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 233
           PF + LRQ +M+ SGS+ FL+ERE+ED+C+ACGLV+F   RN  F+M +ATKPS
Sbjct: 302 PFLKNLRQEIMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKPS 355

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/233 (52%), Positives = 161/233 (69%), Gaps = 5/233 (2%)

Query: 1   MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 60
           +T  +   DY E+    TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K  
Sbjct: 124 LTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEA 183

Query: 61  LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLV 119
            GG ++D SCGSGLFSR FA+SG +S V+ALDYSENML+QC EF++ ++ F    N  +V
Sbjct: 184 EGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVV 243

Query: 120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179
           RAD+SRLPF S S+DAVHAGAA+HCW SP+  +AEI RVLR GGVFVGTT++   P    
Sbjct: 244 RADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGGVFVGTTFLRYSPST-- 301

Query: 180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 232
           P+  ++R    +I  SY +L + EI+D+C +CGL D++      F+MFTA KP
Sbjct: 302 PW--IIRPFQSRILQSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMFTARKP 352

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|E4QJB8|BIOC_METS6 Malonyl-CoA O-methyltransferase BioC OS=Methylovorus sp. (strain MP688) GN=bioC PE=3 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 65  IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ---CYEFVQQESNFPKENFLLVRA 121
           ++DA CG+G  S   +     S V++LD +  MLK+       VQ+   F + +   V A
Sbjct: 52  VLDAGCGTGHASAALSARYRQSQVISLDIAMGMLKKTMAARSLVQRLFGFDRRH--AVCA 109

Query: 122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 181
           DI RLP A++SID V +  AI   +       EI RVL+P G+ + +T    GP  L   
Sbjct: 110 DIERLPLAAASIDLVWSNMAIQWCNDLDQAFGEIQRVLKPEGLLMFSTL---GPDTLKEL 166

Query: 182 SRLLRQNMMQISGSYTFLSEREIED-LCRA 210
               RQ+   ++ S  F+   +I D L RA
Sbjct: 167 RAATRQDNTHVTVS-RFIDMHDIGDALVRA 195

Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.

Methylovorus sp. (strain MP688) (taxid: 887061)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 7

>sp|E3G327|BIOC_ENTCS Malonyl-CoA O-methyltransferase BioC OS=Enterobacter cloacae (strain SCF1) GN=bioC PE=3 SV=1

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 63  GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122
             ++DA CG G  SR +  +G    V ALD S  ML +     QQ ++        V+AD
Sbjct: 44  ARVLDAGCGPGGISRYWRDNGCE--VTALDLSAQMLAEARR--QQAADH------YVQAD 93

Query: 123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173
           I  +P AS+  D V +  A+    S    V E+ R+LRPGGV   TT   D
Sbjct: 94  IEAIPLASAQFDLVWSNLAVQWCDSLQDAVQELYRMLRPGGVLAFTTLAAD 144

Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.

Enterobacter cloacae (strain SCF1) (taxid: 701347)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 7

>sp|Q24W96|UBIE_DESHY Demethylmenaquinone methyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=ubiE PE=3 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 20/144 (13%)

Query: 25  FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-G 83
            MSF  ++GWR+  V      P               G  ++D  CG+   S   A + G
Sbjct: 43  LMSFGLDKGWRKKAVQTVEAKP---------------GMTMVDICCGTAQLSLELAMTVG 87

Query: 84  LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVHAGAAI 142
               +  LD+SENMLK+  E +   +  P  + + +R  D   LPFA +S D    G  +
Sbjct: 88  EQGQITGLDFSENMLKKAQENL---AGSPYRSIIELRQGDAMNLPFADNSFDGATVGWGL 144

Query: 143 HCWSSPSTGVAEISRVLRPGGVFV 166
                   GV E+ RV++PGG+ V
Sbjct: 145 RNLPDLEKGVQEMIRVVKPGGMVV 168

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q2YY85|UBIE_STAAB Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ubiE PE=3 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 50  FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 101
           FE  K + K V+       G   +D  CG+G ++   +K+ G    V  +D+SENML+  
Sbjct: 31  FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88

Query: 102 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 161
              V +E     EN  LV  D   LPF  +S D V  G  +         + E++RVL+P
Sbjct: 89  ---VGKEKTASMENVKLVHGDAMELPFGDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145

Query: 162 GGVFV 166
           GG+ V
Sbjct: 146 GGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|P67063|UBIE_STAAW Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MW2) GN=ubiE PE=3 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 50  FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 101
           FE  K + K V+       G   +D  CG+G ++   +K+ G    V  +D+SENML+  
Sbjct: 31  FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88

Query: 102 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 161
              V +E     EN  LV  D   LPF  +S D V  G  +         + E++RVL+P
Sbjct: 89  ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145

Query: 162 GGVFV 166
           GG+ V
Sbjct: 146 GGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|A8Z450|UBIE_STAAT Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ubiE PE=3 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 50  FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 101
           FE  K + K V+       G   +D  CG+G ++   +K+ G    V  +D+SENML+  
Sbjct: 31  FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88

Query: 102 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 161
              V +E     EN  LV  D   LPF  +S D V  G  +         + E++RVL+P
Sbjct: 89  ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145

Query: 162 GGVFV 166
           GG+ V
Sbjct: 146 GGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q6G992|UBIE_STAAS Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=ubiE PE=3 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 50  FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 101
           FE  K + K V+       G   +D  CG+G ++   +K+ G    V  +D+SENML+  
Sbjct: 31  FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88

Query: 102 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 161
              V +E     EN  LV  D   LPF  +S D V  G  +         + E++RVL+P
Sbjct: 89  ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145

Query: 162 GGVFV 166
           GG+ V
Sbjct: 146 GGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|P67062|UBIE_STAAN Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain N315) GN=ubiE PE=1 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 50  FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 101
           FE  K + K V+       G   +D  CG+G ++   +K+ G    V  +D+SENML+  
Sbjct: 31  FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88

Query: 102 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 161
              V +E     EN  LV  D   LPF  +S D V  G  +         + E++RVL+P
Sbjct: 89  ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145

Query: 162 GGVFV 166
           GG+ V
Sbjct: 146 GGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain N315) (taxid: 158879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
356508108	352	PREDICTED: uncharacterized methyltransfe	0.991	0.661	0.782	1e-107
388517893	352	unknown [Lotus japonicus]	0.987	0.659	0.776	1e-106
224066941	293	predicted protein [Populus trichocarpa]	0.991	0.795	0.768	1e-105
224082138	244	predicted protein [Populus trichocarpa]	0.987	0.950	0.781	1e-105
225459328	350	PREDICTED: uncharacterized methyltransfe	0.991	0.665	0.755	1e-103
255545696	351	S-adenosylmethionine-dependent methyltra	0.987	0.660	0.732	5e-99
297842589	352	predicted protein [Arabidopsis lyrata su	0.991	0.661	0.713	4e-97
18411840	355	S-adenosyl-L-methionine-dependent methyl	0.991	0.656	0.705	8e-97
356518483	248	PREDICTED: uncharacterized methyltransfe	0.902	0.854	0.793	3e-96
449437246	313	PREDICTED: uncharacterized methyltransfe	0.974	0.731	0.708	1e-93

>gi|356508108|ref|XP_003522802.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Glycine max]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/234 (78%), Positives = 205/234 (87%), Gaps = 1/234 (0%)

Query: 1   MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKP 59
           +TA  G+K YGE M  +TE FR+P +SF+YERGWRQ F VWGGFPGPEKEFELMKG+LKP
Sbjct: 119 LTATGGAKSYGESMPASTELFRVPLISFLYERGWRQTFSVWGGFPGPEKEFELMKGFLKP 178

Query: 60  VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 119
           +LGGNIIDASC SGLFSR+FAKSGLFS +VALDYSENML+QCYEF+QQE NFPKENF+LV
Sbjct: 179 ILGGNIIDASCASGLFSRLFAKSGLFSFIVALDYSENMLQQCYEFIQQEENFPKENFILV 238

Query: 120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179
           RADISRLPF SSS+DAVHAGAA+HCW SP   VAEISRVLRPGGVFV TTYI+DGPF++I
Sbjct: 239 RADISRLPFVSSSVDAVHAGAALHCWPSPLAAVAEISRVLRPGGVFVATTYILDGPFSVI 298

Query: 180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 233
           PF   LRQN+ Q+SGSY FLSERE+EDLCRACGLV FKC RN  FVM +ATKPS
Sbjct: 299 PFLSSLRQNVRQVSGSYIFLSERELEDLCRACGLVGFKCIRNGLFVMISATKPS 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517893|gb|AFK47008.1| unknown [Lotus japonicus]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/233 (77%), Positives = 203/233 (87%), Gaps = 1/233 (0%)

Query: 1   MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKP 59
           +TA SG+K+YG+LM  +TE FR+P +SF+YERGWRQ F VWGGFPGPEKEFELMKG+L P
Sbjct: 119 LTATSGAKNYGDLMPASTELFRVPLISFLYERGWRQTFSVWGGFPGPEKEFELMKGFLNP 178

Query: 60  VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 119
           VLGGNIIDASC SGLFSR+FAKSGLFSLVVALDYSENML QCYEF+QQE NFPKENF+LV
Sbjct: 179 VLGGNIIDASCASGLFSRLFAKSGLFSLVVALDYSENMLAQCYEFIQQEDNFPKENFILV 238

Query: 120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179
           RADI+RLPF +SS+DAVHAGAA+HCW SPS  VAEISRVLRPGGVFV TTYI+DGPF  +
Sbjct: 239 RADIARLPFVTSSVDAVHAGAALHCWPSPSAVVAEISRVLRPGGVFVATTYILDGPFTFV 298

Query: 180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 232
           PF   +RQN+ Q SGSY FLSERE+EDLCRACGLV FKC RN  FVM +A KP
Sbjct: 299 PFLSTVRQNIRQASGSYIFLSERELEDLCRACGLVGFKCIRNGPFVMISAAKP 351

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066941|ref|XP_002302290.1| predicted protein [Populus trichocarpa] gi|222844016|gb|EEE81563.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/233 (76%), Positives = 202/233 (86%)

Query: 1   MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 60
           +T ASGSK Y + M  ATEFFR PF+SF+YERGWRQNFVWGGFPGPE EFE+MK YLKPV
Sbjct: 61  LTVASGSKAYDDAMPMATEFFRTPFISFLYERGWRQNFVWGGFPGPEMEFEMMKDYLKPV 120

Query: 61  LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120
           LGGNI+DASCGSGLFSR+FAKSGLFSLV ALDYSENMLKQCYEF++QE NFPKEN +LVR
Sbjct: 121 LGGNILDASCGSGLFSRLFAKSGLFSLVTALDYSENMLKQCYEFIKQEENFPKENLILVR 180

Query: 121 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 180
           ADI+RLPF S S+DAVHAGAAIHCW SPS  VAE+SRVLRPGGVFV TTYI+DGPF+ IP
Sbjct: 181 ADIARLPFVSGSLDAVHAGAAIHCWPSPSAAVAEVSRVLRPGGVFVATTYILDGPFSFIP 240

Query: 181 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 233
           F + + Q   Q SG+  FLSERE+E +CRACGLV+F CTRNR F+MF+ATKPS
Sbjct: 241 FLKPISQRFTQASGNNFFLSERELEAVCRACGLVNFTCTRNRQFIMFSATKPS 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082138|ref|XP_002306578.1| predicted protein [Populus trichocarpa] gi|222856027|gb|EEE93574.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/233 (78%), Positives = 204/233 (87%), Gaps = 1/233 (0%)

Query: 1   MTAASGSKDYGELMSP-ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKP 59
           +T ASGSK YG++  P ATEFFR PFMSF+YERGWRQNFVWGGFPGPEKEFELMK YLKP
Sbjct: 11  LTVASGSKGYGDIAMPLATEFFRTPFMSFLYERGWRQNFVWGGFPGPEKEFELMKDYLKP 70

Query: 60  VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 119
           VLGGNI+DASCGSGLFSR+F KSGLFSLV+ALDYSENML+QCYEF++QE NFPKEN +LV
Sbjct: 71  VLGGNILDASCGSGLFSRLFTKSGLFSLVMALDYSENMLQQCYEFIKQEENFPKENLILV 130

Query: 120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179
           RADI+RLPF S S+DAV AGAAIHCW SPS  VAE+SRVLRPGGVFV TTYI+DG F+LI
Sbjct: 131 RADIARLPFISGSLDAVPAGAAIHCWPSPSVAVAEVSRVLRPGGVFVATTYILDGHFSLI 190

Query: 180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 232
           PF + + Q   Q+SGS  FLSERE+ED+CRACGLVDF CTRN  FVMF+ATKP
Sbjct: 191 PFLKPISQRFTQVSGSNIFLSERELEDVCRACGLVDFTCTRNGRFVMFSATKP 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459328|ref|XP_002285799.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Vitis vinifera] gi|302141946|emb|CBI19149.3| unnamed protein product [Vitis vinifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/233 (75%), Positives = 203/233 (87%)

Query: 1   MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 60
           +T A+G+K+Y E M  ATE FR P +SF+YERGWRQNF+WGGFPG EKEFEL KGYLKPV
Sbjct: 118 LTVATGAKEYDESMPAATEIFRTPLISFLYERGWRQNFIWGGFPGLEKEFELAKGYLKPV 177

Query: 61  LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120
           LGG I+DASCGSGLFSR FAKSGLFSLVVALD+SENML+QCYEF++QE  FPKEN LLVR
Sbjct: 178 LGGTIVDASCGSGLFSRTFAKSGLFSLVVALDFSENMLRQCYEFIKQEEGFPKENILLVR 237

Query: 121 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 180
           ADISRLPFASSS+DAVHAGAA+HCW SPS  VAEISRVLRPGGVFV TTY++DGPF+++P
Sbjct: 238 ADISRLPFASSSVDAVHAGAALHCWPSPSIAVAEISRVLRPGGVFVATTYLLDGPFSVLP 297

Query: 181 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 233
           F + LRQNM++++GS+ FLSERE+EDLC ACGL  F C RN  FVM +ATKPS
Sbjct: 298 FLKTLRQNMVRVAGSHAFLSERELEDLCTACGLGGFTCVRNGRFVMISATKPS 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545696|ref|XP_002513908.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223546994|gb|EEF48491.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  366 bits (939), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 170/232 (73%), Positives = 195/232 (84%)

Query: 1   MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 60
           +T ASG+  Y + M  ATEFFR+  +SF+YERGWRQNF+WGGFPGPEKEFEL+K YLKPV
Sbjct: 119 LTVASGASKYDDAMPLATEFFRLSLISFLYERGWRQNFIWGGFPGPEKEFELIKDYLKPV 178

Query: 61  LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120
           LGGNIIDASCGSGLFSR+FAKSGLFSLVVALDYSENML+QCY+F++QE NFP EN + VR
Sbjct: 179 LGGNIIDASCGSGLFSRLFAKSGLFSLVVALDYSENMLQQCYDFIKQEENFPTENLISVR 238

Query: 121 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 180
           ADISRLPF   S+DAVHAGAAIHCW SPS  VAEISRVLRPGGVFV +T+I+DGPF+ +P
Sbjct: 239 ADISRLPFLFGSVDAVHAGAAIHCWPSPSAAVAEISRVLRPGGVFVASTFILDGPFSFVP 298

Query: 181 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 232
               LRQN+ QISGS  FL E E+ED+CRACGLV F   R+R FVMF+A KP
Sbjct: 299 LMGPLRQNIAQISGSQIFLREYELEDICRACGLVGFTAIRDRQFVMFSARKP 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842589|ref|XP_002889176.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335017|gb|EFH65435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  359 bits (922), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 167/234 (71%), Positives = 196/234 (83%), Gaps = 1/234 (0%)

Query: 1   MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 60
           +  ASGSK Y E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPV
Sbjct: 119 LAVASGSKTYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKDYLKPV 178

Query: 61  LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLV 119
           LGGNIIDASCGSG+FSR+FA+S LFSLV+ALDYSENML+QCYE + QE NFP +E  +LV
Sbjct: 179 LGGNIIDASCGSGMFSRLFARSELFSLVIALDYSENMLRQCYELLNQEENFPNREKLVLV 238

Query: 120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179
           RADI+RLPF S S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ I
Sbjct: 239 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFI 298

Query: 180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 233
           PF + LRQ +M+ SGS+ FL+ERE+EDLC+ACGLV F   RN  F+M +ATKPS
Sbjct: 299 PFLKNLRQELMRYSGSHMFLNERELEDLCKACGLVGFTRVRNGPFIMLSATKPS 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411840|ref|NP_565170.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|75329938|sp|Q8LBV4.1|Y1814_ARATH RecName: Full=Uncharacterized methyltransferase At1g78140, chloroplastic; Flags: Precursor gi|21592590|gb|AAM64539.1| unknown [Arabidopsis thaliana] gi|28393453|gb|AAO42148.1| unknown protein [Arabidopsis thaliana] gi|28827348|gb|AAO50518.1| unknown protein [Arabidopsis thaliana] gi|332197950|gb|AEE36071.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  358 bits (920), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 165/234 (70%), Positives = 196/234 (83%), Gaps = 1/234 (0%)

Query: 1   MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 60
           +  ASGSK Y E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPV
Sbjct: 122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181

Query: 61  LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLV 119
           LGGNIIDASCGSG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP KE  +LV
Sbjct: 182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241

Query: 120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179
           RADI+RLPF S S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ I
Sbjct: 242 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFI 301

Query: 180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 233
           PF + LRQ +M+ SGS+ FL+ERE+ED+C+ACGLV+F   RN  F+M +ATKPS
Sbjct: 302 PFLKNLRQEIMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKPS 355

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518483|ref|XP_003527908.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Glycine max]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 169/213 (79%), Positives = 188/213 (88%), Gaps = 1/213 (0%)

Query: 22  RMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFA 80
           R+P +SF++ERGWRQ F VWGGFPGPEKEFELMKG+LKPVLGGNIIDASC SGLFSR+FA
Sbjct: 36  RVPLISFLHERGWRQTFSVWGGFPGPEKEFELMKGFLKPVLGGNIIDASCASGLFSRLFA 95

Query: 81  KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140
           KSGLFS VVALDYSENML+QCYEF+Q+E NFPKENF+LVRADISRLPF SSS+DAVHAGA
Sbjct: 96  KSGLFSFVVALDYSENMLQQCYEFIQKEENFPKENFILVRADISRLPFVSSSVDAVHAGA 155

Query: 141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS 200
           A+HCW SP   VAEISRVLRPGGVFV TTY++DGPF++IPF   LRQN  Q+SGSY FLS
Sbjct: 156 ALHCWPSPIAVVAEISRVLRPGGVFVVTTYMLDGPFSVIPFLSTLRQNARQVSGSYIFLS 215

Query: 201 EREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 233
           ERE+ED CRACGLV FKC RN  F M +ATKPS
Sbjct: 216 ERELEDHCRACGLVGFKCIRNGLFEMISATKPS 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437246|ref|XP_004136403.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Cucumis sativus]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 163/230 (70%), Positives = 193/230 (83%), Gaps = 1/230 (0%)

Query: 5   SGSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGG 63
           +G  D GE M  ATE FR   +SF+YERGWRQ+F V  GFPGPEKEFEL+K ++ PVLGG
Sbjct: 84  TGGTDSGESMPAATEIFRTRLVSFLYERGWRQSFSVLLGFPGPEKEFELIKNFITPVLGG 143

Query: 64  NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123
           +IIDASCGSG+FSRIFAKSGLFS VVALDYSENML+QCYEF++QE NFP E  +L+RADI
Sbjct: 144 SIIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLRQCYEFIKQEENFPNERLVLIRADI 203

Query: 124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 183
           +RLPFASSS+DAVHAGAA+HCW SPS  VAEISR+LRPGGVFV +T+I+DGP++ +PF R
Sbjct: 204 ARLPFASSSVDAVHAGAALHCWPSPSAAVAEISRILRPGGVFVASTFIMDGPYSFVPFLR 263

Query: 184 LLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 233
           +  + + QISGS  FLSERE+E+LC ACGLVDFKC RNR FVM +ATK S
Sbjct: 264 IQIEGIQQISGSRIFLSERELEELCTACGLVDFKCLRNRQFVMLSATKCS 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2194759	355	AT1G78140 [Arabidopsis thalian	0.991	0.656	0.705	1.5e-90
TAIR|locus:2063218	352	AT2G41040 [Arabidopsis thalian	0.970	0.647	0.523	1.8e-62
DICTYBASE|DDB_G0290001	284	DDB_G0290001 [Dictyostelium di	0.565	0.468	0.266	1.7e-08
TIGR_CMR|CPS_2596	265	CPS_2596 "biotin biosynthesis	0.421	0.373	0.315	4.5e-08
TIGR_CMR|BA_2890	258	BA_2890 "methyltransferase, Ub	0.489	0.445	0.278	7.2e-08
UNIPROTKB|Q3AB55	244	menG "Demethylmenaquinone meth	0.689	0.663	0.273	3.5e-07
TIGR_CMR|CHY_1809	244	CHY_1809 "2-heptaprenyl-1,4-na	0.689	0.663	0.273	3.5e-07
POMBASE|SPBC16E9.05	378	erg6 "sterol 24-C-methyltransf	0.651	0.404	0.293	6.3e-07
ASPGD|ASPL0000068274	377	AN7146 [Emericella nidulans (t	0.685	0.427	0.301	8.2e-07
UNIPROTKB|G5EGY9	380	MGCH7_ch7g116 "Sterol 24-C-met	0.557	0.344	0.326	1.1e-06

TAIR|locus:2194759 AT1G78140 [Arabidopsis thaliana (taxid:3702)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 165/234 (70%), Positives = 196/234 (83%)

Query:     1 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 60
             +  ASGSK Y E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPV
Sbjct:   122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181

Query:    61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLV 119
             LGGNIIDASCGSG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP KE  +LV
Sbjct:   182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241

Query:   120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179
             RADI+RLPF S S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ I
Sbjct:   242 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFI 301

Query:   180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 233
             PF + LRQ +M+ SGS+ FL+ERE+ED+C+ACGLV+F   RN  F+M +ATKPS
Sbjct:   302 PFLKNLRQEIMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKPS 355

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2063218 AT2G41040 [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 122/233 (52%), Positives = 161/233 (69%)

Query:     1 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 60
             +T  +   DY E+    TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K  
Sbjct:   124 LTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEA 183

Query:    61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLV 119
              GG ++D SCGSGLFSR FA+SG +S V+ALDYSENML+QC EF++ ++ F    N  +V
Sbjct:   184 EGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVV 243

Query:   120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179
             RAD+SRLPF S S+DAVHAGAA+HCW SP+  +AEI RVLR GGVFVGTT++   P    
Sbjct:   244 RADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGGVFVGTTFLRYSPST-- 301

Query:   180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 232
             P+  ++R    +I  SY +L + EI+D+C +CGL D++      F+MFTA KP
Sbjct:   302 PW--IIRPFQSRILQSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMFTARKP 352

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

DICTYBASE|DDB_G0290001 DDB_G0290001 [Dictyostelium discoideum (taxid:44689)]

 Score = 147 (56.8 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 36/135 (26%), Positives = 69/135 (51%)

Query:    30 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 89
             +++    N+V G    P +  +++K  L   +   I+D +CG+G FS++  ++  F  VV
Sbjct:    15 HDKDVSSNYVKGRPSYPIEAIKMLKEDLGLTIDSKIMDLACGTGKFSKMICEAD-FKNVV 73

Query:    90 ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS 149
              ++ S      C   +++  +   ++  +V    + LPF +S+ D + A  + H W    
Sbjct:    74 CVEPSPEFRVDCSYVLKEFIDDKNKDIQVVNGLATSLPFENSTFDCICAAQSFH-WYDNV 132

Query:   150 TGVAEISRVLRPGGV 164
               + EI+RVL+PGGV
Sbjct:   133 DAIKEITRVLKPGGV 147

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

TIGR_CMR|CPS_2596 CPS_2596 "biotin biosynthesis protein bioC" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 143 (55.4 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 35/111 (31%), Positives = 60/111 (54%)

Query:    65 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124
             ++D   G+G F+ + A +  ++ V+ LD S  ML     F ++  N   +  L + AD  
Sbjct:    51 VLDLGSGTGFFTDLLAST--YNQVIGLDISNEML----HFAKEHRN---KKILWLEADAH 101

Query:   125 RLPFASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDG 174
             +LP   +SID +++   I  W  P    + E+ R+L+PGG+ + TT +VDG
Sbjct:   102 KLPLQDNSIDFIYSNLVIQ-WFDPLDEAITEMLRILKPGGLLIFTT-LVDG 150

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009102 "biotin biosynthetic process" evidence=ISS

TIGR_CMR|BA_2890 BA_2890 "methyltransferase, UbiE/COQ5 family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 141 (54.7 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 34/122 (27%), Positives = 63/122 (51%)

Query:    45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 104
             GP+ ++ + +  ++      ++D + G G  + + A   LF  VVALD +E ML+   +F
Sbjct:    27 GPDLQYVVQQ--VESRHNNRLLDIATGGGHVANVLAP--LFKEVVALDLTEKMLENAKKF 82

Query:   105 VQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGV 164
             +    +   EN   V  +   LPF+ SS D +    A H +++P+  + E++R L   G+
Sbjct:    83 IISNGH---ENVSFVAGNAESLPFSDSSFDTITCRIAAHHFTNPAQFIYEVNRTLEDNGL 139

Query:   165 FV 166
             F+
Sbjct:   140 FI 141

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009108 "coenzyme biosynthetic process" evidence=ISS

UNIPROTKB|Q3AB55 menG "Demethylmenaquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 135 (52.6 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 50/183 (27%), Positives = 84/183 (45%)

Query:    62 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LV 119
             GG  +D +CG+G+F+   A+  G    VV LD++ENML+   + +   + +  E  + LV
Sbjct:    52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNI---ARYSMEKIIKLV 108

Query:   120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT-----TYIVDG 174
               +   LPF  +S D    G A+         + E+ RV++PGG  V       T+ V  
Sbjct:   109 HGNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGGRVVNLELAHPTFPVFK 168

Query:   175 PFNLIPFSRL---LRQNMMQISGSYTFLS--------EREIEDLCRACGLVDFKCTRNRG 223
                   F +L   L +  + + G Y++L         ++ I+ +    GLVD KC    G
Sbjct:   169 QLYWFYFEKLVPLLGKLGVGVDGPYSYLPNSVKNFPHQQVIKKMFEDLGLVDVKCYELTG 228

Query:   224 FVM 226
              ++
Sbjct:   229 GIV 231

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1809 CHY_1809 "2-heptaprenyl-1,4-naphthoquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 135 (52.6 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 50/183 (27%), Positives = 84/183 (45%)

Query:    62 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LV 119
             GG  +D +CG+G+F+   A+  G    VV LD++ENML+   + +   + +  E  + LV
Sbjct:    52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNI---ARYSMEKIIKLV 108

Query:   120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT-----TYIVDG 174
               +   LPF  +S D    G A+         + E+ RV++PGG  V       T+ V  
Sbjct:   109 HGNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGGRVVNLELAHPTFPVFK 168

Query:   175 PFNLIPFSRL---LRQNMMQISGSYTFLS--------EREIEDLCRACGLVDFKCTRNRG 223
                   F +L   L +  + + G Y++L         ++ I+ +    GLVD KC    G
Sbjct:   169 QLYWFYFEKLVPLLGKLGVGVDGPYSYLPNSVKNFPHQQVIKKMFEDLGLVDVKCYELTG 228

Query:   224 FVM 226
              ++
Sbjct:   229 GIV 231

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

POMBASE|SPBC16E9.05 erg6 "sterol 24-C-methyltransferase Erg6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 137 (53.3 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 51/174 (29%), Positives = 84/174 (48%)

Query:    29 IYERGWRQNFVWGGFPGPEK------EFELMKGY---LKPVLGGNIIDASCGSGLFSRIF 79
             +YE GW Q+F +  F   E         E    Y   +KP  G  ++D  CG G  +R  
Sbjct:    85 LYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLAYRMGIKP--GSRVLDVGCGVGGPAREI 142

Query:    80 AKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA- 138
              +    +LV  L+ ++  + +C  +  +  N  K+  + V+ D   +PF  ++ D V+A 
Sbjct:   143 TEFTGCNLV-GLNNNDYQISRCNNYAVKR-NLDKKQ-VFVKGDFMHMPFEDNTFDYVYAI 199

Query:   139 GAAIHCWSSPST-GV-AEISRVLRPGGVFVGTTYIVDGPFNL-IPFSRLLRQNM 189
              A +H   +PS  GV  EI RVL+PGGVF    +++   ++  IP  R +  N+
Sbjct:   200 EATVH---APSLEGVYGEIFRVLKPGGVFGVYEWVMSDDYDSSIPKHREIAYNI 250

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006696 "ergosterol biosynthetic process" evidence=ISO;IMP

GO:0071210 "protein insertion into membrane raft" evidence=IMP

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

ASPGD|ASPL0000068274 AN7146 [Emericella nidulans (taxid:162425)]

 Score = 136 (52.9 bits), Expect = 8.2e-07, P = 8.2e-07
 Identities = 53/176 (30%), Positives = 85/176 (48%)

Query:    29 IYERGWRQNFVWGGFPGPEKEFELM---KGYLKPVLG---G-NIIDASCGSGLFSRIFAK 81
             +YE GW  +F +  F   E  ++ +   + YL   +G   G  ++D  CG G  +R   K
Sbjct:    88 LYEYGWGTSFHFCRFAYGEPFYQAIARHEHYLAHQMGIKPGMKVLDVGCGVGGPAREIVK 147

Query:    82 SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA-GA 140
                 + V  L+ ++  +++   + ++E    K NF  V+ D  ++ F  +S DAV+A  A
Sbjct:   148 F-TDAHVTGLNNNDYQIQRATRYAEREGLSHKLNF--VKGDFMQMQFPDNSFDAVYAIEA 204

Query:   141 AIHCWSSPSTGV-AEISRVLRPGGVF-VGTTYIVDGPFNLIPFSRLLRQNMMQISG 194
              +H  +    GV  EI RVL+PGGVF V    + D   N  P  R +R  + Q  G
Sbjct:   205 TVH--APELAGVYKEIMRVLKPGGVFGVYEWLMTDAYDNDNPEHRKIRLGIEQGDG 258

GO:0016125 "sterol metabolic process" evidence=RCA

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IEA;RCA

GO:0005634 "nucleus" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IEA

GO:0071210 "protein insertion into membrane raft" evidence=IEA

GO:0006696 "ergosterol biosynthetic process" evidence=IEA

UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 135 (52.6 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 48/147 (32%), Positives = 75/147 (51%)

Query:    29 IYERGWRQNFVWGGFPGPEKEFELM---KGYLKPVLG---G-NIIDASCGSGLFSRIFAK 81
             IYE GW Q+F +  F   E  ++ +   + YL   +G   G  ++D  CG G  +R  AK
Sbjct:    90 IYEYGWGQSFHFCRFSHNESFYQAIARHEHYLAHQIGIKEGMTVLDVGCGVGGPAREIAK 149

Query:    82 -SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA-G 139
              +G    VV L+ ++  + +   + +QE    +  F  V+ D  ++ F   S DAV+A  
Sbjct:   150 FTGCN--VVGLNNNDYQIDRATHYAKQEKLDSQLQF--VKGDFMQMSFPDESFDAVYAIE 205

Query:   140 AAIHCWSSPSTGV-AEISRVLRPGGVF 165
             A +H  +    GV +EI RVL+PGG F
Sbjct:   206 ATVH--APKLEGVYSEIFRVLKPGGTF 230

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBV4	Y1814_ARATH	2, ., 1, ., 1, ., -	0.7051	0.9914	0.6563	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.1548.1 hypothetical protein (293 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	1e-23
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	1e-18
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	4e-17
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-14
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	1e-12
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	1e-12
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	3e-12
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	5e-12
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	1e-11
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	2e-11
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	9e-11
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-10
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	7e-10
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	7e-09
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	5e-08
PRK05785	226	PRK05785, PRK05785, hypothetical protein; Provisio	1e-07
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	1e-06
TIGR00452	314	TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransfer	5e-06
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	1e-05
pfam08003	315	pfam08003, Methyltransf_9, Protein of unknown func	6e-05
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	8e-05
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	5e-04
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	0.003

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 90.0 bits (224), Expect = 1e-23
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 66  IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125
           +D  CG+GL +   A+ G  + V  +D S  ML    +         +     V  D   
Sbjct: 1   LDVGCGTGLLAEALARRG-GARVTGVDLSPEMLALARK---------RAPRKFVVGDAED 50

Query: 126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
           LPF   S D V +   +H    P   + EI+RVL+PGG  V
Sbjct: 51  LPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 16/148 (10%)

Query: 65  IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124
           ++D  CG+G  +R   K    +  +A D S  ML Q      +        F+    D  
Sbjct: 38  VLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQA-----KTKLSENVQFIC--GDAE 90

Query: 125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 184
           +LP   SS D + +  A+      S  ++E++RVL+PGG+   +T+   GP  L    + 
Sbjct: 91  KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF---GPGTLHELRQS 147

Query: 185 LRQNMMQISGSYTFLSEREIEDLCRACG 212
             Q+ ++      +LS  E++ L +   
Sbjct: 148 FGQHGLR------YLSLDELKALLKNSF 169

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 76.9 bits (190), Expect = 4e-17
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 18/143 (12%)

Query: 24  PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 83
             MSF   R WR+  +            L+   +KP  G  ++D +CG+G  + + AKS 
Sbjct: 29  DLMSFGLHRLWRRALI-----------SLLG--IKP--GDKVLDVACGTGDMALLLAKSV 73

Query: 84  LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 143
               VV LD SE+ML+      ++      +N   V  D   LPF  +S DAV     + 
Sbjct: 74  GTGEVVGLDISESMLEVA---REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130

Query: 144 CWSSPSTGVAEISRVLRPGGVFV 166
             +     + E+ RVL+PGG  +
Sbjct: 131 NVTDIDKALKEMYRVLKPGGRLL 153

Length = 238

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 62  GGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120
           G  ++D  CG G  +R  A+  G    VV +D SE ML    E  +     P   F  VR
Sbjct: 20  GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKE--RAAGLGPNVEF--VR 75

Query: 121 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 163
            D   LPF   S DAV +   +     P+  +AEI+RVLRPGG
Sbjct: 76  GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118

Length = 241

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 51/219 (23%), Positives = 83/219 (37%), Gaps = 48/219 (21%)

Query: 25  FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL 84
            +SF   R WR+  V                 +    G  ++D +CG+G  +   AKS  
Sbjct: 18  LLSFGLHRLWRRRAV---------------KLIGVFKGQKVLDVACGTGDLAIELAKSAP 62

Query: 85  FSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 143
               V  +D+S  ML+     V ++ +    N   ++AD   LPF  +S DAV     + 
Sbjct: 63  DRGKVTGVDFSSEMLE-----VAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117

Query: 144 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP---------------FNLIP-FSRLLRQ 187
             +     + E+ RVL+PGG  V    I++                  N++P    L+ +
Sbjct: 118 NVTDIQKALREMYRVLKPGGRLV----ILEFSKPANALLKKFYKFYLKNVLPSIGGLISK 173

Query: 188 NMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVM 226
           N    + +YT+L E  I        L      +  GF  
Sbjct: 174 N----AEAYTYLPE-SIRAFPSQEELAAM--LKEAGFEE 205

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 64.8 bits (159), Expect = 1e-12
 Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 24/145 (16%)

Query: 26  MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGL 84
           +SF   R WR+  +                +L    G  ++D +CG+G  +   AK  G 
Sbjct: 31  LSFGLHRVWRRKTI---------------KWLGVRPGDKVLDLACGTGDLAIALAKAVGK 75

Query: 85  FSLVVALDYSENMLKQCYEFVQQE---SNFPKENFLLVRADISRLPFASSSIDAVHAGAA 141
              VV LD+SE ML      V +E         N   V+ D   LPF  +S DAV     
Sbjct: 76  TGEVVGLDFSEGMLA-----VGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130

Query: 142 IHCWSSPSTGVAEISRVLRPGGVFV 166
           +         + E+ RVL+PGG  V
Sbjct: 131 LRNVPDIDKALREMYRVLKPGGRLV 155

Length = 239

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 60.5 bits (147), Expect = 3e-12
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 66  IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125
           +D  CG+G   R   ++        +D S   L+   E +            L   D   
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 165
           L   S   D V A   +H  + P   +  + R+L+PGGV 
Sbjct: 61  LDPGS--FDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 60.1 bits (146), Expect = 5e-12
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 65  IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124
           I+D  CG+G   R  A++G  S V  +D S+  L+   E +      PK  F  V AD  
Sbjct: 1   ILDLGCGTGRVLRALARAG-PSSVTGVDISKEALELAKERL--RDKGPKVRF--VVADAR 55

Query: 125 RLPFASSSIDAVH-AGAAIHCWSSPS--TGVAEISRVLRPGG 163
            LPF   S D V  AG ++   S       + E +R+LRPGG
Sbjct: 56  DLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 62  GGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120
           G  ++D  CG+G  + I A K G  + VV +D SE  +++  +   ++  +    F+   
Sbjct: 4   GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA-KENAKKLGYENVEFIQGD 62

Query: 121 A-DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179
             ++ +L    +S D V +   ++    P   + EI RVL+PGGV      IV  P  L 
Sbjct: 63  IEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVL-----IVSDPVLLS 117

Query: 180 PFSRLLRQNM 189
               LL    
Sbjct: 118 ELPALLEDLE 127

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%)

Query: 65  IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124
           ++DA CG G  SR + + G  S V ALD S  ML Q  +  +  +    +++L    DI 
Sbjct: 46  VLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQ--KDAA----DHYLA--GDIE 95

Query: 125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169
            LP A+++ D   +  A+    + ST + E+ RV+RPGGV   TT
Sbjct: 96  SLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140

Length = 251

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 56.7 bits (137), Expect = 9e-11
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 64  NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123
            ++D  CG+G  +   A       V  +D S   L+      +  +    +N  +++ D 
Sbjct: 1   RVLDLGCGTGALALALASGPGAR-VTGVDISPVALELA---RKAAAALLADNVEVLKGDA 56

Query: 124 SRLPF-ASSSIDAVHAGAAIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIV 172
             LP  A  S D + +   +H      +  + E  R+L+PGGV V T  + 
Sbjct: 57  EELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLVLA 107

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 12/108 (11%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK---ENFLL 118
           G  ++D  CG+G  +   A+    + V  +D S  ML+          N           
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELA------RENAKLALGPRITF 55

Query: 119 VRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
           V+ D           DAV  G            +  ++ +L+PGG  V
Sbjct: 56  VQGDAPDALDLLEGFDAVFIGGGGGDLLEL---LDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 57.2 bits (135), Expect = 7e-10
 Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 6/168 (3%)

Query: 13  LMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGS 72
               + E        +         F+       +    L    L P   G ++D  CG+
Sbjct: 1   DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLG-VLDIGCGT 59

Query: 73  GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRLPFAS 130
           G  + +    G  + VV +D S  ML        +           V AD     LPF  
Sbjct: 60  GRLALLARLGGRGAYVVGVDLSPEMLAL---ARARAEGAGLGLVDFVVADALGGVLPFED 116

Query: 131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 178
           S+   +     +     P+  + E+ RVL+PGG  V +  + DG    
Sbjct: 117 SASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEG 164

Length = 257

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 62  GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120
           G   +D + G+G ++   + S G    VV LD +ENMLK+  +  ++E    K N   ++
Sbjct: 48  GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEG---KYNIEFLQ 104

Query: 121 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
            +   LPF   S D V     +  +      + E  RVL+PGG  V
Sbjct: 105 GNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVV 150

Length = 233

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 23/152 (15%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
           GG ++D  CG+G+  R+  + G    V  +D S   +     F   +       +     
Sbjct: 23  GGRVLDIGCGTGILLRLLRERGFD--VTGVDPSPAAVLIFSLFDAPDPAVLAGKY----- 75

Query: 122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 181
                       D + A   +     P   + ++  +L+PGGV + +T + D    L   
Sbjct: 76  ------------DLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDARLFAN 123

Query: 182 SRLLRQNMMQISGSYTFLSEREIEDLCRACGL 213
              LR     IS    F SE  ++ L    G 
Sbjct: 124 WHYLRPRNTHIS----FYSEESLKRLLEKAGF 151

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 19/114 (16%)

Query: 51  ELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 106
           EL+K  LK    P     ++D + G G  S  F K   +  VVALDY+ENMLK     V 
Sbjct: 40  ELVKTILKYCGRPKK---VLDVAAGKGELSYHFKKVFKYY-VVALDYAENMLK--MNLVA 93

Query: 107 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLR 160
            +          V      LPF   S D V +  A+H   +    +AE +RV R
Sbjct: 94  DDK---------VVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR 138

Length = 226

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 62  GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120
           G + +D  CG+  +S   A++ G    V+ LD+SENML    + V+        N  LV 
Sbjct: 46  GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVH 102

Query: 121 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
            +   LPF  +S D V  G  +         + E+ RV++PGG  V
Sbjct: 103 GNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 21/187 (11%)

Query: 34  WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 93
           WR +  W          + +  +L P+ G  I+D  CGSG         G    +V +D 
Sbjct: 104 WRSDIKW----------DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDP 152

Query: 94  SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA 153
           +   L Q +E V++  +  K   L     I +L     + D V +   ++   SP   + 
Sbjct: 153 TVLFLCQ-FEAVRKLLDNDKRAILEPLG-IEQLH-ELYAFDTVFSMGVLYHRKSPLEHLK 209

Query: 154 EISRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 211
           ++   L   G  V  T ++DG  N  L+P  R       ++   Y   S   +++     
Sbjct: 210 QLKHQLVIKGELVLETLVIDGDLNTVLVPKDR-----YAKMKNVYFIPSVSALKNWLEKV 264

Query: 212 GLVDFKC 218
           G  +F+ 
Sbjct: 265 GFENFRI 271

This model describes a set of proteins with homology in its central region to a large number of methyltransferases active on a variety of substrates. The similarity includes a motif resembling ILDVGCG[SG]G. Known examples to date are restricted to the proteobacteria [Unknown function, Enzymes of unknown specificity]. Length = 314

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 61  LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 119
           +G  ++D  CGSG  + + + K G    V+ LD+S   L       + ++    +N   +
Sbjct: 73  MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWI 132

Query: 120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG 162
             D + LPF     DA+  G  +         + E+ RVL+PG
Sbjct: 133 EGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG 175

Length = 261

>gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698)

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 23/188 (12%)

Query: 34  WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS-RIFAKSGLFSLVVALD 92
           WR ++ W          + +  +L P+ G  I+D  CG+G    R+  +    +LVV +D
Sbjct: 98  WRSDWKW----------DRVLPHLSPLKGRTILDVGCGNGYHMWRMLGEGA--ALVVGID 145

Query: 93  YSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV 152
            SE  L Q +E V++     +   LL    I +LP A  + D V +   ++   SP   +
Sbjct: 146 PSELFLCQ-FEAVRKLLGNDQRAHLLPLG-IEQLP-ALEAFDTVFSMGVLYHRRSPLDHL 202

Query: 153 AEISRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 210
            ++   L  GG  V  T +++G  N  L+P  R       Q+   Y   S   +++    
Sbjct: 203 LQLKDQLVKGGELVLETLVIEGDENTVLVPGDR-----YAQMRNVYFIPSAAALKNWLEK 257

Query: 211 CGLVDFKC 218
           CG VD + 
Sbjct: 258 CGFVDVRI 265

This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins. Length = 315

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
           G  ++D   GSG F    A++G  + VV ++            +      P     +V  
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAP--RVRVVVG 58

Query: 122 DISRLP-FASSSIDAV--------HAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
           D   L      S D V         AG            +A   R+L+PGGV V
Sbjct: 59  DARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112

This family contains methyltransferase domains. Length = 117

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML 98
           P+ G  ++DA CG+GL S   AK G  ++V A+D SE M+
Sbjct: 52 DPLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMV 90

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 125 RLPFASSSIDAVHAGAAIHCWSSPSTGV--AEISRVLRPGGVFV 166
           RLP+ S S D  H    +  W + + G+   E+ RVLRPGG FV
Sbjct: 174 RLPYPSRSFDMAHCSRCLIPWHA-NDGILLLEVDRVLRPGGYFV 216

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.97
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.96
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.94
PLN02244	340	tocopherol O-methyltransferase	99.93
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.93
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.92
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.92
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.91
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.91
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.9
PLN02490	340	MPBQ/MSBQ methyltransferase	99.89
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.89
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.89
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.89
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.89
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.89
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.89
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.88
PLN02336	475	phosphoethanolamine N-methyltransferase	99.88
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.88
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.87
PRK08317	241	hypothetical protein; Provisional	99.87
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.87
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.87
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.87
PRK05785	226	hypothetical protein; Provisional	99.86
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.86
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.86
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.85
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.85
PRK11207	197	tellurite resistance protein TehB; Provisional	99.85
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.85
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.84
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.84
KOG4300	252	consensus Predicted methyltransferase [General fun	99.84
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.83
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.83
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.83
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.82
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.81
PRK06202	232	hypothetical protein; Provisional	99.81
PRK12335	287	tellurite resistance protein TehB; Provisional	99.81
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.8
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.79
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.78
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.78
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.78
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.78
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.78
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.77
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.77
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.77
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.76
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.76
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.76
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.76
PLN03075	296	nicotianamine synthase; Provisional	99.75
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.75
PRK04266	226	fibrillarin; Provisional	99.75
PLN02336	475	phosphoethanolamine N-methyltransferase	99.74
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.74
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.74
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.74
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.74
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.74
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.74
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.74
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.73
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.72
PRK14968	188	putative methyltransferase; Provisional	99.72
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.72
PRK06922	677	hypothetical protein; Provisional	99.72
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.71
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.71
KOG1271	227	consensus Methyltransferases [General function pre	99.71
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.71
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.71
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.7
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.7
KOG2361	264	consensus Predicted methyltransferase [General fun	99.7
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.7
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.69
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.69
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.69
COG4123	248	Predicted O-methyltransferase [General function pr	99.69
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.69
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.68
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.68
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.68
PRK14967	223	putative methyltransferase; Provisional	99.68
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.67
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.66
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.66
PTZ00146	293	fibrillarin; Provisional	99.66
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.66
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.66
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.66
TIGR03438	301	probable methyltransferase. This model represents	99.66
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.66
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.65
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.64
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.64
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.64
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.64
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.63
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.63
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.63
PRK07402	196	precorrin-6B methylase; Provisional	99.62
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.61
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.61
PHA03411	279	putative methyltransferase; Provisional	99.61
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.61
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.59
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.59
COG2890	280	HemK Methylase of polypeptide chain release factor	99.58
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.57
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.57
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.56
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.54
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.53
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.52
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.51
PRK04457	262	spermidine synthase; Provisional	99.51
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.5
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.5
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.49
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.48
PRK00811	283	spermidine synthase; Provisional	99.46
TIGR00438	188	rrmJ cell division protein FtsJ.	99.46
PRK01581	374	speE spermidine synthase; Validated	99.46
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.45
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.44
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.44
KOG3010	261	consensus Methyltransferase [General function pred	99.44
KOG2899	288	consensus Predicted methyltransferase [General fun	99.44
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.44
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.44
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.41
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.41
PRK03612	521	spermidine synthase; Provisional	99.41
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	99.4
KOG2940	325	consensus Predicted methyltransferase [General fun	99.4
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.39
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.38
PLN02366	308	spermidine synthase	99.37
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.36
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.36
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.36
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.35
PLN02672	1082	methionine S-methyltransferase	99.35
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.35
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.32
PHA03412	241	putative methyltransferase; Provisional	99.32
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.31
COG4122	219	Predicted O-methyltransferase [General function pr	99.3
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.3
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	99.3
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.28
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.26
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.26
COG2521	287	Predicted archaeal methyltransferase [General func	99.26
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.26
KOG2904	328	consensus Predicted methyltransferase [General fun	99.25
PLN02476	278	O-methyltransferase	99.25
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.24
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.23
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.22
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.19
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.19
KOG1331	293	consensus Predicted methyltransferase [General fun	99.19
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.18
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.17
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	99.17
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.16
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.16
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.16
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.14
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.14
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.13
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.11
PLN02823	336	spermine synthase	99.1
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.09
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.07
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.05
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.04
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.04
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.04
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.03
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	99.03
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.02
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.02
PRK00536	262	speE spermidine synthase; Provisional	99.02
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.0
PRK04148	134	hypothetical protein; Provisional	99.0
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	99.0
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.99
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.98
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.98
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.98
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.94
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.94
COG2520	341	Predicted methyltransferase [General function pred	98.94
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.92
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.9
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.9
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.9
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.89
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.89
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.88
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.86
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.86
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.82
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.8
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.8
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.78
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.75
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.74
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.74
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	98.73
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.73
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.7
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.69
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.68
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.67
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.67
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.65
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	98.61
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.61
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.6
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.58
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.58
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.57
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.57
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.57
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.55
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.53
COG3897	218	Predicted methyltransferase [General function pred	98.53
PF13679	141	Methyltransf_32: Methyltransferase domain	98.52
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.52
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.44
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.42
COG4076	252	Predicted RNA methylase [General function predicti	98.37
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.34
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.34
COG4798	238	Predicted methyltransferase [General function pred	98.32
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.3
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.29
KOG3115	249	consensus Methyltransferase-like protein [General	98.25
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.24
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.23
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.22
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.2
KOG2730	263	consensus Methylase [General function prediction o	98.2
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	98.18
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.16
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.14
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	98.12
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.11
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.08
KOG4058	199	consensus Uncharacterized conserved protein [Funct	98.08
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.94
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.86
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	97.86
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	97.85
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.81
PRK10742	250	putative methyltransferase; Provisional	97.79
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.74
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.67
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.64
COG0286	489	HsdM Type I restriction-modification system methyl	97.54
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.49
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.43
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.4
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.37
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.28
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.28
PF03269	177	DUF268: Caenorhabditis protein of unknown function	97.27
PRK11524	284	putative methyltransferase; Provisional	97.22
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.19
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	97.15
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	97.13
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.07
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.06
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	97.02
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.98
PRK13699	227	putative methylase; Provisional	96.95
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.92
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	96.9
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	96.9
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.88
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.82
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.79
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.75
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.73
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	96.66
COG3315	297	O-Methyltransferase involved in polyketide biosynt	96.6
KOG1227	351	consensus Putative methyltransferase [General func	96.59
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.58
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.58
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.48
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.41
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	96.38
COG4301	321	Uncharacterized conserved protein [Function unknow	96.35
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	96.22
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.22
PRK10458	467	DNA cytosine methylase; Provisional	96.16
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.07
PHA01634	156	hypothetical protein	95.98
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	95.85
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.81
KOG2671	421	consensus Putative RNA methylase [Replication, rec	95.8
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.79
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.78
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.53
COG1565	370	Uncharacterized conserved protein [Function unknow	95.52
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.32
KOG2920	282	consensus Predicted methyltransferase [General fun	95.31
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.14
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	95.12
KOG2782	303	consensus Putative SAM dependent methyltransferase	95.05
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.94
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.8
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.79
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.75
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.73
PRK13699	227	putative methylase; Provisional	94.7
PTZ00357	1072	methyltransferase; Provisional	94.69
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.59
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	94.53
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.51
KOG2078	495	consensus tRNA modification enzyme [RNA processing	94.49
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.2
COG1568	354	Predicted methyltransferases [General function pre	94.13
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.11
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.77
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	93.66
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	93.49
TIGR00497	501	hsdM type I restriction system adenine methylase (	93.47
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	93.46
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	93.39
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.97
PLN02740	381	Alcohol dehydrogenase-like	92.97
COG1255	129	Uncharacterized protein conserved in archaea [Func	92.9
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	92.9
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.65
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	92.58
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.5
COG0863	302	DNA modification methylase [DNA replication, recom	92.43
PLN02586	360	probable cinnamyl alcohol dehydrogenase	92.37
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	92.36
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.33
PRK11524	284	putative methyltransferase; Provisional	92.26
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	92.15
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	92.06
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	92.0
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.99
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	91.83
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	91.81
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	91.78
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	91.77
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	91.65
COG4017	254	Uncharacterized protein conserved in archaea [Func	91.55
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	91.35
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	91.34
KOG3924	419	consensus Putative protein methyltransferase invol	91.19
PLN02827	378	Alcohol dehydrogenase-like	91.19
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	91.12
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.94
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	90.79
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	90.72
PRK08265	261	short chain dehydrogenase; Provisional	90.71
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	90.59
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.96
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	89.9
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	89.89
PLN02514	357	cinnamyl-alcohol dehydrogenase	89.69
PRK07109	334	short chain dehydrogenase; Provisional	89.58
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	89.51
PLN02494	477	adenosylhomocysteinase	89.49
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.37
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	89.19
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	89.16
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	89.1
PF07109	97	Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl	89.08
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	89.03
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	89.01
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.01
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	88.93
PRK12939	250	short chain dehydrogenase; Provisional	88.89
PF01206	70	TusA: Sulfurtransferase TusA; InterPro: IPR001455	88.62
PRK07417	279	arogenate dehydrogenase; Reviewed	88.56
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	88.5
PRK08324	681	short chain dehydrogenase; Validated	88.37
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	88.27
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	88.25
PRK06181	263	short chain dehydrogenase; Provisional	88.21
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	88.09
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	88.07
PRK07576	264	short chain dehydrogenase; Provisional	88.03
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	88.03
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	88.03
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	87.94
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	87.92
PRK08267	260	short chain dehydrogenase; Provisional	87.86
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	87.77
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	87.75
PRK05562	223	precorrin-2 dehydrogenase; Provisional	87.74
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	87.74
PLN02178	375	cinnamyl-alcohol dehydrogenase	87.65
PF14740	289	DUF4471: Domain of unknown function (DUF4471)	87.57
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	87.51
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	87.51
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	87.28
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	86.89
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	86.85
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	86.71
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	86.62
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	86.51
PLN00203	519	glutamyl-tRNA reductase	86.42
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	86.35
KOG2912	419	consensus Predicted DNA methylase [Function unknow	86.3
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	86.21
COG4121	252	Uncharacterized conserved protein [Function unknow	86.2
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	85.88
PRK06701	290	short chain dehydrogenase; Provisional	85.45
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	85.41
PF06690	252	DUF1188: Protein of unknown function (DUF1188); In	85.35
PRK05854	313	short chain dehydrogenase; Provisional	85.28
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.08
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	85.05
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	84.85
cd03420	69	SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like	84.73
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.69
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	84.62
PF08468	155	MTS_N: Methyltransferase small domain N-terminal;	84.43
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	84.35
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	84.14
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	84.11
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	84.08
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	84.07
PF11253	127	DUF3052: Protein of unknown function (DUF3052); In	84.05
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	84.0
PRK06128	300	oxidoreductase; Provisional	83.85
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	83.51
PF08484	160	Methyltransf_14: C-methyltransferase C-terminal do	83.51
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	83.36
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	83.34
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	82.99
PRK08306	296	dipicolinate synthase subunit A; Reviewed	82.95
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	82.45
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	82.23
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	82.18
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	81.99
PRK11730	715	fadB multifunctional fatty acid oxidation complex	81.84
PRK08339	263	short chain dehydrogenase; Provisional	81.82
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	81.76
PRK08177	225	short chain dehydrogenase; Provisional	81.76
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	81.67
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	81.56
cd03423	69	SirA SirA (also known as UvrY, and YhhP) belongs t	81.56
PRK10669	558	putative cation:proton antiport protein; Provision	81.54
cd00291	69	SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered a	81.29
PRK08507	275	prephenate dehydrogenase; Validated	81.17
PRK03562	621	glutathione-regulated potassium-efflux system prot	81.0
PRK07890	258	short chain dehydrogenase; Provisional	80.97
COG0569	225	TrkA K+ transport systems, NAD-binding component [	80.79
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	80.63
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	80.51
PRK07102	243	short chain dehydrogenase; Provisional	80.5
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	80.34
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	80.34
PRK03659	601	glutathione-regulated potassium-efflux system prot	80.34
PRK05867	253	short chain dehydrogenase; Provisional	80.3
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	80.29
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.23
PRK06172	253	short chain dehydrogenase; Provisional	80.15

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.97  E-value=1.8e-28  Score=183.49  Aligned_cols=196  Identities=24%  Similarity=0.331  Sum_probs=152.4

Q ss_pred             hhhcccccccccccceecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHH
Q 026688           19 EFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML   98 (235)
Q Consensus        19 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~   98 (235)
                      .+..|+.++...++.|++.               +.+.+...++.+|||+|||||..+..+++..+.++|+++|+|+.|+
T Consensus        24 YD~~n~~~S~g~~~~Wr~~---------------~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML   88 (238)
T COG2226          24 YDLMNDLMSFGLHRLWRRA---------------LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML   88 (238)
T ss_pred             HHhhcccccCcchHHHHHH---------------HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH
Confidence            3456677777777778743               3344444478999999999999999999997788999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCccc
Q 026688           99 KQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL  178 (235)
Q Consensus        99 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~  178 (235)
                      +.++++....+.   .+++++.+|++++|+++++||+|.+.++|+++++++++|++++|+|||||.+++.+.........
T Consensus        89 ~~a~~k~~~~~~---~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~  165 (238)
T COG2226          89 EVAREKLKKKGV---QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVL  165 (238)
T ss_pred             HHHHHHhhccCc---cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhh
Confidence            999999987552   34999999999999999999999999999999999999999999999999999999887542222


Q ss_pred             chhHHHHHHh--H---hh------------cCCceeecCHHHHHHHHHHcCCceeEEE--eeCcEEEEEEecC
Q 026688          179 IPFSRLLRQN--M---MQ------------ISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKP  232 (235)
Q Consensus       179 ~~~~~~~~~~--~---~~------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~~~~~~~k~  232 (235)
                      ......+...  +   ..            ..+...+.+.+++..+++++||+.+...  ..+...++++.|+
T Consensus       166 ~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K~  238 (238)
T COG2226         166 RKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP  238 (238)
T ss_pred             HHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEecC
Confidence            2222211111  0   00            1112456788999999999999977643  5566777777774

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.96  E-value=5.1e-29  Score=188.50  Aligned_cols=193  Identities=24%  Similarity=0.370  Sum_probs=93.6

Q ss_pred             hcccccccccccceecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHH
Q 026688           21 FRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLK   99 (235)
Q Consensus        21 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~   99 (235)
                      ..|..++.+.+..|++.               +.+.+...++.+|||+|||+|..+..++++ ++..+|+++|+|+.|++
T Consensus        22 ~~n~~ls~g~~~~wr~~---------------~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~   86 (233)
T PF01209_consen   22 RMNDLLSFGQDRRWRRK---------------LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLE   86 (233)
T ss_dssp             ---------------SH---------------HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHH
T ss_pred             CCccccCCcHHHHHHHH---------------HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHH
Confidence            45667788888888743               334455566889999999999999999886 55679999999999999


Q ss_pred             HHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccc
Q 026688          100 QCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI  179 (235)
Q Consensus       100 ~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~  179 (235)
                      .|++++...+   ..+++++++|++++|+++++||+|++.+.+++++|+.+.+++++|+|||||.+++.+++........
T Consensus        87 ~a~~k~~~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~  163 (233)
T PF01209_consen   87 VARKKLKREG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLR  163 (233)
T ss_dssp             HHHHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHH
T ss_pred             HHHHHHHhhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhh
Confidence            9999998765   3489999999999999999999999999999999999999999999999999999998875421111


Q ss_pred             hhHHHHHHh--------Hhh--------cCCceeecCHHHHHHHHHHcCCceeEEE--eeCcEEEEEEec
Q 026688          180 PFSRLLRQN--------MMQ--------ISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATK  231 (235)
Q Consensus       180 ~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~~~~~~~k  231 (235)
                      .+...+...        +..        ..+...+.+.+++.++++++||+.++..  ..|...++++.|
T Consensus       164 ~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K  233 (233)
T PF01209_consen  164 ALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK  233 (233)
T ss_dssp             HHHHH-----------------------------------------------------------------
T ss_pred             ceeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            111111110        000        1122456788999999999999977664  566677777765

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.94  E-value=1.2e-25  Score=173.96  Aligned_cols=178  Identities=20%  Similarity=0.254  Sum_probs=131.3

Q ss_pred             HHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           53 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        53 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      +.+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|+++..........++++.++|+.++|++++
T Consensus        65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~  144 (261)
T PLN02233         65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC  144 (261)
T ss_pred             HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence            344555566889999999999999988876 4567999999999999999877542110013478999999999999888


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH--------hHhh-------cCCce
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--------NMMQ-------ISGSY  196 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~--------~~~~-------~~~~~  196 (235)
                      +||+|++..+++|++++..+++++.++|||||.+++.++..+......+....+..        .+..       .....
T Consensus       145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~  224 (261)
T PLN02233        145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSIN  224 (261)
T ss_pred             CEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999876432111111110000        0000       00113


Q ss_pred             eecCHHHHHHHHHHcCCceeEEEee--CcEEEEEEe
Q 026688          197 TFLSEREIEDLCRACGLVDFKCTRN--RGFVMFTAT  230 (235)
Q Consensus       197 ~~~~~~~~~~~l~~~Gf~~~~~~~~--~~~~~~~~~  230 (235)
                      .+++.+++.++++++||+.++....  +...+++++
T Consensus       225 ~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~  260 (261)
T PLN02233        225 EYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT  260 (261)
T ss_pred             hcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence            4789999999999999998776543  345556655

>PLN02244 tocopherol O-methyltransferase

Probab=99.93  E-value=2.7e-24  Score=172.32  Aligned_cols=171  Identities=20%  Similarity=0.180  Sum_probs=130.5

Q ss_pred             HHHHHHhhcCC-----CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           49 EFELMKGYLKP-----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        49 ~~~~i~~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      ..+.+++.+..     .++.+|||||||+|.++..+++.. .++|+|+|+|+.+++.++++....+.  ..++++.++|+
T Consensus       101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~--~~~v~~~~~D~  177 (340)
T PLN02244        101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL--SDKVSFQVADA  177 (340)
T ss_pred             HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcCc
Confidence            44555665554     567899999999999999999875 46999999999999999998876654  35799999999


Q ss_pred             ccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCc----ccchhHHHHHHhHhhcCCceeec
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF----NLIPFSRLLRQNMMQISGSYTFL  199 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  199 (235)
                      .+.++++++||+|++..+++|+++..++++++.++|+|||.+++.++......    ...+....+...+........+.
T Consensus       178 ~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~  257 (340)
T PLN02244        178 LNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWC  257 (340)
T ss_pred             ccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCC
Confidence            99888889999999999999999999999999999999999999886542211    11112111111111111112346


Q ss_pred             CHHHHHHHHHHcCCceeEEEeeC
Q 026688          200 SEREIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       200 ~~~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                      +.+++.++++++||.++.+....
T Consensus       258 s~~~~~~~l~~aGf~~v~~~d~s  280 (340)
T PLN02244        258 STSDYVKLAESLGLQDIKTEDWS  280 (340)
T ss_pred             CHHHHHHHHHHCCCCeeEeeeCc
Confidence            89999999999999998877543

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.93  E-value=2.8e-24  Score=158.19  Aligned_cols=166  Identities=20%  Similarity=0.229  Sum_probs=133.7

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC------ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF------SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+..+.++||++||||..+..+.+.-..      .+|+++|++|+|+..++++....++....++.++++|+++
T Consensus        91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~  170 (296)
T KOG1540|consen   91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED  170 (296)
T ss_pred             HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence            4456677777899999999999999999887543      7899999999999999999977776556679999999999


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH--------hHhh------
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--------NMMQ------  191 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~--------~~~~------  191 (235)
                      +|+++++||+..+.+.+..++++++.+++++|+|||||++.+.+++.........+.+....        .+..      
T Consensus       171 LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYq  250 (296)
T KOG1540|consen  171 LPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQ  250 (296)
T ss_pred             CCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhh
Confidence            99999999999999999999999999999999999999999999886542222222211110        0000      


Q ss_pred             --cCCceeecCHHHHHHHHHHcCCceeE
Q 026688          192 --ISGSYTFLSEREIEDLCRACGLVDFK  217 (235)
Q Consensus       192 --~~~~~~~~~~~~~~~~l~~~Gf~~~~  217 (235)
                        ..+..++.+.+++..+.+++||..+.
T Consensus       251 YLveSI~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  251 YLVESIRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             hHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence              11225677889999999999999876

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.92  E-value=2.4e-23  Score=159.18  Aligned_cols=179  Identities=23%  Similarity=0.278  Sum_probs=135.8

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      .+.+++.+...++.+|||+|||+|..+..+++. ++..+|+|+|+++.+++.+++++...+   ..++++.++|+.+.++
T Consensus        34 ~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~  110 (231)
T TIGR02752        34 RKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVHGNAMELPF  110 (231)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEechhcCCC
Confidence            355666777777899999999999999999887 456799999999999999999886544   3478999999988877


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccc-----------hhHHHHHH----h-Hhhc
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-----------PFSRLLRQ----N-MMQI  192 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~-----------~~~~~~~~----~-~~~~  192 (235)
                      +.++||+|++..++++++++.++++++.++|+|||.+++.+..........           |....+..    . ....
T Consensus       111 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  190 (231)
T TIGR02752       111 DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ  190 (231)
T ss_pred             CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH
Confidence            778999999999999999999999999999999999998876543211100           11000000    0 0001


Q ss_pred             CCceeecCHHHHHHHHHHcCCceeEEEe--eCcEEEEEEec
Q 026688          193 SGSYTFLSEREIEDLCRACGLVDFKCTR--NRGFVMFTATK  231 (235)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~k  231 (235)
                      .....+++.+++.++++++||+++++..  .+....++++|
T Consensus       191 ~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       191 ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence            1224567899999999999999877653  45677788776

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.92  E-value=3.9e-24  Score=157.40  Aligned_cols=150  Identities=17%  Similarity=0.251  Sum_probs=120.2

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .++.+|||+|||-|.++..+++.+.  .|+|+|+++.+++.|+.+..+.+.    .+++.+...+++....++||+|+|.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~gv----~i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESGV----NIDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhccc----cccchhhhHHHHHhcCCCccEEEEh
Confidence            4589999999999999999999985  999999999999999999877643    5778888887765445899999999


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHH-----HHhHhh--cCCceeecCHHHHHHHHHHcC
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-----RQNMMQ--ISGSYTFLSEREIEDLCRACG  212 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~l~~~G  212 (235)
                      .+++|+++|+.+++.|.+++||||.+++++++...    .++...+     .-.+..  ......++-++++..++...|
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~----ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~  207 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTL----KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN  207 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCH----HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence            99999999999999999999999999999998632    2221111     111111  112255788999999999989


Q ss_pred             CceeEEE
Q 026688          213 LVDFKCT  219 (235)
Q Consensus       213 f~~~~~~  219 (235)
                      +.+....
T Consensus       208 ~~~~~~~  214 (243)
T COG2227         208 LKIIDRK  214 (243)
T ss_pred             ceEEeec
Confidence            8876654

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.91  E-value=1.3e-22  Score=157.11  Aligned_cols=167  Identities=17%  Similarity=0.216  Sum_probs=131.1

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      |+..+..+.++..+...++.+|||+|||+|..+..+++.. .++|+++|+++.+++.++++...     ..++.+.+.|+
T Consensus        35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~  108 (263)
T PTZ00098         35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDI  108 (263)
T ss_pred             CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCc
Confidence            4445667788888888888999999999999999887754 46999999999999999987653     34789999999


Q ss_pred             ccCCCCCCceeEEEecccccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE  201 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (235)
                      .+.+++.++||+|++..+++|++  ++..+++++.++|+|||.+++.++......   .+...+......  ....+.++
T Consensus       109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~---~~~~~~~~~~~~--~~~~~~~~  183 (263)
T PTZ00098        109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIE---NWDEEFKAYIKK--RKYTLIPI  183 (263)
T ss_pred             ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccccc---CcHHHHHHHHHh--cCCCCCCH
Confidence            88888888999999999988886  678999999999999999999987654311   122222221111  12345789


Q ss_pred             HHHHHHHHHcCCceeEEEee
Q 026688          202 REIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~~~~~~~  221 (235)
                      .++.++|+++||+++.....
T Consensus       184 ~~~~~~l~~aGF~~v~~~d~  203 (263)
T PTZ00098        184 QEYGDLIKSCNFQNVVAKDI  203 (263)
T ss_pred             HHHHHHHHHCCCCeeeEEeC
Confidence            99999999999998887643

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.91  E-value=2.5e-23  Score=164.06  Aligned_cols=155  Identities=17%  Similarity=0.160  Sum_probs=119.5

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.|+++....+.  ..++.+.+.|++++++..++||+|++..
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~~~~~dae~l~~~~~~FD~Vi~~~  206 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDPV--TSTIEYLCTTAEKLADEGRKFDAVLSLE  206 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCc--ccceeEEecCHHHhhhccCCCCEEEEhh
Confidence            457999999999999999988654  999999999999999987654332  3478999999988877678999999999


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchh-HHHHHHhHhhcCC--ceeecCHHHHHHHHHHcCCceeE
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-SRLLRQNMMQISG--SYTFLSEREIEDLCRACGLVDFK  217 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~  217 (235)
                      +++|+.++..+++++.++|+|||.+++.+.+.......... .......+.....  ...+++++++.++++++||+++.
T Consensus       207 vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~  286 (322)
T PLN02396        207 VIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE  286 (322)
T ss_pred             HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence            99999999999999999999999999998875311000000 0011111111111  23578999999999999999877


Q ss_pred             EE
Q 026688          218 CT  219 (235)
Q Consensus       218 ~~  219 (235)
                      +.
T Consensus       287 ~~  288 (322)
T PLN02396        287 MA  288 (322)
T ss_pred             Ee
Confidence            74

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.90  E-value=1.1e-22  Score=157.49  Aligned_cols=174  Identities=17%  Similarity=0.210  Sum_probs=128.3

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F  128 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~  128 (235)
                      ++.+++.+. .++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.|+++....+.  ..+++++++|+.+++ .
T Consensus        34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~--~~~v~~~~~d~~~l~~~  108 (255)
T PRK11036         34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGV--SDNMQFIHCAAQDIAQH  108 (255)
T ss_pred             HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccceEEEEcCHHHHhhh
Confidence            345555555 3468999999999999999999865  999999999999999998877654  357899999997753 4


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhH---HHHHHhHh----hcCCceeecCH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS---RLLRQNMM----QISGSYTFLSE  201 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~  201 (235)
                      ..++||+|++..+++|+.++..+++++.++|+|||.+++..++.+.........   ......+.    ........+++
T Consensus       109 ~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  188 (255)
T PRK11036        109 LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDP  188 (255)
T ss_pred             cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCH
Confidence            567899999999999999999999999999999999999877753210000000   00000000    00111335789


Q ss_pred             HHHHHHHHHcCCceeEEEeeCcEEEEE
Q 026688          202 REIEDLCRACGLVDFKCTRNRGFVMFT  228 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~~~~~~~~~~~~~~  228 (235)
                      +++.++++++||+++.......+.-++
T Consensus       189 ~~l~~~l~~aGf~~~~~~gi~~~~~~~  215 (255)
T PRK11036        189 EQVYQWLEEAGWQIMGKTGVRVFHDYL  215 (255)
T ss_pred             HHHHHHHHHCCCeEeeeeeEEEEeecc
Confidence            999999999999998776555444444

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.89  E-value=2e-21  Score=153.70  Aligned_cols=159  Identities=19%  Similarity=0.184  Sum_probs=122.1

Q ss_pred             HHHHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           48 KEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        48 ~~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ...+.+++.... .++.+|||+|||+|..+..+++..+..+++++|+|+.+++.++++..      ..++++..+|+.+.
T Consensus        99 ~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~l  172 (340)
T PLN02490         99 DMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDL  172 (340)
T ss_pred             HHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhC
Confidence            344445554433 34689999999999999998887655799999999999999998754      23678899999988


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  206 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (235)
                      +++.++||+|++..+++|++++...++++.++|+|||.+++.......     .+..+...     .....+.+.+++.+
T Consensus       173 p~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~-----~~~~r~~~-----~~~~~~~t~eEl~~  242 (340)
T PLN02490        173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT-----FWLSRFFA-----DVWMLFPKEEEYIE  242 (340)
T ss_pred             CCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc-----hhHHHHhh-----hhhccCCCHHHHHH
Confidence            887889999999999999999999999999999999999887654321     11111100     00112457899999


Q ss_pred             HHHHcCCceeEEEeeC
Q 026688          207 LCRACGLVDFKCTRNR  222 (235)
Q Consensus       207 ~l~~~Gf~~~~~~~~~  222 (235)
                      +++++||+.+++...+
T Consensus       243 lL~~aGF~~V~i~~i~  258 (340)
T PLN02490        243 WFTKAGFKDVKLKRIG  258 (340)
T ss_pred             HHHHCCCeEEEEEEcC
Confidence            9999999988887543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.89  E-value=1.6e-21  Score=154.79  Aligned_cols=164  Identities=24%  Similarity=0.347  Sum_probs=123.2

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      .+.+...+....+++|||||||+|.++..+++.++. .|+|+|+|+.++..++......+.  ..++.+...|++++++ 
T Consensus       111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~--~~~i~~~~~d~e~lp~-  186 (322)
T PRK15068        111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGN--DQRAHLLPLGIEQLPA-  186 (322)
T ss_pred             HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEeCCHHHCCC-
Confidence            345566666566789999999999999999998763 699999999998765543222111  3478999999998887 


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcc--cchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDL  207 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (235)
                      .+.||+|+|..+++|..++..+++++++.|+|||.+++.+...+....  ..+. ..    +..........+.+++..+
T Consensus       187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~-~~----y~~~~~~~~lps~~~l~~~  261 (322)
T PRK15068        187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG-DR----YAKMRNVYFIPSVPALKNW  261 (322)
T ss_pred             cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch-hH----HhcCccceeCCCHHHHHHH
Confidence            688999999999999999999999999999999999998765443211  1111 11    1112222334589999999


Q ss_pred             HHHcCCceeEEEeeC
Q 026688          208 CRACGLVDFKCTRNR  222 (235)
Q Consensus       208 l~~~Gf~~~~~~~~~  222 (235)
                      |+++||+++++....
T Consensus       262 L~~aGF~~i~~~~~~  276 (322)
T PRK15068        262 LERAGFKDVRIVDVS  276 (322)
T ss_pred             HHHcCCceEEEEeCC
Confidence            999999988876443

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.89  E-value=3.9e-22  Score=144.09  Aligned_cols=147  Identities=27%  Similarity=0.451  Sum_probs=111.6

Q ss_pred             HHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           51 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        51 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      +.+..... ..++.+|||+|||+|.++..+++.+.  +++++|+++.+++.      .       .......+....+.+
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~------~-------~~~~~~~~~~~~~~~   75 (161)
T PF13489_consen   11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK------R-------NVVFDNFDAQDPPFP   75 (161)
T ss_dssp             HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH------T-------TSEEEEEECHTHHCH
T ss_pred             HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh------h-------hhhhhhhhhhhhhcc
Confidence            33333443 35589999999999999999988876  99999999999888      1       233334444344445


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHh--HhhcCCceeecCHHHHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN--MMQISGSYTFLSEREIEDL  207 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  207 (235)
                      .++||+|+|+.+++|++++..+++++.++|+|||++++.++....     .....+...  ......+..+++.+++.++
T Consensus        76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (161)
T PF13489_consen   76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD-----PSPRSFLKWRYDRPYGGHVHFFSPDELRQL  150 (161)
T ss_dssp             SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS-----HHHHHHHHCCGTCHHTTTTEEBBHHHHHHH
T ss_pred             ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc-----hhhhHHHhcCCcCccCceeccCCHHHHHHH
Confidence            789999999999999999999999999999999999999987632     111111111  1111256689999999999


Q ss_pred             HHHcCCceeE
Q 026688          208 CRACGLVDFK  217 (235)
Q Consensus       208 l~~~Gf~~~~  217 (235)
                      ++++||++++
T Consensus       151 l~~~G~~iv~  160 (161)
T PF13489_consen  151 LEQAGFEIVE  160 (161)
T ss_dssp             HHHTTEEEEE
T ss_pred             HHHCCCEEEE
Confidence            9999999875

...

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.89  E-value=4.6e-21  Score=147.32  Aligned_cols=183  Identities=22%  Similarity=0.280  Sum_probs=136.9

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      .....+...+...++.+|||+|||+|..+..+++.++ ..+++++|+++.+++.+++++...+.  ..++.+...|+.+.
T Consensus        38 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~  115 (239)
T PRK00216         38 VWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL--SGNVEFVQGDAEAL  115 (239)
T ss_pred             HHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc--ccCeEEEecccccC
Confidence            3344555555555678999999999999999998875 57999999999999999998765432  34688999999887


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHH--------HHhHhh-------
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL--------RQNMMQ-------  191 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~--------~~~~~~-------  191 (235)
                      +.+.+.||+|++..+++++.++..+++++.++|+|||.+++.+...............+        ...+..       
T Consensus       116 ~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (239)
T PRK00216        116 PFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSY  195 (239)
T ss_pred             CCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence            76667899999999999999999999999999999999999877653221111100000        000000       


Q ss_pred             -cCCceeecCHHHHHHHHHHcCCceeEEEe--eCcEEEEEEecC
Q 026688          192 -ISGSYTFLSEREIEDLCRACGLVDFKCTR--NRGFVMFTATKP  232 (235)
Q Consensus       192 -~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~k~  232 (235)
                       ......+++.+++.++++++||+++....  .+...++++.||
T Consensus       196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~  239 (239)
T PRK00216        196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP  239 (239)
T ss_pred             HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence             00013456889999999999999887764  467888999886

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.89  E-value=1.1e-21  Score=151.99  Aligned_cols=156  Identities=17%  Similarity=0.111  Sum_probs=117.8

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      ...+++.+...++.+|||+|||+|.++..+++..|..+|+|+|+|+.+++.|+++          ++++.++|+.+++ +
T Consensus        18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~-~   86 (255)
T PRK14103         18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWK-P   86 (255)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCC-C
Confidence            3456666776678999999999999999999987777999999999999999752          4778899998764 4


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHH--HhHh----hc--CCceeecCH
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR--QNMM----QI--SGSYTFLSE  201 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~--~~~~----~~--~~~~~~~~~  201 (235)
                      .++||+|+++.+++|++++..++++++++|+|||.+++..+.... .........+.  ..|.    ..  .....+.++
T Consensus        87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  165 (255)
T PRK14103         87 KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRVGAVVQTP  165 (255)
T ss_pred             CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhcccccccCcCCCCH
Confidence            578999999999999999999999999999999999997654211 11111111111  0011    11  112345689


Q ss_pred             HHHHHHHHHcCCceeE
Q 026688          202 REIEDLCRACGLVDFK  217 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~~~  217 (235)
                      +++.++|+++||.+..
T Consensus       166 ~~~~~~l~~aGf~v~~  181 (255)
T PRK14103        166 AGYAELLTDAGCKVDA  181 (255)
T ss_pred             HHHHHHHHhCCCeEEE
Confidence            9999999999997543

>TIGR00452 methyltransferase, putative

Probab=99.89  E-value=2.9e-21  Score=151.72  Aligned_cols=161  Identities=22%  Similarity=0.302  Sum_probs=120.0

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      ..+...+...++++|||+|||+|.++..++..++ ..|+|+|+|+.++..++..-.....  ..++.+...++.+++.. 
T Consensus       111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~--~~~v~~~~~~ie~lp~~-  186 (314)
T TIGR00452       111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDN--DKRAILEPLGIEQLHEL-  186 (314)
T ss_pred             HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhcc--CCCeEEEECCHHHCCCC-
Confidence            4556666666689999999999999999988875 3799999999998765432211111  34678888888887753 


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcc--cchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      .+||+|++..+++|.+++..++++++++|+|||.|++.+...+....  ..+. .++    ..........+..++..+|
T Consensus       187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-~ry----~k~~nv~flpS~~~L~~~L  261 (314)
T TIGR00452       187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-DRY----AKMKNVYFIPSVSALKNWL  261 (314)
T ss_pred             CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-HHH----HhccccccCCCHHHHHHHH
Confidence            58999999999999999999999999999999999998876543211  1111 111    1112223456899999999


Q ss_pred             HHcCCceeEEEe
Q 026688          209 RACGLVDFKCTR  220 (235)
Q Consensus       209 ~~~Gf~~~~~~~  220 (235)
                      +++||+.+++..
T Consensus       262 ~~aGF~~V~i~~  273 (314)
T TIGR00452       262 EKVGFENFRILD  273 (314)
T ss_pred             HHCCCeEEEEEe
Confidence            999999988764

Known examples to date are restricted to the proteobacteria.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.89  E-value=1.3e-21  Score=150.53  Aligned_cols=187  Identities=13%  Similarity=0.151  Sum_probs=131.3

Q ss_pred             CCCCCCHHHHHHHHhhcC--CCCCCeEEEecCCCchHHHHHHHc--CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe
Q 026688           41 GGFPGPEKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENF  116 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~  116 (235)
                      ...|........+...+.  ..++.+|||+|||+|..+..+++.  .+..+++++|+|+.|++.|++++...+.  ..++
T Consensus        34 ~~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~--~~~v  111 (247)
T PRK15451         34 RSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA--PTPV  111 (247)
T ss_pred             hcCCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCe
Confidence            334556655555443321  234689999999999999988873  4678999999999999999999876543  3479


Q ss_pred             eEEecccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh----
Q 026688          117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM----  190 (235)
Q Consensus       117 ~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~----  190 (235)
                      ++.++|+.+.++  ..+|+|+++.+++|+++.  ..++++++++|+|||.+++.+..........+....++..+.    
T Consensus       112 ~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g  189 (247)
T PRK15451        112 DVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANG  189 (247)
T ss_pred             EEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcC
Confidence            999999988765  358999999999998754  478999999999999999988654332222222111111110    


Q ss_pred             -----------hcCCceeecCHHHHHHHHHHcCCceeEEE-eeCcEEEEEEec
Q 026688          191 -----------QISGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATK  231 (235)
Q Consensus       191 -----------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~~~~~~~k  231 (235)
                                 .........+.++..++|+++||+.+... ..-.+..++|.|
T Consensus       190 ~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k  242 (247)
T PRK15451        190 YSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALK  242 (247)
T ss_pred             CCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHHHHHHHhHHHHhhee
Confidence                       01112345689999999999999876654 233444555555

>TIGR00740 methyltransferase, putative

Probab=99.88  E-value=4.5e-22  Score=152.69  Aligned_cols=171  Identities=13%  Similarity=0.139  Sum_probs=124.6

Q ss_pred             CCCHHHHHHHHhhcC--CCCCCeEEEecCCCchHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEE
Q 026688           44 PGPEKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  119 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~  119 (235)
                      |......+.+..+..  ..++.+|||+|||+|..+..++++.  +.++++|+|+|+.+++.|++++...+.  ..++++.
T Consensus        34 p~y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~  111 (239)
T TIGR00740        34 PGYSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEIL  111 (239)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEE
Confidence            444555554443321  2346799999999999999998863  578999999999999999998876532  3478999


Q ss_pred             ecccccCCCCCCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh-------
Q 026688          120 RADISRLPFASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM-------  190 (235)
Q Consensus       120 ~~d~~~~~~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~-------  190 (235)
                      ++|+.+.+++  .+|+|++..+++|+++  ...+++++.++|+|||.+++.+..........+....++..+.       
T Consensus       112 ~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~  189 (239)
T TIGR00740       112 CNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSE  189 (239)
T ss_pred             ECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCH
Confidence            9999887754  5899999999999864  3689999999999999999998755332222222222222111       


Q ss_pred             --------hcCCceeecCHHHHHHHHHHcCCceeEE
Q 026688          191 --------QISGSYTFLSEREIEDLCRACGLVDFKC  218 (235)
Q Consensus       191 --------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  218 (235)
                              .........+.+++.++++++||+.+..
T Consensus       190 ~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~  225 (239)
T TIGR00740       190 LEISQKRTALENVMRTDSIETHKARLKNVGFSHVEL  225 (239)
T ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHHH
Confidence                    1112345789999999999999986554

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.88  E-value=7.2e-21  Score=159.85  Aligned_cols=161  Identities=19%  Similarity=0.203  Sum_probs=126.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+.+.+...++.+|||+|||+|..+..+++.. .++|+|+|+|+.+++.|+++....    ..++.+.+.|+...++
T Consensus       254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~  328 (475)
T PLN02336        254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY  328 (475)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence            44566666666667899999999999999888765 569999999999999998876432    3478999999988877


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      +.++||+|++..+++|++++..++++++++|+|||.+++.++..........+..    .+...  .....+.+++.+++
T Consensus       329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~----~~~~~--g~~~~~~~~~~~~l  402 (475)
T PLN02336        329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAE----YIKQR--GYDLHDVQAYGQML  402 (475)
T ss_pred             CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHH----HHHhc--CCCCCCHHHHHHHH
Confidence            7789999999999999999999999999999999999999876543221111111    11111  13467899999999


Q ss_pred             HHcCCceeEEEe
Q 026688          209 RACGLVDFKCTR  220 (235)
Q Consensus       209 ~~~Gf~~~~~~~  220 (235)
                      +++||+++....
T Consensus       403 ~~aGF~~i~~~d  414 (475)
T PLN02336        403 KDAGFDDVIAED  414 (475)
T ss_pred             HHCCCeeeeeec
Confidence            999999886653

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.88  E-value=7.7e-21  Score=146.99  Aligned_cols=154  Identities=28%  Similarity=0.368  Sum_probs=120.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      ...+.+.+.+...+..+|||+|||+|.++..+.+.+  .+++++|+|+.+++.++++..        ...+.++|+..++
T Consensus        29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~   98 (251)
T PRK10258         29 QSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLP   98 (251)
T ss_pred             HHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCc
Confidence            344566666665567899999999999999998865  499999999999999988632        3467889998888


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  207 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (235)
                      +++++||+|+++.++++.+++..++.++.++|+|||.++++++....    .+.....+...........+++.+++..+
T Consensus        99 ~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~----~~el~~~~~~~~~~~~~~~~~~~~~l~~~  174 (251)
T PRK10258         99 LATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS----LPELHQAWQAVDERPHANRFLPPDAIEQA  174 (251)
T ss_pred             CCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc----hHHHHHHHHHhccCCccccCCCHHHHHHH
Confidence            88889999999999999999999999999999999999999877542    11112222211222234567899999999


Q ss_pred             HHHcCCce
Q 026688          208 CRACGLVD  215 (235)
Q Consensus       208 l~~~Gf~~  215 (235)
                      +...|+..
T Consensus       175 l~~~~~~~  182 (251)
T PRK10258        175 LNGWRYQH  182 (251)
T ss_pred             HHhCCcee
Confidence            99888764

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.87  E-value=5.9e-20  Score=143.69  Aligned_cols=155  Identities=21%  Similarity=0.288  Sum_probs=119.6

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEE
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  136 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i  136 (235)
                      ...++.+|||+|||+|..+..+++. ++..+|+++|+++.+++.|+++....+   ..++++...|+.+++++.+.||+|
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~l~~~~~~fD~V  150 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEALPVADNSVDVI  150 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhhCCCCCCceeEE
Confidence            3456889999999999988776665 555689999999999999999887654   347889999998888777899999


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCcee
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF  216 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  216 (235)
                      +++.+++|.++..++++++.++|+|||.+++.+....... ........ ..+.  ......++..++.++|+++||..+
T Consensus       151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~~~~~~~-~~~~--~~~~~~~~~~e~~~~l~~aGf~~v  226 (272)
T PRK11873        151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGEL-PEEIRNDA-ELYA--GCVAGALQEEEYLAMLAEAGFVDI  226 (272)
T ss_pred             EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCC-CHHHHHhH-HHHh--ccccCCCCHHHHHHHHHHCCCCce
Confidence            9999999999999999999999999999999887653311 11111111 1111  112235678999999999999887


Q ss_pred             EEE
Q 026688          217 KCT  219 (235)
Q Consensus       217 ~~~  219 (235)
                      .+.
T Consensus       227 ~i~  229 (272)
T PRK11873        227 TIQ  229 (272)
T ss_pred             EEE
Confidence            664

>PRK08317 hypothetical protein; Provisional

Probab=99.87  E-value=2.4e-20  Score=143.36  Aligned_cols=170  Identities=28%  Similarity=0.297  Sum_probs=129.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..+++.. +.++++++|+++.+++.++++....    ..++.+...|+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~   79 (241)
T PRK08317          4 FRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDAD   79 (241)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccc
Confidence            34455667777787778999999999999999998876 6679999999999999999873322    347889999998


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCc---ccchhHHHHHHhHhhcCCceeecCH
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF---NLIPFSRLLRQNMMQISGSYTFLSE  201 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  201 (235)
                      ..+++.+.||+|++..+++|+.++..+++++.++|+|||.+++.++......   ........+...+..  ......+.
T Consensus        80 ~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  157 (241)
T PRK08317         80 GLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--HFADPWLG  157 (241)
T ss_pred             cCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh--cCCCCcHH
Confidence            8777778999999999999999999999999999999999999886432210   111122222222221  11233556


Q ss_pred             HHHHHHHHHcCCceeEEEee
Q 026688          202 REIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~~~~~~~  221 (235)
                      ..+..+++++||.++.....
T Consensus       158 ~~~~~~l~~aGf~~~~~~~~  177 (241)
T PRK08317        158 RRLPGLFREAGLTDIEVEPY  177 (241)
T ss_pred             HHHHHHHHHcCCCceeEEEE
Confidence            78999999999998766543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.87  E-value=9e-21  Score=144.61  Aligned_cols=186  Identities=20%  Similarity=0.355  Sum_probs=133.8

Q ss_pred             hhhhcccccccc--cccceecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCH
Q 026688           18 TEFFRMPFMSFI--YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE   95 (235)
Q Consensus        18 ~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~   95 (235)
                      .+|.++++.-.+  .+.-|++.+.+          +.+...+..-.+++|||||||.|+++..++++++ ..|+|+|.++
T Consensus        80 ~PWRKGPf~l~gi~IDtEWrSd~KW----------~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~  148 (315)
T PF08003_consen   80 MPWRKGPFSLFGIHIDTEWRSDWKW----------DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSP  148 (315)
T ss_pred             CCcccCCcccCCEeecccccccchH----------HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCCh
Confidence            456666655444  45567766543          5666677666789999999999999999999986 4799999998


Q ss_pred             HHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCC
Q 026688           96 NMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP  175 (235)
Q Consensus        96 ~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~  175 (235)
                      ....+.+-.-.-.+.  ...+......++++|. .+.||+|+|.++++|..+|...|+++++.|+|||.+++.+...++.
T Consensus       149 lf~~QF~~i~~~lg~--~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~  225 (315)
T PF08003_consen  149 LFYLQFEAIKHFLGQ--DPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD  225 (315)
T ss_pred             HHHHHHHHHHHHhCC--CccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence            766654321111111  2233344356677775 6889999999999999999999999999999999999999887654


Q ss_pred             cccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          176 FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      ....-....   .+..........|...+..+|+++||+.+++..
T Consensus       226 ~~~~L~P~~---rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~  267 (315)
T PF08003_consen  226 ENTVLVPED---RYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD  267 (315)
T ss_pred             CceEEccCC---cccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence            332211111   112233445566999999999999999888763

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.87  E-value=5.8e-20  Score=139.73  Aligned_cols=176  Identities=22%  Similarity=0.311  Sum_probs=130.5

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      ..+.+.+...++.+|||+|||+|..+..+++..+. .+++++|+++.+++.++++.. .    ..++++...|+.+.+++
T Consensus        29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~  103 (223)
T TIGR01934        29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFE  103 (223)
T ss_pred             HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCC
Confidence            44555555556889999999999999999998865 689999999999999998765 1    44788999999887776


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH----hh----cC--------
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM----MQ----IS--------  193 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~----~~----~~--------  193 (235)
                      .+.||+|++..++++..++..+++.+.+.|+|||.+++.+...............+...+    ..    ..        
T Consensus       104 ~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (223)
T TIGR01934       104 DNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPE  183 (223)
T ss_pred             CCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHH
Confidence            678999999999999999999999999999999999998875432211111111110000    00    00        


Q ss_pred             CceeecCHHHHHHHHHHcCCceeEEEe--eCcEEEEEEec
Q 026688          194 GSYTFLSEREIEDLCRACGLVDFKCTR--NRGFVMFTATK  231 (235)
Q Consensus       194 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~k  231 (235)
                      ....+++.+++.++|+++||+++.+..  .+...+++++|
T Consensus       184 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       184 SIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             HHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence            012356889999999999999876654  33456777764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.87  E-value=8.4e-22  Score=146.11  Aligned_cols=152  Identities=21%  Similarity=0.279  Sum_probs=116.0

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCC----CeeEEecccccCCCCCCceeEEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE----NFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      +++|||+|||.|-++..|++.+.  +|+|+|+++.+++.|+++....+.. ..    ++++.+.|++...   +.||+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~~-~~~~~y~l~~~~~~~E~~~---~~fDaVv  163 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPVL-EGAIAYRLEYEDTDVEGLT---GKFDAVV  163 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCchh-ccccceeeehhhcchhhcc---cccceee
Confidence            47899999999999999999986  9999999999999999996554321 12    3667777777653   4599999


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCccc-chhHHHHHHhHhhcCCc--eeecCHHHHHHHHHHcCCc
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL-IPFSRLLRQNMMQISGS--YTFLSEREIEDLCRACGLV  214 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~Gf~  214 (235)
                      |..+++|+.|+..+++.+.+.|+|||.+++++.++...... .-+.......+.....|  ..+.++.++..+++.+++.
T Consensus       164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~  243 (282)
T KOG1270|consen  164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ  243 (282)
T ss_pred             eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence            99999999999999999999999999999999887532111 11222222112222222  5588999999999999987


Q ss_pred             eeEEE
Q 026688          215 DFKCT  219 (235)
Q Consensus       215 ~~~~~  219 (235)
                      +..+.
T Consensus       244 v~~v~  248 (282)
T KOG1270|consen  244 VNDVV  248 (282)
T ss_pred             hhhhh
Confidence            65543

>PRK05785 hypothetical protein; Provisional

Probab=99.86  E-value=2.7e-20  Score=141.00  Aligned_cols=157  Identities=20%  Similarity=0.127  Sum_probs=111.7

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +.+|||+|||+|..+..+++.. ..+|+|+|+|++|++.|+++           ..+.++|++++|+++++||+|++..+
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~  119 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSFA  119 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecCh
Confidence            6899999999999999999885 35999999999999999863           12567899999998999999999999


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH--------hHhh--------cCCceeecCHHHHH
Q 026688          142 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--------NMMQ--------ISGSYTFLSEREIE  205 (235)
Q Consensus       142 l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~  205 (235)
                      ++|++++++.++++.|+|||.  +.+.+...........+...+..        .+..        ......+.+.+++.
T Consensus       120 l~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~  197 (226)
T PRK05785        120 LHASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHR  197 (226)
T ss_pred             hhccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999993  22333332111111111111000        0000        11124567889999


Q ss_pred             HHHHHcC-CceeEEEeeCcEEEEEEecC
Q 026688          206 DLCRACG-LVDFKCTRNRGFVMFTATKP  232 (235)
Q Consensus       206 ~~l~~~G-f~~~~~~~~~~~~~~~~~k~  232 (235)
                      ++++++| +...+....|...+++++|.
T Consensus       198 ~~~~~~~~~~~~~~~~~G~~~~~~~~k~  225 (226)
T PRK05785        198 EIFEKYADIKVYEERGLGLVYFVVGSSR  225 (226)
T ss_pred             HHHHHHhCceEEEEccccEEEEEEEeeC
Confidence            9999964 33333346677888888874

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.86  E-value=7.1e-21  Score=136.11  Aligned_cols=107  Identities=22%  Similarity=0.441  Sum_probs=96.1

Q ss_pred             CCCeEEEecCCCchHHHHHH-HcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~-~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~  137 (235)
                      .+.+|||+|||+|.++..++ +..+..+++|+|+|+.+++.|++++...+   ..++++.+.|+.+++  ++ ++||+|+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I~   78 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDIII   78 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEEE
Confidence            47899999999999999999 55677899999999999999999888765   348999999999876  44 7999999


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +..+++|+.++..+++++.++|+++|.+++..+.
T Consensus        79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9999999999999999999999999999999887

...

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.86  E-value=3.6e-20  Score=140.99  Aligned_cols=146  Identities=17%  Similarity=0.157  Sum_probs=118.1

Q ss_pred             CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccc
Q 026688           63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI  142 (235)
Q Consensus        63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l  142 (235)
                      ++|||+|||+|..+..+++..+..+++|+|+|+.+++.+++++...+.  ..++++...|+...+++ ++||+|++..++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl--~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l   77 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL--QGRIRIFYRDSAKDPFP-DTYDLVFGFEVI   77 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC--CcceEEEecccccCCCC-CCCCEeehHHHH
Confidence            479999999999999999988777999999999999999999877654  45789999999766554 589999999999


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688          143 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       143 ~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                      +|+.+...+++++.++|+|||.+++.++..+...   +..        .........+..+|.++++++||++++....+
T Consensus        78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~--------~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~  146 (224)
T smart00828       78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLS---AIE--------HEETTSYLVTREEWAELLARNNLRVVEGVDAS  146 (224)
T ss_pred             HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCc---ccc--------ccccccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence            9999999999999999999999999887542110   000        00011235788999999999999998877544

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.85  E-value=3e-20  Score=143.81  Aligned_cols=162  Identities=21%  Similarity=0.185  Sum_probs=115.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      .++.+.+.+...++.+|||||||.|.++..++++. +++|+|+.+|++..+.+++++...++  ..++++...|..+.+ 
T Consensus        50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~~-  125 (273)
T PF02353_consen   50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDLP-  125 (273)
T ss_dssp             HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG---
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeeccccC-
Confidence            34567788888899999999999999999999995 46999999999999999999998776  457999999998765 


Q ss_pred             CCCceeEEEecccccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCccc------chhHHHHHHhHhhcCCceeecC
Q 026688          129 ASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL------IPFSRLLRQNMMQISGSYTFLS  200 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  200 (235)
                        .+||.|++..+++|+.  +...+++++.++|+|||.+++...........      ..+..+   .   ..+.....+
T Consensus       126 --~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~k---y---iFPgg~lps  197 (273)
T PF02353_consen  126 --GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRK---Y---IFPGGYLPS  197 (273)
T ss_dssp             ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHH---H---TSTTS---B
T ss_pred             --CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEE---e---eCCCCCCCC
Confidence              3899999999999995  44799999999999999999887765331100      011111   1   112334567


Q ss_pred             HHHHHHHHHHcCCceeEEEeeC
Q 026688          201 EREIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       201 ~~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                      ..++...+++.||++......+
T Consensus       198 ~~~~~~~~~~~~l~v~~~~~~~  219 (273)
T PF02353_consen  198 LSEILRAAEDAGLEVEDVENLG  219 (273)
T ss_dssp             HHHHHHHHHHTT-EEEEEEE-H
T ss_pred             HHHHHHHHhcCCEEEEEEEEcC
Confidence            8899999999999988776543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.85  E-value=9.8e-21  Score=124.52  Aligned_cols=95  Identities=35%  Similarity=0.579  Sum_probs=83.6

Q ss_pred             EEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccccccc
Q 026688           66 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW  145 (235)
Q Consensus        66 LdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~  145 (235)
                      ||+|||+|..+..++++ +..+++++|+++.+++.++++...      .++.+...|+.++|+++++||+|++..+++|+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence            89999999999999999 456999999999999999998754      34669999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhccCCcEEEE
Q 026688          146 SSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       146 ~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      +++.++++++.|+|||||++++
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEeC
Confidence            8889999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.85  E-value=9.9e-20  Score=135.37  Aligned_cols=147  Identities=20%  Similarity=0.259  Sum_probs=111.0

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      .+.+.+...++.+|||+|||+|..+..+++++.  +|+|+|+|+.+++.+++.....+   ..++++.+.|+.+.+++ +
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~   94 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNLTFD-G   94 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhCCcC-C
Confidence            444455555678999999999999999999865  99999999999999999887654   24588888999876654 6


Q ss_pred             ceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH
Q 026688          132 SIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  209 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  209 (235)
                      +||+|++..+++|++.  ...+++++.++|+|||.+++.........   +.          ..+....++.+++.+.++
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~---~~----------~~~~~~~~~~~el~~~~~  161 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY---PC----------TVGFPFAFKEGELRRYYE  161 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC---CC----------CCCCCCccCHHHHHHHhC
Confidence            7999999999988763  46899999999999999766443321110   00          011223478899998887


Q ss_pred             HcCCceeEEE
Q 026688          210 ACGLVDFKCT  219 (235)
Q Consensus       210 ~~Gf~~~~~~  219 (235)
                        ||+++...
T Consensus       162 --~~~~~~~~  169 (197)
T PRK11207        162 --GWEMVKYN  169 (197)
T ss_pred             --CCeEEEee
Confidence              89876653

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.85  E-value=1.2e-19  Score=138.34  Aligned_cols=162  Identities=18%  Similarity=0.169  Sum_probs=131.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      .++.+.+.+...++.+|||||||.|.++..+++.. +++|+|+++|+++.+.+++++...++  ..++++...|..+.. 
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~~-  135 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDFE-  135 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEeccccccc-
Confidence            45677888899999999999999999999999987 67999999999999999999998886  458999999998764 


Q ss_pred             CCCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCc--ccchhHHHHHHhHhhcCCceeecCHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF--NLIPFSRLLRQNMMQISGSYTFLSEREI  204 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (235)
                        +.||.|++..+++|+..  ...+++.+.++|+|||.+++...+.....  ...+|..+.      ..+.....+..++
T Consensus       136 --e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~y------iFPgG~lPs~~~i  207 (283)
T COG2230         136 --EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKY------IFPGGELPSISEI  207 (283)
T ss_pred             --cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHh------CCCCCcCCCHHHH
Confidence              44999999999999976  57999999999999999999888764422  112222211      2233445678899


Q ss_pred             HHHHHHcCCceeEEEeeC
Q 026688          205 EDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~~~~  222 (235)
                      .....++||.+......+
T Consensus       208 ~~~~~~~~~~v~~~~~~~  225 (283)
T COG2230         208 LELASEAGFVVLDVESLR  225 (283)
T ss_pred             HHHHHhcCcEEehHhhhc
Confidence            999999999987766443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.84  E-value=2.2e-20  Score=126.78  Aligned_cols=107  Identities=28%  Similarity=0.401  Sum_probs=88.3

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc-ccCCCCCCceeEEEec
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~i~~~  139 (235)
                      |+.+|||+|||+|.++..+++..+..+++++|+|+.+++.++++....+.  ..++++.+.|+ ..... .+.||+|++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~-~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL--SDRITFVQGDAEFDPDF-LEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT--TTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECccccCccc-CCCCCEEEEC
Confidence            47899999999999999999966677999999999999999999955443  56899999999 33332 3679999999


Q ss_pred             c-ccccc---CChHHHHHHHHHhccCCcEEEEEEe
Q 026688          140 A-AIHCW---SSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       140 ~-~l~~~---~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      . +++++   ++..++++++.+.|+|||++++.++
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            8 44444   3446899999999999999999763

...

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.84  E-value=4.2e-19  Score=141.06  Aligned_cols=162  Identities=15%  Similarity=0.132  Sum_probs=122.3

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      .+.+.+.....+..+|||+|||+|.++..+++++|..+++++|. +.+++.+++++...+.  ..++++..+|+.+.+++
T Consensus       138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl--~~rv~~~~~d~~~~~~~  214 (306)
T TIGR02716       138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKESYP  214 (306)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc--cceEEEEecCccCCCCC
Confidence            34455556666678999999999999999999999889999998 7899999998887665  45799999999765554


Q ss_pred             CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhc---CCceeecCHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI---SGSYTFLSEREI  204 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  204 (235)
                        .+|+|++..++|++++.  .++++++++.|+|||++++.+.......  .+....+.......   .....+.+.+++
T Consensus       215 --~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  290 (306)
T TIGR02716       215 --EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFDYLSHYILGAGMPFSVLGFKEQARY  290 (306)
T ss_pred             --CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CchhhHHHHHHHHcccccccccCCCHHHH
Confidence              36999999999988765  4799999999999999999987654322  22222222211111   111234457999


Q ss_pred             HHHHHHcCCceeEE
Q 026688          205 EDLCRACGLVDFKC  218 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~  218 (235)
                      .++|+++||+.+.+
T Consensus       291 ~~ll~~aGf~~v~~  304 (306)
T TIGR02716       291 KEILESLGYKDVTM  304 (306)
T ss_pred             HHHHHHcCCCeeEe
Confidence            99999999997764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.84  E-value=1.3e-19  Score=129.63  Aligned_cols=174  Identities=18%  Similarity=0.232  Sum_probs=125.4

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCee-EEecccccCC-C
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP-F  128 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~d~~~~~-~  128 (235)
                      ..+..++.......|||+|||+|..-...- ..|..+|+++|+++.|-+.+.+.+++..   ..++. |+.++.+++| +
T Consensus        66 s~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l  141 (252)
T KOG4300|consen   66 SGIYYFLGKSGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQL  141 (252)
T ss_pred             hhhHHHhcccCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCccc
Confidence            334445666656789999999998877653 3456799999999999999999888763   45665 8999999987 7


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      +++++|.|++..+++...++.+.|+++.++|+|||.+++.++..........+.+....-..........++. +..+.|
T Consensus       142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltr-d~~e~L  220 (252)
T KOG4300|consen  142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTR-DTGELL  220 (252)
T ss_pred             ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEeh-hHHHHh
Confidence            8899999999999999999999999999999999999999988753222222222221111112222334444 456778


Q ss_pred             HHcCCceeEEEeeC--cEEEEEE
Q 026688          209 RACGLVDFKCTRNR--GFVMFTA  229 (235)
Q Consensus       209 ~~~Gf~~~~~~~~~--~~~~~~~  229 (235)
                      +++-|+........  ..+.+++
T Consensus       221 eda~f~~~~~kr~~~~ttw~~V~  243 (252)
T KOG4300|consen  221 EDAEFSIDSCKRFNFGTTWVIVE  243 (252)
T ss_pred             hhcccccchhhcccCCceEEEEe
Confidence            89999887765433  3444343

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.83  E-value=2.7e-19  Score=137.49  Aligned_cols=142  Identities=27%  Similarity=0.422  Sum_probs=115.1

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      .+.+|||+|||+|.++..+++.++..+++++|+++.+++.++++..       .++.+...|+.+.+++.++||+|++..
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~  106 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNL  106 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence            3579999999999999999999888889999999999999988653       367889999998887778999999999


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      +++|..++..+++++.++|+|||.+++.++.....       ..+...+..  ....+.+.+++.+++.++ |..+...
T Consensus       107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~l~~~-f~~~~~~  175 (240)
T TIGR02072       107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HELRQSFGQ--HGLRYLSLDELKALLKNS-FELLTLE  175 (240)
T ss_pred             hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HHHHHHHHH--hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence            99999999999999999999999999988765321       111111111  224567889999999988 8766554

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.83  E-value=1.3e-18  Score=127.44  Aligned_cols=136  Identities=21%  Similarity=0.162  Sum_probs=110.2

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +.+|||+|||+|..+..+++..+.++|+++|+++.+++.|+++....+.   .++++...|+.+.+. .++||+|++.. 
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~~~~~d~~~~~~-~~~fDlV~~~~-  120 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL---KNVTVVHGRAEEFGQ-EEKFDVVTSRA-  120 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC---CCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence            7899999999999999999877788999999999999999999888763   359999999988765 67899999864 


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE--
Q 026688          142 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--  219 (235)
Q Consensus       142 l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--  219 (235)
                         +.+...+++.+.++|+|||.+++.....                           ...++..+.+..|+.+..+.  
T Consensus       121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~~---------------------------~~~~l~~~~~~~~~~~~~~~~~  170 (187)
T PRK00107        121 ---VASLSDLVELCLPLLKPGGRFLALKGRD---------------------------PEEEIAELPKALGGKVEEVIEL  170 (187)
T ss_pred             ---ccCHHHHHHHHHHhcCCCeEEEEEeCCC---------------------------hHHHHHHHHHhcCceEeeeEEE
Confidence               4567789999999999999999875432                           34557777788899866655  


Q ss_pred             ----eeCcEEEEEEecC
Q 026688          220 ----RNRGFVMFTATKP  232 (235)
Q Consensus       220 ----~~~~~~~~~~~k~  232 (235)
                          ..+...+.+.+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~  187 (187)
T PRK00107        171 TLPGLDGERHLVIIRKK  187 (187)
T ss_pred             ecCCCCCcEEEEEEecC
Confidence                2345566666663

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.83  E-value=7.1e-19  Score=136.60  Aligned_cols=157  Identities=15%  Similarity=0.145  Sum_probs=116.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.++..+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.++++.        .++.+...|+.... 
T Consensus        19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~-   89 (258)
T PRK01683         19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ-   89 (258)
T ss_pred             HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC-
Confidence            345666666666689999999999999999999887789999999999999998863        35788899987654 


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHH------HHhHhhcC-CceeecCH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL------RQNMMQIS-GSYTFLSE  201 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~  201 (235)
                      +.++||+|+++.+++|++++..+++++.++|+|||.+++..+..... ........+      ...+.... ....+.++
T Consensus        90 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  168 (258)
T PRK01683         90 PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDE-PSHVLMREVAENGPWEQNLPDRGARRAPLPPP  168 (258)
T ss_pred             CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCC-HHHHHHHHHHccCchHHHhccccccCcCCCCH
Confidence            34689999999999999999999999999999999999875432110 000001100      11111000 11244677


Q ss_pred             HHHHHHHHHcCCce
Q 026688          202 REIEDLCRACGLVD  215 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~  215 (235)
                      .++.+++.++|+.+
T Consensus       169 ~~~~~~l~~~g~~v  182 (258)
T PRK01683        169 HAYYDALAPAACRV  182 (258)
T ss_pred             HHHHHHHHhCCCce
Confidence            88999999999864

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.82  E-value=7.8e-19  Score=130.34  Aligned_cols=147  Identities=16%  Similarity=0.157  Sum_probs=109.2

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      ..+.+.+...++.+|||+|||+|.++..+++++.  +|+++|+|+.+++.++++....+.    ++.+...|+...+++ 
T Consensus        20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~~----~v~~~~~d~~~~~~~-   92 (195)
T TIGR00477        20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARENL----PLRTDAYDINAAALN-   92 (195)
T ss_pred             HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhCC----CceeEeccchhcccc-
Confidence            3455555555578999999999999999999865  999999999999999988765542    367777887665543 


Q ss_pred             CceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          131 SSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      ++||+|++..+++|++.  ...+++++.++|+|||++++.+.........             .......++++++.+++
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~-------------~~~~~~~~~~~el~~~f  159 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC-------------HMPFSFTFKEDELRQYY  159 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC-------------CCCcCccCCHHHHHHHh
Confidence            57999999999998854  3589999999999999977665432211000             00112357899999988


Q ss_pred             HHcCCceeEEE
Q 026688          209 RACGLVDFKCT  219 (235)
Q Consensus       209 ~~~Gf~~~~~~  219 (235)
                      .  +|+++...
T Consensus       160 ~--~~~~~~~~  168 (195)
T TIGR00477       160 A--DWELLKYN  168 (195)
T ss_pred             C--CCeEEEee
Confidence            6  57766554

Part of a tellurite-reducing operon tehA and tehB

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.81  E-value=2e-18  Score=130.85  Aligned_cols=162  Identities=19%  Similarity=0.243  Sum_probs=117.3

Q ss_pred             HHHHHHHHhhcC--CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           47 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        47 ~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      ....+.+.+++.  ..++.+|||+|||+|.++..+++.+.  +++|+|+|+.++..|++++...+.  ..++.+.+.|+.
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~  114 (219)
T TIGR02021        39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRDV--AGNVEFEVNDLL  114 (219)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECChh
Confidence            344455666665  34578999999999999999998754  999999999999999998876532  247899999998


Q ss_pred             cCCCCCCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh--cCCceeecC
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLS  200 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  200 (235)
                      +.+   ++||+|++..+++|++.  ...+++++.+++++++.+.+....     ........+...+..  ......+++
T Consensus       115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
T TIGR02021       115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT-----AWLAFLKMIGELFPGSSRATSAYLHP  186 (219)
T ss_pred             hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc-----hHHHHHHHHHhhCcCcccccceEEec
Confidence            765   78999999999988864  357899999998876555542211     111111111122111  122356789


Q ss_pred             HHHHHHHHHHcCCceeEEEe
Q 026688          201 EREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       201 ~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      ++++.++++++||+++....
T Consensus       187 ~~~~~~~l~~~Gf~v~~~~~  206 (219)
T TIGR02021       187 MTDLERALGELGWKIVREGL  206 (219)
T ss_pred             HHHHHHHHHHcCceeeeeec
Confidence            99999999999999887753

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK06202 hypothetical protein; Provisional

Probab=99.81  E-value=9.9e-19  Score=133.59  Aligned_cols=157  Identities=15%  Similarity=0.084  Sum_probs=110.1

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHH----cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCce
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  133 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~----~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (235)
                      ...++.+|||+|||+|.++..+++    .++..+++|+|+++.+++.|+++...      .++.+...+...++.+.++|
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~f  130 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERF  130 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCCc
Confidence            334568999999999999888875    35566999999999999999887532      24566666666555556799


Q ss_pred             eEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH-------hhcCCceeecCHHHH
Q 026688          134 DAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM-------MQISGSYTFLSEREI  204 (235)
Q Consensus       134 D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  204 (235)
                      |+|+++.++||++++  ..+++++.++++  |.+++.+....... ...+........       .......++++++++
T Consensus       131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el  207 (232)
T PRK06202        131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLA-YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAEL  207 (232)
T ss_pred             cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHH-HHHHHHHHHHhccCceeeccchHHHHhhcCHHHH
Confidence            999999999999886  379999999998  67777666553100 000000000000       011223568999999


Q ss_pred             HHHHHHcCCceeEEEeeCcE
Q 026688          205 EDLCRACGLVDFKCTRNRGF  224 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~~~~~~  224 (235)
                      .+++++ ||++.....+...
T Consensus       208 ~~ll~~-Gf~~~~~~~~~~~  226 (232)
T PRK06202        208 AALAPQ-GWRVERQWPFRYL  226 (232)
T ss_pred             HHHhhC-CCeEEeccceeeE
Confidence            999999 9998766655433

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.81  E-value=2.6e-18  Score=135.10  Aligned_cols=136  Identities=18%  Similarity=0.189  Sum_probs=105.3

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++.+|||+|||+|..+..+++.+.  +|+|+|+|+.+++.+++++...+    .++++...|+...++ .++||+|++..
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~~~  192 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILSTV  192 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEEcc
Confidence            456999999999999999998865  99999999999999998887654    267888888876554 57899999999


Q ss_pred             cccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEE
Q 026688          141 AIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  218 (235)
Q Consensus       141 ~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  218 (235)
                      +++|++.  ...+++++.++|+|||++++.......... .            .......+++.++.+.++  +|+++..
T Consensus       193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~-~------------~~p~~~~~~~~el~~~~~--~~~i~~~  257 (287)
T PRK12335        193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP-C------------PMPFSFTFKEGELKDYYQ--DWEIVKY  257 (287)
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC-C------------CCCCCcccCHHHHHHHhC--CCEEEEE
Confidence            9998863  358999999999999997776543221100 0            011234578999999886  4877665

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.80  E-value=1.6e-17  Score=122.79  Aligned_cols=142  Identities=20%  Similarity=0.190  Sum_probs=108.6

Q ss_pred             CCCCHHH-HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           43 FPGPEKE-FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        43 ~~~~~~~-~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      .|..... ...+.+.+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++...+.   .++++...
T Consensus        12 ~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~   88 (187)
T PRK08287         12 VPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPG   88 (187)
T ss_pred             CCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEec
Confidence            3334443 3445567766678899999999999999999988778999999999999999998876542   36888888


Q ss_pred             ccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688          122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE  201 (235)
Q Consensus       122 d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (235)
                      |... ++ .++||+|++.....+   ...+++.+.+.|+|||.+++.....                          -+.
T Consensus        89 d~~~-~~-~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~--------------------------~~~  137 (187)
T PRK08287         89 EAPI-EL-PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL--------------------------ENL  137 (187)
T ss_pred             Cchh-hc-CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH--------------------------hhH
Confidence            8743 33 367999998765443   4568899999999999998865432                          234


Q ss_pred             HHHHHHHHHcCCceeEE
Q 026688          202 REIEDLCRACGLVDFKC  218 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~~~~  218 (235)
                      .++.++++++||+.+..
T Consensus       138 ~~~~~~l~~~g~~~~~~  154 (187)
T PRK08287        138 HSALAHLEKCGVSELDC  154 (187)
T ss_pred             HHHHHHHHHCCCCcceE
Confidence            67778899999976554

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.79  E-value=7.3e-18  Score=120.98  Aligned_cols=149  Identities=17%  Similarity=0.304  Sum_probs=117.3

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P  127 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~  127 (235)
                      .+.|.+++.+  +.+|||+|||.|.++..|.+.. ++...|+|++++.+..|.++          .+.++++|+.+ + .
T Consensus         4 ~~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~   70 (193)
T PF07021_consen    4 LQIIAEWIEP--GSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLAD   70 (193)
T ss_pred             HHHHHHHcCC--CCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhh
Confidence            4677788877  7899999999999999998863 67999999999998888763          57799999976 3 4


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh-------------cCC
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ-------------ISG  194 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~  194 (235)
                      +++++||.||++.+++++..|+.+|+++.|+   |...+++.++..      -|..++.-.+..             ..+
T Consensus        71 f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg------~W~~R~~l~~~GrmPvt~~lPy~WYdTP  141 (193)
T PF07021_consen   71 FPDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFG------HWRNRLQLLLRGRMPVTKALPYEWYDTP  141 (193)
T ss_pred             CCCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChH------HHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence            7899999999999999999999999999777   446777776642      122222222111             223


Q ss_pred             ceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          195 SYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       195 ~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      +.++.|..+++++.++.|+++.+...
T Consensus       142 Nih~~Ti~DFe~lc~~~~i~I~~~~~  167 (193)
T PF07021_consen  142 NIHLCTIKDFEDLCRELGIRIEERVF  167 (193)
T ss_pred             CcccccHHHHHHHHHHCCCEEEEEEE
Confidence            46788999999999999999887764

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.78  E-value=2.4e-17  Score=123.45  Aligned_cols=155  Identities=20%  Similarity=0.142  Sum_probs=109.1

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC---------CCCCCCe
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENF  116 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---------~~~~~~~  116 (235)
                      +...+......+...++.+|||+|||.|..+..+++++.  .|+|+|+|+.+++.+.+......         .....++
T Consensus        19 p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v   96 (213)
T TIGR03840        19 VNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI   96 (213)
T ss_pred             CCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce
Confidence            444444444444323468999999999999999999987  99999999999998644221100         0013468


Q ss_pred             eEEecccccCCCC-CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcC
Q 026688          117 LLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS  193 (235)
Q Consensus       117 ~~~~~d~~~~~~~-~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (235)
                      ++.++|+.+++.. .+.||.|+...+++|++..  ...++.+.++|+|||++++.........               ..
T Consensus        97 ~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~---------------~~  161 (213)
T TIGR03840        97 EIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE---------------MA  161 (213)
T ss_pred             EEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC---------------CC
Confidence            9999999886532 3679999999888888644  4789999999999999888776543211               01


Q ss_pred             CceeecCHHHHHHHHHHcCCceeEE
Q 026688          194 GSYTFLSEREIEDLCRACGLVDFKC  218 (235)
Q Consensus       194 ~~~~~~~~~~~~~~l~~~Gf~~~~~  218 (235)
                      +....++++++.+++.. +|.+...
T Consensus       162 gpp~~~~~~eL~~~f~~-~~~i~~~  185 (213)
T TIGR03840       162 GPPFSVSPAEVEALYGG-HYEIELL  185 (213)
T ss_pred             CcCCCCCHHHHHHHhcC-CceEEEE
Confidence            22345889999988863 4544433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.78  E-value=2e-17  Score=126.57  Aligned_cols=164  Identities=18%  Similarity=0.246  Sum_probs=119.9

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F  128 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~  128 (235)
                      ++.+.......++.+|||+|||+|.++..+.+.+.  +++++|+++.+++.+++++...+    ..+.+...|..+.+ .
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~  110 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAE  110 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhh
Confidence            45566666566788999999999999999988754  89999999999999998876543    25677777776653 2


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchh-HHHHHHhH-h-hcCCceeecCHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-SRLLRQNM-M-QISGSYTFLSEREIE  205 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~  205 (235)
                      ..++||+|++..+++|.+++..+++.+.+.|+|||.+++..+........... .......+ . .......+++++++.
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELA  190 (233)
T ss_pred             cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHH
Confidence            34789999999999999999999999999999999999887643210000000 00000000 0 111234578999999


Q ss_pred             HHHHHcCCceeEEE
Q 026688          206 DLCRACGLVDFKCT  219 (235)
Q Consensus       206 ~~l~~~Gf~~~~~~  219 (235)
                      ++++++||+++...
T Consensus       191 ~~l~~~Gf~~v~~~  204 (233)
T PRK05134        191 AWLRQAGLEVQDIT  204 (233)
T ss_pred             HHHHHCCCeEeeee
Confidence            99999999987664

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.78  E-value=2.7e-20  Score=123.40  Aligned_cols=97  Identities=27%  Similarity=0.398  Sum_probs=66.0

Q ss_pred             EEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEeccccc
Q 026688           66 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIH  143 (235)
Q Consensus        66 LdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~~~l~  143 (235)
                      ||+|||+|.++..+++..+..+++++|+|+.+++.+++++....   ..+......+..+..  ...++||+|++..+++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence            79999999999999999888899999999999999998887754   223333333333221  1225999999999999


Q ss_pred             ccCChHHHHHHHHHhccCCcEE
Q 026688          144 CWSSPSTGVAEISRVLRPGGVF  165 (235)
Q Consensus       144 ~~~~~~~~l~~~~~~L~pgG~l  165 (235)
                      |++++..+++++.++|+|||.|
T Consensus        78 ~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhhHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.78  E-value=3.2e-17  Score=129.20  Aligned_cols=167  Identities=17%  Similarity=0.176  Sum_probs=111.4

Q ss_pred             CCHHHHHHHHhhcCC---CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC--CCCCeeEE
Q 026688           45 GPEKEFELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--PKENFLLV  119 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~  119 (235)
                      .+....+.+.+++..   .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.++++.......  ...++.+.
T Consensus       125 ~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~  202 (315)
T PLN02585        125 GHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFE  202 (315)
T ss_pred             ChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEE
Confidence            345556666666643   2468999999999999999998864  9999999999999999987653110  02357888


Q ss_pred             ecccccCCCCCCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCC--c
Q 026688          120 RADISRLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG--S  195 (235)
Q Consensus       120 ~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  195 (235)
                      ..|+...   .++||+|+|..+++|+++..  .+++.+.+ +.+||. ++.. ....  ....+...+...+.....  .
T Consensus       203 ~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~-~p~~--~~~~~l~~~g~~~~g~~~~~r  274 (315)
T PLN02585        203 ANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISF-APKT--LYYDILKRIGELFPGPSKATR  274 (315)
T ss_pred             Ecchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe-CCcc--hHHHHHHHHHhhcCCCCcCce
Confidence            8887653   47899999999999987653  45666665 445544 4433 2111  111222222222222111  1


Q ss_pred             eeecCHHHHHHHHHHcCCceeEEEee
Q 026688          196 YTFLSEREIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       196 ~~~~~~~~~~~~l~~~Gf~~~~~~~~  221 (235)
                      ..+++.++++++++++||++......
T Consensus       275 ~y~~s~eel~~lL~~AGf~v~~~~~~  300 (315)
T PLN02585        275 AYLHAEADVERALKKAGWKVARREMT  300 (315)
T ss_pred             eeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence            23458999999999999998766543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.78  E-value=2.2e-17  Score=125.62  Aligned_cols=151  Identities=18%  Similarity=0.261  Sum_probs=115.1

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC-CCceeEEEec
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~~  139 (235)
                      .+.+|||+|||+|.++..+++.+.  .++++|+++.+++.+++++...+   ..++.+...|+.+.+.. .++||+|++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~  119 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM  119 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence            478999999999999999988765  79999999999999999877643   22578888888776533 3789999999


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHH-H-hH-----hhcCCceeecCHHHHHHHHHHcC
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-Q-NM-----MQISGSYTFLSEREIEDLCRACG  212 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~-~-~~-----~~~~~~~~~~~~~~~~~~l~~~G  212 (235)
                      .+++|..++..+++.+.++|+|||.+++.......    ......+. . ..     ........+++..++.++++++|
T Consensus       120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G  195 (224)
T TIGR01983       120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTP----KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG  195 (224)
T ss_pred             hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc----hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence            99999999999999999999999999988765321    11111100 0 00     00111235678899999999999


Q ss_pred             CceeEEEe
Q 026688          213 LVDFKCTR  220 (235)
Q Consensus       213 f~~~~~~~  220 (235)
                      |+++.+..
T Consensus       196 ~~i~~~~~  203 (224)
T TIGR01983       196 LRVKDVKG  203 (224)
T ss_pred             Ceeeeeee
Confidence            99987753

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.77  E-value=2.6e-17  Score=119.80  Aligned_cols=146  Identities=18%  Similarity=0.218  Sum_probs=104.3

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      .+.+.++..++.++||+|||.|+.+..|+++|.  .|+++|+|+..++.+++.+...+    ..++..+.|+.+..++ +
T Consensus        21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~   93 (192)
T PF03848_consen   21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-E   93 (192)
T ss_dssp             HHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-T
T ss_pred             HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-C
Confidence            344455555689999999999999999999988  99999999999999988776654    3589999999887764 6


Q ss_pred             ceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH
Q 026688          132 SIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  209 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  209 (235)
                      .||+|++..+++|++..  .++++.+...++|||++++....... ....+            ......+.+.++...+.
T Consensus        94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~-d~p~~------------~~~~f~~~~~EL~~~y~  160 (192)
T PF03848_consen   94 EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETP-DYPCP------------SPFPFLLKPGELREYYA  160 (192)
T ss_dssp             TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--S-SS--S------------S--S--B-TTHHHHHTT
T ss_pred             CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccC-CCCCC------------CCCCcccCHHHHHHHhC
Confidence            89999998888887644  47899999999999999987664321 11001            11223467788888776


Q ss_pred             HcCCceeEEE
Q 026688          210 ACGLVDFKCT  219 (235)
Q Consensus       210 ~~Gf~~~~~~  219 (235)
                        ||++++..
T Consensus       161 --dW~il~y~  168 (192)
T PF03848_consen  161 --DWEILKYN  168 (192)
T ss_dssp             --TSEEEEEE
T ss_pred             --CCeEEEEE
Confidence              68776654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.77  E-value=1.9e-18  Score=124.62  Aligned_cols=115  Identities=17%  Similarity=0.200  Sum_probs=103.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      -...++..+...+..+|.|+|||+|..+..++++.|.+.++|+|-|++|++.|+++        .++++|..+|+.... 
T Consensus        18 Pa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-   88 (257)
T COG4106          18 PARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-   88 (257)
T ss_pred             cHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-
Confidence            34566777888888999999999999999999999999999999999999999887        457889999998875 


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +....|+++++.+++++++-...+..+...|.|||.|.+..+..
T Consensus        89 p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          89 PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence            46789999999999999999999999999999999999988765

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.77  E-value=7.5e-17  Score=118.38  Aligned_cols=138  Identities=14%  Similarity=0.158  Sum_probs=108.8

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      ..+.+.+...++.+|||+|||+|.++..+++.++  +++++|+++.+++.+++++...+    .++++...|..+..  .
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~   80 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--R   80 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--C
Confidence            3444555445568999999999999999999886  99999999999999999987653    35788888986643  3


Q ss_pred             CceeEEEecccccccCC---------------------hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH
Q 026688          131 SSIDAVHAGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM  189 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~  189 (235)
                      ++||+|+++..+++.++                     ...+++++.++|+|||.+++......                
T Consensus        81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------  144 (179)
T TIGR00537        81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------  144 (179)
T ss_pred             CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------
Confidence            58999999987766543                     13579999999999999998775431                


Q ss_pred             hhcCCceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688          190 MQISGSYTFLSEREIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                                ...++...+++.||....+...+
T Consensus       145 ----------~~~~~~~~l~~~gf~~~~~~~~~  167 (179)
T TIGR00537       145 ----------GEPDTFDKLDERGFRYEIVAERG  167 (179)
T ss_pred             ----------ChHHHHHHHHhCCCeEEEEEEee
Confidence                      25678899999999877666544

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.76  E-value=4.6e-17  Score=119.08  Aligned_cols=101  Identities=17%  Similarity=0.193  Sum_probs=85.1

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++.+|||+|||+|..+..++...+..+|+++|+|+.+++.++++....+   ..+++++++|+.+.+ ..++||+|++..
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---~~~i~~i~~d~~~~~-~~~~fD~I~s~~  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---LNNVEIVNGRAEDFQ-HEEQFDVITSRA  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---CCCeEEEecchhhcc-ccCCccEEEehh
Confidence            3789999999999999999888777899999999999999998887665   346999999998864 357899999865


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                       +   .+...+++.+.++|+|||.+++..
T Consensus       118 -~---~~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       118 -L---ASLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             -h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence             3   345577889999999999999864

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.76  E-value=3.9e-17  Score=124.77  Aligned_cols=162  Identities=19%  Similarity=0.215  Sum_probs=110.9

Q ss_pred             HHHHHHHhhcCC---CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           48 KEFELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        48 ~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      ...+.+.+++..   .++.+|||+|||+|.++..+++.+.  .|+++|+|+.+++.|+++....+.  ..++.+...|+.
T Consensus        47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~  122 (230)
T PRK07580         47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGL--AGNITFEVGDLE  122 (230)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccCcEEEEcCch
Confidence            344455555532   4578999999999999999998875  799999999999999998876542  247888888854


Q ss_pred             cCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh--cCCceeecC
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLS  200 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  200 (235)
                      .   ..++||+|++..+++|++++  ..+++.+.+.+++++.+.  .....   ........+...+..  .......++
T Consensus       123 ~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~--~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~  194 (230)
T PRK07580        123 S---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT--FAPYT---PLLALLHWIGGLFPGPSRTTRIYPHR  194 (230)
T ss_pred             h---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE--ECCcc---HHHHHHHHhccccCCccCCCCccccC
Confidence            3   34789999999999988755  477888888765443332  21111   111111111111111  112245678


Q ss_pred             HHHHHHHHHHcCCceeEEEee
Q 026688          201 EREIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       201 ~~~~~~~l~~~Gf~~~~~~~~  221 (235)
                      ..++.++++.+||++..+...
T Consensus       195 ~~~~~~~l~~~Gf~~~~~~~~  215 (230)
T PRK07580        195 EKGIRRALAAAGFKVVRTERI  215 (230)
T ss_pred             HHHHHHHHHHCCCceEeeeec
Confidence            899999999999998887643

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.76  E-value=1.1e-16  Score=123.49  Aligned_cols=132  Identities=20%  Similarity=0.296  Sum_probs=102.0

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++...++.  ..++.+...        +.+||+|+++.
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~--------~~~fD~Vvani  187 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG--------DLKADVIVANI  187 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC--------CCCcCEEEEcC
Confidence            478999999999999998887765 3699999999999999999876542  122222221        12799999875


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      ..+.   ...+++++.++|+|||.++++....                          ...+++...+++.||++.....
T Consensus       188 ~~~~---~~~l~~~~~~~LkpgG~lilsgi~~--------------------------~~~~~v~~~l~~~Gf~~~~~~~  238 (250)
T PRK00517        188 LANP---LLELAPDLARLLKPGGRLILSGILE--------------------------EQADEVLEAYEEAGFTLDEVLE  238 (250)
T ss_pred             cHHH---HHHHHHHHHHhcCCCcEEEEEECcH--------------------------hhHHHHHHHHHHCCCEEEEEEE
Confidence            4322   2467899999999999999976542                          1346788899999999999988


Q ss_pred             eCcEEEEEEecC
Q 026688          221 NRGFVMFTATKP  232 (235)
Q Consensus       221 ~~~~~~~~~~k~  232 (235)
                      .+.+..++++|+
T Consensus       239 ~~~W~~~~~~~~  250 (250)
T PRK00517        239 RGEWVALVGKKK  250 (250)
T ss_pred             eCCEEEEEEEeC
Confidence            888888888764

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.76  E-value=3.1e-18  Score=113.85  Aligned_cols=95  Identities=32%  Similarity=0.520  Sum_probs=78.8

Q ss_pred             EEEecCCCchHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec-c
Q 026688           65 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-A  140 (235)
Q Consensus        65 vLdiG~G~G~~~~~l~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~-~  140 (235)
                      |||+|||+|..+..+.+..   +...++++|+|+.+++.++++....+    .++++.+.|+.+++...++||+|++. .
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            7999999999999999885   44699999999999999999987642    37899999999988777899999995 4


Q ss_pred             cccccCCh--HHHHHHHHHhccCCc
Q 026688          141 AIHCWSSP--STGVAEISRVLRPGG  163 (235)
Q Consensus       141 ~l~~~~~~--~~~l~~~~~~L~pgG  163 (235)
                      +++|+.+.  .++++++.++|+|||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            58987754  589999999999998

>PLN03075 nicotianamine synthase; Provisional

Probab=99.75  E-value=5e-17  Score=125.60  Aligned_cols=146  Identities=12%  Similarity=0.117  Sum_probs=106.9

Q ss_pred             CCCeEEEecCCCchHHHH--HHHcCCCceEEEEeCCHHHHHHHHHHhhh-cCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRI--FAKSGLFSLVVALDYSENMLKQCYEFVQQ-ESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ++++|+|||||.|.++..  +++..+.++++++|+++++++.|++.+.. .++  ..+++|..+|+.+.....+.||+|+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL--~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL--SKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc--cCCcEEEECchhhcccccCCcCEEE
Confidence            679999999998855443  33467888999999999999999999854 333  4579999999987543347899999


Q ss_pred             eccccccc--CChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCce
Q 026688          138 AGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  215 (235)
Q Consensus       138 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  215 (235)
                      +. +++++  .++.++++++.+.|+|||.+++-....-            +..      -....++++++      ||++
T Consensus       201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~------------r~~------LYp~v~~~~~~------gf~~  255 (296)
T PLN03075        201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA------------RAF------LYPVVDPCDLR------GFEV  255 (296)
T ss_pred             Ee-cccccccccHHHHHHHHHHhcCCCcEEEEecccch------------Hhh------cCCCCChhhCC------CeEE
Confidence            99 88888  4778999999999999999998763210            000      01112333332      9988


Q ss_pred             eEEE-eeC--cEEEEEEecCC
Q 026688          216 FKCT-RNR--GFVMFTATKPS  233 (235)
Q Consensus       216 ~~~~-~~~--~~~~~~~~k~~  233 (235)
                      ..+. ..+  ...+++++|+.
T Consensus       256 ~~~~~P~~~v~Nsvi~~r~~~  276 (296)
T PLN03075        256 LSVFHPTDEVINSVIIARKPG  276 (296)
T ss_pred             EEEECCCCCceeeEEEEEeec
Confidence            6664 222  45788888863

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.75  E-value=3.5e-17  Score=122.11  Aligned_cols=108  Identities=19%  Similarity=0.158  Sum_probs=89.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc-ccCC--CCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP--FASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~D~i~  137 (235)
                      +..+|||+|||+|..+..+++..+..+|+++|+|+.+++.+++++...+   ..++.++++|+ ..++  ++.+.||+|+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccceEE
Confidence            4689999999999999999988877899999999999999999887654   35799999999 6555  5567899999


Q ss_pred             ecccccccC--------ChHHHHHHHHHhccCCcEEEEEEec
Q 026688          138 AGAAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       138 ~~~~l~~~~--------~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ++....+..        ....+++++.++|+|||.+++....
T Consensus       117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~  158 (202)
T PRK00121        117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW  158 (202)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence            876543221        1357899999999999999987654

>PRK04266 fibrillarin; Provisional

Probab=99.75  E-value=2.7e-16  Score=118.63  Aligned_cols=148  Identities=12%  Similarity=0.130  Sum_probs=104.2

Q ss_pred             hcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----CCCCC
Q 026688           56 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASS  131 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~  131 (235)
                      .+...++.+|||+|||+|.++..+++..+...|+++|+++.|++.+.+++..     ..++.++.+|....    ++. +
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----~~nv~~i~~D~~~~~~~~~l~-~  140 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----RKNIIPILADARKPERYAHVV-E  140 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----cCCcEEEECCCCCcchhhhcc-c
Confidence            4676778999999999999999999876556899999999999988776554     24688888898642    222 5


Q ss_pred             ceeEEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          132 SIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      .||+|++.     +.++   ..+++++.++|||||.+++..+.........               +.+ . .++..+++
T Consensus       141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~---------------~~~-~-~~~~~~~l  198 (226)
T PRK04266        141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD---------------PKE-I-FKEEIRKL  198 (226)
T ss_pred             cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCC---------------HHH-H-HHHHHHHH
Confidence            69999853     3333   3468999999999999999643211000000               001 1 13445999


Q ss_pred             HHcCCceeEEEeeCc----EEEEEEec
Q 026688          209 RACGLVDFKCTRNRG----FVMFTATK  231 (235)
Q Consensus       209 ~~~Gf~~~~~~~~~~----~~~~~~~k  231 (235)
                      +++||+.++....+.    ...+++++
T Consensus       199 ~~aGF~~i~~~~l~p~~~~h~~~v~~~  225 (226)
T PRK04266        199 EEGGFEILEVVDLEPYHKDHAAVVARK  225 (226)
T ss_pred             HHcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence            999999988876543    45666654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.74  E-value=6.3e-17  Score=136.11  Aligned_cols=149  Identities=18%  Similarity=0.235  Sum_probs=113.6

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--CC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LP  127 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~  127 (235)
                      ...+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.+++....     ..++.+.+.|+..  .+
T Consensus        26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~   98 (475)
T PLN02336         26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLN   98 (475)
T ss_pred             hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccC
Confidence            35666666665678999999999999999998865  899999999999987653221     3478899999863  46


Q ss_pred             CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688          128 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  205 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (235)
                      ++.++||+|++..+++|+++.  ..+++++.++|+|||.+++.+......   ...        ........+.+..+|.
T Consensus        99 ~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~---~~~--------~~~~~~~~~~~~~~~~  167 (475)
T PLN02336         99 ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS---GDS--------KRKNNPTHYREPRFYT  167 (475)
T ss_pred             CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC---Ccc--------cccCCCCeecChHHHH
Confidence            677899999999999999874  589999999999999999987543210   000        0011233445688999


Q ss_pred             HHHHHcCCcee
Q 026688          206 DLCRACGLVDF  216 (235)
Q Consensus       206 ~~l~~~Gf~~~  216 (235)
                      +++.++||...
T Consensus       168 ~~f~~~~~~~~  178 (475)
T PLN02336        168 KVFKECHTRDE  178 (475)
T ss_pred             HHHHHheeccC
Confidence            99999998754

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=1.7e-16  Score=122.24  Aligned_cols=155  Identities=19%  Similarity=0.292  Sum_probs=116.7

Q ss_pred             CCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           43 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        43 ~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      +|...-.++.+-++..  ++++|||+|||+|.+++..++.+. .+++|+|++|..++.++.++..++...  .+.....+
T Consensus       146 HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~--~~~~~~~~  220 (300)
T COG2264         146 HPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVEL--LVQAKGFL  220 (300)
T ss_pred             ChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCch--hhhccccc
Confidence            3444445666666666  489999999999999999999986 479999999999999999998876421  22333333


Q ss_pred             cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHH
Q 026688          123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER  202 (235)
Q Consensus       123 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (235)
                      ....+ ..++||+|+++-.-+-   ...+...+.+.++|||+++++....+                          ..+
T Consensus       221 ~~~~~-~~~~~DvIVANILA~v---l~~La~~~~~~lkpgg~lIlSGIl~~--------------------------q~~  270 (300)
T COG2264         221 LLEVP-ENGPFDVIVANILAEV---LVELAPDIKRLLKPGGRLILSGILED--------------------------QAE  270 (300)
T ss_pred             chhhc-ccCcccEEEehhhHHH---HHHHHHHHHHHcCCCceEEEEeehHh--------------------------HHH
Confidence            33322 2369999998652221   13778899999999999999876532                          246


Q ss_pred             HHHHHHHHcCCceeEEEeeCcEEEEEEecC
Q 026688          203 EIEDLCRACGLVDFKCTRNRGFVMFTATKP  232 (235)
Q Consensus       203 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~k~  232 (235)
                      .+.+.+.++||+++.+.....+..++++|+
T Consensus       271 ~V~~a~~~~gf~v~~~~~~~eW~~i~~kr~  300 (300)
T COG2264         271 SVAEAYEQAGFEVVEVLEREEWVAIVGKRK  300 (300)
T ss_pred             HHHHHHHhCCCeEeEEEecCCEEEEEEEcC
Confidence            778888999999999988888888888874

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.74  E-value=1.6e-16  Score=119.37  Aligned_cols=155  Identities=18%  Similarity=0.139  Sum_probs=108.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC---------CCCCCCe
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENF  116 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---------~~~~~~~  116 (235)
                      +...+......+...++.+|||+|||.|..+..|++++.  +|+|+|+|+.+++.+.+......         .....++
T Consensus        22 p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v   99 (218)
T PRK13255         22 VNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI   99 (218)
T ss_pred             CCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCce
Confidence            444444444434444568999999999999999999987  99999999999998753221100         0013468


Q ss_pred             eEEecccccCCCC-CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcC
Q 026688          117 LLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS  193 (235)
Q Consensus       117 ~~~~~d~~~~~~~-~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (235)
                      ++.++|+.+++.. .+.||.|+...+++|++..  ..+++.+.++|+|||.+++.........               ..
T Consensus       100 ~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~---------------~~  164 (218)
T PRK13255        100 TIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE---------------LA  164 (218)
T ss_pred             EEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc---------------CC
Confidence            8999999887432 2589999999999988744  4889999999999997666554432111               01


Q ss_pred             CceeecCHHHHHHHHHHcCCceeEE
Q 026688          194 GSYTFLSEREIEDLCRACGLVDFKC  218 (235)
Q Consensus       194 ~~~~~~~~~~~~~~l~~~Gf~~~~~  218 (235)
                      +....++.+++.+++.. +|.+...
T Consensus       165 gPp~~~~~~el~~~~~~-~~~i~~~  188 (218)
T PRK13255        165 GPPFSVSDEEVEALYAG-CFEIELL  188 (218)
T ss_pred             CCCCCCCHHHHHHHhcC-CceEEEe
Confidence            22235889999998863 2554443

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.74  E-value=1.9e-16  Score=117.73  Aligned_cols=152  Identities=17%  Similarity=0.246  Sum_probs=107.0

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P  127 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~  127 (235)
                      ++.+.+.+..  +.+|||+|||+|.++..+++.. ...++|+|+++.+++.++++          ++++...|+.+ . +
T Consensus         4 ~~~i~~~i~~--~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~   70 (194)
T TIGR02081         4 LESILNLIPP--GSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEA   70 (194)
T ss_pred             HHHHHHhcCC--CCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccc
Confidence            4556666653  6799999999999999887654 45789999999999988642          46678888865 3 3


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHh--Hh---------hcCCce
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN--MM---------QISGSY  196 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~  196 (235)
                      ++.++||+|+++.+++|++++..+++++.+.++   .+++..++...    ......+...  +.         ....+.
T Consensus        71 ~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (194)
T TIGR02081        71 FPDKSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFPNFGY----WRVRWSILTKGRMPVTGELPYDWYNTPNI  143 (194)
T ss_pred             cCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhH----HHHHHHHHhCCccccCCCCCccccCCCCc
Confidence            556789999999999999999999999887655   44554433211    0000000000  00         011234


Q ss_pred             eecCHHHHHHHHHHcCCceeEEEee
Q 026688          197 TFLSEREIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       197 ~~~~~~~~~~~l~~~Gf~~~~~~~~  221 (235)
                      ++++.+++.++++++||++++....
T Consensus       144 ~~~s~~~~~~ll~~~Gf~v~~~~~~  168 (194)
T TIGR02081       144 HFCTIADFEDLCGELNLRILDRAAF  168 (194)
T ss_pred             ccCcHHHHHHHHHHCCCEEEEEEEe
Confidence            6889999999999999999887643

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.74  E-value=4.5e-17  Score=117.05  Aligned_cols=142  Identities=17%  Similarity=0.154  Sum_probs=100.4

Q ss_pred             EEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688           89 VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus        89 ~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      +|+|+|++|++.|+++..........++++.++|+.++|+++++||+|++..++++++++.+++++++++|||||.+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            48999999999998776432211124689999999999988889999999999999999999999999999999999999


Q ss_pred             EeccCCCcccchhH-----------HHHHHhHhhc----CCceeecCHHHHHHHHHHcCCceeEEEe--eCcEEEEEEe
Q 026688          169 TYIVDGPFNLIPFS-----------RLLRQNMMQI----SGSYTFLSEREIEDLCRACGLVDFKCTR--NRGFVMFTAT  230 (235)
Q Consensus       169 ~~~~~~~~~~~~~~-----------~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~  230 (235)
                      ++............           ..+......+    .....+.+++++.++|+++||+.+....  .+...++++-
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~  159 (160)
T PLN02232         81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAM  159 (160)
T ss_pred             ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEee
Confidence            88764311110000           0000000000    0113567999999999999999876653  3344445443

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.74  E-value=1.5e-16  Score=109.78  Aligned_cols=117  Identities=22%  Similarity=0.175  Sum_probs=93.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~  126 (235)
                      .....+.+.+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.+++++...+   ..++++...|... .
T Consensus         6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~   82 (124)
T TIGR02469         6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEAL   82 (124)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccC
Confidence            34455666666666789999999999999999998777899999999999999999887654   3468888888764 2


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +...++||.|++.....+   ..++++.+.+.|+|||.+++...
T Consensus        83 ~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        83 EDSLPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             hhhcCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence            222368999998765443   35889999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.74  E-value=5.8e-17  Score=116.59  Aligned_cols=136  Identities=14%  Similarity=0.138  Sum_probs=99.9

Q ss_pred             hhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688           55 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  134 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  134 (235)
                      ..++...-.++||+|||.|.++..|+.+..  .++++|+++..++.|++++..     .+++++.+.|+.+.. |.+.||
T Consensus        37 aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~~-P~~~FD  108 (201)
T PF05401_consen   37 AALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAG-----LPHVEWIQADVPEFW-PEGRFD  108 (201)
T ss_dssp             HHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EE
T ss_pred             HhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCCC-CCCCee
Confidence            346666678999999999999999999975  999999999999999999876     458999999997753 578999


Q ss_pred             EEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHc
Q 026688          135 AVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  211 (235)
Q Consensus       135 ~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  211 (235)
                      +|++..+++++.+.   ..+++.+.+.|+|||.|++..+...       ...+        .+  +.+..+.+..+|++.
T Consensus       109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-------~c~~--------wg--h~~ga~tv~~~~~~~  171 (201)
T PF05401_consen  109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-------NCRR--------WG--HAAGAETVLEMLQEH  171 (201)
T ss_dssp             EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-------HHHH--------TT---S--HHHHHHHHHHH
T ss_pred             EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-------cccc--------cC--cccchHHHHHHHHHH
Confidence            99999999999864   4789999999999999999776421       0111        11  224678888898887


Q ss_pred             CCce
Q 026688          212 GLVD  215 (235)
Q Consensus       212 Gf~~  215 (235)
                      =-++
T Consensus       172 ~~~~  175 (201)
T PF05401_consen  172 LTEV  175 (201)
T ss_dssp             SEEE
T ss_pred             hhhe
Confidence            3333

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.74  E-value=9.2e-16  Score=114.34  Aligned_cols=118  Identities=17%  Similarity=0.209  Sum_probs=92.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      +.....+..+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.+++++...+.  ..++.+...|..+.
T Consensus        27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~~~  104 (198)
T PRK00377         27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAPEI  104 (198)
T ss_pred             HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechhhh
Confidence            33334456677778899999999999999998775 4556999999999999999999877653  34788888888763


Q ss_pred             -CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          127 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       +...+.||.|++...   ..++..+++.+.++|+|||.+++...
T Consensus       105 l~~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        105 LFTINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             HhhcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEee
Confidence             222368999998542   34567889999999999999987544

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.73  E-value=2.1e-16  Score=128.32  Aligned_cols=156  Identities=20%  Similarity=0.145  Sum_probs=113.1

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      .+.+.+.+...++.+|||+|||+|.++..+++.. .++|+|+|+|+.+++.|+++...      ..+++...|..+.   
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---  225 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---  225 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence            4456666777778999999999999999998764 45999999999999999988742      2477888887654   


Q ss_pred             CCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCc-ccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSEREIED  206 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (235)
                      .++||.|++..+++|+..  ...+++++.++|+|||.+++......... ...++..++      ..+.....+..++..
T Consensus       226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~y------ifp~g~lps~~~i~~  299 (383)
T PRK11705        226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKY------IFPNGCLPSVRQIAQ  299 (383)
T ss_pred             CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceee------ecCCCcCCCHHHHHH
Confidence            368999999999999864  36899999999999999999877654211 111111110      011123456777777


Q ss_pred             HHHHcCCceeEEEeeC
Q 026688          207 LCRACGLVDFKCTRNR  222 (235)
Q Consensus       207 ~l~~~Gf~~~~~~~~~  222 (235)
                      .++ .||.+..+...+
T Consensus       300 ~~~-~~~~v~d~~~~~  314 (383)
T PRK11705        300 ASE-GLFVMEDWHNFG  314 (383)
T ss_pred             HHH-CCcEEEEEecCh
Confidence            655 588877665443

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.72  E-value=7.2e-16  Score=123.99  Aligned_cols=119  Identities=16%  Similarity=0.133  Sum_probs=94.7

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      .+.+++.+......+|||+|||+|.++..+++++|..+|+++|+|+.+++.+++++..++.....++++...|.... .+
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~  295 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE  295 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence            45667777665567999999999999999999999899999999999999999998765421123678888887542 23


Q ss_pred             CCceeEEEecccccccC---C--hHHHHHHHHHhccCCcEEEEEE
Q 026688          130 SSSIDAVHAGAAIHCWS---S--PSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~---~--~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .++||+|+|+-.+|...   +  ..++++.+.+.|+|||.++++.
T Consensus       296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            46899999987765431   1  2478999999999999999985

>PRK14968 putative methyltransferase; Provisional

Probab=99.72  E-value=1.4e-15  Score=112.62  Aligned_cols=139  Identities=17%  Similarity=0.209  Sum_probs=103.6

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      ..+.+.+...++.+|||+|||+|.++..+++.+  .+++++|+++.+++.+++++...+.. ..++.+...|+.+. +..
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~-~~~   88 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFEP-FRG   88 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEecccccc-ccc
Confidence            444455544567899999999999999999884  59999999999999999988765431 11278888888663 344


Q ss_pred             CceeEEEecccccccC---------------------ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH
Q 026688          131 SSIDAVHAGAAIHCWS---------------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM  189 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~---------------------~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~  189 (235)
                      ..||+|+++..+....                     ....+++++.++|+|||.+++.....                 
T Consensus        89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~-----------------  151 (188)
T PRK14968         89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL-----------------  151 (188)
T ss_pred             cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-----------------
Confidence            5899999876543211                     12467999999999999998865432                 


Q ss_pred             hhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          190 MQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                               ...+++.+++.++||++..+.
T Consensus       152 ---------~~~~~l~~~~~~~g~~~~~~~  172 (188)
T PRK14968        152 ---------TGEDEVLEYLEKLGFEAEVVA  172 (188)
T ss_pred             ---------CCHHHHHHHHHHCCCeeeeee
Confidence                     234678899999999876654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.72  E-value=3.1e-16  Score=116.87  Aligned_cols=101  Identities=13%  Similarity=0.201  Sum_probs=84.4

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|+++.        .++.+..+|+.+ +++.++||+|++..
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~~~~  113 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVLTKG  113 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence            467899999999999999988766679999999999999998763        246678888877 77788999999999


Q ss_pred             cccccCC--hHHHHHHHHHhccCCcEEEEEEecc
Q 026688          141 AIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       141 ~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +++|++.  ..++++++.+++  ++.+++.+...
T Consensus       114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence            9999863  257888999987  46888877654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK06922 hypothetical protein; Provisional

Probab=99.72  E-value=1.2e-16  Score=134.25  Aligned_cols=107  Identities=22%  Similarity=0.365  Sum_probs=91.6

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~  138 (235)
                      ++.+|||+|||+|..+..+++..+..+++|+|+|+.|++.|+++....    ..++.+.++|+.+++  ++.++||+|++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVVs  493 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIVY  493 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEEE
Confidence            478999999999999999998888889999999999999999876543    236788889988766  66789999999


Q ss_pred             cccccccC-------------ChHHHHHHHHHhccCCcEEEEEEec
Q 026688          139 GAAIHCWS-------------SPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       139 ~~~l~~~~-------------~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +.++|++.             +..++++++.++|||||.+++.+..
T Consensus       494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v  539 (677)
T PRK06922        494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI  539 (677)
T ss_pred             chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            99888752             3468999999999999999998753

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.71  E-value=3.1e-15  Score=106.82  Aligned_cols=140  Identities=19%  Similarity=0.208  Sum_probs=113.9

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      .+.....++.+.+.++..++|||||+|..+..++..+|.++++++|.+++.++..+++....+   .+++.++.+++.+.
T Consensus        20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~   96 (187)
T COG2242          20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEA   96 (187)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHh
Confidence            344455678888899999999999999999999988999999999999999999999998876   57899999999774


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  206 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (235)
                      -....++|.|+.... .   +.+.+++.+...|+|||.|++...+.+                          +.....+
T Consensus        97 L~~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~naitlE--------------------------~~~~a~~  146 (187)
T COG2242          97 LPDLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVANAITLE--------------------------TLAKALE  146 (187)
T ss_pred             hcCCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEeecHH--------------------------HHHHHHH
Confidence            212237999998887 3   456889999999999999999876643                          2334567


Q ss_pred             HHHHcCC-ceeEEE
Q 026688          207 LCRACGL-VDFKCT  219 (235)
Q Consensus       207 ~l~~~Gf-~~~~~~  219 (235)
                      .+++.|+ +++++.
T Consensus       147 ~~~~~g~~ei~~v~  160 (187)
T COG2242         147 ALEQLGGREIVQVQ  160 (187)
T ss_pred             HHHHcCCceEEEEE
Confidence            7788888 665554

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.71  E-value=5e-16  Score=116.25  Aligned_cols=116  Identities=18%  Similarity=0.186  Sum_probs=93.9

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .......+.+.+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...+.  ..++++..+|..
T Consensus        57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~--~~~v~~~~~d~~  134 (205)
T PRK13944         57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY--WGVVEVYHGDGK  134 (205)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEECCcc
Confidence            34556777788877778999999999999999888764 246899999999999999998877643  236889999997


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +......+||+|++..++++++      +++.+.|+|||.|++..
T Consensus       135 ~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        135 RGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence            6543457899999998887654      46889999999998854

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.71  E-value=5.6e-16  Score=108.95  Aligned_cols=147  Identities=20%  Similarity=0.337  Sum_probs=115.0

Q ss_pred             HHHHHHHHhhcC----CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           47 EKEFELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        47 ~~~~~~i~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      ++..+++.....    .....+|||+|||.|.++..|++.+-....+|+|+|+.+++.|+......+.  ...|+|.+.|
T Consensus        49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~D  126 (227)
T KOG1271|consen   49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLD  126 (227)
T ss_pred             HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC--CcceeEEEee
Confidence            344555555443    2223499999999999999999987666799999999999999887776653  2349999999


Q ss_pred             cccCCCCCCceeEEEecccccccC---C-h----HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCC
Q 026688          123 ISRLPFASSSIDAVHAGAAIHCWS---S-P----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG  194 (235)
Q Consensus       123 ~~~~~~~~~~~D~i~~~~~l~~~~---~-~----~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (235)
                      +.+..+..++||+|+--.++..+.   + +    ...+..+.++|+|||.++|...+                       
T Consensus       127 I~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN-----------------------  183 (227)
T KOG1271|consen  127 ITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN-----------------------  183 (227)
T ss_pred             ccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC-----------------------
Confidence            988666678999999776665432   1 1    35688899999999999998876                       


Q ss_pred             ceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688          195 SYTFLSEREIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       195 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                          +|.+|+...++..||+.......+
T Consensus       184 ----~T~dELv~~f~~~~f~~~~tvp~p  207 (227)
T KOG1271|consen  184 ----FTKDELVEEFENFNFEYLSTVPTP  207 (227)
T ss_pred             ----ccHHHHHHHHhcCCeEEEEeeccc
Confidence                688999999999999887766544

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.71  E-value=1.6e-15  Score=121.22  Aligned_cols=115  Identities=17%  Similarity=0.223  Sum_probs=93.0

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      .+.+++.+......+|||+|||+|.++..++++.+..+++++|+|+.+++.+++++..++.    ..++...|....  .
T Consensus       185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l----~~~~~~~D~~~~--~  258 (342)
T PRK09489        185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL----EGEVFASNVFSD--I  258 (342)
T ss_pred             HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCEEEEcccccc--c
Confidence            3555666665556789999999999999999998888999999999999999998887643    346677777542  2


Q ss_pred             CCceeEEEecccccccC-----ChHHHHHHHHHhccCCcEEEEEEe
Q 026688          130 SSSIDAVHAGAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~-----~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+.||+|+++..+|+..     ....+++++.+.|+|||.++++..
T Consensus       259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            47899999998887632     236889999999999999998764

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.71  E-value=1.5e-15  Score=117.48  Aligned_cols=144  Identities=21%  Similarity=0.238  Sum_probs=110.4

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      +......+.+.+.+.. .+.+|||+|||+|..+..+++..+...++++|+++.+++.+++++...+.   .++++.++|+
T Consensus        71 ~~~~~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~  146 (251)
T TIGR03534        71 PDTEELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDW  146 (251)
T ss_pred             CChHHHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECch
Confidence            4455666777776653 35699999999999999999988778999999999999999998877653   3689999998


Q ss_pred             ccCCCCCCceeEEEecccccc------cCC--------------------hHHHHHHHHHhccCCcEEEEEEeccCCCcc
Q 026688          124 SRLPFASSSIDAVHAGAAIHC------WSS--------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFN  177 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~------~~~--------------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~  177 (235)
                      .+ +++.++||+|+++-.+..      +..                    ...+++++.++|+|||.+++....      
T Consensus       147 ~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~------  219 (251)
T TIGR03534       147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY------  219 (251)
T ss_pred             hc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc------
Confidence            76 345678999998643221      110                    125788999999999999885421      


Q ss_pred             cchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          178 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                                           ...+++.++++++||+.+.+.
T Consensus       220 ---------------------~~~~~~~~~l~~~gf~~v~~~  240 (251)
T TIGR03534       220 ---------------------DQGEAVRALFEAAGFADVETR  240 (251)
T ss_pred             ---------------------cHHHHHHHHHHhCCCCceEEE
Confidence                                 234678899999999877664

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.70  E-value=4e-16  Score=121.42  Aligned_cols=145  Identities=22%  Similarity=0.360  Sum_probs=108.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      .++.+......  +.+|||+|||+|.+++..++.+. .+|+++|++|..++.|++++..++.  ..++.+  ....+  .
T Consensus       151 cl~~l~~~~~~--g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~--~~~~~v--~~~~~--~  221 (295)
T PF06325_consen  151 CLELLEKYVKP--GKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGV--EDRIEV--SLSED--L  221 (295)
T ss_dssp             HHHHHHHHSST--TSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT---TTCEEE--SCTSC--T
T ss_pred             HHHHHHHhccC--CCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCC--CeeEEE--EEecc--c
Confidence            34455455443  68999999999999999999885 4799999999999999999998875  334443  22222  2


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      ...+||+|+++-...-+   ..+...+.++|+|||+++++....+                          ..+++.+.+
T Consensus       222 ~~~~~dlvvANI~~~vL---~~l~~~~~~~l~~~G~lIlSGIl~~--------------------------~~~~v~~a~  272 (295)
T PF06325_consen  222 VEGKFDLVVANILADVL---LELAPDIASLLKPGGYLILSGILEE--------------------------QEDEVIEAY  272 (295)
T ss_dssp             CCS-EEEEEEES-HHHH---HHHHHHCHHHEEEEEEEEEEEEEGG--------------------------GHHHHHHHH
T ss_pred             ccccCCEEEECCCHHHH---HHHHHHHHHhhCCCCEEEEccccHH--------------------------HHHHHHHHH
Confidence            34899999987554422   3567789999999999999877542                          346777888


Q ss_pred             HHcCCceeEEEeeCcEEEEEEecC
Q 026688          209 RACGLVDFKCTRNRGFVMFTATKP  232 (235)
Q Consensus       209 ~~~Gf~~~~~~~~~~~~~~~~~k~  232 (235)
                      ++ ||++++....+.+..++++|+
T Consensus       273 ~~-g~~~~~~~~~~~W~~l~~~Kk  295 (295)
T PF06325_consen  273 KQ-GFELVEEREEGEWVALVFKKK  295 (295)
T ss_dssp             HT-TEEEEEEEEETTEEEEEEEE-
T ss_pred             HC-CCEEEEEEEECCEEEEEEEeC
Confidence            76 999999999999999888874

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.70  E-value=2.2e-16  Score=122.33  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=85.4

Q ss_pred             CCCeEEEecCCCch----HHHHHHHcCC-----CceEEEEeCCHHHHHHHHHHhhh----cCCC----------------
Q 026688           61 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQ----ESNF----------------  111 (235)
Q Consensus        61 ~~~~vLdiG~G~G~----~~~~l~~~~~-----~~~v~~~D~s~~~~~~a~~~~~~----~~~~----------------  111 (235)
                      ++.+|+|+|||+|.    +++.+++..+     ..+|+|+|+|+.+++.|++..-.    .+..                
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    4555555433     46899999999999999975310    0000                


Q ss_pred             ----CCCCeeEEecccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEE
Q 026688          112 ----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       112 ----~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~  169 (235)
                          ...+++|.+.|+.+.+++.++||+|+|..+++|++++  .++++++.++|+|||+|++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                0136899999999877667899999999999999755  479999999999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.70  E-value=5.6e-17  Score=119.08  Aligned_cols=153  Identities=16%  Similarity=0.194  Sum_probs=112.2

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc----CCCCCCceeE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSSIDA  135 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~  135 (235)
                      ..+|||+|||.|.....+.+-.++  ..++++|.||.+++..+++..-.    ..++...+.|+..    .+...+++|+
T Consensus        72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~  147 (264)
T KOG2361|consen   72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDI  147 (264)
T ss_pred             hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccce
Confidence            348999999999999999998776  78999999999999998876543    2456667777754    2456789999


Q ss_pred             EEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhH-HHHHH--hH-hhcCCceeecCHHHHHHHHH
Q 026688          136 VHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS-RLLRQ--NM-MQISGSYTFLSEREIEDLCR  209 (235)
Q Consensus       136 i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~-~~~~~--~~-~~~~~~~~~~~~~~~~~~l~  209 (235)
                      |++.++|..+...  ..+++++.++|||||.|++-+...-... ...+. .+...  .+ .+......+|+.+++..++.
T Consensus       148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla-qlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~  226 (264)
T KOG2361|consen  148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA-QLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFT  226 (264)
T ss_pred             EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHH-HHhccCCceeecceEEccCCceeeeccHHHHHHHHH
Confidence            9999999876533  5889999999999999999887653210 00000 00000  00 11223357899999999999


Q ss_pred             HcCCceeEEE
Q 026688          210 ACGLVDFKCT  219 (235)
Q Consensus       210 ~~Gf~~~~~~  219 (235)
                      ++||..++..
T Consensus       227 ~agf~~~~~~  236 (264)
T KOG2361|consen  227 KAGFEEVQLE  236 (264)
T ss_pred             hcccchhccc
Confidence            9999876654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.70  E-value=4.2e-16  Score=115.70  Aligned_cols=108  Identities=18%  Similarity=0.164  Sum_probs=88.9

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---CCCCceeEEEe
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHA  138 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~i~~  138 (235)
                      ..+|||+|||+|.++..+++..|+..++|+|+++.+++.|++++...+   ..++.++++|+.+.+   ++.+.+|.|++
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~---l~ni~~i~~d~~~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG---LKNLHVLCGDANELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC---CCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence            569999999999999999999998999999999999999999887765   348999999997643   34568999998


Q ss_pred             cccccccCCh--------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          139 GAAIHCWSSP--------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       139 ~~~l~~~~~~--------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +....+....        ..+++++.++|+|||.+++.+...
T Consensus        94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~  135 (194)
T TIGR00091        94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE  135 (194)
T ss_pred             ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            7654433221        468999999999999999877543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.69  E-value=4.1e-16  Score=113.31  Aligned_cols=118  Identities=24%  Similarity=0.340  Sum_probs=93.9

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      .+.+.+.+...+..+|||+|||+|.++..+++..+..+|+++|+++.+++.+++++..++.   .++++...|..+.. +
T Consensus        20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~~-~   95 (170)
T PF05175_consen   20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEAL-P   95 (170)
T ss_dssp             HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTTC-C
T ss_pred             HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc---cccccccccccccc-c
Confidence            3455555554467899999999999999999999987899999999999999999988764   23899999987633 3


Q ss_pred             CCceeEEEecccccccCC-----hHHHHHHHHHhccCCcEEEEEEec
Q 026688          130 SSSIDAVHAGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .++||+|+++-.++.-.+     ..++++.+.+.|+|||.+++....
T Consensus        96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen   96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence            689999999977655443     258899999999999999876553

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.69  E-value=3.8e-15  Score=116.99  Aligned_cols=158  Identities=18%  Similarity=0.157  Sum_probs=111.9

Q ss_pred             CCCHHHHHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           44 PGPEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      |..+.+.+.+++.+. ..+..+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...+.  ..++++..+|
T Consensus        96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~--~~~v~~~~~d  173 (284)
T TIGR00536        96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL--EHRVEFIQSN  173 (284)
T ss_pred             CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECc
Confidence            455667777665543 2223799999999999999999988878999999999999999999877653  3358999999


Q ss_pred             cccCCCCCCceeEEEecc-------------cccccC------------ChHHHHHHHHHhccCCcEEEEEEeccCCCcc
Q 026688          123 ISRLPFASSSIDAVHAGA-------------AIHCWS------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFN  177 (235)
Q Consensus       123 ~~~~~~~~~~~D~i~~~~-------------~l~~~~------------~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~  177 (235)
                      +.+ +++..+||+|+++-             +..|.+            ....++..+.+.|+|||.+++.....     
T Consensus       174 ~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----  247 (284)
T TIGR00536       174 LFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-----  247 (284)
T ss_pred             hhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----
Confidence            876 33445899999962             122222            12467889999999999998866432     


Q ss_pred             cchhHHHHHHhHhhcCCceeecCHHHHHHHHH-HcCCceeEEE--eeCcEEEEEEec
Q 026688          178 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCR-ACGLVDFKCT--RNRGFVMFTATK  231 (235)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gf~~~~~~--~~~~~~~~~~~k  231 (235)
                                            ....+.+++. +.||..+.+.  ..+..-++++++
T Consensus       248 ----------------------q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~  282 (284)
T TIGR00536       248 ----------------------QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY  282 (284)
T ss_pred             ----------------------HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence                                  2345667777 4688765554  233334444443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.69  E-value=6.3e-15  Score=115.39  Aligned_cols=146  Identities=18%  Similarity=0.130  Sum_probs=106.0

Q ss_pred             CHHHHHHHHh-hcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKG-YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .+..++..+. ++...++.+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++...+.  ..++++.++|+.
T Consensus       105 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~--~~~i~~~~~D~~  182 (284)
T TIGR03533       105 IAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL--EDRVTLIQSDLF  182 (284)
T ss_pred             hHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchh
Confidence            3444554443 3433345799999999999999999988888999999999999999999887654  347899999986


Q ss_pred             cCCCCCCceeEEEecccc-------------cccCC------------hHHHHHHHHHhccCCcEEEEEEeccCCCcccc
Q 026688          125 RLPFASSSIDAVHAGAAI-------------HCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI  179 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l-------------~~~~~------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~  179 (235)
                      +. ++.++||+|+++--.             .|.+.            ...+++.+.+.|+|||.+++....        
T Consensus       183 ~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--------  253 (284)
T TIGR03533       183 AA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--------  253 (284)
T ss_pred             hc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--------
Confidence            42 344689999996211             11110            146788999999999999876532        


Q ss_pred             hhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688          180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                                          +.+.+.+++.++||........+
T Consensus       254 --------------------~~~~v~~~~~~~~~~~~~~~~~~  276 (284)
T TIGR03533       254 --------------------SMEALEEAYPDVPFTWLEFENGG  276 (284)
T ss_pred             --------------------CHHHHHHHHHhCCCceeeecCCC
Confidence                                23467788888898765554433

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.69  E-value=2.5e-15  Score=112.90  Aligned_cols=143  Identities=17%  Similarity=0.219  Sum_probs=114.3

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      ...-.+..+.......+|||+|||.|..+..++++.+.++++++|+++.+.+.|++.+..+++  ..++++++.|+.+..
T Consensus        31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l--~~ri~v~~~Di~~~~  108 (248)
T COG4123          31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL--EERIQVIEADIKEFL  108 (248)
T ss_pred             cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc--hhceeEehhhHHHhh
Confidence            334456667776668999999999999999999997779999999999999999999988776  679999999998863


Q ss_pred             --CCCCceeEEEecccccccC------------------ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH
Q 026688          128 --FASSSIDAVHAGAAIHCWS------------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ  187 (235)
Q Consensus       128 --~~~~~~D~i~~~~~l~~~~------------------~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~  187 (235)
                        ....+||+|+|+--++-..                  +.+.+++.+.++|||||.+.++-..                
T Consensus       109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~----------------  172 (248)
T COG4123         109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP----------------  172 (248)
T ss_pred             hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH----------------
Confidence              3345799999985443221                  1257899999999999999987643                


Q ss_pred             hHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          188 NMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                                 -...++..++.+.+|...++.
T Consensus       173 -----------erl~ei~~~l~~~~~~~k~i~  193 (248)
T COG4123         173 -----------ERLAEIIELLKSYNLEPKRIQ  193 (248)
T ss_pred             -----------HHHHHHHHHHHhcCCCceEEE
Confidence                       234678888999888765554

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.69  E-value=5e-15  Score=119.37  Aligned_cols=156  Identities=13%  Similarity=0.035  Sum_probs=111.9

Q ss_pred             CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      ..+.+.+.+.+.+.  ++.+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++...+    .++++.++|+.
T Consensus       237 eTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~  310 (423)
T PRK14966        237 ETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWF  310 (423)
T ss_pred             cHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchh
Confidence            34455566655544  3569999999999999999988777899999999999999999987653    37899999986


Q ss_pred             cCCC-CCCceeEEEecccccc-----c----------------CC----hHHHHHHHHHhccCCcEEEEEEeccCCCccc
Q 026688          125 RLPF-ASSSIDAVHAGAAIHC-----W----------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNL  178 (235)
Q Consensus       125 ~~~~-~~~~~D~i~~~~~l~~-----~----------------~~----~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~  178 (235)
                      +... ..++||+|+++-....     .                .+    ...+++.+.+.|+|||.+++....       
T Consensus       311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-------  383 (423)
T PRK14966        311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-------  383 (423)
T ss_pred             ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-------
Confidence            5432 2357999999643210     0                01    125677778899999998765432       


Q ss_pred             chhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE--eeCcEEEEEEecCC
Q 026688          179 IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKPS  233 (235)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~~~~~~~k~~  233 (235)
                                          -..+.+.+++++.||..+.+.  ..+..-+++++++.
T Consensus       384 --------------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~~  420 (423)
T PRK14966        384 --------------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMK  420 (423)
T ss_pred             --------------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEhh
Confidence                                235678899999999876654  34444555566554

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.68  E-value=1.6e-15  Score=113.96  Aligned_cols=115  Identities=16%  Similarity=0.138  Sum_probs=94.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .......+.+.+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...+   ..++++.++|..
T Consensus        61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~  137 (212)
T PRK13942         61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGT  137 (212)
T ss_pred             cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcc
Confidence            45667788888888889999999999999999888763 44699999999999999999988765   347999999987


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ....+...||+|++.....++      ...+.+.|+|||.+++..
T Consensus       138 ~~~~~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        138 LGYEENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             cCCCcCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence            654456789999988766543      346778899999998854

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.68  E-value=5.3e-15  Score=107.86  Aligned_cols=173  Identities=17%  Similarity=0.171  Sum_probs=131.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ...++.+.+.+... ..+|||||||||..+.++++..|.....-.|+++..+...+..+...+....  ..-...|+...
T Consensus        12 ~pIl~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv--~~P~~lDv~~~   88 (204)
T PF06080_consen   12 DPILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNV--RPPLALDVSAP   88 (204)
T ss_pred             hHHHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCccc--CCCeEeecCCC
Confidence            34455566666542 2269999999999999999999988999999999887777777665543111  12244566553


Q ss_pred             C--C------CCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCce
Q 026688          127 P--F------ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY  196 (235)
Q Consensus       127 ~--~------~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (235)
                      +  .      ..+.||+|+|..++|-.+-.  +.+++.+.++|+|||.|++-.+.........+....+...+.......
T Consensus        89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~  168 (204)
T PF06080_consen   89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEW  168 (204)
T ss_pred             CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCc
Confidence            2  2      24589999999999976533  688999999999999999988877665556666777777766666667


Q ss_pred             eecCHHHHHHHHHHcCCceeEEEeeC
Q 026688          197 TFLSEREIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       197 ~~~~~~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                      -..+.+++.++.+++|++..+....+
T Consensus       169 GiRD~e~v~~lA~~~GL~l~~~~~MP  194 (204)
T PF06080_consen  169 GIRDIEDVEALAAAHGLELEEDIDMP  194 (204)
T ss_pred             CccCHHHHHHHHHHCCCccCcccccC
Confidence            78899999999999999988887666

The function of this family is unknown.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.68  E-value=1.8e-15  Score=116.31  Aligned_cols=145  Identities=19%  Similarity=0.200  Sum_probs=107.8

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      .+..........+|+|||+|+|.++..+++++|..+++..|. |.+++.+++         ..++++..+|+. .++|. 
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~-  158 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV-  158 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS-
T ss_pred             hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc-
Confidence            444455555668999999999999999999999999999998 889988888         348999999998 56664 


Q ss_pred             ceeEEEecccccccCChH--HHHHHHHHhccCC--cEEEEEEeccCCCcccchhH--HHHHHhHhhcCCceeecCHHHHH
Q 026688          132 SIDAVHAGAAIHCWSSPS--TGVAEISRVLRPG--GVFVGTTYIVDGPFNLIPFS--RLLRQNMMQISGSYTFLSEREIE  205 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pg--G~li~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  205 (235)
                       +|++++.+++|++++.+  ++|+++++.|+||  |.|+|.+...+.........  ..+.............+|.++|+
T Consensus       159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~  237 (241)
T PF00891_consen  159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWE  237 (241)
T ss_dssp             -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHH
T ss_pred             -ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHH
Confidence             99999999999998774  8999999999999  99999999876543333222  12222221111125668899999


Q ss_pred             HHHH
Q 026688          206 DLCR  209 (235)
Q Consensus       206 ~~l~  209 (235)
                      ++|.
T Consensus       238 ~ll~  241 (241)
T PF00891_consen  238 ALLK  241 (241)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.68  E-value=3.5e-15  Score=113.26  Aligned_cols=165  Identities=18%  Similarity=0.166  Sum_probs=107.3

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ...++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++...+    .++.+...|+... ++.++||+|+
T Consensus        33 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~Vi  106 (223)
T PRK14967         33 GLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVVV  106 (223)
T ss_pred             ccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEEE
Confidence            34557899999999999999988864 3589999999999999999887653    2577888888653 3457899999


Q ss_pred             ecccccccCC---------------------hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh---hcC
Q 026688          138 AGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---QIS  193 (235)
Q Consensus       138 ~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~---~~~  193 (235)
                      ++-.+.....                     .+.+++++.++|+|||.+++.......   ...+...+...-.   ...
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~---~~~~~~~l~~~g~~~~~~~  183 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG---VERTLTRLSEAGLDAEVVA  183 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC---HHHHHHHHHHCCCCeEEEE
Confidence            9743321111                     245788899999999999986554321   1122222221100   000


Q ss_pred             CceeecCHHH--HHHHHHHcCCceeEEEeeCcEEEEEEecC
Q 026688          194 GSYTFLSERE--IEDLCRACGLVDFKCTRNRGFVMFTATKP  232 (235)
Q Consensus       194 ~~~~~~~~~~--~~~~l~~~Gf~~~~~~~~~~~~~~~~~k~  232 (235)
                      .....+.+..  -..++++.||-.. -.......+++++||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  223 (223)
T PRK14967        184 SQWIPFGPVLRARAAWLERRGLLPP-GQREEELVVIRADKP  223 (223)
T ss_pred             eeccCccHHHHHHHHHHHHcCCCCC-CCceEEEEEEEeecC
Confidence            1111222222  3367889999854 233345677888886

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.67  E-value=1.7e-14  Score=113.11  Aligned_cols=145  Identities=18%  Similarity=0.150  Sum_probs=108.2

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      +..+.+.+.+.......++.+|||+|||+|..+..++...+..+++++|+++.+++.+++++. ...  ..++.+...|+
T Consensus        91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~--~~~i~~~~~d~  167 (275)
T PRK09328         91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL--GARVEFLQGDW  167 (275)
T ss_pred             CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC--CCcEEEEEccc
Confidence            445666777766555566789999999999999999998877899999999999999999887 211  35789999998


Q ss_pred             ccCCCCCCceeEEEeccccc--------------cc------------CChHHHHHHHHHhccCCcEEEEEEeccCCCcc
Q 026688          124 SRLPFASSSIDAVHAGAAIH--------------CW------------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN  177 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~--------------~~------------~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~  177 (235)
                      .+. ++.++||+|+++-...              +-            .....+++++.++|+|||.+++....      
T Consensus       168 ~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~------  240 (275)
T PRK09328        168 FEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY------  240 (275)
T ss_pred             cCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc------
Confidence            653 2357899999863221              00            01146788888999999999984421      


Q ss_pred             cchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          178 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                                           ...+++.+++.+.||..+...
T Consensus       241 ---------------------~~~~~~~~~l~~~gf~~v~~~  261 (275)
T PRK09328        241 ---------------------DQGEAVRALLAAAGFADVETR  261 (275)
T ss_pred             ---------------------hHHHHHHHHHHhCCCceeEEe
Confidence                                 123568889999999866664

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.66  E-value=1.1e-15  Score=119.40  Aligned_cols=98  Identities=27%  Similarity=0.373  Sum_probs=81.5

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ...+|||+|||+|.++..+++..+.   ..++|+|+|+.+++.|+++        .+++.+.++|+.++|+++++||+|+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~--------~~~~~~~~~d~~~lp~~~~sfD~I~  156 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR--------YPQVTFCVASSHRLPFADQSLDAII  156 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh--------CCCCeEEEeecccCCCcCCceeEEE
Confidence            4578999999999999999887542   3799999999999999875        3467899999999888888999999


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +...-       ..++++.++|+|||.+++..+...
T Consensus       157 ~~~~~-------~~~~e~~rvLkpgG~li~~~p~~~  185 (272)
T PRK11088        157 RIYAP-------CKAEELARVVKPGGIVITVTPGPR  185 (272)
T ss_pred             EecCC-------CCHHHHHhhccCCCEEEEEeCCCc
Confidence            86531       236889999999999999887653

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.66  E-value=1.6e-14  Score=114.20  Aligned_cols=148  Identities=16%  Similarity=0.081  Sum_probs=104.8

Q ss_pred             CHHHHHHHHh-hcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKG-YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      ....+...+. ++...+..+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++...+.  ..++++.++|+.
T Consensus       117 te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l--~~~i~~~~~D~~  194 (307)
T PRK11805        117 IAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL--EDRVTLIESDLF  194 (307)
T ss_pred             hHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CCcEEEEECchh
Confidence            3444444443 3333223789999999999999999988888999999999999999999887654  346999999986


Q ss_pred             cCCCCCCceeEEEecccc-------------cccCC------------hHHHHHHHHHhccCCcEEEEEEeccCCCcccc
Q 026688          125 RLPFASSSIDAVHAGAAI-------------HCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI  179 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l-------------~~~~~------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~  179 (235)
                      +. ++.++||+|+++--.             .|.+.            ...+++.+.+.|+|||.+++....        
T Consensus       195 ~~-l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~--------  265 (307)
T PRK11805        195 AA-LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN--------  265 (307)
T ss_pred             hh-CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc--------
Confidence            52 234689999987211             11111            136789999999999999985432        


Q ss_pred             hhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcE
Q 026688          180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGF  224 (235)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  224 (235)
                                          +..++.+++.+.||........+..
T Consensus       266 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~  290 (307)
T PRK11805        266 --------------------SRVHLEEAYPDVPFTWLEFENGGDG  290 (307)
T ss_pred             --------------------CHHHHHHHHhhCCCEEEEecCCCce
Confidence                                2234667777778776555544433

>PTZ00146 fibrillarin; Provisional

Probab=99.66  E-value=2.9e-14  Score=109.95  Aligned_cols=162  Identities=12%  Similarity=0.073  Sum_probs=104.8

Q ss_pred             CHHHHHHHHh---hcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           46 PEKEFELMKG---YLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        46 ~~~~~~~i~~---~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      ...+...|+.   .+...++.+|||+|||+|.++.++++.. +...|+++|+++.+++...+....     ..++.++..
T Consensus       114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~  188 (293)
T PTZ00146        114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIE  188 (293)
T ss_pred             ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEEC
Confidence            4455555643   3445678899999999999999999874 456899999998766555444332     246888888


Q ss_pred             ccccC---CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceee
Q 026688          122 DISRL---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF  198 (235)
Q Consensus       122 d~~~~---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (235)
                      |+...   ......+|+|++...  ..++...++.++.++|||||.+++....... +...              .....
T Consensus       189 Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~i-d~g~--------------~pe~~  251 (293)
T PTZ00146        189 DARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCI-DSTA--------------KPEVV  251 (293)
T ss_pred             CccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEecccc-ccCC--------------CHHHH
Confidence            98542   122357999998764  2233346677899999999999995332211 0000              01111


Q ss_pred             cCHHHHHHHHHHcCCceeEEEeeC----cEEEEEEec
Q 026688          199 LSEREIEDLCRACGLVDFKCTRNR----GFVMFTATK  231 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~k  231 (235)
                      ++ +++ ++|+++||+.++.....    ...++++..
T Consensus       252 f~-~ev-~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~  286 (293)
T PTZ00146        252 FA-SEV-QKLKKEGLKPKEQLTLEPFERDHAVVIGVY  286 (293)
T ss_pred             HH-HHH-HHHHHcCCceEEEEecCCccCCcEEEEEEE
Confidence            22 344 78899999987776443    234455443

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.66  E-value=6e-15  Score=115.96  Aligned_cols=127  Identities=17%  Similarity=0.238  Sum_probs=95.1

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++.+|||+|||+|.++..+++.+. .+|+++|+++.+++.|+++...++.  ..++.+...+...  ...++||+|+++.
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n~~--~~~~~~~~~~~~~--~~~~~fDlVvan~  233 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELNQV--SDRLQVKLIYLEQ--PIEGKADVIVANI  233 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CcceEEEeccccc--ccCCCceEEEEec
Confidence            478999999999999998887753 5899999999999999999887654  2345666555332  2357899999976


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      ....   ...++.++.++|+|||.++++....                          ...+++.+.+++. |+++.+..
T Consensus       234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi~~--------------------------~~~~~v~~~~~~~-f~~~~~~~  283 (288)
T TIGR00406       234 LAEV---IKELYPQFSRLVKPGGWLILSGILE--------------------------TQAQSVCDAYEQG-FTVVEIRQ  283 (288)
T ss_pred             CHHH---HHHHHHHHHHHcCCCcEEEEEeCcH--------------------------hHHHHHHHHHHcc-CceeeEec
Confidence            5432   3478899999999999999977543                          1235667777766 87776654


Q ss_pred             eC
Q 026688          221 NR  222 (235)
Q Consensus       221 ~~  222 (235)
                      .+
T Consensus       284 ~~  285 (288)
T TIGR00406       284 RE  285 (288)
T ss_pred             cC
Confidence            43

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.66  E-value=3.2e-16  Score=114.17  Aligned_cols=165  Identities=20%  Similarity=0.161  Sum_probs=118.3

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-  126 (235)
                      ..+..++......+-+++||+|||||-....+...-.  .++|+|+|++|++.|.++-.        --...++|+... 
T Consensus       112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~--------YD~L~~Aea~~Fl  181 (287)
T COG4976         112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGL--------YDTLYVAEAVLFL  181 (287)
T ss_pred             HHHHHHHHhccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccc--------hHHHHHHHHHHHh
Confidence            3344444555555578999999999999999988765  89999999999999987521        112333444321 


Q ss_pred             C-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688          127 P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  205 (235)
Q Consensus       127 ~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (235)
                      + ...+.||+|+...++.++.+.+.++-.....|+|||.+.++.-.......   |.-        .++.....+..-++
T Consensus       182 ~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f~l--------~ps~RyAH~~~YVr  250 (287)
T COG4976         182 EDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG---FVL--------GPSQRYAHSESYVR  250 (287)
T ss_pred             hhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC---eec--------chhhhhccchHHHH
Confidence            1 34578999999999999999999999999999999999998877654321   100        11112234667788


Q ss_pred             HHHHHcCCceeEEEeeCc---------EEEEEEecCC
Q 026688          206 DLCRACGLVDFKCTRNRG---------FVMFTATKPS  233 (235)
Q Consensus       206 ~~l~~~Gf~~~~~~~~~~---------~~~~~~~k~~  233 (235)
                      .+++..||+++.+...+.         -..++++|++
T Consensus       251 ~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~~  287 (287)
T COG4976         251 ALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKKA  287 (287)
T ss_pred             HHHHhcCceEEEeecccchhhcCCCCCCceEEEecCC
Confidence            999999999988874332         2567777763

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.66  E-value=4e-15  Score=112.31  Aligned_cols=114  Identities=17%  Similarity=0.176  Sum_probs=92.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ......+.+.+...++.+|||+|||+|..+..+++... ..+|+++|+++.+++.|++++...+   ..++++.++|...
T Consensus        63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~  139 (215)
T TIGR00080        63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQ  139 (215)
T ss_pred             HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCccc
Confidence            44567788888888889999999999999999988754 4579999999999999999988765   3478999999976


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .......||+|++.....++      ...+.+.|+|||++++..
T Consensus       140 ~~~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       140 GWEPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CCcccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence            54334689999987665543      356788999999999864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03438 probable methyltransferase

Probab=99.66  E-value=4.4e-15  Score=117.43  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=82.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCCCCC----cee
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASS----SID  134 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~----~~D  134 (235)
                      ++.+|||+|||+|..+..+++..+ ..+|+++|+|++|++.+++++....  +..++.++++|+.+ .+++..    ...
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~~~~~~~~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPLALPPEPAAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchhhhhcccccCCeE
Confidence            367999999999999999998864 4689999999999999999876532  13457778999976 333322    233


Q ss_pred             EEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEe
Q 026688          135 AVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       135 ~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ++++..++++++..  ..+++++.+.|+|||.+++...
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            44455677777643  4789999999999999997553

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.66  E-value=7.3e-15  Score=117.72  Aligned_cols=140  Identities=22%  Similarity=0.257  Sum_probs=108.9

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ...+...+.......++.+|||+|||+|.++..++..+.  .++|+|+++.+++.++.++...+.   .++.+.+.|+.+
T Consensus       167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~  241 (329)
T TIGR01177       167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATK  241 (329)
T ss_pred             CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhc
Confidence            345666677766767788999999999999988777654  999999999999999999887663   347899999998


Q ss_pred             CCCCCCceeEEEecccccc--------cCC-hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCce
Q 026688          126 LPFASSSIDAVHAGAAIHC--------WSS-PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY  196 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~--------~~~-~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (235)
                      ++.+.++||+|+++..+..        ..+ ..++++++.++|+|||++++..+..                        
T Consensus       242 l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~------------------------  297 (329)
T TIGR01177       242 LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR------------------------  297 (329)
T ss_pred             CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC------------------------
Confidence            8877789999999743211        101 2578999999999999999876543                        


Q ss_pred             eecCHHHHHHHHHHcCCceeEEEe
Q 026688          197 TFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       197 ~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                           .++...++++|| ++....
T Consensus       298 -----~~~~~~~~~~g~-i~~~~~  315 (329)
T TIGR01177       298 -----IDLESLAEDAFR-VVKRFE  315 (329)
T ss_pred             -----CCHHHHHhhcCc-chheee
Confidence                 245577889999 766553

This family is found exclusively in the Archaea.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.65  E-value=2.9e-14  Score=108.19  Aligned_cols=168  Identities=14%  Similarity=0.106  Sum_probs=129.8

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C--CCCce
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F--ASSSI  133 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~--~~~~~  133 (235)
                      ...+.+||||.||.|.+........+.  .++...|+|+..++..++.++..++  ..-++|.++|+.+.. +  -...+
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--~~i~~f~~~dAfd~~~l~~l~p~P  210 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--EDIARFEQGDAFDRDSLAALDPAP  210 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--ccceEEEecCCCCHhHhhccCCCC
Confidence            345789999999999999998888775  6899999999999999999999885  334599999997632 1  23567


Q ss_pred             eEEEecccccccCChH---HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHH-HHHhHhhcCCceeecCHHHHHHHHH
Q 026688          134 DAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-LRQNMMQISGSYTFLSEREIEDLCR  209 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~---~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~  209 (235)
                      ++++.+..++.++|.+   ..+..+.+++.|||+++.+...   +++...+..+ +..+.......++..|..|+.++++
T Consensus       211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP---wHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~  287 (311)
T PF12147_consen  211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQP---WHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVE  287 (311)
T ss_pred             CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC---CCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHH
Confidence            9999999999999864   6788999999999999976532   2233333222 2222222345688899999999999


Q ss_pred             HcCCceeEE--EeeCcEEEEEEec
Q 026688          210 ACGLVDFKC--TRNRGFVMFTATK  231 (235)
Q Consensus       210 ~~Gf~~~~~--~~~~~~~~~~~~k  231 (235)
                      .+||+.+..  ...+-|++.+|+|
T Consensus       288 ~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  288 AAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             HcCCchhhheeccCCceEEEeecC
Confidence            999976444  5777888888875

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.64  E-value=4.9e-15  Score=108.52  Aligned_cols=148  Identities=16%  Similarity=0.202  Sum_probs=105.3

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ...+.||.|+|-|+.+..++-.. ..+|..+|+.+..++.|++.+....   ..-.++++..+.+..++..+||+|++.+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEehH
Confidence            35899999999999999775543 3499999999999999998876521   2346788888888755557999999999


Q ss_pred             cccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEE
Q 026688          141 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  218 (235)
Q Consensus       141 ~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  218 (235)
                      ++.|++|.+  .+|++|+..|+|+|.|++-+.........           .......-..+.+.++++++++|+++++.
T Consensus       131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~-----------~D~~DsSvTRs~~~~~~lF~~AGl~~v~~  199 (218)
T PF05891_consen  131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDE-----------FDEEDSSVTRSDEHFRELFKQAGLRLVKE  199 (218)
T ss_dssp             -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEE-----------EETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred             hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcc-----------cCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence            999999875  89999999999999999988765432100           01112344567899999999999999988


Q ss_pred             EeeCc
Q 026688          219 TRNRG  223 (235)
Q Consensus       219 ~~~~~  223 (235)
                      ..+..
T Consensus       200 ~~Q~~  204 (218)
T PF05891_consen  200 EKQKG  204 (218)
T ss_dssp             EE-TT
T ss_pred             ccccC
Confidence            76554

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.64  E-value=1e-14  Score=109.22  Aligned_cols=99  Identities=20%  Similarity=0.219  Sum_probs=78.0

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------CCC
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS  130 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~  130 (235)
                      .++.+|||+|||+|.++..+++.. +...|+++|+++ +        .  .   ..++.++++|+...+        +..
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~--~---~~~v~~i~~D~~~~~~~~~i~~~~~~  115 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------D--P---IVGVDFLQGDFRDELVLKALLERVGD  115 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------c--C---CCCcEEEecCCCChHHHHHHHHHhCC
Confidence            457899999999999999998874 456999999988 1        0  1   346889999998742        456


Q ss_pred             CceeEEEecccccccCCh-----------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          131 SSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ++||+|++..+.++..++           ..+++.+.++|+|||.+++..+..
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence            789999998766554332           357899999999999999977654

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.64  E-value=7.3e-15  Score=117.75  Aligned_cols=118  Identities=19%  Similarity=0.239  Sum_probs=95.3

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--CCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFA  129 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~  129 (235)
                      .+.+.+.......+||||||+|.++..+++..|+..++|+|+++.+++.+.+++...+   ..++.++.+|+..+  .++
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~~  189 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELLP  189 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhCC
Confidence            4455555555679999999999999999999999999999999999999999988765   35799999998653  466


Q ss_pred             CCceeEEEecccccccCCh------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          130 SSSIDAVHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ++++|.|+++....+....      ..+++++.++|+|||.+.+.+-..
T Consensus       190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~  238 (390)
T PRK14121        190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE  238 (390)
T ss_pred             CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence            7899999976544332222      478999999999999999977554

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=6e-14  Score=107.67  Aligned_cols=116  Identities=20%  Similarity=0.314  Sum_probs=95.7

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      .+.+++.+......+|||+|||.|.++..+++..|..+++-+|++...++.+++++..++.   .+..+...|..+.. .
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~~v~~s~~~~~v-~  222 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV---ENTEVWASNLYEPV-E  222 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC---CccEEEEecccccc-c
Confidence            4567777777767799999999999999999999999999999999999999999998753   33356666665532 2


Q ss_pred             CCceeEEEecccccccCCh-----HHHHHHHHHhccCCcEEEEEEe
Q 026688          130 SSSIDAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       ++||+|+|+--+|.-.+.     ++++....+.|++||.|.++..
T Consensus       223 -~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         223 -GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             -ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence             499999999888754332     3889999999999999998875

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.63  E-value=2.1e-15  Score=109.27  Aligned_cols=175  Identities=22%  Similarity=0.292  Sum_probs=113.0

Q ss_pred             cccccccChhhhhh-cccccccccccceecccccCCCCCCHHHHHHHHhhcCCCC-CCeEEEecCCCchHHHHHHHcCCC
Q 026688            8 KDYGELMSPATEFF-RMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLF   85 (235)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~   85 (235)
                      ..|.+.+..+.+.| .++.....|+.+++.....+    +....+.+++++...+ ...|.|+|||.+.++..+...   
T Consensus        21 ~LYT~~s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~W----P~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~---   93 (219)
T PF05148_consen   21 QLYTTSSEEALKLFQEDPELFDIYHEGFRQQVKKW----PVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK---   93 (219)
T ss_dssp             HHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTS----SS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S----
T ss_pred             hHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC---
Confidence            45666666666666 34445556888877766544    4455667777776554 468999999999999776532   


Q ss_pred             ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEE
Q 026688           86 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF  165 (235)
Q Consensus        86 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  165 (235)
                      .+|...|+-.                  .+-.+..+|+...|+++++.|+++++.+|. -.+...+++++.|+|||||.|
T Consensus        94 ~~V~SfDLva------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L  154 (219)
T PF05148_consen   94 HKVHSFDLVA------------------PNPRVTACDIANVPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGIL  154 (219)
T ss_dssp             --EEEEESS-------------------SSTTEEES-TTS-S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEE
T ss_pred             ceEEEeeccC------------------CCCCEEEecCccCcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEE
Confidence            2799999843                  123477799999999999999999998887 467789999999999999999


Q ss_pred             EEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE-eeCcEEEEEEecC
Q 026688          166 VGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKP  232 (235)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~~~~~~~k~  232 (235)
                      .|.+...                        ++-+.+.+.+.++..||+..... ....|.++.-+|.
T Consensus       155 ~IAEV~S------------------------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~  198 (219)
T PF05148_consen  155 KIAEVKS------------------------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKI  198 (219)
T ss_dssp             EEEEEGG------------------------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-
T ss_pred             EEEEecc------------------------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEc
Confidence            9998753                        22366788899999999987765 4446666666554

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.63  E-value=4.8e-15  Score=101.19  Aligned_cols=106  Identities=23%  Similarity=0.361  Sum_probs=86.9

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEec
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~  139 (235)
                      +.+|||+|||+|.++..+++.+ ..+++++|+++..++.++.++...+.  ..++++.+.|+.+..  ++.++||+|+++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL--DDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT--TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC--CceEEEEECchhhchhhccCceeEEEEEC
Confidence            3589999999999999999998 56999999999999999999988654  457999999998764  667899999998


Q ss_pred             ccccccC-C-------hHHHHHHHHHhccCCcEEEEEEe
Q 026688          140 AAIHCWS-S-------PSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       140 ~~l~~~~-~-------~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      -.+.... .       ...+++++.++|+|||.+++..+
T Consensus        78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            6654321 1       14789999999999999998765

...

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.63  E-value=1.5e-14  Score=108.50  Aligned_cols=157  Identities=19%  Similarity=0.241  Sum_probs=108.5

Q ss_pred             CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC---------CCCCCC
Q 026688           45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKEN  115 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---------~~~~~~  115 (235)
                      .+...+....+.+...++.+||..|||.|.....|++++.  .|+|+|+|+..++.+.+......         .....+
T Consensus        21 ~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~   98 (218)
T PF05724_consen   21 EPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR   98 (218)
T ss_dssp             TSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred             CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence            3455555555556666678999999999999999999986  99999999999999854332100         001246


Q ss_pred             eeEEecccccCCCCC-CceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhc
Q 026688          116 FLLVRADISRLPFAS-SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI  192 (235)
Q Consensus       116 ~~~~~~d~~~~~~~~-~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (235)
                      +++.++|+.+++... ++||+|+-..+++.++..  .+..+.+.++|+|||.+++.+...+...               .
T Consensus        99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~---------------~  163 (218)
T PF05724_consen   99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE---------------M  163 (218)
T ss_dssp             EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC---------------S
T ss_pred             eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC---------------C
Confidence            789999998875332 479999998888877643  5899999999999999655554432111               1


Q ss_pred             CCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          193 SGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      .+.....+.+++++++. .+|++....
T Consensus       164 ~GPPf~v~~~ev~~l~~-~~f~i~~l~  189 (218)
T PF05724_consen  164 EGPPFSVTEEEVRELFG-PGFEIEELE  189 (218)
T ss_dssp             SSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred             CCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence            13333468899999998 788776554

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.62  E-value=2.7e-14  Score=106.35  Aligned_cols=117  Identities=15%  Similarity=0.126  Sum_probs=90.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~  126 (235)
                      +....+...+...++.+|||+|||+|.++..+++..+..+|+++|+++.+++.+++++...+   ..++++..+|+.+ .
T Consensus        27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~~  103 (196)
T PRK07402         27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPECL  103 (196)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHHH
Confidence            34445677777777899999999999999999887767799999999999999999987655   2468899998864 2


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +.....+|.+++..    ..+...+++++.+.|+|||.+++....
T Consensus       104 ~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        104 AQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             hhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            21123457665422    234468899999999999999998765

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.61  E-value=3.7e-14  Score=106.20  Aligned_cols=114  Identities=14%  Similarity=0.114  Sum_probs=90.9

Q ss_pred             cCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc---------CCCCCCCeeEEecccccCC
Q 026688           57 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKENFLLVRADISRLP  127 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------~~~~~~~~~~~~~d~~~~~  127 (235)
                      +...++.+||+.|||.|..+..|+.++.  .|+|+|+|+..++.+.+.....         ......++++.++|+.+++
T Consensus        39 l~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~  116 (226)
T PRK13256         39 LNINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP  116 (226)
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence            4434568999999999999999999987  8999999999999986632100         0011347899999999875


Q ss_pred             CC---CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEecc
Q 026688          128 FA---SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       128 ~~---~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ..   .+.||+|+-..++++++..  .+..+.+.++|+|||.+++.....
T Consensus       117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~  166 (226)
T PRK13256        117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH  166 (226)
T ss_pred             ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence            32   2589999999999998754  488999999999999999988754

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=2.4e-14  Score=106.79  Aligned_cols=126  Identities=21%  Similarity=0.204  Sum_probs=107.1

Q ss_pred             cccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe
Q 026688           38 FVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF  116 (235)
Q Consensus        38 ~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~  116 (235)
                      +.+....-.......|...+...++.+|||.|.|+|.++..|+. .++.++|+.+|+.++..+.|++++...++  ..++
T Consensus        71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v  148 (256)
T COG2519          71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRV  148 (256)
T ss_pred             CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccce
Confidence            44444455667788999999999999999999999999999997 46778999999999999999999998765  4458


Q ss_pred             eEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       117 ~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .+...|+.+.-.+ +.||+|+     -.+++|..++.++.+.|+|||.+++-.+.
T Consensus       149 ~~~~~Dv~~~~~~-~~vDav~-----LDmp~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         149 TLKLGDVREGIDE-EDVDAVF-----LDLPDPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             EEEeccccccccc-cccCEEE-----EcCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence            9999999886544 4899999     45889999999999999999999986654

>PHA03411 putative methyltransferase; Provisional

Probab=99.61  E-value=6.1e-14  Score=107.03  Aligned_cols=143  Identities=13%  Similarity=0.123  Sum_probs=104.1

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688           41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  120 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (235)
                      +.|..+...+..+.  +......+|||+|||+|.++..++++.+..+|+++|+++.+++.+++++        .++.+.+
T Consensus        46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~  115 (279)
T PHA03411         46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWIT  115 (279)
T ss_pred             eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEE
Confidence            44445666654442  2233467999999999999998888754569999999999999998753        3678899


Q ss_pred             cccccCCCCCCceeEEEecccccccCCh--------------------HHHHHHHHHhccCCcEEEEEEeccCCCcccch
Q 026688          121 ADISRLPFASSSIDAVHAGAAIHCWSSP--------------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIP  180 (235)
Q Consensus       121 ~d~~~~~~~~~~~D~i~~~~~l~~~~~~--------------------~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~  180 (235)
                      .|+.+... .++||+|+++-.+.+.+..                    .+++.....+|+|+|.+++.....+       
T Consensus       116 ~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-------  187 (279)
T PHA03411        116 SDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-------  187 (279)
T ss_pred             Cchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc-------
Confidence            99987643 4689999998888775321                    2456677888999997776633221       


Q ss_pred             hHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCc
Q 026688          181 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  214 (235)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  214 (235)
                                   -...-+++++++++++++||.
T Consensus       188 -------------~y~~sl~~~~y~~~l~~~g~~  208 (279)
T PHA03411        188 -------------YYDGTMKSNKYLKWSKQTGLV  208 (279)
T ss_pred             -------------cccccCCHHHHHHHHHhcCcE
Confidence                         112236889999999999996

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.61  E-value=3.9e-14  Score=106.80  Aligned_cols=114  Identities=17%  Similarity=0.126  Sum_probs=92.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .......+.+.+...++.+|||+|||+|..+..+++...  +++++|+++.+++.+++++...+   ..++++..+|..+
T Consensus        63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~  137 (212)
T PRK00312         63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWK  137 (212)
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCccc
Confidence            455667777888877889999999999999988887754  89999999999999999988765   3468899999865


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .....+.||+|++...++++      .+.+.+.|+|||.+++...
T Consensus       138 ~~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        138 GWPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CCCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence            32234789999998766554      4567899999999998765

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.59  E-value=9.6e-14  Score=116.72  Aligned_cols=128  Identities=13%  Similarity=0.063  Sum_probs=96.9

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +.+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...+.  ..++.+..+|+.+. ++.++||+|+++-.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l--~~~v~~~~~D~~~~-~~~~~fDlIvsNPP  215 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV--TDRIQIIHSNWFEN-IEKQKFDFIVSNPP  215 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--ccceeeeecchhhh-CcCCCccEEEECCC
Confidence            4689999999999999999887778999999999999999999877654  34788999997542 33468999999532


Q ss_pred             c--------------cccCC------------hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCc
Q 026688          142 I--------------HCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS  195 (235)
Q Consensus       142 l--------------~~~~~------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (235)
                      .              .|.+.            ...+++.+.+.|+|||.+++....                        
T Consensus       216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~------------------------  271 (506)
T PRK01544        216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF------------------------  271 (506)
T ss_pred             CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC------------------------
Confidence            1              11110            125677888999999999875321                        


Q ss_pred             eeecCHHHHHHHHHHcCCceeEEE
Q 026688          196 YTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       196 ~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                         -..+.+.+++.+.||..+.+.
T Consensus       272 ---~q~~~v~~~~~~~g~~~~~~~  292 (506)
T PRK01544        272 ---KQEEAVTQIFLDHGYNIESVY  292 (506)
T ss_pred             ---chHHHHHHHHHhcCCCceEEE
Confidence               234678888889999866554

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.59  E-value=9.6e-14  Score=105.36  Aligned_cols=154  Identities=18%  Similarity=0.288  Sum_probs=113.7

Q ss_pred             eecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCC
Q 026688           34 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP  112 (235)
Q Consensus        34 w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~  112 (235)
                      |...+.+.-.-.....+..|...+...|+.+|||.|.|+|.++..+++. +|.++|+..|..++..+.|++++...++  
T Consensus        13 ~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl--   90 (247)
T PF08704_consen   13 WTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL--   90 (247)
T ss_dssp             HHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--
T ss_pred             HHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--
Confidence            3333433333346678889999999999999999999999999999975 7788999999999999999999999876  


Q ss_pred             CCCeeEEecccccCCCC---CCceeEEEecccccccCChHHHHHHHHHhc-cCCcEEEEEEeccCCCcccchhHHHHHHh
Q 026688          113 KENFLLVRADISRLPFA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTYIVDGPFNLIPFSRLLRQN  188 (235)
Q Consensus       113 ~~~~~~~~~d~~~~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-~pgG~li~~~~~~~~~~~~~~~~~~~~~~  188 (235)
                      ..++++...|+.+..+.   +..+|.|+     -.+++|..++..+.++| +|||.+.+-.+..          .     
T Consensus        91 ~~~v~~~~~Dv~~~g~~~~~~~~~Davf-----LDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i----------e-----  150 (247)
T PF08704_consen   91 DDNVTVHHRDVCEEGFDEELESDFDAVF-----LDLPDPWEAIPHAKRALKKPGGRICCFSPCI----------E-----  150 (247)
T ss_dssp             CTTEEEEES-GGCG--STT-TTSEEEEE-----EESSSGGGGHHHHHHHE-EEEEEEEEEESSH----------H-----
T ss_pred             CCCceeEecceecccccccccCcccEEE-----EeCCCHHHHHHHHHHHHhcCCceEEEECCCH----------H-----
Confidence            56899999999764442   36799998     45889999999999999 8999998766543          1     


Q ss_pred             HhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          189 MMQISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                                 ........|++.||..+++..
T Consensus       151 -----------Qv~~~~~~L~~~gf~~i~~~E  171 (247)
T PF08704_consen  151 -----------QVQKTVEALREHGFTDIETVE  171 (247)
T ss_dssp             -----------HHHHHHHHHHHTTEEEEEEEE
T ss_pred             -----------HHHHHHHHHHHCCCeeeEEEE
Confidence                       123455677888998776653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=5.4e-13  Score=104.00  Aligned_cols=157  Identities=22%  Similarity=0.257  Sum_probs=111.0

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      +....+.+.+......... +|||+|||+|..+..++...+.+.|+++|+|+..++.|++++..++.   .++.++..|.
T Consensus        94 ~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dl  169 (280)
T COG2890          94 PDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDL  169 (280)
T ss_pred             CchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeec
Confidence            3344556665533443333 89999999999999999999999999999999999999999988764   4566666676


Q ss_pred             ccCCCCCCceeEEEecccc--c---cc-C-----Ch--------------HHHHHHHHHhccCCcEEEEEEeccCCCccc
Q 026688          124 SRLPFASSSIDAVHAGAAI--H---CW-S-----SP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNL  178 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l--~---~~-~-----~~--------------~~~l~~~~~~L~pgG~li~~~~~~~~~~~~  178 (235)
                      .+ +. .++||+|+++--.  .   +. +     +|              ..++..+.+.|+|||.+++....       
T Consensus       170 f~-~~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-------  240 (280)
T COG2890         170 FE-PL-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-------  240 (280)
T ss_pred             cc-cc-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-------
Confidence            54 22 2489999997321  1   11 1     11              36788899999999988876542       


Q ss_pred             chhHHHHHHhHhhcCCceeecCHHHHHHHHHHcC-CceeEEE--eeCcEEEEEEecCC
Q 026688          179 IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG-LVDFKCT--RNRGFVMFTATKPS  233 (235)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~--~~~~~~~~~~~k~~  233 (235)
                                          -..+.+.+++.+.| |..+...  ..+...++.+++..
T Consensus       241 --------------------~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~~  278 (280)
T COG2890         241 --------------------TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKLRS  278 (280)
T ss_pred             --------------------CcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEecc
Confidence                                23577899999999 6655554  34455556555443

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.1e-13  Score=101.01  Aligned_cols=114  Identities=20%  Similarity=0.179  Sum_probs=97.7

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .......+.+.+...++.+|||||||+|+.+.-+++...  +|+.+|..+...+.|++++...+   ..++.+.++|-..
T Consensus        57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~  131 (209)
T COG2518          57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSK  131 (209)
T ss_pred             CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCccc
Confidence            445677888999999999999999999999999999865  99999999999999999999877   4569999999977


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      --.+...||.|+.......+|      +.+.+.|+|||++++-..
T Consensus       132 G~~~~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         132 GWPEEAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCCCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence            433458899999988877665      347888999999998765

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.57  E-value=4.9e-13  Score=102.92  Aligned_cols=141  Identities=16%  Similarity=0.102  Sum_probs=100.9

Q ss_pred             CHHHHHHHHhhcCCC-CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .+.+.+.+...+... .+.+|||+|||+|.++..+++..+..+++++|+|+.+++.+++++..++      .++.++|+.
T Consensus        70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~------~~~~~~D~~  143 (251)
T TIGR03704        70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG------GTVHEGDLY  143 (251)
T ss_pred             HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CEEEEeech
Confidence            445566666555432 3458999999999999999988776799999999999999999987542      468888886


Q ss_pred             cC-C-CCCCceeEEEeccccc--------------ccC--------C----hHHHHHHHHHhccCCcEEEEEEeccCCCc
Q 026688          125 RL-P-FASSSIDAVHAGAAIH--------------CWS--------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPF  176 (235)
Q Consensus       125 ~~-~-~~~~~~D~i~~~~~l~--------------~~~--------~----~~~~l~~~~~~L~pgG~li~~~~~~~~~~  176 (235)
                      +. + ...++||+|+++--..              |.+        +    ...+++.+.+.|+|||.+++.....    
T Consensus       144 ~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~----  219 (251)
T TIGR03704       144 DALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER----  219 (251)
T ss_pred             hhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc----
Confidence            52 2 1135799999874321              100        1    1367778889999999999865421    


Q ss_pred             ccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          177 NLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                                             ...++..++++.||......
T Consensus       220 -----------------------~~~~v~~~l~~~g~~~~~~~  239 (251)
T TIGR03704       220 -----------------------QAPLAVEAFARAGLIARVAS  239 (251)
T ss_pred             -----------------------hHHHHHHHHHHCCCCceeeE
Confidence                                   23567888899999754444

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.56  E-value=5e-14  Score=104.85  Aligned_cols=117  Identities=19%  Similarity=0.203  Sum_probs=91.5

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .......+++++...++.+|||||||+|+.+..+++. ++...|+++|+++...+.|++++...+   ..++.+.++|..
T Consensus        57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~  133 (209)
T PF01135_consen   57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGS  133 (209)
T ss_dssp             -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GG
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchh
Confidence            4667788899999999999999999999999999887 455689999999999999999998876   458999999987


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ........||.|++......++      ..+.+.|++||+|++....
T Consensus       134 ~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~~  174 (209)
T PF01135_consen  134 EGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIGQ  174 (209)
T ss_dssp             GTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEESS
T ss_pred             hccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEcc
Confidence            6433457899999988776443      4578889999999986553

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.54  E-value=1.2e-13  Score=102.62  Aligned_cols=174  Identities=19%  Similarity=0.258  Sum_probs=125.6

Q ss_pred             cccccccChhhhhhccc-ccccccccceecccccCCCCCCHHHHHHHHhhcCCCC-CCeEEEecCCCchHHHHHHHcCCC
Q 026688            8 KDYGELMSPATEFFRMP-FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLF   85 (235)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~   85 (235)
                      ..|...+.-+..+|..+ .....|+.+++.....+    +...++.|++.+...+ ...|.|+|||.+.++.  ...   
T Consensus       129 qLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kW----P~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~--~~~---  199 (325)
T KOG3045|consen  129 QLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKW----PENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS--SER---  199 (325)
T ss_pred             hhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhC----CCChHHHHHHHHHhCcCceEEEecccchhhhhh--ccc---
Confidence            35666665555566443 44455777777666544    3344455555554333 5789999999998876  222   


Q ss_pred             ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEE
Q 026688           86 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF  165 (235)
Q Consensus        86 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  165 (235)
                      -.|...|+-+                  .+-+++.+|+.+.|+++++.|+++++.++. -.+...+++++.|+|+|||.+
T Consensus       200 ~kV~SfDL~a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l  260 (325)
T KOG3045|consen  200 HKVHSFDLVA------------------VNERVIACDMRNVPLEDESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLL  260 (325)
T ss_pred             cceeeeeeec------------------CCCceeeccccCCcCccCcccEEEeeHhhh-cccHHHHHHHHHHHhccCceE
Confidence            2799999833                  245578899999999999999999988887 467889999999999999999


Q ss_pred             EEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE-eeCcEEEEEEecCC
Q 026688          166 VGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPS  233 (235)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~~~~~~~k~~  233 (235)
                      .|.+...                        ++-+...+.+.+...||.+.... ....|+++.-+|.+
T Consensus       261 ~IAEv~S------------------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~  305 (325)
T KOG3045|consen  261 YIAEVKS------------------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTP  305 (325)
T ss_pred             EEEehhh------------------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence            9988643                        23456778899999999987775 34467777777654

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.53  E-value=1.5e-13  Score=99.84  Aligned_cols=116  Identities=27%  Similarity=0.314  Sum_probs=89.3

Q ss_pred             CHHHHHHHHhhcCCCC--CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           46 PEKEFELMKGYLKPVL--GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      ..+..+..++++....  +.-|||||||+|-.+..+.+.+.  .++|+|+|+.|++.|.++.-+        -.+..+|+
T Consensus        33 Q~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~e--------gdlil~DM  102 (270)
T KOG1541|consen   33 QAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERELE--------GDLILCDM  102 (270)
T ss_pred             hHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhhh--------cCeeeeec
Confidence            3455566666665443  78999999999999999988886  899999999999999974322        23677787


Q ss_pred             -ccCCCCCCceeEEEecccccccC-------Ch----HHHHHHHHHhccCCcEEEEEEec
Q 026688          124 -SRLPFASSSIDAVHAGAAIHCWS-------SP----STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       124 -~~~~~~~~~~D~i~~~~~l~~~~-------~~----~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                       +-+|+..+.||.+|+...+.++=       +|    ..++..++.+|++|+..++....
T Consensus       103 G~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp  162 (270)
T KOG1541|consen  103 GEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP  162 (270)
T ss_pred             CCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence             44789899999999887765542       22    25788899999999998886543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.52  E-value=5.4e-13  Score=105.59  Aligned_cols=115  Identities=16%  Similarity=0.163  Sum_probs=90.5

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .......+.+.+...++.+|||+|||+|.++..+++... ...|+++|+++.+++.|++++...+   ..++.+..+|..
T Consensus        65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~  141 (322)
T PRK13943         65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGY  141 (322)
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChh
Confidence            345566777777777789999999999999999988754 2479999999999999999887765   346888999987


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ........||+|++...+.+.      ...+.+.|+|||.+++..
T Consensus       142 ~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        142 YGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             hcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence            654444679999987665543      345778999999988854

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.51  E-value=3.8e-13  Score=111.66  Aligned_cols=124  Identities=22%  Similarity=0.250  Sum_probs=97.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ......+...+...++.+|||+|||+|..+..+++.. ..++|+++|+++.+++.+++++...+   ..++.+.+.|+.+
T Consensus       238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g---~~~v~~~~~D~~~  314 (434)
T PRK14901        238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG---LKSIKILAADSRN  314 (434)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC---CCeEEEEeCChhh
Confidence            3444555666777778999999999999999998874 34689999999999999999998766   3468999999987


Q ss_pred             CC----CCCCceeEEEec------ccccccCC----------------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          126 LP----FASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       126 ~~----~~~~~~D~i~~~------~~l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      .+    ...++||.|++.      .++.+-++                ..+++.++.++|||||.|+.++.+..
T Consensus       315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~  388 (434)
T PRK14901        315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH  388 (434)
T ss_pred             cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            64    335689999974      23333333                24779999999999999999887653

>PRK04457 spermidine synthase; Provisional

Probab=99.51  E-value=3.2e-13  Score=104.52  Aligned_cols=110  Identities=14%  Similarity=0.140  Sum_probs=86.2

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEEEe
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHA  138 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~  138 (235)
                      ..+++|||||||+|.++..+++..|..+++++|+++.+++.|++++...+.  ..+++++.+|..+. ....++||+|++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~--~~rv~v~~~Da~~~l~~~~~~yD~I~~  142 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN--GERFEVIEADGAEYIAVHRHSTDVILV  142 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC--CCceEEEECCHHHHHHhCCCCCCEEEE
Confidence            346899999999999999999988888999999999999999998764322  35899999998653 222368999998


Q ss_pred             ccccc-ccC---ChHHHHHHHHHhccCCcEEEEEEec
Q 026688          139 GAAIH-CWS---SPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       139 ~~~l~-~~~---~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ...-. ..+   ....+++++.+.|+|||.+++..+.
T Consensus       143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~  179 (262)
T PRK04457        143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS  179 (262)
T ss_pred             eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence            63211 111   1258999999999999999997554

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.50  E-value=4e-13  Score=111.28  Aligned_cols=125  Identities=22%  Similarity=0.192  Sum_probs=95.5

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ......+...+.+.++.+|||+|||+|..+..+++..+.++++++|+++.+++.+++++...+.  ...+.+..+|....
T Consensus       224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~  301 (426)
T TIGR00563       224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGP  301 (426)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeccccccc
Confidence            3444566667777788999999999999999999876567999999999999999999987654  12344466666544


Q ss_pred             CC--CCCceeEEEec------ccccccCC----------------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          127 PF--ASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       127 ~~--~~~~~D~i~~~------~~l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +.  +.++||.|++.      +++.+.++                ..++|+++.++|+|||.+++++.+..
T Consensus       302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            32  35689999963      23444333                24789999999999999999998764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.50  E-value=4.9e-13  Score=88.73  Aligned_cols=101  Identities=27%  Similarity=0.406  Sum_probs=83.3

Q ss_pred             eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCCceeEEEecccc
Q 026688           64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAAI  142 (235)
Q Consensus        64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~~~l  142 (235)
                      +++|+|||.|..+..+++ ....+++++|+++..+..+++......   ..++++...|..+... ..+++|+|++..++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~   76 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL---ADNVEVLKGDAEELPPEADESFDVIISDPPL   76 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc---ccceEEEEcChhhhccccCCceEEEEEccce
Confidence            589999999999999988 345699999999999999885333222   4578899999987643 45789999999999


Q ss_pred             cc-cCChHHHHHHHHHhccCCcEEEEE
Q 026688          143 HC-WSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       143 ~~-~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      ++ ......+++.+.+.++|||.+++.
T Consensus        77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          77 HHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            98 666789999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.49  E-value=8.4e-13  Score=99.09  Aligned_cols=159  Identities=17%  Similarity=0.173  Sum_probs=104.3

Q ss_pred             CHHHHHHHHhhc-----CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688           46 PEKEFELMKGYL-----KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  120 (235)
Q Consensus        46 ~~~~~~~i~~~~-----~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (235)
                      +.+..+.++..-     ......++||||+|.|..+..++....  +|++.|.|+.|....+++          +.++  
T Consensus        74 S~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~v--  139 (265)
T PF05219_consen   74 SEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTV--  139 (265)
T ss_pred             cHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeE--
Confidence            455555555533     222467899999999999999998876  899999999997666542          3333  


Q ss_pred             cccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHH----HHHHhHhhcCCce
Q 026688          121 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR----LLRQNMMQISGSY  196 (235)
Q Consensus       121 ~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  196 (235)
                      .+..+..-...+||+|.|..++....+|..+|+.+++.|+|+|.+++....+-.+  ......    +....+. ..+..
T Consensus       140 l~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~p--yVE~~~g~~~~P~e~l~-~~g~~  216 (265)
T PF05219_consen  140 LDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRP--YVEFGGGKSNRPSELLP-VKGAT  216 (265)
T ss_pred             EehhhhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccc--cEEcCCCCCCCchhhcC-CCCCc
Confidence            2333333234689999999999999999999999999999999999876543221  111000    0000000 01110


Q ss_pred             eecCHHHHHHHHHHcCCceeEEEee
Q 026688          197 TFLSEREIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       197 ~~~~~~~~~~~l~~~Gf~~~~~~~~  221 (235)
                      ..-....+.+.++.+||++....+.
T Consensus       217 ~E~~v~~l~~v~~p~GF~v~~~tr~  241 (265)
T PF05219_consen  217 FEEQVSSLVNVFEPAGFEVERWTRL  241 (265)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecc
Confidence            0111233447889999998777643

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.48  E-value=1.6e-12  Score=107.74  Aligned_cols=121  Identities=21%  Similarity=0.243  Sum_probs=93.5

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  127 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-  127 (235)
                      ....+...+...++.+|||+|||+|..+..+++..+...|+++|+++.+++.+++++...+.    ++.+.++|+.+.+ 
T Consensus       232 ~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~----~~~~~~~D~~~~~~  307 (427)
T PRK10901        232 AAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL----KATVIVGDARDPAQ  307 (427)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEcCcccchh
Confidence            34455566777778999999999999999999987657999999999999999999887643    4678899987643 


Q ss_pred             -CCCCceeEEEecccc------cc------cCCh----------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          128 -FASSSIDAVHAGAAI------HC------WSSP----------STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l------~~------~~~~----------~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                       +..++||.|++...+      .+      ...+          .+++..+.++|+|||.+++++.+..
T Consensus       308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~  376 (427)
T PRK10901        308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL  376 (427)
T ss_pred             hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence             234679999964321      11      1111          3689999999999999999987653

>PRK00811 spermidine synthase; Provisional

Probab=99.46  E-value=8.9e-13  Score=103.27  Aligned_cols=109  Identities=15%  Similarity=0.206  Sum_probs=84.3

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC--CCCCCCeeEEecccccC-CCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADISRL-PFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D~i~  137 (235)
                      .+++||++|||+|..+..++++....+|+++|+++.+++.|++.+....  ....++++++.+|.... ....++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            3689999999999999999887545689999999999999999886432  11256899999998763 22357899999


Q ss_pred             ecccccccCCh----HHHHHHHHHhccCCcEEEEEE
Q 026688          138 AGAAIHCWSSP----STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       138 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +...-...+..    ..+++.+++.|+|||.+++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            86543322221    477899999999999988753

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.46  E-value=7.9e-12  Score=92.45  Aligned_cols=104  Identities=20%  Similarity=0.250  Sum_probs=75.8

Q ss_pred             HhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----
Q 026688           54 KGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  127 (235)
Q Consensus        54 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----  127 (235)
                      .......++.+|||+|||+|.++..+++.. +..+++++|+++.+         .     ..++.+.+.|+.+.+     
T Consensus        25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-----~~~i~~~~~d~~~~~~~~~l   90 (188)
T TIGR00438        25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-----IENVDFIRGDFTDEEVLNKI   90 (188)
T ss_pred             HHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-----CCCceEEEeeCCChhHHHHH
Confidence            334444568999999999999999888875 44689999999854         1     235778888886532     


Q ss_pred             ---CCCCceeEEEecccc--------cccC---ChHHHHHHHHHhccCCcEEEEEEec
Q 026688          128 ---FASSSIDAVHAGAAI--------HCWS---SPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ---~~~~~~D~i~~~~~l--------~~~~---~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                         ++.++||+|++....        .|..   ....+++.+.++|+|||.+++..+.
T Consensus        91 ~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438        91 RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence               345689999986432        1111   1257899999999999999987543

>PRK01581 speE spermidine synthase; Validated

Probab=99.46  E-value=3.8e-12  Score=100.92  Aligned_cols=150  Identities=18%  Similarity=0.113  Sum_probs=101.6

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHH--hhh--cCCCCCCCeeEEecccccC-CCCCCceeE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQ--ESNFPKENFLLVRADISRL-PFASSSIDA  135 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--~~~--~~~~~~~~~~~~~~d~~~~-~~~~~~~D~  135 (235)
                      .+++||++|||+|..+..+++..+..+|+++|+++.+++.|++.  +..  .+....+++++..+|..+. ....+.||+
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV  229 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV  229 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence            36899999999999999998876567999999999999999972  211  1111256899999999763 333568999


Q ss_pred             EEecccccc---cCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHH
Q 026688          136 VHAGAAIHC---WSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  210 (235)
Q Consensus       136 i~~~~~l~~---~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  210 (235)
                      |++...-..   ...  ...+++.+++.|+|||.+++.....        +...              .....+.+.+++
T Consensus       230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp--------~~~~--------------~~~~~i~~tL~~  287 (374)
T PRK01581        230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP--------ADAP--------------LVYWSIGNTIEH  287 (374)
T ss_pred             EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh--------hhhH--------------HHHHHHHHHHHH
Confidence            998742110   000  1468999999999999988753221        1000              001236688889


Q ss_pred             cCCceeEEEe----eC-cEEEEEEecC
Q 026688          211 CGLVDFKCTR----NR-GFVMFTATKP  232 (235)
Q Consensus       211 ~Gf~~~~~~~----~~-~~~~~~~~k~  232 (235)
                      +|+.+.....    ++ .+.+.+|.+.
T Consensus       288 af~~v~~y~t~vPsyg~~WgF~~as~~  314 (374)
T PRK01581        288 AGLTVKSYHTIVPSFGTDWGFHIAANS  314 (374)
T ss_pred             hCCceEEEEEecCCCCCceEEEEEeCC
Confidence            9987655442    23 3666777653

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.45  E-value=2.1e-12  Score=106.76  Aligned_cols=123  Identities=15%  Similarity=0.174  Sum_probs=94.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      ....+...+...++.+|||+|||+|..+.+++... +..+|+++|+++.+++.+++++...+.   .++.+...|...++
T Consensus       225 ~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~  301 (431)
T PRK14903        225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLT  301 (431)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhh
Confidence            33445556677778999999999999999998864 456999999999999999999987653   35889999987754


Q ss_pred             -CCCCceeEEEecccc---ccc---CC----------------hHHHHHHHHHhccCCcEEEEEEeccCC
Q 026688          128 -FASSSIDAVHAGAAI---HCW---SS----------------PSTGVAEISRVLRPGGVFVGTTYIVDG  174 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l---~~~---~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~~  174 (235)
                       ...++||.|++....   ..+   ++                ..++|.++.++|+|||.++.++.+...
T Consensus       302 ~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  371 (431)
T PRK14903        302 EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK  371 (431)
T ss_pred             hhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence             335689999974222   111   11                136788999999999999999988653

>TIGR00417 speE spermidine synthase

Probab=99.44  E-value=8.3e-12  Score=97.37  Aligned_cols=107  Identities=13%  Similarity=0.158  Sum_probs=81.4

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-CCCCCCeeEEecccccC-CCCCCceeEEEec
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~  139 (235)
                      +++||++|||+|..+..+++..+..+++++|+++.+++.+++.+.... ....+++++...|..+. ....++||+|++.
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D  152 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD  152 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence            569999999999999999887655689999999999999999875432 11245788888887542 2224689999986


Q ss_pred             ccccccCC----hHHHHHHHHHhccCCcEEEEE
Q 026688          140 AAIHCWSS----PSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       140 ~~l~~~~~----~~~~l~~~~~~L~pgG~li~~  168 (235)
                      ......+.    ...+++.+++.|+|||.+++.
T Consensus       153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            54322222    247889999999999999986

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.44  E-value=3.8e-12  Score=92.52  Aligned_cols=109  Identities=10%  Similarity=0.124  Sum_probs=82.7

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      +.+.+.+...++.+|||+|||+|.++..++++.  .+++++|+++.+++.+++++..     ..++++..+|+.+.+++.
T Consensus         3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~   75 (169)
T smart00650        3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPK   75 (169)
T ss_pred             HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCccc
Confidence            456667776677899999999999999999885  4999999999999999988753     347899999999887666


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHh--ccCCcEEEEEE
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRV--LRPGGVFVGTT  169 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~--L~pgG~li~~~  169 (235)
                      .+||.|+++..++ ..  ...+.++.+.  +.++|.+++..
T Consensus        76 ~~~d~vi~n~Py~-~~--~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       76 LQPYKVVGNLPYN-IS--TPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             cCCCEEEECCCcc-cH--HHHHHHHHhcCCCcceEEEEEEH
Confidence            6799999876554 22  2344444433  33667776543

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.44  E-value=4.7e-13  Score=98.67  Aligned_cols=119  Identities=24%  Similarity=0.211  Sum_probs=83.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      +......+......  .+.++|+|||+|..++.++....  +|+|+|+|+.||+.++++......  .....+...+..+
T Consensus        20 Ptdw~~~ia~~~~~--h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~   93 (261)
T KOG3010|consen   20 PTDWFKKIASRTEG--HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVD   93 (261)
T ss_pred             cHHHHHHHHhhCCC--cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccc--cCCcccccccccc
Confidence            34455555555544  34999999999988888888765  999999999999999886543211  1123333333333


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCc-EEEEEEec
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTYI  171 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG-~li~~~~~  171 (235)
                      +--.+++.|+|++..++|+++ .+.+.+.++|+||+.| .+.+-..+
T Consensus        94 L~g~e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen   94 LLGGEESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             ccCCCcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            322368999999999999875 4578999999999977 55544433

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.44  E-value=7e-12  Score=92.48  Aligned_cols=147  Identities=18%  Similarity=0.245  Sum_probs=94.9

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC----CCC------------------------
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NFP------------------------  112 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~------------------------  112 (235)
                      .+..+|||||..|.++..+++.+-...+.|+||++..++.|++++....    ...                        
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            3689999999999999999998766789999999999999999875311    000                        


Q ss_pred             -----------CCCeeEEecccccCCCCCCceeEEEeccccccc----CC--hHHHHHHHHHhccCCcEEEEEEeccCCC
Q 026688          113 -----------KENFLLVRADISRLPFASSSIDAVHAGAAIHCW----SS--PSTGVAEISRVLRPGGVFVGTTYIVDGP  175 (235)
Q Consensus       113 -----------~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~----~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~  175 (235)
                                 ..+..+...|+.+  .....||+|+|..+--++    .|  ...+++++.++|.|||+|++.-...   
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpW---  212 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPW---  212 (288)
T ss_pred             cccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCch---
Confidence                       0011112222221  234689999997654322    22  2589999999999999999853322   


Q ss_pred             cccchhHHHHHHhHh-hcCCceeecCHHHHHHHHHHc--CCce
Q 026688          176 FNLIPFSRLLRQNMM-QISGSYTFLSEREIEDLCRAC--GLVD  215 (235)
Q Consensus       176 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~--Gf~~  215 (235)
                         ..+...-+..-. .......++.++.++.++.+.  ||+.
T Consensus       213 ---ksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~  252 (288)
T KOG2899|consen  213 ---KSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLES  252 (288)
T ss_pred             ---HHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheee
Confidence               112111111101 111224467899999999887  5653

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.44  E-value=2e-12  Score=100.47  Aligned_cols=118  Identities=19%  Similarity=0.140  Sum_probs=90.8

Q ss_pred             HHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           53 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        53 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      ....+...++.+|||+|||+|..+..+++... ...|+++|+++.+++.+++++...+.   .++.+...|....+...+
T Consensus        63 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~  139 (264)
T TIGR00446        63 PPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFGAAVP  139 (264)
T ss_pred             HHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhhhhcc
Confidence            34456667789999999999999999888643 35899999999999999999987653   468899999876554446


Q ss_pred             ceeEEEeccc------ccccCC----------------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          132 SIDAVHAGAA------IHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       132 ~~D~i~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      .||.|++.-.      +.+-++                ..++|+.+.++|+|||+|+.++.+..
T Consensus       140 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~  203 (264)
T TIGR00446       140 KFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE  203 (264)
T ss_pred             CCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            7999997422      111111                12589999999999999999987754

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.44  E-value=2.9e-12  Score=99.94  Aligned_cols=150  Identities=12%  Similarity=0.110  Sum_probs=110.7

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      -...+|+|+|.|..+..+...+|  .+-+++.+...+..+...+.       +.+..+.+|..+. .|  +-|+|++.++
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P--~~daI~mkWi  245 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TP--KGDAIWMKWI  245 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CC--CcCeEEEEee
Confidence            47899999999999999999888  78899998777766666542       2477788888765 33  3479999999


Q ss_pred             ccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccch----hHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCce
Q 026688          142 IHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIP----FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  215 (235)
Q Consensus       142 l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  215 (235)
                      +||++|.+  ++|++|+..|+|||.|++.+...+.......    ........+..........+..+++.++.++||.+
T Consensus       246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~  325 (342)
T KOG3178|consen  246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPV  325 (342)
T ss_pred             cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCce
Confidence            99999885  9999999999999999999985543111111    11111111112223355678999999999999998


Q ss_pred             eEEEeeCc
Q 026688          216 FKCTRNRG  223 (235)
Q Consensus       216 ~~~~~~~~  223 (235)
                      ..+...+.
T Consensus       326 ~~~~~~~~  333 (342)
T KOG3178|consen  326 CMVALTAY  333 (342)
T ss_pred             eEEEeccC
Confidence            88876553

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.41  E-value=2.2e-12  Score=107.50  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=91.5

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      ......+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.+++++...+.   .++++.+.|+...+ +
T Consensus       240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~-~  315 (445)
T PRK14904        240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS-P  315 (445)
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc-c
Confidence            344455666678899999999999998888753 245899999999999999999987653   46899999997764 3


Q ss_pred             CCceeEEEecc------cccccC------C----------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          130 SSSIDAVHAGA------AIHCWS------S----------PSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       130 ~~~~D~i~~~~------~l~~~~------~----------~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ..+||+|++..      ++..-+      +          ...++..+.++|+|||++++++.+..
T Consensus       316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            56899999631      111111      1          12589999999999999999998764

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.41  E-value=4e-12  Score=105.99  Aligned_cols=119  Identities=24%  Similarity=0.244  Sum_probs=92.1

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  127 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-  127 (235)
                      ...+...+...++.+|||+|||+|..+..+++.. +.++++++|+++.+++.+++++...+.   .++++.++|+.+.+ 
T Consensus       239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~  315 (444)
T PRK14902        239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHE  315 (444)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccc
Confidence            3455556666778899999999999999998874 567999999999999999999987653   35899999997753 


Q ss_pred             -CCCCceeEEEeccc------ccccCC----------------hHHHHHHHHHhccCCcEEEEEEecc
Q 026688          128 -FASSSIDAVHAGAA------IHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       128 -~~~~~~D~i~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                       ++ ++||+|++...      +.+-++                ...+++.+.++|+|||.++.++...
T Consensus       316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             hhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence             33 68999997532      111111                1257999999999999999887665

>PRK03612 spermidine synthase; Provisional

Probab=99.41  E-value=3.9e-12  Score=107.66  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=82.7

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHH--hhhcC--CCCCCCeeEEecccccC-CCCCCcee
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQES--NFPKENFLLVRADISRL-PFASSSID  134 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D  134 (235)
                      +++++|||+|||+|..+..++++.+..+++++|+|+++++.++++  +...+  ...+++++++..|..+. ....++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            346899999999999999998764346999999999999999983  32211  11246899999998763 22346899


Q ss_pred             EEEecccccccCCh-----HHHHHHHHHhccCCcEEEEEE
Q 026688          135 AVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       135 ~i~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +|++.......+..     ..+++.+++.|+|||.+++..
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            99987544332221     368899999999999998765

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=99.40  E-value=1.2e-11  Score=90.52  Aligned_cols=147  Identities=12%  Similarity=0.170  Sum_probs=110.8

Q ss_pred             CHHHHHHHHhhcCCCC----CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           46 PEKEFELMKGYLKPVL----GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~----~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      +.-+++++.+......    ..++|||||=+......-..   --.|+.||+++.                  .-.+...
T Consensus        32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~---~fdvt~IDLns~------------------~~~I~qq   90 (219)
T PF11968_consen   32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG---WFDVTRIDLNSQ------------------HPGILQQ   90 (219)
T ss_pred             hHHHHHHhhhhccccccccccceEEeecccCCCCcccccC---ceeeEEeecCCC------------------CCCceee
Confidence            3445566655543322    36999999976554443222   236999999762                  2336778


Q ss_pred             ccccCCCC---CCceeEEEecccccccCChH---HHHHHHHHhccCCcE-----EEEEEeccCCCcccchhHHHHHHhHh
Q 026688          122 DISRLPFA---SSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGV-----FVGTTYIVDGPFNLIPFSRLLRQNMM  190 (235)
Q Consensus       122 d~~~~~~~---~~~~D~i~~~~~l~~~~~~~---~~l~~~~~~L~pgG~-----li~~~~~~~~~~~~~~~~~~~~~~~~  190 (235)
                      |+.+.|+|   .+.||+|.++.++.+++++.   ..++++.+.|+|+|.     |+++.+..                  
T Consensus        91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~------------------  152 (219)
T PF11968_consen   91 DFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP------------------  152 (219)
T ss_pred             ccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch------------------
Confidence            99887754   57899999999999999984   889999999999999     88887653                  


Q ss_pred             hcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEEEEecC
Q 026688          191 QISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP  232 (235)
Q Consensus       191 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~k~  232 (235)
                       ...+.++++.+.|..+++..||..++.....-.+++.-+|.
T Consensus       153 -Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~  193 (219)
T PF11968_consen  153 -CVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRKS  193 (219)
T ss_pred             -HhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEeec
Confidence             22456789999999999999999999988877777766654

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.40  E-value=7e-13  Score=96.95  Aligned_cols=149  Identities=19%  Similarity=0.286  Sum_probs=113.1

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      ...++||||+-|....++...+ ..+++-+|.|..|++.++..-..     ...+...+.|-+.+++.++++|+|++..+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp-----~i~~~~~v~DEE~Ldf~ens~DLiisSls  146 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDP-----SIETSYFVGDEEFLDFKENSVDLIISSLS  146 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCC-----ceEEEEEecchhcccccccchhhhhhhhh
Confidence            4689999999999999999887 46899999999999999863211     23466788899889999999999999999


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHH-HhHh---hcCCc-eeecCHHHHHHHHHHcCCcee
Q 026688          142 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QNMM---QISGS-YTFLSEREIEDLCRACGLVDF  216 (235)
Q Consensus       142 l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~-~~~~~~~~~~~~l~~~Gf~~~  216 (235)
                      +|+..+....+.+|+..|||+|.++.+....+..   ....-.+. ..+.   ...+| ..+....++..+|..+||...
T Consensus       147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTL---yELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~  223 (325)
T KOG2940|consen  147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTL---YELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSML  223 (325)
T ss_pred             hhhhccCchHHHHHHHhcCCCccchhHHhccccH---HHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence            9999888888999999999999999888776532   21111111 1111   12233 234446899999999999865


Q ss_pred             EEE
Q 026688          217 KCT  219 (235)
Q Consensus       217 ~~~  219 (235)
                      .+.
T Consensus       224 tvD  226 (325)
T KOG2940|consen  224 TVD  226 (325)
T ss_pred             eec
Confidence            443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.39  E-value=7.4e-12  Score=95.44  Aligned_cols=117  Identities=11%  Similarity=0.087  Sum_probs=88.9

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P  127 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~  127 (235)
                      .+.+..++...++++|||+|||+|..+..++... +.++++++|+++..++.|++++...+.  ..++++..+|+.+. +
T Consensus        57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~L~  134 (234)
T PLN02781         57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSALD  134 (234)
T ss_pred             HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHHHH
Confidence            3344444444457899999999999988888764 367999999999999999999988775  45799999999763 1


Q ss_pred             -----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          128 -----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 -----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                           .+.++||+|++...-   ++....+..+.++|+|||.+++....
T Consensus       135 ~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l  180 (234)
T PLN02781        135 QLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTL  180 (234)
T ss_pred             HHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence                 124689999974321   22347789999999999998875543

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.38  E-value=7.9e-12  Score=92.44  Aligned_cols=105  Identities=20%  Similarity=0.286  Sum_probs=82.5

Q ss_pred             eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C--CCCCceeEEEecc
Q 026688           64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHAGA  140 (235)
Q Consensus        64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~i~~~~  140 (235)
                      .+||||||.|.++..+++..|+..++|+|+....+..+.+++...+   ..|+.++++|+... .  ++.+++|.|..++
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F   96 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYINF   96 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence            8999999999999999999999999999999999999999888776   57999999999772 2  4468899999654


Q ss_pred             cccccCCh--------HHHHHHHHHhccCCcEEEEEEec
Q 026688          141 AIHCWSSP--------STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       141 ~l~~~~~~--------~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .--+....        ..++..+.++|+|||.|.+.+-.
T Consensus        97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~  135 (195)
T PF02390_consen   97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV  135 (195)
T ss_dssp             -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred             CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence            44333211        37899999999999999987754

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PLN02366 spermidine synthase

Probab=99.37  E-value=1.2e-11  Score=97.44  Aligned_cols=109  Identities=16%  Similarity=0.181  Sum_probs=83.3

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-CCCCCCeeEEecccccC--CCCCCceeEE
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL--PFASSSIDAV  136 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~--~~~~~~~D~i  136 (235)
                      ..+++||+||||.|..+..++++.+..+|+.+|+++.+++.|++.+...+ ....++++++.+|....  ..+.+.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            34789999999999999999887545689999999999999999886421 11256899999997542  1224689999


Q ss_pred             EecccccccCCh----HHHHHHHHHhccCCcEEEEE
Q 026688          137 HAGAAIHCWSSP----STGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       137 ~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~  168 (235)
                      ++...-.+.+..    ..+++.+++.|+|||.++..
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            986544332221    36899999999999998764

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.36  E-value=7.6e-12  Score=99.48  Aligned_cols=112  Identities=26%  Similarity=0.309  Sum_probs=80.1

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC---C----CCCeeEEecccccCC----CC
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF---P----KENFLLVRADISRLP----FA  129 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~----~~~~~~~~~d~~~~~----~~  129 (235)
                      ++.+|||+|||-|..+.-+.+.. -..++|+|++...++.|+++.......   .    .-...++.+|.....    ++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            57899999999999888888765 358999999999999999998321100   0    013566777775421    22


Q ss_pred             C--CceeEEEecccccccC-Ch---HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          130 S--SSIDAVHAGAAIHCWS-SP---STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       130 ~--~~~D~i~~~~~l~~~~-~~---~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      .  ..||+|-|..++|+.= +.   ..+|+.+.+.|+|||+++.+++..+
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~  190 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD  190 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence            3  5999999999998863 32   4789999999999999999988753

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.36  E-value=1.7e-10  Score=85.37  Aligned_cols=123  Identities=11%  Similarity=0.127  Sum_probs=88.0

Q ss_pred             CCCHHHHHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           44 PGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      |......+.+++.+.. ..+.+|||+|||+|.++..++.++. .+|+++|.++.+++.+++++...+   ..++.+.+.|
T Consensus        35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~---~~~v~~~~~D  110 (199)
T PRK10909         35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLK---AGNARVVNTN  110 (199)
T ss_pred             cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEEch
Confidence            4456666777776542 3467999999999999987655553 599999999999999999988765   2368999999


Q ss_pred             cccC-CCCCCceeEEEecccccccCChHHHHHHHHH--hccCCcEEEEEEec
Q 026688          123 ISRL-PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI  171 (235)
Q Consensus       123 ~~~~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~li~~~~~  171 (235)
                      +.+. +.....||+|+++--+.. .-....++.+..  .|+|++.+++....
T Consensus       111 ~~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        111 ALSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             HHHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            8653 222346999998766431 112345555555  37888888876543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.36  E-value=1.9e-11  Score=106.93  Aligned_cols=107  Identities=18%  Similarity=0.172  Sum_probs=82.8

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEEEecc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAGA  140 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~~  140 (235)
                      +++|||+|||+|.++..+++.+. .+|+++|+|+.+++.|++++..++.. ..+++++++|+.+. ....++||+|++.-
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~-~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLS-GRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC-ccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            68999999999999999998753 37999999999999999999887642 14799999998653 11146899999863


Q ss_pred             ccc-----------ccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          141 AIH-----------CWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       141 ~l~-----------~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      -..           ...+...++..+.++|+|||.+++...
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            211           011224678889999999999987654

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.35  E-value=3.4e-11  Score=98.21  Aligned_cols=123  Identities=16%  Similarity=0.163  Sum_probs=87.8

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .++..+.....+..  +++|||+|||+|.++...+..+ ..+|+++|+|+.+++.+++++..++.. ..+++++++|+.+
T Consensus       207 Dqr~~R~~~~~~~~--g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~-~~~v~~i~~D~~~  282 (396)
T PRK15128        207 DQRDSRLATRRYVE--NKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFK  282 (396)
T ss_pred             hhHHHHHHHHHhcC--CCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CCcEEEEEccHHH
Confidence            34444444444433  6899999999999988766543 358999999999999999999887641 1378999999976


Q ss_pred             CC--C--CCCceeEEEecccccccC---------ChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          126 LP--F--ASSSIDAVHAGAAIHCWS---------SPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       126 ~~--~--~~~~~D~i~~~~~l~~~~---------~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .-  +  ..++||+|+++--...-.         +...++..+.++|+|||.++....+.
T Consensus       283 ~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~  342 (396)
T PRK15128        283 LLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG  342 (396)
T ss_pred             HHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            31  1  245799999874432111         12345667889999999999866543

>PLN02672 methionine S-methyltransferase

Probab=99.35  E-value=5.8e-11  Score=106.36  Aligned_cols=131  Identities=17%  Similarity=0.121  Sum_probs=95.2

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC-------------CCCCeeEEecccccCCC
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-------------PKENFLLVRADISRLPF  128 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~d~~~~~~  128 (235)
                      +.+|||+|||+|..+..+++..+..+++++|+|+.+++.|++++..+++.             ...+++++++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999999887789999999999999999998765321             02368999999976431


Q ss_pred             C-CCceeEEEecccc--------------cccC------------------Ch------HHHHHHHHHhccCCcEEEEEE
Q 026688          129 A-SSSIDAVHAGAAI--------------HCWS------------------SP------STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       129 ~-~~~~D~i~~~~~l--------------~~~~------------------~~------~~~l~~~~~~L~pgG~li~~~  169 (235)
                      . ..+||+|+++--.              .|-+                  +.      .+++.++.+.|+|||.+++..
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            1 1369999997221              1100                  01      367788888999999988765


Q ss_pred             eccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH-HHHHHcCCceeEEE
Q 026688          170 YIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE-DLCRACGLVDFKCT  219 (235)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gf~~~~~~  219 (235)
                      ...                           ..+.+. +++++.||..+.+.
T Consensus       279 G~~---------------------------q~~~v~~~l~~~~gf~~~~~~  302 (1082)
T PLN02672        279 GGR---------------------------PGQAVCERLFERRGFRITKLW  302 (1082)
T ss_pred             Ccc---------------------------HHHHHHHHHHHHCCCCeeEEe
Confidence            432                           224566 57777888765554

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.35  E-value=5.3e-11  Score=99.24  Aligned_cols=114  Identities=20%  Similarity=0.321  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      +.+.+.+.+++...++.+|||+|||+|.++..+++...  +|+|+|+|+.+++.|++++...+   ..++++.++|+.+.
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~---~~~v~~~~~d~~~~  357 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNG---LDNVTFYHANLEED  357 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEeChHHh
Confidence            44556667777766678999999999999999998864  99999999999999999987765   34699999998652


Q ss_pred             ----CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          127 ----PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       127 ----~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                          ++..++||+|+++-.-.-   ....++.+.+ ++|++.++++.
T Consensus       358 l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        358 FTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             hhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence                233467999997432221   1245555555 58888777765

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.32  E-value=7.3e-11  Score=94.13  Aligned_cols=113  Identities=12%  Similarity=0.181  Sum_probs=79.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      +.+.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|++++...+.   .++++.++|+.+...
T Consensus       161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l---~~v~~~~~D~~~~~~  235 (315)
T PRK03522        161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGL---TNVQFQALDSTQFAT  235 (315)
T ss_pred             HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCHHHHHH
Confidence            344445555544568999999999999999998764  999999999999999999887653   479999999977532


Q ss_pred             -CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          129 -ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       129 -~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                       ..+.||+|+++-.-.   .....+.++...++|++.++++.
T Consensus       236 ~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc  274 (315)
T PRK03522        236 AQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSC  274 (315)
T ss_pred             hcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEEC
Confidence             235799999763211   11122333344467766555543

>PHA03412 putative methyltransferase; Provisional

Probab=99.32  E-value=4.4e-11  Score=89.47  Aligned_cols=115  Identities=16%  Similarity=0.132  Sum_probs=83.6

Q ss_pred             ccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC
Q 026688           39 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKEN  115 (235)
Q Consensus        39 ~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~  115 (235)
                      ..+.|.-+......+....  ..+.+|||+|||+|.++..++++.   +..+|+++|+++.+++.|+++.        .+
T Consensus        29 ~~GqFfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~   98 (241)
T PHA03412         29 ELGAFFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PE   98 (241)
T ss_pred             cCCccCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cC
Confidence            3455666777766654322  236799999999999999988753   2468999999999999999763        35


Q ss_pred             eeEEecccccCCCCCCceeEEEecccccccC--C----------hHHHHHHHHHhccCCcE
Q 026688          116 FLLVRADISRLPFASSSIDAVHAGAAIHCWS--S----------PSTGVAEISRVLRPGGV  164 (235)
Q Consensus       116 ~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--~----------~~~~l~~~~~~L~pgG~  164 (235)
                      +.+...|+...++ .++||+||++--+.-..  +          ...++..+.+++++|+.
T Consensus        99 ~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412         99 ATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            7889999976554 46899999985443211  1          23678888887777664

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.31  E-value=5e-11  Score=89.58  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=88.6

Q ss_pred             CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C--CCCCceeEEEec
Q 026688           63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHAG  139 (235)
Q Consensus        63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~i~~~  139 (235)
                      ..+||||||.|.++..++++.|+..++|+|+....+..|.+++...++   .|+.+.+.|+..+ +  ++.++.|-|..+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l---~Nlri~~~DA~~~l~~~~~~~sl~~I~i~  126 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL---KNLRLLCGDAVEVLDYLIPDGSLDKIYIN  126 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC---CcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence            589999999999999999999999999999999999999999988753   3899999999764 1  344599999965


Q ss_pred             ccccccCCh--------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          140 AAIHCWSSP--------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       140 ~~l~~~~~~--------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +.--+....        ..+++.+.+.|+|||.|.+.+-..
T Consensus       127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~  167 (227)
T COG0220         127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE  167 (227)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence            554433322        378999999999999999977543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.30  E-value=4.6e-11  Score=88.75  Aligned_cols=119  Identities=14%  Similarity=0.135  Sum_probs=92.7

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-ccccc
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISR  125 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~  125 (235)
                      +....+..++...++++|||||.+.|..+..++...| +++++.+|++++..+.|++++...+.  ..++.... +|..+
T Consensus        46 e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal~  123 (219)
T COG4122          46 ETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDALD  123 (219)
T ss_pred             hHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHHH
Confidence            3334444444445689999999999999999999887 78999999999999999999999876  45677777 47655


Q ss_pred             C-C-CCCCceeEEEecccccccC-ChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          126 L-P-FASSSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       126 ~-~-~~~~~~D~i~~~~~l~~~~-~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      . . ...++||+|+.    .+-+ +...++..+.++|+|||.+++-....
T Consensus       124 ~l~~~~~~~fDliFI----DadK~~yp~~le~~~~lLr~GGliv~DNvl~  169 (219)
T COG4122         124 VLSRLLDGSFDLVFI----DADKADYPEYLERALPLLRPGGLIVADNVLF  169 (219)
T ss_pred             HHHhccCCCccEEEE----eCChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence            2 2 34589999995    3322 23588999999999999999866544

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.30  E-value=5.7e-11  Score=86.41  Aligned_cols=128  Identities=18%  Similarity=0.137  Sum_probs=81.6

Q ss_pred             CCCHHHHHHHHhh------cCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCee
Q 026688           44 PGPEKEFELMKGY------LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL  117 (235)
Q Consensus        44 ~~~~~~~~~i~~~------~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~  117 (235)
                      +....+.+.+...      .....+.+|||+|||+|-.++.++.......|+..|.++ .++.++.++..+......++.
T Consensus        22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~  100 (173)
T PF10294_consen   22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVS  100 (173)
T ss_dssp             -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------E
T ss_pred             chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccccccc
Confidence            3344455566553      233457899999999999999999884456999999998 999999988876421245677


Q ss_pred             EEeccccc-C---CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          118 LVRADISR-L---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       118 ~~~~d~~~-~---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +...|-.+ .   ......||+|++..+++.-.....+++.+.++++|+|.+++....+
T Consensus       101 v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  101 VRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             CcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            76666433 1   1234689999999999976666789999999999999877776654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=99.30  E-value=1.9e-10  Score=88.15  Aligned_cols=147  Identities=20%  Similarity=0.147  Sum_probs=102.8

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh---cC----------------------------
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ES----------------------------  109 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~----------------------------  109 (235)
                      .+.+||-.|||.|+++..++.++.  .+.|.|.|-.|+-..+-.+..   .+                            
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            357999999999999999999987  999999999886554432211   00                            


Q ss_pred             ------CCCCCCeeEEecccccCCCCC---CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccch
Q 026688          110 ------NFPKENFLLVRADISRLPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP  180 (235)
Q Consensus       110 ------~~~~~~~~~~~~d~~~~~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~  180 (235)
                            .....++....+|+.+.-.+.   ++||+|+..+.+....+.-..++.+.++|||||..+=..|..-+.   .+
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~---~~  210 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHF---EP  210 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccC---CC
Confidence                  111235677778887753333   799999998888877788899999999999999665333322111   10


Q ss_pred             hHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          181 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      ..        ......-.++.+|+..+++..||++++...
T Consensus       211 ~~--------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  211 MS--------IPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CC--------CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            00        000112458899999999999999876653

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.28  E-value=2.1e-11  Score=93.56  Aligned_cols=110  Identities=24%  Similarity=0.393  Sum_probs=86.0

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCC----CeeEEecccccC------CCCC
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE----NFLLVRADISRL------PFAS  130 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~d~~~~------~~~~  130 (235)
                      +...++++|||.|..+..+-+.+. ..++|+||.+-.++.|+++......- ..    .+.|+++|....      ++++
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r-~~~~~f~a~f~~~Dc~~~~l~d~~e~~d  194 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNR-FKKFIFTAVFIAADCFKERLMDLLEFKD  194 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhh-hhcccceeEEEEeccchhHHHHhccCCC
Confidence            378899999999998888877764 58999999999999999988653210 11    367888988642      3344


Q ss_pred             CceeEEEeccccccc-CC---hHHHHHHHHHhccCCcEEEEEEecc
Q 026688          131 SSIDAVHAGAAIHCW-SS---PSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~-~~---~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .+||+|-|.+++|+. .+   ...+|+++.++|+|||+++-+.++.
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds  240 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS  240 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence            559999999988874 32   3578999999999999999888765

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.26  E-value=4.4e-11  Score=88.88  Aligned_cols=108  Identities=13%  Similarity=0.151  Sum_probs=84.7

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C-----CCCC
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----FASS  131 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~  131 (235)
                      ...+++|||||+++|..+..+++..| +++++.+|+++...+.|++.+...+.  ..++++..+|+.+. +     ...+
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~~~~~~  120 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELANDGEEG  120 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHhccCCC
Confidence            33468999999999999999998765 58999999999999999999988765  46899999999752 2     1135


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +||+|+....=   .+....+..+.++|+|||.+++....
T Consensus       121 ~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l  157 (205)
T PF01596_consen  121 QFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL  157 (205)
T ss_dssp             SEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred             ceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence            89999964421   12357788999999999999886544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.26  E-value=2.7e-10  Score=94.89  Aligned_cols=113  Identities=17%  Similarity=0.228  Sum_probs=82.7

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-  126 (235)
                      .+.+.+.+++...++.+|||+|||+|.++..+++...  +|+++|+++.+++.|++++..++   ..+++++.+|+.+. 
T Consensus       279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l  353 (431)
T TIGR00479       279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVL  353 (431)
T ss_pred             HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHH
Confidence            3445566666655678999999999999999998764  89999999999999999988765   35799999998652 


Q ss_pred             ---CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          127 ---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       127 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                         +....+||+|++.-.-.  .-...+++.+.+ ++|++.++++
T Consensus       354 ~~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvs  395 (431)
T TIGR00479       354 PKQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVS  395 (431)
T ss_pred             HHHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEc
Confidence               12245799999643211  112355666554 7888876664

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.26  E-value=1e-10  Score=85.97  Aligned_cols=154  Identities=16%  Similarity=0.151  Sum_probs=108.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      +.+....-.+.+....+.+|||...|-|+.++..++++. ..|+.++.+|..++.|+-+--+.++. ..+++++.+|+.+
T Consensus       119 P~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~-~~~i~iilGD~~e  196 (287)
T COG2521         119 PLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELF-EIAIKIILGDAYE  196 (287)
T ss_pred             cHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCcccc-ccccEEecccHHH
Confidence            344444445566666789999999999999999999874 48999999999999887543333322 2368999999987


Q ss_pred             C--CCCCCceeEEEeccc-ccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecC
Q 026688          126 L--PFASSSIDAVHAGAA-IHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS  200 (235)
Q Consensus       126 ~--~~~~~~~D~i~~~~~-l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (235)
                      .  .+++.+||+|+-.-- |.+...  .+.+.++++|+|+|||.++--..++..                   .....--
T Consensus       197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~-------------------ryrG~d~  257 (287)
T COG2521         197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK-------------------RYRGLDL  257 (287)
T ss_pred             HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc-------------------ccccCCh
Confidence            4  477889999993211 111111  158899999999999999876654321                   0111123


Q ss_pred             HHHHHHHHHHcCCceeEEEe
Q 026688          201 EREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       201 ~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      +..+.+.|+++||++++...
T Consensus       258 ~~gVa~RLr~vGF~~v~~~~  277 (287)
T COG2521         258 PKGVAERLRRVGFEVVKKVR  277 (287)
T ss_pred             hHHHHHHHHhcCceeeeeeh
Confidence            56788899999999766543

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.26  E-value=7.5e-11  Score=86.96  Aligned_cols=108  Identities=15%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             CCCeEEEecCCCchH----HHHHHHc-----CCCceEEEEeCCHHHHHHHHHHh--------------h-----hcC-CC
Q 026688           61 LGGNIIDASCGSGLF----SRIFAKS-----GLFSLVVALDYSENMLKQCYEFV--------------Q-----QES-NF  111 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~----~~~l~~~-----~~~~~v~~~D~s~~~~~~a~~~~--------------~-----~~~-~~  111 (235)
                      .+.+|+..||++|.-    ++.+.+.     ....+++|+|+|+.+++.|++-.              .     ..+ ..
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            568999999999943    3333331     12469999999999999998611              0     000 00


Q ss_pred             C-----CCCeeEEecccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEE
Q 026688          112 P-----KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       112 ~-----~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~  168 (235)
                      .     ..++.|...|+.+.+.+.+.||+|+|..++.+++..  .++++.+.+.|+|||+|++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence            0     135899999998843356899999999999999866  58999999999999999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.25  E-value=1.4e-10  Score=87.28  Aligned_cols=126  Identities=20%  Similarity=0.142  Sum_probs=95.0

Q ss_pred             CCCHHHHHHHHhhcCCC---CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688           44 PGPEKEFELMKGYLKPV---LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  120 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (235)
                      |+.++..+.+.+.+...   .+..|||+|||+|..+..++...+.+.++++|.|+.++..|.++.....+  ..++.+..
T Consensus       128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l--~g~i~v~~  205 (328)
T KOG2904|consen  128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL--SGRIEVIH  205 (328)
T ss_pred             ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh--cCceEEEe
Confidence            56677888888776532   24579999999999999999999999999999999999999999887765  45777776


Q ss_pred             cccccC-----CCCCCceeEEEecccccccCC-------------h-------------HHHHHHHHHhccCCcEEEEEE
Q 026688          121 ADISRL-----PFASSSIDAVHAGAAIHCWSS-------------P-------------STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       121 ~d~~~~-----~~~~~~~D~i~~~~~l~~~~~-------------~-------------~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .+++..     +...+++|+++++--.-.-+|             .             -.++.-+.|+|+|||.+.+..
T Consensus       206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~  285 (328)
T KOG2904|consen  206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL  285 (328)
T ss_pred             cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence            655432     344689999999743211000             0             145667889999999999877


Q ss_pred             ec
Q 026688          170 YI  171 (235)
Q Consensus       170 ~~  171 (235)
                      ..
T Consensus       286 ~~  287 (328)
T KOG2904|consen  286 VE  287 (328)
T ss_pred             cc
Confidence            63

>PLN02476 O-methyltransferase

Probab=99.25  E-value=1.7e-10  Score=89.10  Aligned_cols=116  Identities=16%  Similarity=0.094  Sum_probs=89.0

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C-
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-  127 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-  127 (235)
                      +.+..++...++++|||+|+++|..+..++...+ +.+++.+|.+++..+.|++++...+.  ..++++..+|+.+. + 
T Consensus       108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~L~~  185 (278)
T PLN02476        108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAESLKS  185 (278)
T ss_pred             HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHH
Confidence            3344444445578999999999999999988643 56899999999999999999998876  45899999998652 2 


Q ss_pred             C----CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          128 F----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ~----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +    ..++||+|+....=   .+....++.+.++|+|||.|++....
T Consensus       186 l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL  230 (278)
T PLN02476        186 MIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNVL  230 (278)
T ss_pred             HHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecCc
Confidence            1    13589999964321   12357788999999999999886543

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=2.1e-09  Score=76.94  Aligned_cols=124  Identities=17%  Similarity=0.127  Sum_probs=90.1

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ....+++|+|+|||+|.++...+-.++ ..|+|+|+++++++.++++....    ..++.+.+.|+.+..   ..+|.++
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~~---~~~dtvi  113 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDFR---GKFDTVI  113 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhcC---CccceEE
Confidence            344567899999999999999988886 58999999999999999998873    458999999998864   6788999


Q ss_pred             ecccccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCce
Q 026688          138 AGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  215 (235)
Q Consensus       138 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  215 (235)
                      ++--+....  ....++..+.+..    .++.+.+..                          -+.+.+++..+.+|+.+
T Consensus       114 mNPPFG~~~rhaDr~Fl~~Ale~s----~vVYsiH~a--------------------------~~~~f~~~~~~~~G~~v  163 (198)
T COG2263         114 MNPPFGSQRRHADRPFLLKALEIS----DVVYSIHKA--------------------------GSRDFVEKFAADLGGTV  163 (198)
T ss_pred             ECCCCccccccCCHHHHHHHHHhh----heEEEeecc--------------------------ccHHHHHHHHHhcCCeE
Confidence            875553221  1135666666654    223222221                          15677788888899877


Q ss_pred             eEEE
Q 026688          216 FKCT  219 (235)
Q Consensus       216 ~~~~  219 (235)
                      ....
T Consensus       164 ~~~~  167 (198)
T COG2263         164 THIE  167 (198)
T ss_pred             EEEE
Confidence            6553

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.23  E-value=1.2e-09  Score=86.44  Aligned_cols=101  Identities=13%  Similarity=0.135  Sum_probs=72.9

Q ss_pred             CCCCCHHHHHHHHhhcCC--------CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCC
Q 026688           42 GFPGPEKEFELMKGYLKP--------VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFP  112 (235)
Q Consensus        42 ~~~~~~~~~~~i~~~~~~--------~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~  112 (235)
                      ..|.....+..+.+++..        ....++||||||+|.....++.+.+..+++|+|+++.+++.|++++..+ ++  
T Consensus        87 piP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l--  164 (321)
T PRK11727         87 PIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL--  164 (321)
T ss_pred             CCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC--
Confidence            345555666666666422        2458999999999988888877766779999999999999999999887 44  


Q ss_pred             CCCeeEEe-cccccCC----CCCCceeEEEecccccc
Q 026688          113 KENFLLVR-ADISRLP----FASSSIDAVHAGAAIHC  144 (235)
Q Consensus       113 ~~~~~~~~-~d~~~~~----~~~~~~D~i~~~~~l~~  144 (235)
                      ..++.+.. .|.....    .+.+.||+|+|+--++.
T Consensus       165 ~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~  201 (321)
T PRK11727        165 NGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA  201 (321)
T ss_pred             cCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence            34677754 3332211    23568999999977653

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.22  E-value=6.4e-10  Score=87.34  Aligned_cols=120  Identities=21%  Similarity=0.282  Sum_probs=97.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-ccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~  124 (235)
                      ..++.+.+.++....++..|||.=||||.+++...-.|.  .++|.|++..|++-|+.++...+.   ....+... |+.
T Consensus       182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~i---~~~~~~~~~Da~  256 (347)
T COG1041         182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYGI---EDYPVLKVLDAT  256 (347)
T ss_pred             CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhCc---CceeEEEecccc
Confidence            567778888888888889999999999999999988776  999999999999999999988752   34544444 999


Q ss_pred             cCCCCCCceeEEEeccccccc-----CC----hHHHHHHHHHhccCCcEEEEEEe
Q 026688          125 RLPFASSSIDAVHAGAAIHCW-----SS----PSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~-----~~----~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+|++...+|.|++.--..--     ..    ..++++.+.++|++||++++..+
T Consensus       257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            999887789999986332211     11    14889999999999999998765

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.19  E-value=7.3e-10  Score=81.02  Aligned_cols=116  Identities=20%  Similarity=0.237  Sum_probs=85.8

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCce---------EEEEeCCHHHHHHHHHHhhhcCCCCCC
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQESNFPKE  114 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~---------v~~~D~s~~~~~~a~~~~~~~~~~~~~  114 (235)
                      +-...+...++.+....++..|||.-||+|.+.+..+..+....         ++|.|+++.+++.|++++...+.  ..
T Consensus        11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~--~~   88 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV--ED   88 (179)
T ss_dssp             SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CG
T ss_pred             CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--CC
Confidence            34567778888888887889999999999999998877655545         89999999999999999988765  45


Q ss_pred             CeeEEecccccCCCCCCceeEEEeccccccc-CCh-------HHHHHHHHHhccC
Q 026688          115 NFLLVRADISRLPFASSSIDAVHAGAAIHCW-SSP-------STGVAEISRVLRP  161 (235)
Q Consensus       115 ~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~-~~~-------~~~l~~~~~~L~p  161 (235)
                      .+.+...|+.++++..+.+|.|+++--...- ...       .++++++.+++++
T Consensus        89 ~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   89 YIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             GEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             ceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            6899999999988767899999997554321 111       3678899999999

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.19  E-value=1.1e-09  Score=76.49  Aligned_cols=126  Identities=17%  Similarity=0.240  Sum_probs=104.8

Q ss_pred             ccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCee
Q 026688           39 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFL  117 (235)
Q Consensus        39 ~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~  117 (235)
                      .....|.+..+.+.+.+.+....+.-|||+|.|+|.++..++.++ +...++++|+|++......+..        +.++
T Consensus        26 VGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--------p~~~   97 (194)
T COG3963          26 VGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--------PGVN   97 (194)
T ss_pred             eeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--------CCcc
Confidence            345568888899999999999999999999999999999999885 4568999999999999988874        3466


Q ss_pred             EEecccccCC-----CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEecc
Q 026688          118 LVRADISRLP-----FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       118 ~~~~d~~~~~-----~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ++.+|+..+.     ...+.||.|+|..-+-.++-.  .++++.+...|.+||.++.-..+.
T Consensus        98 ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963          98 IINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             ccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            8888887643     456789999998877777644  488999999999999999877763

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=99.19  E-value=8.3e-11  Score=89.18  Aligned_cols=110  Identities=26%  Similarity=0.376  Sum_probs=86.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      .....++.....  +..++|+|||.|.++.    ..|.+.+.+.|++...+..+++.         .......+|+..+|
T Consensus        34 p~v~qfl~~~~~--gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~---------~~~~~~~ad~l~~p   98 (293)
T KOG1331|consen   34 PMVRQFLDSQPT--GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS---------GGDNVCRADALKLP   98 (293)
T ss_pred             HHHHHHHhccCC--cceeeecccCCcccCc----CCCcceeeecchhhhhccccccC---------CCceeehhhhhcCC
Confidence            333444444444  7899999999997653    22667899999999888888752         12268889999999


Q ss_pred             CCCCceeEEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEecc
Q 026688          128 FASSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +...+||.++...++||+...   ..+++++.++++|||..++..+..
T Consensus        99 ~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen   99 FREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             CCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence            999999999999999999765   489999999999999988766544

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.18  E-value=2.5e-10  Score=89.20  Aligned_cols=89  Identities=15%  Similarity=0.200  Sum_probs=72.7

Q ss_pred             CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      ......+.+.+.+...++.+|||+|||+|.++..++++++  +|+++|+++.+++.+++++.      ..+++++++|+.
T Consensus        26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~   97 (272)
T PRK00274         26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDAL   97 (272)
T ss_pred             CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhh
Confidence            3566778888888877788999999999999999999976  99999999999999988653      247999999998


Q ss_pred             cCCCCCCceeEEEeccc
Q 026688          125 RLPFASSSIDAVHAGAA  141 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~  141 (235)
                      +.+++.-.+|.|+++..
T Consensus        98 ~~~~~~~~~~~vv~NlP  114 (272)
T PRK00274         98 KVDLSELQPLKVVANLP  114 (272)
T ss_pred             cCCHHHcCcceEEEeCC
Confidence            87654222578887654

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.17  E-value=4.1e-10  Score=87.30  Aligned_cols=89  Identities=12%  Similarity=0.209  Sum_probs=74.9

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..+++.+.  +++++|+++.+++.+++++..     ..+++++++|+.+
T Consensus        14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~   86 (258)
T PRK14896         14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALK   86 (258)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEecccc
Confidence            567778888888777789999999999999999999854  899999999999999987754     3479999999988


Q ss_pred             CCCCCCceeEEEeccccc
Q 026688          126 LPFASSSIDAVHAGAAIH  143 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~  143 (235)
                      .+++  .+|.|+++..++
T Consensus        87 ~~~~--~~d~Vv~NlPy~  102 (258)
T PRK14896         87 VDLP--EFNKVVSNLPYQ  102 (258)
T ss_pred             CCch--hceEEEEcCCcc
Confidence            7654  589999876654

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=99.17  E-value=3.2e-10  Score=88.28  Aligned_cols=107  Identities=12%  Similarity=0.119  Sum_probs=78.8

Q ss_pred             CCeEEEecCCCchH----HHHHHHcC----CCceEEEEeCCHHHHHHHHHHh------------------hhc-----C-
Q 026688           62 GGNIIDASCGSGLF----SRIFAKSG----LFSLVVALDYSENMLKQCYEFV------------------QQE-----S-  109 (235)
Q Consensus        62 ~~~vLdiG~G~G~~----~~~l~~~~----~~~~v~~~D~s~~~~~~a~~~~------------------~~~-----~-  109 (235)
                      ..+|+..||.+|.-    ++.+.+..    ...+|+|+|+|+.+++.|++-.                  ...     + 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            47999999999943    33333322    1468999999999999998642                  000     0 


Q ss_pred             --CC--CCCCeeEEecccccCCCC-CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEE
Q 026688          110 --NF--PKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       110 --~~--~~~~~~~~~~d~~~~~~~-~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~  168 (235)
                        ..  -...+.|...|+.+.+++ .+.||+|+|..++.|++..  .++++.+.+.|+|||+|++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence              00  013578999999875432 5789999999999999764  58999999999999988764

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=7.9e-09  Score=73.28  Aligned_cols=131  Identities=21%  Similarity=0.239  Sum_probs=96.4

Q ss_pred             hhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCce
Q 026688           55 GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  133 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (235)
                      ..+....+.-++|||||+|..+..+++. ++++.+.++|++|.+++...+-+..+    ..++..++.|+... +..++.
T Consensus        37 ~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~-l~~~~V  111 (209)
T KOG3191|consen   37 AELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSG-LRNESV  111 (209)
T ss_pred             HHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhh-hccCCc
Confidence            3344444788999999999999988876 56778999999999999888776655    34688899998763 234889


Q ss_pred             eEEEecccccccC-----------------C----hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhc
Q 026688          134 DAVHAGAAIHCWS-----------------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI  192 (235)
Q Consensus       134 D~i~~~~~l~~~~-----------------~----~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (235)
                      |+++.+-..---+                 +    .++++..+-.+|.|.|.+++.....                    
T Consensus       112 DvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~--------------------  171 (209)
T KOG3191|consen  112 DVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA--------------------  171 (209)
T ss_pred             cEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh--------------------
Confidence            9999874321110                 0    1356777778889999999876543                    


Q ss_pred             CCceeecCHHHHHHHHHHcCCcee
Q 026688          193 SGSYTFLSEREIEDLCRACGLVDF  216 (235)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~~Gf~~~  216 (235)
                            -.++++..+++..||...
T Consensus       172 ------N~p~ei~k~l~~~g~~~~  189 (209)
T KOG3191|consen  172 ------NKPKEILKILEKKGYGVR  189 (209)
T ss_pred             ------cCHHHHHHHHhhccccee
Confidence                  246788889999999653

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.16  E-value=1e-09  Score=89.54  Aligned_cols=109  Identities=12%  Similarity=0.146  Sum_probs=78.3

Q ss_pred             HHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCC
Q 026688           53 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASS  131 (235)
Q Consensus        53 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~  131 (235)
                      +..++...++.+|||++||+|.++..++..+  .+|+++|+++.+++.|++++...+.   .++++.++|+.+... ...
T Consensus       225 ~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~~~~~  299 (374)
T TIGR02085       225 ARQWVREIPVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFATAQMS  299 (374)
T ss_pred             HHHHHHhcCCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHHhcCC
Confidence            3344443346799999999999999999765  4899999999999999999887653   479999999976321 124


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +||+|+++---..  -...+++.+. .++|++.++++.
T Consensus       300 ~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       300 APELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             CCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence            6999997533211  1135555554 468887777654

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.16  E-value=4.4e-10  Score=88.25  Aligned_cols=92  Identities=11%  Similarity=0.146  Sum_probs=76.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||||||+|.++..+++...  +++++|+|+.+++.+++++...+.  ..+++++.+|+.+
T Consensus        21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~--~~~v~ii~~Dal~   96 (294)
T PTZ00338         21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPL--ASKLEVIEGDALK   96 (294)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCC--CCcEEEEECCHhh
Confidence            456778888888877789999999999999999998865  899999999999999998876432  3579999999987


Q ss_pred             CCCCCCceeEEEeccccc
Q 026688          126 LPFASSSIDAVHAGAAIH  143 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~  143 (235)
                      .++  ..||.|+++...+
T Consensus        97 ~~~--~~~d~VvaNlPY~  112 (294)
T PTZ00338         97 TEF--PYFDVCVANVPYQ  112 (294)
T ss_pred             hcc--cccCEEEecCCcc
Confidence            654  4689988764443

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.14  E-value=9.8e-10  Score=85.27  Aligned_cols=111  Identities=12%  Similarity=0.123  Sum_probs=88.1

Q ss_pred             cCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC--CCCCCCeeEEecccccC-CCCCCce
Q 026688           57 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADISRL-PFASSSI  133 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~  133 (235)
                      .++.+ ++||-||.|.|..+..+.++.+..+++.+|+++.+++.|++.+....  .. ++++++...|..+. .-...+|
T Consensus        73 ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~~~~f  150 (282)
T COG0421          73 AHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDCEEKF  150 (282)
T ss_pred             hCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhCCCcC
Confidence            34444 79999999999999999999888899999999999999999997643  22 47899999998764 2123489


Q ss_pred             eEEEecccccccCC----hHHHHHHHHHhccCCcEEEEEE
Q 026688          134 DAVHAGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       134 D~i~~~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      |+|++...=.--+.    ...+++.+++.|+++|.++...
T Consensus       151 DvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         151 DVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            99997654431111    1589999999999999999873

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.14  E-value=2.1e-09  Score=83.23  Aligned_cols=88  Identities=11%  Similarity=0.175  Sum_probs=72.1

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..++++++  .++++|+++.+++.+++++..     ..++++..+|+.+
T Consensus        14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~   86 (253)
T TIGR00755        14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALK   86 (253)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhc
Confidence            566778888888777789999999999999999999986  799999999999999887643     3478999999988


Q ss_pred             CCCCCCcee---EEEecccc
Q 026688          126 LPFASSSID---AVHAGAAI  142 (235)
Q Consensus       126 ~~~~~~~~D---~i~~~~~l  142 (235)
                      .+++  .+|   .|+++..+
T Consensus        87 ~~~~--~~d~~~~vvsNlPy  104 (253)
T TIGR00755        87 VDLP--DFPKQLKVVSNLPY  104 (253)
T ss_pred             CChh--HcCCcceEEEcCCh
Confidence            7754  466   66665443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.13  E-value=6.1e-10  Score=85.01  Aligned_cols=118  Identities=12%  Similarity=0.064  Sum_probs=89.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ...+.+..++....+++|||||+++|..+..++... ++++++.+|.+++..+.|++.+...+.  ..++++..+|+.+.
T Consensus        66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~  143 (247)
T PLN02589         66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPV  143 (247)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHH
Confidence            333444444444457899999999999999998764 467999999999999999999998876  56899999998663


Q ss_pred             -C-C-----CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          127 -P-F-----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 -~-~-----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       + +     ..++||+|++..-=   .+....+..+.++|+|||.|++-..
T Consensus       144 L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv  191 (247)
T PLN02589        144 LDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_pred             HHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence             2 1     12689999964331   1224678889999999999887543

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.11  E-value=6e-10  Score=87.05  Aligned_cols=104  Identities=16%  Similarity=0.300  Sum_probs=80.3

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      ...++.|||+|||+|.+++..++.|. .+|+++|.|. +.+.|++.+..++.  ...++++.+.+++..+|.++.|+|++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~-ia~~a~~iv~~N~~--~~ii~vi~gkvEdi~LP~eKVDiIvS  133 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASS-IADFARKIVKDNGL--EDVITVIKGKVEDIELPVEKVDIIVS  133 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechH-HHHHHHHHHHhcCc--cceEEEeecceEEEecCccceeEEee
Confidence            34589999999999999999999984 6999999877 56999998888775  44689999999987777889999997


Q ss_pred             ccc---ccccCChHHHHHHHHHhccCCcEEE
Q 026688          139 GAA---IHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       139 ~~~---l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      =+.   +.+-.-.+.+|-.=-+-|+|||.++
T Consensus       134 EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  134 EWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            443   2221112344444456889999887

>PLN02823 spermine synthase

Probab=99.10  E-value=1.4e-09  Score=86.74  Aligned_cols=109  Identities=17%  Similarity=0.199  Sum_probs=82.0

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-CCCCCCeeEEecccccC-CCCCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~  138 (235)
                      .+++||.+|+|.|..+..+++..+..+++.+|+++.+++.|++.+.... ....++++++..|..+. ....++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            3689999999999999999887656689999999999999999876421 11256899999998763 333578999998


Q ss_pred             cccccc--cCC----hHHHHH-HHHHhccCCcEEEEEE
Q 026688          139 GAAIHC--WSS----PSTGVA-EISRVLRPGGVFVGTT  169 (235)
Q Consensus       139 ~~~l~~--~~~----~~~~l~-~~~~~L~pgG~li~~~  169 (235)
                      ...-..  -+.    ...+++ .+++.|+|||.+++..
T Consensus       183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            632110  000    135777 8999999999987643

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.09  E-value=1.6e-09  Score=83.40  Aligned_cols=108  Identities=12%  Similarity=0.137  Sum_probs=80.6

Q ss_pred             CCCeEEEecCCCch----HHHHHHHcCC-----CceEEEEeCCHHHHHHHHHHhhh-----cC-------------CCC-
Q 026688           61 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQ-----ES-------------NFP-  112 (235)
Q Consensus        61 ~~~~vLdiG~G~G~----~~~~l~~~~~-----~~~v~~~D~s~~~~~~a~~~~~~-----~~-------------~~~-  112 (235)
                      .+-+|+..||++|.    +++.+.+..+     ..+|+|+|+|..+++.|+.-.=.     .+             ..+ 
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            36899999999993    3444444443     57999999999999998841100     00             000 


Q ss_pred             -------CCCeeEEecccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEE
Q 026688          113 -------KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       113 -------~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~  168 (235)
                             -..|.|...|+...++..+.||+|+|-.++-+++.+  .++++.++..|+|||+|++.
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                   124788888887655345789999999999999866  58999999999999999984

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.07  E-value=6.9e-09  Score=84.48  Aligned_cols=115  Identities=18%  Similarity=0.159  Sum_probs=85.9

Q ss_pred             HHHHHhhcCCC-CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           50 FELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        50 ~~~i~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ...+.+.+... +..+|||++||+|..+..++......+|+++|+++.+++.+++++..++.   .++.+.+.|+...-.
T Consensus        45 ~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~  121 (382)
T PRK04338         45 SVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLH  121 (382)
T ss_pred             HHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHh
Confidence            33444444322 34689999999999999998765445899999999999999999987653   356788899866321


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ..+.||+|++.-.    ..+..++..+.+.+++||.++++...
T Consensus       122 ~~~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gilyvSAtD  160 (382)
T PRK04338        122 EERKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLCVTATD  160 (382)
T ss_pred             hcCCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence            1457999997531    34567888878889999999998443

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.05  E-value=3.8e-09  Score=78.03  Aligned_cols=109  Identities=21%  Similarity=0.268  Sum_probs=78.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ...++.+.+..  +.+|+|+.||-|.++..+++......|+++|++|..++..++.+..+..  ..++....+|..+...
T Consensus        91 Er~Ri~~~v~~--~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv--~~~i~~~~~D~~~~~~  166 (200)
T PF02475_consen   91 ERRRIANLVKP--GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV--ENRIEVINGDAREFLP  166 (200)
T ss_dssp             HHHHHHTC--T--T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG---
T ss_pred             HHHHHHhcCCc--ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC--CCeEEEEcCCHHHhcC
Confidence            34556665444  8899999999999999999966566899999999999999999998876  4578899999988654


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEE
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                       ...+|.|++...    .....+|..+.+++++||.+-
T Consensus       167 -~~~~drvim~lp----~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  167 -EGKFDRVIMNLP----ESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             -TT-EEEEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred             -ccccCEEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence             688999997432    223467899999999998764

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.04  E-value=4.2e-09  Score=85.12  Aligned_cols=109  Identities=18%  Similarity=0.156  Sum_probs=86.5

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C---CCCCceeEEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P---FASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~---~~~~~~D~i~  137 (235)
                      +++||++-|-||.++.+.+..|. .+|+.||.|...++.|++++..++.. ..++.++++|+.+. .   -...+||+|+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~-~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLD-GDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCC-ccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            78999999999999999998764 49999999999999999999988753 35689999999763 1   2235899999


Q ss_pred             eccccc-c--------cCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          138 AGAAIH-C--------WSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       138 ~~~~l~-~--------~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +.---. -        ..+...++..+.++|+|||.+++.+...
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            752211 0        1122477889999999999999987654

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.04  E-value=2.5e-09  Score=82.84  Aligned_cols=114  Identities=17%  Similarity=0.244  Sum_probs=85.9

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      +.+++....-.++.|||+|||+|.++...++.+. .+|++++.|+ |.+.|++.++.+++  ..+|.++.+.+++..+| 
T Consensus       167 ~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N~~--~~rItVI~GKiEdieLP-  241 (517)
T KOG1500|consen  167 RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASNNL--ADRITVIPGKIEDIELP-  241 (517)
T ss_pred             HHHHhcccccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcCCc--cceEEEccCccccccCc-
Confidence            3445545555689999999999999999999885 5899999865 99999999988765  67899999999998776 


Q ss_pred             CceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEE
Q 026688          131 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~  169 (235)
                      ++.|+||+--.=.-+-+..  ...-..++.|+|.|.++=..
T Consensus       242 Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  242 EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTV  282 (517)
T ss_pred             hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence            7789999642222111221  23346679999999887433

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.04  E-value=9.2e-09  Score=78.98  Aligned_cols=111  Identities=13%  Similarity=0.116  Sum_probs=82.5

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCC-CCCCCeeEEecccccC-CCCCC-ceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRADISRL-PFASS-SIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~-~~D~i~  137 (235)
                      .+++||-||.|.|..+..+.+..+..+++++|+++.+++.|++.+..... ..+++++++..|.... .-..+ +||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            47999999999999999999877567999999999999999998765321 1256899999998653 11224 899999


Q ss_pred             ecccccccCCh----HHHHHHHHHhccCCcEEEEEEec
Q 026688          138 AGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       138 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ....-...+..    ..+++.+++.|+|||.+++....
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~  193 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS  193 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence            75443222221    48899999999999999987643

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.03  E-value=5.6e-09  Score=86.50  Aligned_cols=102  Identities=15%  Similarity=0.258  Sum_probs=74.7

Q ss_pred             CCeEEEecCCCchHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      +..|+|||||+|-++...++.+    ...+|+++|-++.+....++++..+++  ..+|+++.+|+.+...+ .++|+||
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v~lp-ekvDIIV  263 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREVELP-EKVDIIV  263 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCCCCC-CceeEEE
Confidence            5789999999999998777664    346999999999888887777666655  56899999999998765 5899999


Q ss_pred             ec--ccccccCChHHHHHHHHHhccCCcEEE
Q 026688          138 AG--AAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       138 ~~--~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      +=  +++..-.-....|....+.|+|||.++
T Consensus       264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  264 SELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            62  222211122356888899999998876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=99.03  E-value=1.1e-08  Score=78.06  Aligned_cols=148  Identities=20%  Similarity=0.126  Sum_probs=90.4

Q ss_pred             CCCeEEEecCCC--chHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------
Q 026688           61 LGGNIIDASCGS--GLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  127 (235)
Q Consensus        61 ~~~~vLdiG~G~--G~~~~~l~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------  127 (235)
                      .-...||+|||-  ......+++ ..|+++|..+|.+|-.+..++..+....   .....++.+|+.+..          
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~aD~r~p~~iL~~p~~~~  144 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP---RGRTAYVQADLRDPEAILAHPEVRG  144 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC---CccEEEEeCCCCCHHHHhcCHHHHh
Confidence            457899999994  234444444 4788999999999999999999887632   123889999997631          


Q ss_pred             -CCCCceeEEEecccccccCC---hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHH
Q 026688          128 -FASSSIDAVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  203 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (235)
                       +.-...=.+++..++||++|   +..+++.+.+.|.||.+|+++..+.+.   .......+...+.......+..|.++
T Consensus       145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~---~p~~~~~~~~~~~~~~~~~~~Rs~~e  221 (267)
T PF04672_consen  145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG---APERAEALEAVYAQAGSPGRPRSREE  221 (267)
T ss_dssp             C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT---SHHHHHHHHHHHHHCCS----B-HHH
T ss_pred             cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC---CHHHHHHHHHHHHcCCCCceecCHHH
Confidence             11123346778889999865   468999999999999999999987642   11222444555555666788899999


Q ss_pred             HHHHHHHcCCcee
Q 026688          204 IEDLCRACGLVDF  216 (235)
Q Consensus       204 ~~~~l~~~Gf~~~  216 (235)
                      +..+|.  ||+.+
T Consensus       222 i~~~f~--g~elv  232 (267)
T PF04672_consen  222 IAAFFD--GLELV  232 (267)
T ss_dssp             HHHCCT--TSEE-
T ss_pred             HHHHcC--CCccC
Confidence            999988  88754

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.02  E-value=3.2e-09  Score=89.71  Aligned_cols=108  Identities=15%  Similarity=0.144  Sum_probs=86.9

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--CCCCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~i~~  138 (235)
                      ....+||||||.|.++..+++..|+..++|+|++...+..+.++....+   ..|+.+.+.|+..+  -++.+++|.|++
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            3578999999999999999999999999999999999988888876655   45788888887543  256788999997


Q ss_pred             cccccccCCh--------HHHHHHHHHhccCCcEEEEEEec
Q 026688          139 GAAIHCWSSP--------STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       139 ~~~l~~~~~~--------~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ++.--|....        ..+++.+.++|+|||.+.+.+-.
T Consensus       424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            6554443322        37899999999999999987643

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.02  E-value=1.3e-08  Score=75.09  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=85.8

Q ss_pred             CCCHHHHHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           44 PGPEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      |......+.+...+. ...+.++||++||+|.++..++.++. ..|+++|.++.+++.+++++...+.  ..++++.+.|
T Consensus        31 pt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~--~~~~~~~~~D  107 (189)
T TIGR00095        31 PTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS--GEQAEVVRNS  107 (189)
T ss_pred             CchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC--cccEEEEehh
Confidence            444555666666553 23478999999999999999999975 4899999999999999999887653  3468899999


Q ss_pred             cccC-C-C-CC-CceeEEEecccccccCChHHHHHHHHH--hccCCcEEEEEEec
Q 026688          123 ISRL-P-F-AS-SSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI  171 (235)
Q Consensus       123 ~~~~-~-~-~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~li~~~~~  171 (235)
                      +... . . .. ..||+|+..-.+.. ......+..+.+  .|+++|.+++....
T Consensus       108 ~~~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       108 ALRALKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             HHHHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            9542 1 1 12 24788876544431 223444554443  68888877765543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK00536 speE spermidine synthase; Provisional

Probab=99.02  E-value=8.3e-09  Score=79.24  Aligned_cols=99  Identities=13%  Similarity=0.133  Sum_probs=76.6

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .+++||-+|.|.|..+..++++.  .+|+-+|+++.+++.+++.+... +...+++++++.. +.+  ...++||+|++.
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD  146 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL  146 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence            36999999999999999999874  39999999999999999977542 1223567777652 222  123689999976


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ..     .+..+.+.+++.|+|||.++...
T Consensus       147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        147 QE-----PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence            43     33577899999999999998754

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.00  E-value=5.8e-09  Score=81.12  Aligned_cols=126  Identities=17%  Similarity=0.234  Sum_probs=84.9

Q ss_pred             CCCCCHHH-HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688           42 GFPGPEKE-FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  120 (235)
Q Consensus        42 ~~~~~~~~-~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (235)
                      ++..-++. ..++.+...   +++|||+-|-+|.++.+.+..+. .+|+.+|.|..+++.+++++..++.. ..++++++
T Consensus       106 GlFlDqR~nR~~v~~~~~---gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~~~~  180 (286)
T PF10672_consen  106 GLFLDQRENRKWVRKYAK---GKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALNGLD-LDRHRFIQ  180 (286)
T ss_dssp             SS-GGGHHHHHHHHHHCT---TCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHTT-C-CTCEEEEE
T ss_pred             eEcHHHHhhHHHHHHHcC---CCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEe
Confidence            33333444 444444433   78999999999999998887663 47999999999999999999988753 35789999


Q ss_pred             cccccC-C-C-CCCceeEEEecccccc------cCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          121 ADISRL-P-F-ASSSIDAVHAGAAIHC------WSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       121 ~d~~~~-~-~-~~~~~D~i~~~~~l~~------~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .|+.+. . . ..+.||+||+.---.-      ..+...++..+.++|+|||.|+......
T Consensus       181 ~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  181 GDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             S-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             cCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            999762 1 1 2468999998522110      1122467889999999999998776654

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK04148 hypothetical protein; Provisional

Probab=99.00  E-value=1.5e-08  Score=69.42  Aligned_cols=107  Identities=10%  Similarity=0.112  Sum_probs=74.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCch-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      ..+.+.+.+....+.++||||||+|. .+..|.+.+.  .|+++|+++..++.+++.          .++++..|+.+..
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~   71 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPN   71 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCC
Confidence            44556666655556899999999996 8888888776  999999999998888764          3678999998744


Q ss_pred             CC-CCceeEEEecccccccCChHHHHHHHHHhccC-CcEEEEEEeccC
Q 026688          128 FA-SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP-GGVFVGTTYIVD  173 (235)
Q Consensus       128 ~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p-gG~li~~~~~~~  173 (235)
                      +. -+.+|+|.+      +..|..+..-+.++.+. |.-+++.....+
T Consensus        72 ~~~y~~a~liys------irpp~el~~~~~~la~~~~~~~~i~~l~~e  113 (134)
T PRK04148         72 LEIYKNAKLIYS------IRPPRDLQPFILELAKKINVPLIIKPLSGE  113 (134)
T ss_pred             HHHHhcCCEEEE------eCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence            22 256888885      33343444444444443 456777665544

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.00  E-value=2.4e-09  Score=81.75  Aligned_cols=158  Identities=16%  Similarity=0.208  Sum_probs=96.2

Q ss_pred             CCCeEEEecCCCchHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-------------CCCC------------C
Q 026688           61 LGGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPK------------E  114 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-------------~~~~------------~  114 (235)
                      .+.++||||||+-.... .+.+..  .+++..|+.+..++..++.+...+             +.+.            .
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            46799999999854432 233333  389999999988887776554321             0000            0


Q ss_pred             Ce-eEEecccccCC-CCC-----CceeEEEecccccccC-Ch---HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHH
Q 026688          115 NF-LLVRADISRLP-FAS-----SSIDAVHAGAAIHCWS-SP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR  183 (235)
Q Consensus       115 ~~-~~~~~d~~~~~-~~~-----~~~D~i~~~~~l~~~~-~~---~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~  183 (235)
                      .+ .++.+|+.+.+ +..     +.||+|++..+++... +.   ...++++.++|||||.|++.............   
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~---  210 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG---  210 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT---
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC---
Confidence            12 36778887643 222     2599999999998764 33   47899999999999999998876532110000   


Q ss_pred             HHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe------eCcEEEEEEec
Q 026688          184 LLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR------NRGFVMFTATK  231 (235)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~------~~~~~~~~~~k  231 (235)
                              ..-+.-.++.+.+++.|+++||.+.....      .....+++|+|
T Consensus       211 --------~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K  256 (256)
T PF01234_consen  211 --------HKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK  256 (256)
T ss_dssp             --------EEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred             --------EecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence                    00112356889999999999999877763      22345666665

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=5.5e-09  Score=75.79  Aligned_cols=112  Identities=22%  Similarity=0.317  Sum_probs=83.6

Q ss_pred             HHHhhcC--CCCCCeEEEecCCCchHHHHHHHc-C-CCceEEEEeCCHHHHHHHHHHhhhcCC-------CCCCCeeEEe
Q 026688           52 LMKGYLK--PVLGGNIIDASCGSGLFSRIFAKS-G-LFSLVVALDYSENMLKQCYEFVQQESN-------FPKENFLLVR  120 (235)
Q Consensus        52 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~v~~~D~s~~~~~~a~~~~~~~~~-------~~~~~~~~~~  120 (235)
                      .+++++.  ..|+.+.||+|+|+|+++..++.. + +.....|+|.-++.++.+++++...-.       ....++.++.
T Consensus        71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv  150 (237)
T KOG1661|consen   71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV  150 (237)
T ss_pred             HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence            4444444  455899999999999999988864 2 233459999999999999998876431       0023578889


Q ss_pred             cccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          121 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       121 ~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +|......+..+||.|.+....      .+..+++.+.|+|||.+++-.
T Consensus       151 GDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  151 GDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             CCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence            9998765567899999986333      355678999999999999854

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.98  E-value=7.7e-09  Score=83.98  Aligned_cols=112  Identities=14%  Similarity=0.187  Sum_probs=76.5

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      +.+.+.+.+++... +.++||++||+|.++..+++...  +|+++|+++.+++.+++++..++   ..++++.+.|+.+.
T Consensus       193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~---~~~v~~~~~d~~~~  266 (362)
T PRK05031        193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANG---IDNVQIIRMSAEEF  266 (362)
T ss_pred             HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhC---CCcEEEEECCHHHH
Confidence            34555555555432 35799999999999999988765  89999999999999999988765   34799999998662


Q ss_pred             -C-CC--------------CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          127 -P-FA--------------SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       127 -~-~~--------------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                       + +.              ...||+|++.---  ..-..++++.+.+   |++.++++.
T Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC  320 (362)
T PRK05031        267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISC  320 (362)
T ss_pred             HHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEe
Confidence             1 10              1258999953221  0011344455543   666666544

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=4.9e-08  Score=73.69  Aligned_cols=114  Identities=17%  Similarity=0.278  Sum_probs=96.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ...+..|...+...|+.+|||-|.|+|.++.++++. +|...++..|..+.-.+.|.+.+...+.  ..++++...|+..
T Consensus        91 t~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~  168 (314)
T KOG2915|consen   91 TPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCG  168 (314)
T ss_pred             cccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeeccc
Confidence            345678889999999999999999999999999887 6778999999999999999999998876  6789999999987


Q ss_pred             CCCC--CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEE
Q 026688          126 LPFA--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       126 ~~~~--~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      ..+.  +..+|.|+     -.++.|..++..+.++|+.+|.-++
T Consensus       169 ~GF~~ks~~aDaVF-----LDlPaPw~AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  169 SGFLIKSLKADAVF-----LDLPAPWEAIPHAAKILKDEGGRLC  207 (314)
T ss_pred             CCccccccccceEE-----EcCCChhhhhhhhHHHhhhcCceEE
Confidence            6543  46788888     4578888889999999999875443

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.98  E-value=1.1e-08  Score=77.22  Aligned_cols=147  Identities=14%  Similarity=0.077  Sum_probs=81.5

Q ss_pred             HHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe-eEEecccccCC-
Q 026688           51 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRADISRLP-  127 (235)
Q Consensus        51 ~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~~~-  127 (235)
                      ..+++.... ..+.+|||+|||+|.++..+++.+. .+|+++|+++.++....+.        ..++ .+...|+.... 
T Consensus        64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~--------~~~v~~~~~~ni~~~~~  134 (228)
T TIGR00478        64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQ--------DERVKVLERTNIRYVTP  134 (228)
T ss_pred             HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhc--------CCCeeEeecCCcccCCH
Confidence            344444433 3577999999999999999999853 5899999999877652221        2222 23333443221 


Q ss_pred             ----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHH-HHHHhHhhcCCceeecCHH
Q 026688          128 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR-LLRQNMMQISGSYTFLSER  202 (235)
Q Consensus       128 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  202 (235)
                          ..-..+|+++++...        .+..+.++|+| |.+++..-..      ..... .....-.-.....+..-.+
T Consensus       135 ~~~~~d~~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~KPq------FE~~~~~~~~~giv~~~~~~~~~~~  199 (228)
T TIGR00478       135 ADIFPDFATFDVSFISLIS--------ILPELDLLLNP-NDLTLLFKPQ------FEAGREKKNKKGVVRDKEAIALALH  199 (228)
T ss_pred             hHcCCCceeeeEEEeehHh--------HHHHHHHHhCc-CeEEEEcChH------hhhcHhhcCcCCeecCHHHHHHHHH
Confidence                111245655543332        47889999999 7766544211      10000 0000000000011122346


Q ss_pred             HHHHHHHHcCCceeEEEee
Q 026688          203 EIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       203 ~~~~~l~~~Gf~~~~~~~~  221 (235)
                      ++...+.+.||.+......
T Consensus       200 ~~~~~~~~~~~~~~~~~~s  218 (228)
T TIGR00478       200 KVIDKGESPDFQEKKIIFS  218 (228)
T ss_pred             HHHHHHHcCCCeEeeEEEC
Confidence            6677778889988766544

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.94  E-value=5.2e-10  Score=91.30  Aligned_cols=116  Identities=24%  Similarity=0.361  Sum_probs=79.5

Q ss_pred             CCHHHHHHHHhhcCC----CCCCeEEEecCCCchHHHHHHHcCCCceEEEEe-----CCHHHHHHHHHHhhhcCCCCCCC
Q 026688           45 GPEKEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALD-----YSENMLKQCYEFVQQESNFPKEN  115 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D-----~s~~~~~~a~~~~~~~~~~~~~~  115 (235)
                      +....++.|.+.+..    ..-+.+||+|||+|.++..|..+.    |+.+-     ..+..++.|-++    +    ..
T Consensus        97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~----V~t~s~a~~d~~~~qvqfaleR----G----vp  164 (506)
T PF03141_consen   97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN----VTTMSFAPNDEHEAQVQFALER----G----VP  164 (506)
T ss_pred             CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC----ceEEEcccccCCchhhhhhhhc----C----cc
Confidence            344556666666644    234789999999999999999885    33333     334445444432    1    11


Q ss_pred             eeEEecccccCCCCCCceeEEEecccccccCCh-HHHHHHHHHhccCCcEEEEEEecc
Q 026688          116 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       116 ~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~-~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ..+-..-...+|++++.||+|-|..++..+... ..+|-++-|+|+|||+++++.+..
T Consensus       165 a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  165 AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             hhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence            112222345689999999999999887666433 578889999999999999877653

; GO: 0008168 methyltransferase activity

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.94  E-value=5.7e-09  Score=76.37  Aligned_cols=126  Identities=14%  Similarity=0.177  Sum_probs=89.6

Q ss_pred             CCCHHHHHHHHhhcCC--CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           44 PGPEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      |...+..+.+.+.+..  ..+.++||+-||+|.++...+-++. .+|+.+|.++..+...++++...+.  ..++.+.+.
T Consensus        23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~--~~~~~v~~~   99 (183)
T PF03602_consen   23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGL--EDKIRVIKG   99 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEES
T ss_pred             CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCC--Ccceeeecc
Confidence            5567777788777765  3689999999999999999998885 5899999999999999999987654  335888888


Q ss_pred             cccc-CC---CCCCceeEEEecccccccCChHHHHHHHH--HhccCCcEEEEEEecc
Q 026688          122 DISR-LP---FASSSIDAVHAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIV  172 (235)
Q Consensus       122 d~~~-~~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~pgG~li~~~~~~  172 (235)
                      |... +.   ....+||+|++.--...-......+..+.  ..|+++|.+++.....
T Consensus       100 d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  100 DAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             SHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            8643 21   13578999997644432111256677776  7899999888877654

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.94  E-value=5.6e-08  Score=77.06  Aligned_cols=118  Identities=19%  Similarity=0.217  Sum_probs=96.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ......+++....  +.+|||+-+|-|.++..+++.+.- .|+++|++|.+++..++++..++.  ...+..+++|....
T Consensus       176 ~~ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v--~~~v~~i~gD~rev  250 (341)
T COG2520         176 STERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKV--EGRVEPILGDAREV  250 (341)
T ss_pred             hHHHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCc--cceeeEEeccHHHh
Confidence            3444566666665  899999999999999999999863 499999999999999999998875  34588999999887


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ......+|-|++...    .+...++..+.+.+++||.+.+.+...+
T Consensus       251 ~~~~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e  293 (341)
T COG2520         251 APELGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPE  293 (341)
T ss_pred             hhccccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence            644478999997443    3456789999999999999998887654

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=1.5e-08  Score=77.27  Aligned_cols=90  Identities=14%  Similarity=0.183  Sum_probs=76.6

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ....++.|.+.....++.+|||||+|.|.++..+++++.  .|+++|+|+.+++..++....     ..+++++.+|+.+
T Consensus        15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk   87 (259)
T COG0030          15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALK   87 (259)
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhc
Confidence            566788999999888889999999999999999999987  899999999999999998763     4689999999998


Q ss_pred             CCCCCC-ceeEEEecccc
Q 026688          126 LPFASS-SIDAVHAGAAI  142 (235)
Q Consensus       126 ~~~~~~-~~D~i~~~~~l  142 (235)
                      .+++.- .++.|+++.-.
T Consensus        88 ~d~~~l~~~~~vVaNlPY  105 (259)
T COG0030          88 FDFPSLAQPYKVVANLPY  105 (259)
T ss_pred             CcchhhcCCCEEEEcCCC
Confidence            876532 57888876443

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.90  E-value=1.4e-08  Score=81.05  Aligned_cols=131  Identities=16%  Similarity=0.158  Sum_probs=89.0

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-------CCCceEEEEeCCHHHHHHHHHHhhhcCCCCC
Q 026688           41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQESNFPK  113 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~  113 (235)
                      +.+.-|....+.+.+++...++.+|+|.+||+|.++..+.+.       .....++|+|+++.++..|+-++...+.. .
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~-~  104 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID-N  104 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-C
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-c
Confidence            345557888899999998877889999999999999888763       24568999999999999998776544321 2


Q ss_pred             CCeeEEecccccCCCC--CCceeEEEeccccccc--C------C------------h-HHHHHHHHHhccCCcEEEEEEe
Q 026688          114 ENFLLVRADISRLPFA--SSSIDAVHAGAAIHCW--S------S------------P-STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       114 ~~~~~~~~d~~~~~~~--~~~~D~i~~~~~l~~~--~------~------------~-~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ....+...|....+..  ...||+|+++--+...  .      +            . ..++..+.+.|++||.+.+..+
T Consensus       105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            2345788887654432  4789999997433211  0      0            0 2588999999999999988877


Q ss_pred             cc
Q 026688          171 IV  172 (235)
Q Consensus       171 ~~  172 (235)
                      ..
T Consensus       185 ~~  186 (311)
T PF02384_consen  185 NG  186 (311)
T ss_dssp             HH
T ss_pred             ch
Confidence            53

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.90  E-value=1.6e-08  Score=81.87  Aligned_cols=72  Identities=18%  Similarity=0.272  Sum_probs=58.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .+.+.+.+++... +.+|||++||+|.++..+++...  +|+++|+++.+++.+++++..++   ..++.+++.|+.+
T Consensus       185 ~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~---~~~v~~~~~d~~~  256 (353)
T TIGR02143       185 KMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANN---IDNVQIIRMSAEE  256 (353)
T ss_pred             HHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCcEEEEEcCHHH
Confidence            4455556665532 24799999999999999988764  99999999999999999998765   3478999999876

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.90  E-value=5.6e-09  Score=83.86  Aligned_cols=142  Identities=27%  Similarity=0.365  Sum_probs=109.9

Q ss_pred             cccccceecccccCCCCCCHHHHHHHHh-------hcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHH
Q 026688           28 FIYERGWRQNFVWGGFPGPEKEFELMKG-------YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ  100 (235)
Q Consensus        28 ~~~~~~w~~~~~~~~~~~~~~~~~~i~~-------~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~  100 (235)
                      ..|.+.|-..+..+.++......+....       .....+...++|+|||.|.....+.... .+.++|+|.++..+.+
T Consensus        70 dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~  148 (364)
T KOG1269|consen   70 DLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFR  148 (364)
T ss_pred             hhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHH
Confidence            4467778887766666544443332111       1123446689999999999998887654 4689999999988888


Q ss_pred             HHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          101 CYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       101 a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +.........  ..+..+...|+.+.|++++.||.+-+..+..|.++...++.+++++++|||..+..++..
T Consensus       149 ~~~~~~~~~l--~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~  218 (364)
T KOG1269|consen  149 ANELAKKAYL--DNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK  218 (364)
T ss_pred             HHHHHHHHHh--hhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence            8876655443  334556889999999999999999999999999999999999999999999999877655

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.89  E-value=3.8e-08  Score=81.99  Aligned_cols=119  Identities=18%  Similarity=0.161  Sum_probs=89.8

Q ss_pred             HHHhhc--CCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-
Q 026688           52 LMKGYL--KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  127 (235)
Q Consensus        52 ~i~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-  127 (235)
                      .....+  .+.++.+|||+++|+|.-+.+++.... ...+++.|+++.-++..++++...+   ..++.+...|...+. 
T Consensus       102 l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~  178 (470)
T PRK11933        102 LPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGA  178 (470)
T ss_pred             HHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhh
Confidence            334445  667789999999999999999988743 4689999999999999999998876   456788888877542 


Q ss_pred             CCCCceeEEEecc------cccccCC----------------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          128 FASSSIDAVHAGA------AIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       128 ~~~~~~D~i~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      .....||.|++..      ++..-++                ..++|..+.++|+|||.|+.++.+..
T Consensus       179 ~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~  246 (470)
T PRK11933        179 ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN  246 (470)
T ss_pred             hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence            2235799999532      2221111                03678999999999999999988754

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.89  E-value=2e-08  Score=75.81  Aligned_cols=88  Identities=13%  Similarity=0.172  Sum_probs=75.2

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ...++.|.+....+++..|||+|.|||.++..+.+.+.  +|+++++++.|+....++......  ....++..+|+...
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~--~~kLqV~~gD~lK~  119 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPK--SGKLQVLHGDFLKT  119 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCc--cceeeEEecccccC
Confidence            45677888888888899999999999999999999987  999999999999999998876533  45789999999887


Q ss_pred             CCCCCceeEEEecc
Q 026688          127 PFASSSIDAVHAGA  140 (235)
Q Consensus       127 ~~~~~~~D~i~~~~  140 (235)
                      ++  ..||.|+.+.
T Consensus       120 d~--P~fd~cVsNl  131 (315)
T KOG0820|consen  120 DL--PRFDGCVSNL  131 (315)
T ss_pred             CC--cccceeeccC
Confidence            64  3789999853

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.88  E-value=4.9e-08  Score=76.26  Aligned_cols=119  Identities=17%  Similarity=0.083  Sum_probs=77.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      .+..+...+....+.+|||+|||+|..+..+.+..+ ..+++++|.|+.+++.++..+.....  ...... ..++....
T Consensus        21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~-~~~~~~~~   97 (274)
T PF09243_consen   21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEW-RRVLYRDF   97 (274)
T ss_pred             HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchh-hhhhhccc
Confidence            344444444455678999999999988887776543 34799999999999999887655321  111111 11111101


Q ss_pred             CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEecc
Q 026688          128 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .+....|+|++.++|..+++.  ..+++.+.+.+.+  .|+++++.-
T Consensus        98 ~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt  142 (274)
T PF09243_consen   98 LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT  142 (274)
T ss_pred             ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence            112234999999999888773  3566666666665  888888764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.86  E-value=1.5e-08  Score=79.17  Aligned_cols=91  Identities=18%  Similarity=0.218  Sum_probs=73.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ..+++.+++.+...++..+||.+||.|..+..+++..+ .+.|+|+|.|+.+++.+++++..     ..++.+++.|+.+
T Consensus         5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~   79 (296)
T PRK00050          5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSN   79 (296)
T ss_pred             cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHH
Confidence            34567788888877788999999999999999999874 67999999999999999988754     2479999999987


Q ss_pred             CC--CCC--CceeEEEecccc
Q 026688          126 LP--FAS--SSIDAVHAGAAI  142 (235)
Q Consensus       126 ~~--~~~--~~~D~i~~~~~l  142 (235)
                      +.  .+.  .++|.|++...+
T Consensus        80 l~~~l~~~~~~vDgIl~DLGv  100 (296)
T PRK00050         80 LKEVLAEGLGKVDGILLDLGV  100 (296)
T ss_pred             HHHHHHcCCCccCEEEECCCc
Confidence            53  112  279999986543

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=7.6e-08  Score=79.37  Aligned_cols=111  Identities=21%  Similarity=0.304  Sum_probs=85.6

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .+.+.+.+.+++...++.++||+=||.|.++..++++..  +|+|+|+++++++.|+++++.++   ..++.|..+++++
T Consensus       278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~  352 (432)
T COG2265         278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEE  352 (432)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHH
Confidence            345666777888877788999999999999999998765  99999999999999999999887   4569999999988


Q ss_pred             CCCC---CCceeEEEecccccccCCh-----HHHHHHHHHhccCCcEEEEEE
Q 026688          126 LPFA---SSSIDAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       126 ~~~~---~~~~D~i~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ....   ...+|.|+.       +.|     ..+++.+.+ ++|...++++.
T Consensus       353 ~~~~~~~~~~~d~Vvv-------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC  396 (432)
T COG2265         353 FTPAWWEGYKPDVVVV-------DPPRAGADREVLKQLAK-LKPKRIVYVSC  396 (432)
T ss_pred             HhhhccccCCCCEEEE-------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence            6422   247899993       444     245555544 45656666654

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.82  E-value=2.9e-07  Score=68.48  Aligned_cols=122  Identities=11%  Similarity=0.061  Sum_probs=84.6

Q ss_pred             EEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCCCCCceeEEEeccccc
Q 026688           65 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAGAAIH  143 (235)
Q Consensus        65 vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~~~l~  143 (235)
                      |.||||.-|.+...|.+++....++++|+++..++.|++.+...++  ..++++..+|-.+ ++ +.+..|.|+..++=.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG---GGG---EEEEEEE-H
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccC-CCCCCCEEEEecCCH
Confidence            6899999999999999998777899999999999999999998876  5689999999654 33 223378888654432


Q ss_pred             ccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          144 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       144 ~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      .  -...+|......++....+++...+                            ....++++|.++||.++...
T Consensus        78 ~--lI~~ILe~~~~~~~~~~~lILqP~~----------------------------~~~~LR~~L~~~gf~I~~E~  123 (205)
T PF04816_consen   78 E--LIIEILEAGPEKLSSAKRLILQPNT----------------------------HAYELRRWLYENGFEIIDED  123 (205)
T ss_dssp             H--HHHHHHHHTGGGGTT--EEEEEESS-----------------------------HHHHHHHHHHTTEEEEEEE
T ss_pred             H--HHHHHHHhhHHHhccCCeEEEeCCC----------------------------ChHHHHHHHHHCCCEEEEeE
Confidence            1  1235566666666655566653322                            45789999999999876664

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=7.4e-09  Score=71.95  Aligned_cols=128  Identities=17%  Similarity=0.088  Sum_probs=85.9

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      |..+.+.-.++.......+++|||+|.|- |-.+..++...+...|...|-++..++..++....+......++.....+
T Consensus        12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~   91 (201)
T KOG3201|consen   12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL   91 (201)
T ss_pred             ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH
Confidence            44444555556655556679999999995 66666677777788999999999999988876654422112233233333


Q ss_pred             ccc--CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          123 ISR--LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       123 ~~~--~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ...  .......||+|++..++..-.-.....+.+...|+|.|.-++..+.
T Consensus        92 ~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR  142 (201)
T KOG3201|consen   92 IWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR  142 (201)
T ss_pred             HhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCc
Confidence            322  1223458999999988873223357889999999999986665543

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=1.8e-08  Score=68.80  Aligned_cols=101  Identities=17%  Similarity=0.198  Sum_probs=73.9

Q ss_pred             hhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688           55 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  134 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  134 (235)
                      +-.....+++++|+|||.|.++....-.. ...|.|+|++|++++.+++++.+..    .++++.++|+.+..+..+.||
T Consensus        42 ~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqcdildle~~~g~fD  116 (185)
T KOG3420|consen   42 NTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQCDILDLELKGGIFD  116 (185)
T ss_pred             hhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHhh----hhhheeeeeccchhccCCeEe
Confidence            33444568999999999999996655444 3589999999999999999988763    367899999988766678899


Q ss_pred             EEEecccccccCCh--HHHHHHHHHhcc
Q 026688          135 AVHAGAAIHCWSSP--STGVAEISRVLR  160 (235)
Q Consensus       135 ~i~~~~~l~~~~~~--~~~l~~~~~~L~  160 (235)
                      .++.+--+..-..-  .++++....+.+
T Consensus       117 taviNppFGTk~~~aDm~fv~~al~~~~  144 (185)
T KOG3420|consen  117 TAVINPPFGTKKKGADMEFVSAALKVAS  144 (185)
T ss_pred             eEEecCCCCcccccccHHHHHHHHHHHH
Confidence            99987665432111  244555544443

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.78  E-value=1.2e-07  Score=69.20  Aligned_cols=98  Identities=18%  Similarity=0.205  Sum_probs=77.9

Q ss_pred             eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccccc
Q 026688           64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH  143 (235)
Q Consensus        64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~  143 (235)
                      +++|+|+|.|.-++.++=..|+.+++.+|....-+...+......+   ..++++.+..+++ +.....||+|++..+  
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~-~~~~~~fd~v~aRAv--  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG---LSNVEVINGRAEE-PEYRESFDVVTARAV--  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC---CCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence            8999999999999999888899999999999877777666666555   3579999999988 444689999998544  


Q ss_pred             ccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          144 CWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       144 ~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                        .....++.-+...+++||.+++.-
T Consensus       125 --~~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  125 --APLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence              345678899999999999988754

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.75  E-value=8.5e-07  Score=70.36  Aligned_cols=115  Identities=14%  Similarity=0.039  Sum_probs=79.6

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-  126 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-  126 (235)
                      .|.+.+..  +..++|+|||+|.-+..+++..    ....++++|+|.+.++.+.+++..... +...+.-+++|+.+. 
T Consensus        69 ~Ia~~i~~--~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l  145 (319)
T TIGR03439        69 DIAASIPS--GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGL  145 (319)
T ss_pred             HHHHhcCC--CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHH
Confidence            34444443  5689999999998777665542    346799999999999999999872211 122344488888652 


Q ss_pred             ---CC--CCCceeEEEec-ccccccCChH--HHHHHHHH-hccCCcEEEEEE
Q 026688          127 ---PF--ASSSIDAVHAG-AAIHCWSSPS--TGVAEISR-VLRPGGVFVGTT  169 (235)
Q Consensus       127 ---~~--~~~~~D~i~~~-~~l~~~~~~~--~~l~~~~~-~L~pgG~li~~~  169 (235)
                         +-  ......++++. .++.+++..+  .+|+++.+ .|+|||.+++..
T Consensus       146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence               21  12335666655 4788877654  88999999 999999988854

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.74  E-value=2.6e-07  Score=68.31  Aligned_cols=118  Identities=14%  Similarity=0.120  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .+..+.+..++....++++||+|.=+|..+..++...| +++|+++|++++..+.+.+..+..+.  ...++++.++..+
T Consensus        59 ~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv--~~KI~~i~g~a~e  136 (237)
T KOG1663|consen   59 PDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV--DHKITFIEGPALE  136 (237)
T ss_pred             hHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc--cceeeeeecchhh
Confidence            34444444455555578999999999999999888765 57999999999999999888777665  5689999988865


Q ss_pred             C------CCCCCceeEEEecccccccCCh-HHHHHHHHHhccCCcEEEEEEe
Q 026688          126 L------PFASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       126 ~------~~~~~~~D~i~~~~~l~~~~~~-~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .      ....+.||.++.    .|..+. .....++.+++++||.|++...
T Consensus       137 sLd~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~DNv  184 (237)
T KOG1663|consen  137 SLDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVDNV  184 (237)
T ss_pred             hHHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEecc
Confidence            2      134578999995    444322 3778999999999999998653

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.74  E-value=3.7e-07  Score=71.90  Aligned_cols=144  Identities=16%  Similarity=0.157  Sum_probs=102.6

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhh----hcCCCCCCCeeEEecccccC-CCCCCceeEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ----QESNFPKENFLLVRADISRL-PFASSSIDAV  136 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~----~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i  136 (235)
                      ..++|-+|.|.|-.+..+.+.-...+++-+|++|.|++.+++...    ..+...+++++++..|+.+. .-..+.||.|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            578999999999999999876436799999999999999994332    23344467899999999774 2234689999


Q ss_pred             EecccccccCCh----------HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688          137 HAGAAIHCWSSP----------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  206 (235)
Q Consensus       137 ~~~~~l~~~~~~----------~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (235)
                      |..     ++||          ..+...+++.|+++|.+++.....-                   .....+   ..+..
T Consensus       370 IVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y-------------------~tp~vf---w~i~a  422 (508)
T COG4262         370 IVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY-------------------FTPRVF---WRIDA  422 (508)
T ss_pred             EEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc-------------------cCCcee---eeehh
Confidence            953     3443          3678899999999999987654321                   011111   23456


Q ss_pred             HHHHcCCcee----EEEeeCcEEEEEEecC
Q 026688          207 LCRACGLVDF----KCTRNRGFVMFTATKP  232 (235)
Q Consensus       207 ~l~~~Gf~~~----~~~~~~~~~~~~~~k~  232 (235)
                      .++++||.+.    .+..++.+-++++.+-
T Consensus       423 Tik~AG~~~~Pyhv~VPTFGeWGf~l~~~~  452 (508)
T COG4262         423 TIKSAGYRVWPYHVHVPTFGEWGFILAAPG  452 (508)
T ss_pred             HHHhCcceeeeeEEecCcccccceeecccc
Confidence            7789998753    3346777777777754

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=98.73  E-value=2.2e-07  Score=71.56  Aligned_cols=162  Identities=17%  Similarity=0.117  Sum_probs=100.0

Q ss_pred             CHHHHHHHHhhcCC----CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHh---hhcC---------
Q 026688           46 PEKEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV---QQES---------  109 (235)
Q Consensus        46 ~~~~~~~i~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~---------  109 (235)
                      ....++.+..+.+.    ..+-+||-.|||.|+++..++..++  .+-|-+.|--|+-...=.+   ...+         
T Consensus       131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh  208 (369)
T KOG2798|consen  131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH  208 (369)
T ss_pred             hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence            34445555555543    2357899999999999999999887  5555566555443221111   0000         


Q ss_pred             -------------------------CCCCCCeeEEecccccC-C--CCCCceeEEEecccccccCChHHHHHHHHHhccC
Q 026688          110 -------------------------NFPKENFLLVRADISRL-P--FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP  161 (235)
Q Consensus       110 -------------------------~~~~~~~~~~~~d~~~~-~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p  161 (235)
                                               ...........+|+.+. +  -..+.||+|+.++.+....+.-..++.+.++|+|
T Consensus       209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~  288 (369)
T KOG2798|consen  209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKP  288 (369)
T ss_pred             ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccC
Confidence                                     00011233344666553 1  1224799999887777666777899999999999


Q ss_pred             CcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          162 GGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       162 gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      ||+.+=..+..-++......          .....-.++.+++..+....||++++..
T Consensus       289 GGvWiNlGPLlYHF~d~~g~----------~~~~siEls~edl~~v~~~~GF~~~ke~  336 (369)
T KOG2798|consen  289 GGVWINLGPLLYHFEDTHGV----------ENEMSIELSLEDLKRVASHRGFEVEKER  336 (369)
T ss_pred             CcEEEeccceeeeccCCCCC----------cccccccccHHHHHHHHHhcCcEEEEee
Confidence            99888544433211110000          1112345789999999999999987765

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.73  E-value=5.7e-07  Score=65.10  Aligned_cols=125  Identities=18%  Similarity=0.210  Sum_probs=93.6

Q ss_pred             CCCHHHHHHHHhhcCC--CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           44 PGPEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      |...+..+.+++.+..  ..+.++||+-+|+|.++...+-++. ..++.+|.+.......++++...+.  ..+..++..
T Consensus        24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~--~~~~~~~~~  100 (187)
T COG0742          24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGL--EGEARVLRN  100 (187)
T ss_pred             CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCC--ccceEEEee
Confidence            5567788888888876  5789999999999999999998875 5899999999999999999887654  357888888


Q ss_pred             ccccC--CCCC-CceeEEEecccccc-cCChHHHHHH--HHHhccCCcEEEEEEec
Q 026688          122 DISRL--PFAS-SSIDAVHAGAAIHC-WSSPSTGVAE--ISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       122 d~~~~--~~~~-~~~D~i~~~~~l~~-~~~~~~~l~~--~~~~L~pgG~li~~~~~  171 (235)
                      |....  .... +.||+|++.--++. +.+....+..  -...|+|+|.+++....
T Consensus       101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~  156 (187)
T COG0742         101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK  156 (187)
T ss_pred             cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence            88742  1222 25999998665551 1122233333  44679999999987654

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.70  E-value=3.9e-07  Score=73.80  Aligned_cols=74  Identities=26%  Similarity=0.410  Sum_probs=57.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ...+.+.+.+++...+. .|||+-||.|.++..+++...  +|+|+|+++.+++.|++++..++   ..+++|.+.+.++
T Consensus       182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~---i~n~~f~~~~~~~  255 (352)
T PF05958_consen  182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNG---IDNVEFIRGDAED  255 (352)
T ss_dssp             HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHH
T ss_pred             HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcC---CCcceEEEeeccc
Confidence            34556677777876654 899999999999999999876  99999999999999999999876   4689998877654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.69  E-value=7.8e-07  Score=71.21  Aligned_cols=135  Identities=17%  Similarity=0.084  Sum_probs=97.1

Q ss_pred             ccceecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC-------------------------
Q 026688           31 ERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-------------------------   85 (235)
Q Consensus        31 ~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-------------------------   85 (235)
                      ++.||..  .+..|..+.+...|+.+....++..++|.=||+|.+.+..+...++                         
T Consensus       163 kRGyR~~--~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~  240 (381)
T COG0116         163 KRGYRVY--DGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKL  240 (381)
T ss_pred             hcccccc--CCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHH
Confidence            4445533  2344556677778888888877889999999999999988776531                         


Q ss_pred             -------c-------eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccc-cCCh--
Q 026688           86 -------S-------LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC-WSSP--  148 (235)
Q Consensus        86 -------~-------~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~-~~~~--  148 (235)
                             +       .++|+|+++.+++.|+.++...+.  ...|.|.+.|+..++.+.+.+|+|||+--..- +.+.  
T Consensus       241 ~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv--~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~  318 (381)
T COG0116         241 REEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV--GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEAL  318 (381)
T ss_pred             HHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC--CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhh
Confidence                   1       277999999999999999998876  56799999999987644478999999844321 2222  


Q ss_pred             -----HHHHHHHHHhccCCcEEEEEE
Q 026688          149 -----STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       149 -----~~~l~~~~~~L~pgG~li~~~  169 (235)
                           ..+.+.+++.++--+..++++
T Consensus       319 v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         319 VAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHHHHHHHHHHHhcCCceEEEEc
Confidence                 234455666666666666654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.68  E-value=6.8e-07  Score=78.76  Aligned_cols=129  Identities=16%  Similarity=0.044  Sum_probs=90.8

Q ss_pred             CCCCCCHHHHHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcC------------------------------------
Q 026688           41 GGFPGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSG------------------------------------   83 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~------------------------------------   83 (235)
                      ...|..+.+...++..... .++..++|..||+|.+++..+...                                    
T Consensus       169 ~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~  248 (702)
T PRK11783        169 GEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA  248 (702)
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence            3445667778878777665 457899999999999998775421                                    


Q ss_pred             ------CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC--CCceeEEEecccccc-cCC---hHHH
Q 026688           84 ------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAAIHC-WSS---PSTG  151 (235)
Q Consensus        84 ------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~~~~l~~-~~~---~~~~  151 (235)
                            ...+++|+|+++.+++.|++++...+.  ...+.+..+|+.+.+.+  .+++|+|+++--+.. +.+   ...+
T Consensus       249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~--~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~l  326 (702)
T PRK11783        249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGV--AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIAL  326 (702)
T ss_pred             hhcccccCceEEEEECCHHHHHHHHHHHHHcCC--CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHH
Confidence                  113699999999999999999998775  34689999999886533  357999999854422 221   1233


Q ss_pred             HHHHHHhc---cCCcEEEEEEec
Q 026688          152 VAEISRVL---RPGGVFVGTTYI  171 (235)
Q Consensus       152 l~~~~~~L---~pgG~li~~~~~  171 (235)
                      .+.+.+.+   .+|+.+.+.+..
T Consensus       327 Y~~lg~~lk~~~~g~~~~llt~~  349 (702)
T PRK11783        327 YSQLGRRLKQQFGGWNAALFSSS  349 (702)
T ss_pred             HHHHHHHHHHhCCCCeEEEEeCC
Confidence            33333333   488888776654

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.67  E-value=7.2e-08  Score=68.57  Aligned_cols=73  Identities=23%  Similarity=0.271  Sum_probs=55.6

Q ss_pred             CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCc-eeEEEec
Q 026688           63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSS-IDAVHAG  139 (235)
Q Consensus        63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~D~i~~~  139 (235)
                      ..|+|+.||.|..++.+++.+.  .|+++|+++..++.|+.++...+.  ..++.++++|+.+..  ..... +|+|+++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv--~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGV--ADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            3699999999999999999976  999999999999999999998875  568999999998742  22222 8999975

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=1.2e-06  Score=70.97  Aligned_cols=125  Identities=25%  Similarity=0.277  Sum_probs=94.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      ..........+.+.++.+|||+.++.|.=+.++++...+  ..|+++|.++.-+...++++...+   ..++.....|..
T Consensus       142 d~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~  218 (355)
T COG0144         142 DEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDAR  218 (355)
T ss_pred             CHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccc
Confidence            344455566788889999999999999999999888653  457999999999999999998876   456778888876


Q ss_pred             cCC---CCCCceeEEEecc------cccccCCh----------------HHHHHHHHHhccCCcEEEEEEeccCC
Q 026688          125 RLP---FASSSIDAVHAGA------AIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIVDG  174 (235)
Q Consensus       125 ~~~---~~~~~~D~i~~~~------~l~~~~~~----------------~~~l~~~~~~L~pgG~li~~~~~~~~  174 (235)
                      ..+   ....+||.|++..      ++.--++.                .++|..+.++|||||.|+.++.+...
T Consensus       219 ~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~  293 (355)
T COG0144         219 RLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP  293 (355)
T ss_pred             cccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence            543   2223599999742      22111211                26899999999999999999988754

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.65  E-value=4.2e-07  Score=77.73  Aligned_cols=96  Identities=17%  Similarity=0.138  Sum_probs=66.1

Q ss_pred             CCCCCHHHHHHHHhhcCCC-------CCCeEEEecCCCchHHHHHHHcCC--------CceEEEEeCCHHHHHHHHHHhh
Q 026688           42 GFPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQ  106 (235)
Q Consensus        42 ~~~~~~~~~~~i~~~~~~~-------~~~~vLdiG~G~G~~~~~l~~~~~--------~~~v~~~D~s~~~~~~a~~~~~  106 (235)
                      .+.-+....+.+.+.+...       ...+|||.|||+|.++..+++..+        ...++|+|+++..+..++.++.
T Consensus         5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~   84 (524)
T TIGR02987         5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG   84 (524)
T ss_pred             ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence            3445677777777665321       346899999999999998877542        2578999999999999998876


Q ss_pred             hcCCCCCCCeeEEecccccCC-----CCCCceeEEEecc
Q 026688          107 QESNFPKENFLLVRADISRLP-----FASSSIDAVHAGA  140 (235)
Q Consensus       107 ~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~i~~~~  140 (235)
                      ..+   ...+.+.+.|.....     ...+.||+|+.+-
T Consensus        85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP  120 (524)
T TIGR02987        85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNP  120 (524)
T ss_pred             hcC---CCCceeeecccccccccccccccCcccEEEeCC
Confidence            543   123445555543211     1125799999973

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=98.61  E-value=6e-07  Score=67.72  Aligned_cols=153  Identities=12%  Similarity=0.092  Sum_probs=94.6

Q ss_pred             CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .-+...+.++..+..  +.+|+|||||.--++..+....+.+.++|+|++..+++.....+...+    ...++...|+.
T Consensus        91 ~Ld~fY~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~  164 (251)
T PF07091_consen   91 NLDEFYDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLL  164 (251)
T ss_dssp             GHHHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TT
T ss_pred             hHHHHHHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeee
Confidence            344455555554443  789999999999999988888778899999999999999998877653    46778888887


Q ss_pred             cCCCCCCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHH
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER  202 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (235)
                      ..+ +....|+.++.-+++.+....  ..++-+..+=.|  .++++.+...-......               +...-..
T Consensus       165 ~~~-~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL~gR~~g---------------m~~~y~~  226 (251)
T PF07091_consen  165 SDP-PKEPADLALLLKTLPCLERQRRGAGLELLDALRSP--HVVVSFPTRSLGGRNKG---------------MEQTYSA  226 (251)
T ss_dssp             TSH-TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSCES--EEEEEEES-------TT---------------HHHCHHH
T ss_pred             ccC-CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhCCC--eEEEeccccccccCccc---------------cccCHHH
Confidence            754 457899999988888765442  223333333233  77777776531110001               1112235


Q ss_pred             HHHHHHHHcCCceeEEEeeC
Q 026688          203 EIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       203 ~~~~~l~~~Gf~~~~~~~~~  222 (235)
                      +++.++...|+. ++...++
T Consensus       227 ~fe~~~~~~~~~-~~~~~~~  245 (251)
T PF07091_consen  227 WFEALAAERGWI-VDRLTFG  245 (251)
T ss_dssp             HHHHHCCTTCEE-EEEEEET
T ss_pred             HHHHhcccCCce-eeeeecc
Confidence            677777777777 4444444

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.61  E-value=2.3e-08  Score=72.41  Aligned_cols=111  Identities=17%  Similarity=0.119  Sum_probs=81.7

Q ss_pred             CHHHHHHHHhhcCC---CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           46 PEKEFELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        46 ~~~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      +++..++++..-.+   ..+.++||+|+|.|..+..++....  +|++.+.|..|..+.+++          +.++  ..
T Consensus        94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynV--l~  159 (288)
T KOG3987|consen   94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNV--LT  159 (288)
T ss_pred             cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCce--ee
Confidence            45555555544322   2358999999999999999988765  899999999998887753          1112  12


Q ss_pred             cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccC-CcEEEEEEe
Q 026688          123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP-GGVFVGTTY  170 (235)
Q Consensus       123 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p-gG~li~~~~  170 (235)
                      ..+..-.+-+||+|.|...+.-..+|-+.|+.+..+|+| +|.+++.-.
T Consensus       160 ~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV  208 (288)
T KOG3987|consen  160 EIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV  208 (288)
T ss_pred             ehhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence            222211234799999999998888999999999999999 888877544

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.60  E-value=2.5e-07  Score=68.86  Aligned_cols=119  Identities=15%  Similarity=0.114  Sum_probs=71.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhh-------hcCCCCCCCeeEE
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------QESNFPKENFLLV  119 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~-------~~~~~~~~~~~~~  119 (235)
                      ...+..+++.++..++...+|+|||.|......+-..+..+.+|+|+.+...+.|+....       ..+.. ..++++.
T Consensus        28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~-~~~v~l~  106 (205)
T PF08123_consen   28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR-PGKVELI  106 (205)
T ss_dssp             HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc-cccceee
Confidence            345567777788888999999999999998877766544569999999988777764332       22221 3467888


Q ss_pred             ecccccCCCC---CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEE
Q 026688          120 RADISRLPFA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       120 ~~d~~~~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      .+|+.+.+..   -...|+|+++..+.. ++....|.+....||+|..++-
T Consensus       107 ~gdfl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  107 HGDFLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             CS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             ccCccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence            8998764311   135799999877642 2234556777788999877664

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=1.7e-06  Score=63.55  Aligned_cols=100  Identities=23%  Similarity=0.306  Sum_probs=72.4

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------CCC
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS  130 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~  130 (235)
                      .++.+|+|+|+-+|.+++.+++.. +...|+++|+.|-         .     +.+++.++.+|+...+        +..
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~-----~~~~V~~iq~d~~~~~~~~~l~~~l~~  109 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------K-----PIPGVIFLQGDITDEDTLEKLLEALGG  109 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------c-----cCCCceEEeeeccCccHHHHHHHHcCC
Confidence            347999999999999999888874 3446999999772         1     1456899999997643        333


Q ss_pred             CceeEEEecccc--------cccCCh---HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          131 SSIDAVHAGAAI--------HCWSSP---STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       131 ~~~D~i~~~~~l--------~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ..+|+|++...-        +|....   ..++.-+..+|+|||.+++-.+-..
T Consensus       110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~  163 (205)
T COG0293         110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE  163 (205)
T ss_pred             CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence            457999975332        222111   3567778889999999999887653

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.58  E-value=2.6e-06  Score=63.48  Aligned_cols=140  Identities=16%  Similarity=0.053  Sum_probs=96.4

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCc-eeEEEecc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS-IDAVHAGA  140 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~D~i~~~~  140 (235)
                      +.+++|||+|.|.=+..++=..|+.+|+-+|....-+...+......+   ..++++++.-+++... ... ||+|++..
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---L~nv~i~~~RaE~~~~-~~~~~D~vtsRA  143 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---LENVEIVHGRAEEFGQ-EKKQYDVVTSRA  143 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---CCCeEEehhhHhhccc-ccccCcEEEeeh
Confidence            589999999999999998877888899999998766666665555544   4579999999988652 123 99999754


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      +-    +...+..-+...+++||.++..-...-        .                -...+.+......|+.+.++..
T Consensus       144 va----~L~~l~e~~~pllk~~g~~~~~k~~~~--------~----------------~e~~e~~~a~~~~~~~~~~~~~  195 (215)
T COG0357         144 VA----SLNVLLELCLPLLKVGGGFLAYKGLAG--------K----------------DELPEAEKAILPLGGQVEKVFS  195 (215)
T ss_pred             cc----chHHHHHHHHHhcccCCcchhhhHHhh--------h----------------hhHHHHHHHHHhhcCcEEEEEE
Confidence            33    345667889999999988764221110        0                0224566667777887766652


Q ss_pred             e------CcEEEEEEecCC
Q 026688          221 N------RGFVMFTATKPS  233 (235)
Q Consensus       221 ~------~~~~~~~~~k~~  233 (235)
                      .      +...+++.+|.+
T Consensus       196 ~~~p~~~~~r~l~ii~~~k  214 (215)
T COG0357         196 LTVPELDGERHLVIIRKRK  214 (215)
T ss_pred             eecCCCCCceEEEEEeccC
Confidence            2      224566666543

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.57  E-value=1.4e-07  Score=69.41  Aligned_cols=98  Identities=21%  Similarity=0.316  Sum_probs=63.8

Q ss_pred             CCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------CC--
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA--  129 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~--  129 (235)
                      .+.++||+||++|.++..+.++. +...|+|+|+.+.         ..     ...+.+.++|+.+..        +.  
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~-----~~~~~~i~~d~~~~~~~~~i~~~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP-----LQNVSFIQGDITNPENIKDIRKLLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS------TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc-----ccceeeeecccchhhHHHhhhhhcccc
Confidence            45899999999999999999987 4579999999875         00     234555556654311        11  


Q ss_pred             CCceeEEEecccccccCC----h-------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          130 SSSIDAVHAGAAIHCWSS----P-------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~----~-------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ...+|+|++........+    .       ...+.-+...|+|||.+++..+..
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~  142 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG  142 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence            268999999874433222    1       244556678899999999877653

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.57  E-value=6.9e-07  Score=69.53  Aligned_cols=106  Identities=15%  Similarity=0.170  Sum_probs=80.7

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.|.+.+...++..|||+|+|+|.++..+++.+.  +++++|+++.+.+..++++..     ..+++++.+|+.+
T Consensus        15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~   87 (262)
T PF00398_consen   15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLK   87 (262)
T ss_dssp             HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTT
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhc
Confidence            567788999988877889999999999999999999984  999999999999999987763     5689999999998


Q ss_pred             CCCCC---CceeEEEecccccccCChHHHHHHHHHhccC
Q 026688          126 LPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRP  161 (235)
Q Consensus       126 ~~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p  161 (235)
                      +..+.   .....|+++... ++  ...++.++...-+.
T Consensus        88 ~~~~~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~  123 (262)
T PF00398_consen   88 WDLYDLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF  123 (262)
T ss_dssp             SCGGGHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred             cccHHhhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence            76543   345566665433 22  23556666654333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.57  E-value=1.3e-06  Score=70.92  Aligned_cols=104  Identities=18%  Similarity=0.157  Sum_probs=82.7

Q ss_pred             CCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-CCCCceeEEEec
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i~~~  139 (235)
                      +.+|||+.||+|..++.++...+ -.+|+++|+++..++.+++++..++   ..++.+.+.|+...- .....||+|.+.
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlD  121 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDID  121 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence            35899999999999999998742 2589999999999999999998765   336888999987642 123579999975


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      - +   ..+..+++.+.+.+++||.|.++....
T Consensus       122 P-f---Gs~~~fld~al~~~~~~glL~vTaTD~  150 (374)
T TIGR00308       122 P-F---GTPAPFVDSAIQASAERGLLLVTATDT  150 (374)
T ss_pred             C-C---CCcHHHHHHHHHhcccCCEEEEEeccc
Confidence            4 2   345678999999999999999985443

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.55  E-value=2.4e-06  Score=61.52  Aligned_cols=103  Identities=30%  Similarity=0.473  Sum_probs=74.0

Q ss_pred             EEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEeccccc--CCCCC-CceeEEEec
Q 026688           65 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR--LPFAS-SSIDAVHAG  139 (235)
Q Consensus        65 vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~--~~~~~-~~~D~i~~~  139 (235)
                      ++|+|||+|... .+.+.... ..++++|+++.++..++..... .   ... +.+...|...  .++.. ..||++ +.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~  125 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A---GLGLVDFVVADALGGVLPFEDSASFDLV-IS  125 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c---CCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence            999999999976 33333322 3788999999999885554322 1   112 5777788765  56655 489999 55


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ....+..+....+.++.+.++|+|.+++......
T Consensus       126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            4444433377899999999999999999887654

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.53  E-value=1.1e-06  Score=69.05  Aligned_cols=93  Identities=13%  Similarity=0.136  Sum_probs=76.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ...+++.+++.+...++..++|.-+|.|..+..+++..+.++|+|+|.++.+++.+++++...    ..++.++..++.+
T Consensus         5 ~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~   80 (305)
T TIGR00006         5 QSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFAN   80 (305)
T ss_pred             cchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHH
Confidence            445678888888888889999999999999999998865689999999999999999988654    3579999999987


Q ss_pred             CC-----CCCCceeEEEecccc
Q 026688          126 LP-----FASSSIDAVHAGAAI  142 (235)
Q Consensus       126 ~~-----~~~~~~D~i~~~~~l  142 (235)
                      +.     ....++|.|++...+
T Consensus        81 l~~~l~~~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        81 FFEHLDELLVTKIDGILVDLGV  102 (305)
T ss_pred             HHHHHHhcCCCcccEEEEeccC
Confidence            43     223579999986543

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.53  E-value=7e-07  Score=64.39  Aligned_cols=115  Identities=18%  Similarity=0.174  Sum_probs=82.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      +.+.+...=..-.+++|||+|+|+|--++..++.+. ..|+..|++|......+-+.+.++    ..+.+...|...   
T Consensus        67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g---  138 (218)
T COG3897          67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG---  138 (218)
T ss_pred             HHHHHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---
Confidence            334444333334579999999999999999888874 589999999988888887777663    467888888765   


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCc-EEEEEEecc
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTYIV  172 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG-~li~~~~~~  172 (235)
                      ....||+++...+++.-+...+.+. +++.|+..| .+++-++.+
T Consensus       139 ~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         139 SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence            3578999999998876555567777 555555544 555544443

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.52  E-value=1.8e-06  Score=60.73  Aligned_cols=101  Identities=20%  Similarity=0.209  Sum_probs=68.7

Q ss_pred             CCCCeEEEecCCCchHHHHHHH-----cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688           60 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  134 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~-----~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  134 (235)
                      .+..+|+|+|||.|+++..++.     . +..+|+++|.++..++.+.++..........++.+...+...... ....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  101 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD  101 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence            5678999999999999999988     4 677999999999999999988876542112456666665544321 35567


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEE
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      +++..+....+.  ..+++.+.+   |+...++
T Consensus       102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~  129 (141)
T PF13679_consen  102 ILVGLHACGDLS--DRALRLFIR---PNARFLV  129 (141)
T ss_pred             EEEEeecccchH--HHHHHHHHH---cCCCEEE
Confidence            777655554332  244555544   5444443

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.52  E-value=1.3e-06  Score=67.47  Aligned_cols=108  Identities=14%  Similarity=0.167  Sum_probs=66.1

Q ss_pred             CCCeEEEecCCCchHHH-HHHHc-CCCceEEEEeCCHHHHHHHHHHhh-hcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSR-IFAKS-GLFSLVVALDYSENMLKQCYEFVQ-QESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~-~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      .+.+|+=||||+=-++. .+++. ++.+.|+++|+++..++.+++... ..++  ..++.|.++|....+..-..||+|+
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L--~~~m~f~~~d~~~~~~dl~~~DvV~  197 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL--SKRMSFITADVLDVTYDLKEYDVVF  197 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES-GGGG-GG----SEEE
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc--cCCeEEEecchhccccccccCCEEE
Confidence            35699999999855444 44443 456789999999999999998776 2233  5689999999987654446899999


Q ss_pred             ecccccc-cCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          138 AGAAIHC-WSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       138 ~~~~l~~-~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ......- -.+..+++.++.+.++||+.+++-..
T Consensus       198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa  231 (276)
T PF03059_consen  198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA  231 (276)
T ss_dssp             E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred             EhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence            7765542 23557999999999999998887643

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.44  E-value=7.5e-05  Score=55.51  Aligned_cols=161  Identities=12%  Similarity=0.124  Sum_probs=96.9

Q ss_pred             CHHHHHHHHhh---cCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           46 PEKEFELMKGY---LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        46 ~~~~~~~i~~~---~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      ..++...+..-   +...++.+||-+|+.+|....++.+- ++...|++++.|+...+..-.....     -.|+--+..
T Consensus        55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~  129 (229)
T PF01269_consen   55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILE  129 (229)
T ss_dssp             T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES
T ss_pred             hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeec
Confidence            45566666544   44567899999999999999999886 5578999999999655444433332     357877888


Q ss_pred             ccccCC---CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceee
Q 026688          122 DISRLP---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF  198 (235)
Q Consensus       122 d~~~~~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (235)
                      |+....   .--+..|+|++.-.  +-.+.+-++.++...||+||.+++......-.....| ..               
T Consensus       130 DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p-~~---------------  191 (229)
T PF01269_consen  130 DARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADP-EE---------------  191 (229)
T ss_dssp             -TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH-HH---------------
T ss_pred             cCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH-HH---------------
Confidence            986521   12358999985322  1122245678888999999999998754311000011 00               


Q ss_pred             cCHHHHHHHHHHcCCceeEEEeeC----cEEEEEEe
Q 026688          199 LSEREIEDLCRACGLVDFKCTRNR----GFVMFTAT  230 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~  230 (235)
                       ...+-.+.|++.||+..+.....    ...+++++
T Consensus       192 -vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~  226 (229)
T PF01269_consen  192 -VFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGR  226 (229)
T ss_dssp             -HHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred             -HHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEE
Confidence             01223456677899987776433    34566655

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.42  E-value=2.7e-06  Score=66.82  Aligned_cols=120  Identities=24%  Similarity=0.254  Sum_probs=91.5

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  127 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--  127 (235)
                      ......+.+.++.+|||+.++.|.-+.++++... ...+++.|+++.-+...++++...+   ..++.....|.....  
T Consensus        75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v~~~~~D~~~~~~~  151 (283)
T PF01189_consen   75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNVIVINADARKLDPK  151 (283)
T ss_dssp             HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHH
T ss_pred             ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceEEEEeecccccccc
Confidence            4445567788899999999999999998888754 5799999999999999999988776   456777777876641  


Q ss_pred             CCCCceeEEEecc------cccccCCh----------------HHHHHHHHHhc----cCCcEEEEEEeccC
Q 026688          128 FASSSIDAVHAGA------AIHCWSSP----------------STGVAEISRVL----RPGGVFVGTTYIVD  173 (235)
Q Consensus       128 ~~~~~~D~i~~~~------~l~~~~~~----------------~~~l~~~~~~L----~pgG~li~~~~~~~  173 (235)
                      .....||.|++..      ++..-++.                .++|+.+.+.+    +|||+++.++.+..
T Consensus       152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~  223 (283)
T PF01189_consen  152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS  223 (283)
T ss_dssp             HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred             ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence            2234699999742      22222221                26799999999    99999999998753

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.37  E-value=9.9e-07  Score=63.14  Aligned_cols=99  Identities=17%  Similarity=0.202  Sum_probs=77.3

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      ...+.|+|+|+|.++...++...  +|++++.+|.....|++++...+   ..++.++.+|+....+  ...|+|+|-..
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicEml  105 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICEML  105 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHHHh
Confidence            47999999999999998887754  99999999999999999876544   6789999999988776  56799997432


Q ss_pred             cccc-CC-hHHHHHHHHHhccCCcEEEE
Q 026688          142 IHCW-SS-PSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       142 l~~~-~~-~~~~l~~~~~~L~pgG~li~  167 (235)
                      -..+ .. .-.+++.+...|+.++.++=
T Consensus       106 DTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         106 DTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence            1111 11 23678888889999888873

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.34  E-value=3.2e-05  Score=57.15  Aligned_cols=138  Identities=14%  Similarity=0.035  Sum_probs=99.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      ..+..+.+++..  +..+.||||.-|++..++.+.++...+++.|+++..++.|.+++...++  ..+++...+|-...=
T Consensus         5 ~RL~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l--~~~i~vr~~dgl~~l   80 (226)
T COG2384           5 KRLTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL--SERIDVRLGDGLAVL   80 (226)
T ss_pred             HHHHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC--cceEEEeccCCcccc
Confidence            345677777776  4559999999999999999999988999999999999999999998876  568888888885422


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  207 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (235)
                      -+++.+|+|+..++=..  -...+|.+-.+.|+.=-.+++. |+                           ....+++++
T Consensus        81 ~~~d~~d~ivIAGMGG~--lI~~ILee~~~~l~~~~rlILQ-Pn---------------------------~~~~~LR~~  130 (226)
T COG2384          81 ELEDEIDVIVIAGMGGT--LIREILEEGKEKLKGVERLILQ-PN---------------------------IHTYELREW  130 (226)
T ss_pred             CccCCcCEEEEeCCcHH--HHHHHHHHhhhhhcCcceEEEC-CC---------------------------CCHHHHHHH
Confidence            23457899986544221  1134566666655532233331 11                           245788999


Q ss_pred             HHHcCCceeEEE
Q 026688          208 CRACGLVDFKCT  219 (235)
Q Consensus       208 l~~~Gf~~~~~~  219 (235)
                      |..++|.+....
T Consensus       131 L~~~~~~I~~E~  142 (226)
T COG2384         131 LSANSYEIKAET  142 (226)
T ss_pred             HHhCCceeeeee
Confidence            999999875554

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.34  E-value=4.1e-06  Score=57.86  Aligned_cols=85  Identities=18%  Similarity=0.259  Sum_probs=59.6

Q ss_pred             eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEeccccc-c-----cCCh---HHHHHHH
Q 026688           87 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIH-C-----WSSP---STGVAEI  155 (235)
Q Consensus        87 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~~~l~-~-----~~~~---~~~l~~~  155 (235)
                      +|+++|+.+++++.+++++...+.  ..+++++..+-+.+.  .+.+.+|+++++...- .     ...+   ...++.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~--~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGL--EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCC--CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence            589999999999999999998765  457999888887764  2334799999875431 1     1222   3789999


Q ss_pred             HHhccCCcEEEEEEeccC
Q 026688          156 SRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       156 ~~~L~pgG~li~~~~~~~  173 (235)
                      .++|+|||.+.++....+
T Consensus        79 l~lL~~gG~i~iv~Y~GH   96 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGH   96 (140)
T ss_dssp             HHHEEEEEEEEEEE--ST
T ss_pred             HHhhccCCEEEEEEeCCC
Confidence            999999999999987754

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=98.32  E-value=9.6e-06  Score=58.52  Aligned_cols=153  Identities=20%  Similarity=0.181  Sum_probs=94.1

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHH----HHHHHH-hhhcCCCCCCCeeEEeccccc
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENML----KQCYEF-VQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~----~~a~~~-~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      +++.+...+++.+|+|+=.|.|.++..+... ++...|+++-..+...    +..+.+ +.....  ..+.+.+..+...
T Consensus        39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~--~aN~e~~~~~~~A  116 (238)
T COG4798          39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV--YANVEVIGKPLVA  116 (238)
T ss_pred             ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh--hhhhhhhCCcccc
Confidence            4455667788999999999999999988876 5666777765543211    101100 000000  2234444444444


Q ss_pred             CCCCCCceeEEEeccccccc-------CChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceee
Q 026688          126 LPFASSSIDAVHAGAAIHCW-------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF  198 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (235)
                      +. +.+..|+++.....|.+       ....++...+.+.|||||.+++.++..........            ......
T Consensus       117 ~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------------t~~~~r  183 (238)
T COG4798         117 LG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------------TITLHR  183 (238)
T ss_pred             cC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------------hhhhcc
Confidence            44 34666777754333222       22358899999999999999999987653222111            112345


Q ss_pred             cCHHHHHHHHHHcCCceeEEE
Q 026688          199 LSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      .+...+.+..+.+||+..-..
T Consensus       184 i~~a~V~a~veaaGFkl~aeS  204 (238)
T COG4798         184 IDPAVVIAEVEAAGFKLEAES  204 (238)
T ss_pred             cChHHHHHHHHhhcceeeeee
Confidence            778888999999999865443

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=0.00036  Score=50.96  Aligned_cols=159  Identities=11%  Similarity=0.090  Sum_probs=103.6

Q ss_pred             CHHHHHHHHhh---cCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           46 PEKEFELMKGY---LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        46 ~~~~~~~i~~~---~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      ...+...|+.-   ++..++.+||-+|+.+|....++.+-.....+++++.|+......-.....     -+|+--+..|
T Consensus        58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~D  132 (231)
T COG1889          58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILED  132 (231)
T ss_pred             hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecc
Confidence            45566666554   345678999999999999999999886677999999998776665554443     3467778888


Q ss_pred             cccCC---CCCCceeEEEecccccccCChH---HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCce
Q 026688          123 ISRLP---FASSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY  196 (235)
Q Consensus       123 ~~~~~---~~~~~~D~i~~~~~l~~~~~~~---~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (235)
                      +....   .-.+..|+|+     ..+.+|.   -+..++...|++||.++++.-...-..+..| ..-            
T Consensus       133 A~~P~~Y~~~Ve~VDviy-----~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp-~~v------------  194 (231)
T COG1889         133 ARKPEKYRHLVEKVDVIY-----QDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP-EEV------------  194 (231)
T ss_pred             cCCcHHhhhhcccccEEE-----EecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH-HHH------------
Confidence            86521   1235688887     4455553   4677889999999988887655421111111 000            


Q ss_pred             eecCHHHHHHHHHHcCCceeEEEeeC----cEEEEEEec
Q 026688          197 TFLSEREIEDLCRACGLVDFKCTRNR----GFVMFTATK  231 (235)
Q Consensus       197 ~~~~~~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~k  231 (235)
                          ..+-...|++.||++.+.....    ...+++++.
T Consensus       195 ----f~~ev~kL~~~~f~i~e~~~LePye~DH~~i~~~~  229 (231)
T COG1889         195 ----FKDEVEKLEEGGFEILEVVDLEPYEKDHALIVAKY  229 (231)
T ss_pred             ----HHHHHHHHHhcCceeeEEeccCCcccceEEEEEee
Confidence                1222345678899987776433    335555543

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.29  E-value=9.1e-06  Score=59.59  Aligned_cols=113  Identities=15%  Similarity=0.289  Sum_probs=82.2

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--C
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--P  127 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~  127 (235)
                      ++...+.+. .++.+||+||.|.|.....+.++-| .+-+.++..|..+++.+..--..    ..++....+--++.  .
T Consensus        91 Mha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e----k~nViil~g~WeDvl~~  164 (271)
T KOG1709|consen   91 MHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE----KENVIILEGRWEDVLNT  164 (271)
T ss_pred             HHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc----ccceEEEecchHhhhcc
Confidence            344444444 4489999999999988888877765 46778999999998887643221    33555555444332  3


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      ++++.||-|.....-++..+...+.+.+.++|||+|.+-+-
T Consensus       165 L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  165 LPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             ccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            56788999998776677777778889999999999988653

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.25  E-value=5.5e-06  Score=60.13  Aligned_cols=109  Identities=17%  Similarity=0.234  Sum_probs=74.5

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCC----CCCeeEEecccccCCCCCCceeEEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP----KENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      .-.+.|||||.|.++..+...+|+..+.|++|.-..-+..++++......+    ..++.+...+....-  .+-|..-.
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~kgq  138 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEKGQ  138 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhhcc
Confidence            457999999999999999999999999999999989998888886543111    234555555544321  12222222


Q ss_pred             ecccccccCChH-------------HHHHHHHHhccCCcEEEEEEecc
Q 026688          138 AGAAIHCWSSPS-------------TGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       138 ~~~~l~~~~~~~-------------~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +.-.++.+++|.             ..+.+..=+|++||.++..+-..
T Consensus       139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~  186 (249)
T KOG3115|consen  139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK  186 (249)
T ss_pred             cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence            333334455542             46778888999999998766543

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.24  E-value=2.3e-05  Score=64.48  Aligned_cols=103  Identities=26%  Similarity=0.418  Sum_probs=86.0

Q ss_pred             CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccc
Q 026688           63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI  142 (235)
Q Consensus        63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l  142 (235)
                      -++|.+|||.-.++..+.+.+ ...++.+|+|+-.++....+....    ..-..+...|...+.+++++||+|+.-..+
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtl  124 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTL  124 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCcc
Confidence            399999999999999999887 358999999999888887765422    345789999999999999999999999988


Q ss_pred             cccCCh----------HHHHHHHHHhccCCcEEEEEEe
Q 026688          143 HCWSSP----------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       143 ~~~~~~----------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +++-..          ...+.++.++++|||+++..+.
T Consensus       125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            876432          2457899999999999888777

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.23  E-value=6.4e-06  Score=57.98  Aligned_cols=59  Identities=24%  Similarity=0.253  Sum_probs=49.9

Q ss_pred             eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ++||+|||.|..+..+++.++..+++++|+++.+.+.+++++..++.   .++.+....+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence            48999999999999999998877899999999999999999877642   357777766654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=9.2e-05  Score=53.25  Aligned_cols=100  Identities=15%  Similarity=0.257  Sum_probs=67.4

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-ccccC--------CCC
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRL--------PFA  129 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~--------~~~  129 (235)
                      .|+.+|||+||.+|.+++-..++. |+..|.|+|+-.         +..     ...+.++++ |+.+.        .++
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p-----~~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP-----PEGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC-----CCCcccccccccCCHHHHHHHHHhCC
Confidence            458999999999999999887774 888999999843         111     334555555 65542        145


Q ss_pred             CCceeEEEecccccc----cCCh-------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          130 SSSIDAVHAGAAIHC----WSSP-------STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~----~~~~-------~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ....|+|++...-.-    +.|-       ..++.-....+.|+|.++.-.+..+
T Consensus       134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence            678899987543211    1111       1344455677889999999888764

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=4.6e-05  Score=57.05  Aligned_cols=150  Identities=15%  Similarity=0.125  Sum_probs=94.1

Q ss_pred             HHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEecccccCC--
Q 026688           52 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISRLP--  127 (235)
Q Consensus        52 ~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~~~--  127 (235)
                      .+++... ..+++.+||+|+.||.++..+.+++. ..|+++|..-..+..--+.        +++ +.+...|+..+.  
T Consensus        69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~  139 (245)
T COG1189          69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPE  139 (245)
T ss_pred             HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHH
Confidence            3333333 34589999999999999999999975 5899999976554432221        334 344556665442  


Q ss_pred             -CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH-hHhhcCCceeecCHHHHH
Q 026688          128 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ-NMMQISGSYTFLSEREIE  205 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  205 (235)
                       +. +..|+++|.-++..   ...+|..+..+++|++-++...-...      ..-..... .-.-.....+..-...+.
T Consensus       140 ~~~-~~~d~~v~DvSFIS---L~~iLp~l~~l~~~~~~~v~LvKPQF------Eagr~~v~kkGvv~d~~~~~~v~~~i~  209 (245)
T COG1189         140 DFT-EKPDLIVIDVSFIS---LKLILPALLLLLKDGGDLVLLVKPQF------EAGREQVGKKGVVRDPKLHAEVLSKIE  209 (245)
T ss_pred             Hcc-cCCCeEEEEeehhh---HHHHHHHHHHhcCCCceEEEEecchh------hhhhhhcCcCceecCcchHHHHHHHHH
Confidence             22 37899998877764   34778899999999998876543221      11000000 000000112223457788


Q ss_pred             HHHHHcCCceeEEEe
Q 026688          206 DLCRACGLVDFKCTR  220 (235)
Q Consensus       206 ~~l~~~Gf~~~~~~~  220 (235)
                      +++.+.||.+.....
T Consensus       210 ~~~~~~g~~~~gl~~  224 (245)
T COG1189         210 NFAKELGFQVKGLIK  224 (245)
T ss_pred             HHHhhcCcEEeeeEc
Confidence            899999999887763

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.20  E-value=3.3e-06  Score=62.05  Aligned_cols=90  Identities=22%  Similarity=0.232  Sum_probs=70.8

Q ss_pred             CHHHHHHHHhhcCCC-CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      ++.....++.....- ....|+|.-||-|..+..++.+++  .|+++|+||.-+.-|++++...|.  ..+++|+++|+.
T Consensus        78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI--~~rItFI~GD~l  153 (263)
T KOG2730|consen   78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGV--PDRITFICGDFL  153 (263)
T ss_pred             cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecC--CceeEEEechHH
Confidence            556666665554321 357899999999999999999988  999999999999999999998887  459999999998


Q ss_pred             cC----CCCCCceeEEEec
Q 026688          125 RL----PFASSSIDAVHAG  139 (235)
Q Consensus       125 ~~----~~~~~~~D~i~~~  139 (235)
                      ++    .+....+|+|+..
T Consensus       154 d~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen  154 DLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             HHHHHHhhhhheeeeeecC
Confidence            74    3444556677753

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.18  E-value=9.4e-07  Score=61.17  Aligned_cols=57  Identities=25%  Similarity=0.290  Sum_probs=45.5

Q ss_pred             eEEecccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       117 ~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      .+++.-....+|.+++.|+|.+-++++|+.-.  ..++++|++.|||||+|-++.+...
T Consensus        32 dlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~   90 (185)
T COG4627          32 DLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK   90 (185)
T ss_pred             chhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence            33333333456778999999999999998754  3789999999999999999988753

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.16  E-value=6.7e-05  Score=58.76  Aligned_cols=98  Identities=13%  Similarity=0.037  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHhhcCCCC-----CCeEEEecCCCchH-HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCee
Q 026688           45 GPEKEFELMKGYLKPVL-----GGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFL  117 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~~~-----~~~vLdiG~G~G~~-~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~  117 (235)
                      .....+.++.+++....     ..++||||+|.... ....++. ...+++|.|+++..++.|++.+..+ ++  ..+|+
T Consensus        81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L--~~~I~  157 (299)
T PF05971_consen   81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNL--ESRIE  157 (299)
T ss_dssp             HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T---TTTEE
T ss_pred             hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhcccc--ccceE
Confidence            33445566666665322     35899999998644 3333332 2459999999999999999999987 55  56787


Q ss_pred             EEeccccc-----CCCCCCceeEEEeccccccc
Q 026688          118 LVRADISR-----LPFASSSIDAVHAGAAIHCW  145 (235)
Q Consensus       118 ~~~~d~~~-----~~~~~~~~D~i~~~~~l~~~  145 (235)
                      +....-..     +..+.+.||+++|+--++.-
T Consensus       158 l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s  190 (299)
T PF05971_consen  158 LRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSS  190 (299)
T ss_dssp             EEE--ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred             EEEcCCccccchhhhcccceeeEEecCCccccC
Confidence            76554322     11234689999998877743

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.14  E-value=3.9e-05  Score=60.82  Aligned_cols=87  Identities=17%  Similarity=0.240  Sum_probs=64.6

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .++.++||+||++|.++..+.+++.  .|++||..+ +-...    ..     .+++.....|......+.+.+|.++|.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L----~~-----~~~V~h~~~d~fr~~p~~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSL----MD-----TGQVEHLRADGFKFRPPRKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhh----hC-----CCCEEEEeccCcccCCCCCCCCEEEEe
Confidence            4689999999999999999999976  999999654 22222    11     567888888876643235789999985


Q ss_pred             ccccccCChHHHHHHHHHhccCC
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPG  162 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pg  162 (235)
                      .+    ..|.++.+.+.+-+..|
T Consensus       278 mv----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        278 MV----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             cc----cCHHHHHHHHHHHHhcC
Confidence            55    34677777777777665

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=98.12  E-value=1.1e-05  Score=63.42  Aligned_cols=91  Identities=16%  Similarity=0.281  Sum_probs=67.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ..+++.+++.+...++...+|.-.|.|..+..+++..+.++++|+|.++.+++.+++++...    ..++.++..++.++
T Consensus         6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l   81 (310)
T PF01795_consen    6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNL   81 (310)
T ss_dssp             -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGH
T ss_pred             cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHH
Confidence            34567788888888899999999999999999999988899999999999999999887754    46899999999875


Q ss_pred             C-----C-CCCceeEEEeccc
Q 026688          127 P-----F-ASSSIDAVHAGAA  141 (235)
Q Consensus       127 ~-----~-~~~~~D~i~~~~~  141 (235)
                      .     . ....+|.|++...
T Consensus        82 ~~~l~~~~~~~~~dgiL~DLG  102 (310)
T PF01795_consen   82 DEYLKELNGINKVDGILFDLG  102 (310)
T ss_dssp             HHHHHHTTTTS-EEEEEEE-S
T ss_pred             HHHHHHccCCCccCEEEEccc
Confidence            3     2 3458999997543

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.11  E-value=1.1e-06  Score=58.58  Aligned_cols=100  Identities=15%  Similarity=0.186  Sum_probs=42.5

Q ss_pred             EEecCCCchHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--CCCCCceeEEEecc
Q 026688           66 IDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGA  140 (235)
Q Consensus        66 LdiG~G~G~~~~~l~~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~i~~~~  140 (235)
                      ||+|+..|..+..+++..+.   .+++++|..+. .+.+++.+...+.  ..+++++.++..+.  .++.+++|+++...
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~--~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL--SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC--CCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            68999999998888775432   26999999985 2233333332222  45799999999653  23347899999755


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .-. .......+..+.+.|+|||.+++.+
T Consensus        78 ~H~-~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   78 DHS-YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CCC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            321 2233467889999999999998754

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=1.5e-05  Score=65.86  Aligned_cols=75  Identities=13%  Similarity=0.231  Sum_probs=64.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .+.+...+-++.....+..+||+-||||.++..+++...  .|+|++++++.++.|+++...++   ..+.+|+++-+++
T Consensus       368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqaE~  442 (534)
T KOG2187|consen  368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQING---ISNATFIVGQAED  442 (534)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcC---ccceeeeecchhh
Confidence            445566777888888889999999999999999998755  99999999999999999988876   5689999996555

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=2.5e-05  Score=53.82  Aligned_cols=121  Identities=13%  Similarity=0.157  Sum_probs=87.7

Q ss_pred             CCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           43 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        43 ~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      .|...+.++.+++++..++.++.+|+|+|.|......++.+ -...+|++++|-.+..++-+.-..+.  ..++.|...|
T Consensus        54 VpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~--~k~trf~Rkd  130 (199)
T KOG4058|consen   54 VPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGC--AKSTRFRRKD  130 (199)
T ss_pred             cCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhc--ccchhhhhhh
Confidence            35677889999999998888999999999999999888876 23789999999999888876655554  5678899999


Q ss_pred             cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       123 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +-+..+  ..|..++.+..-.-+++.   -.++..-+..+..++.--+.
T Consensus       131 lwK~dl--~dy~~vviFgaes~m~dL---e~KL~~E~p~nt~vvacRFP  174 (199)
T KOG4058|consen  131 LWKVDL--RDYRNVVIFGAESVMPDL---EDKLRTELPANTRVVACRFP  174 (199)
T ss_pred             hhhccc--cccceEEEeehHHHHhhh---HHHHHhhCcCCCeEEEEecC
Confidence            987664  345555544333333333   34555566677777654443

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.94  E-value=0.00014  Score=56.44  Aligned_cols=93  Identities=16%  Similarity=0.183  Sum_probs=76.8

Q ss_pred             CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      .-..++..+.+.+...+++..+|.--|.|..+..++.+++. +.++++|.++.+++.|++++...    ..++.++..++
T Consensus         7 HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F   82 (314)
T COG0275           7 HIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNF   82 (314)
T ss_pred             ccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcH
Confidence            34567788889999999999999999999999999999864 56999999999999999998775    45899999988


Q ss_pred             ccCC-----CCCCceeEEEeccc
Q 026688          124 SRLP-----FASSSIDAVHAGAA  141 (235)
Q Consensus       124 ~~~~-----~~~~~~D~i~~~~~  141 (235)
                      .++.     ....++|.|++...
T Consensus        83 ~~l~~~l~~~~i~~vDGiL~DLG  105 (314)
T COG0275          83 ANLAEALKELGIGKVDGILLDLG  105 (314)
T ss_pred             HHHHHHHHhcCCCceeEEEEecc
Confidence            7643     22457888887543

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.86  E-value=6.3e-05  Score=59.32  Aligned_cols=112  Identities=17%  Similarity=0.088  Sum_probs=72.4

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc----ccCCCCCCc
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI----SRLPFASSS  132 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~  132 (235)
                      ..-.+++|||+|.|.|..+.++..-.|+. .++.++.|+..-+..........   .........|+    ..+| +.+.
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~---t~~td~r~s~vt~dRl~lp-~ad~  185 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS---TEKTDWRASDVTEDRLSLP-AADL  185 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc---cccCCCCCCccchhccCCC-ccce
Confidence            44457889999999999998888877753 57778888866665554333211   11222233333    2233 2356


Q ss_pred             eeEEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          133 IDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      |++++...-+-+..+.   ...++.+..++.|||.|+|.+.+-.
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            7777665544444333   3578999999999999999998643

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=97.86  E-value=0.0016  Score=52.46  Aligned_cols=161  Identities=20%  Similarity=0.082  Sum_probs=81.7

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHc----------------CCCceEEEEeCCHHHHHHHHHHhhhcC--CCCCCC--ee
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKS----------------GLFSLVVALDYSENMLKQCYEFVQQES--NFPKEN--FL  117 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~----------------~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~--~~  117 (235)
                      .....-+|+|+||.+|..+..+...                -|..+|+--|+-..--...-+.+....  .....+  +.
T Consensus        13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~   92 (334)
T PF03492_consen   13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS   92 (334)
T ss_dssp             TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred             CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence            3344689999999999998866442                123578888863321111111111100  000112  23


Q ss_pred             EEecccccCCCCCCceeEEEecccccccCCh--------------------------------H-------HHHHHHHHh
Q 026688          118 LVRADISRLPFASSSIDAVHAGAAIHCWSSP--------------------------------S-------TGVAEISRV  158 (235)
Q Consensus       118 ~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--------------------------------~-------~~l~~~~~~  158 (235)
                      -+.+.+..--+|.++.|++++..++|++...                                .       .+|+.=.+-
T Consensus        93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E  172 (334)
T PF03492_consen   93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE  172 (334)
T ss_dssp             EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            3456665544678999999999999987420                                0       223334456


Q ss_pred             ccCCcEEEEEEeccCCCccc----chhHHHHHHhHhh--------------cCCceeecCHHHHHHHHHHcC-CceeEE
Q 026688          159 LRPGGVFVGTTYIVDGPFNL----IPFSRLLRQNMMQ--------------ISGSYTFLSEREIEDLCRACG-LVDFKC  218 (235)
Q Consensus       159 L~pgG~li~~~~~~~~~~~~----~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~G-f~~~~~  218 (235)
                      |+|||.+++.....+.....    ......+...+..              +.-+..+.+.+|++..+++.| |.+.+.
T Consensus       173 Lv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~l  251 (334)
T PF03492_consen  173 LVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKL  251 (334)
T ss_dssp             EEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEE
T ss_pred             eccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEE
Confidence            88999999999888762221    1223333332221              222356788999999999987 554333

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=97.85  E-value=0.0022  Score=49.92  Aligned_cols=161  Identities=9%  Similarity=-0.059  Sum_probs=96.1

Q ss_pred             HhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCC-HHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-----
Q 026688           54 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISR-L-----  126 (235)
Q Consensus        54 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-----  126 (235)
                      .+.+.. ....|+.+|||.-.-...+.. .+  .+..+|++ |++++.-++.+...+..+..+.+++..|+.+ +     
T Consensus        75 ~~~~~~-g~~qvV~LGaGlDTr~~Rl~~-~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~  150 (260)
T TIGR00027        75 LAAVAA-GIRQVVILGAGLDTRAYRLPW-PD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALA  150 (260)
T ss_pred             HHHHhc-CCcEEEEeCCccccHHHhcCC-CC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHH
Confidence            344443 346799999998665555421 22  35566666 5566666666665433334578888889862 1     


Q ss_pred             --CCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh--hcCCceeecC
Q 026688          127 --PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLS  200 (235)
Q Consensus       127 --~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  200 (235)
                        .+.....-++++-+++.+++..  .++++.+.+...||+.+++.......................  ....-...++
T Consensus       151 ~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (260)
T TIGR00027       151 AAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGID  230 (260)
T ss_pred             hCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCC
Confidence              1222345577777888888755  478899988888999998876553111000011111111111  1122234578


Q ss_pred             HHHHHHHHHHcCCceeEE
Q 026688          201 EREIEDLCRACGLVDFKC  218 (235)
Q Consensus       201 ~~~~~~~l~~~Gf~~~~~  218 (235)
                      ++++..+|+..||.....
T Consensus       231 ~~~~~~~l~~~Gw~~~~~  248 (260)
T TIGR00027       231 RADVAEWLAERGWRASEH  248 (260)
T ss_pred             hhhHHHHHHHCCCeeecC
Confidence            899999999999997654

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.81  E-value=0.00047  Score=55.84  Aligned_cols=114  Identities=23%  Similarity=0.238  Sum_probs=85.5

Q ss_pred             hcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---CCCC
Q 026688           56 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASS  131 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~  131 (235)
                      .+.+.++.+|||+.+-+|.-+.+++.. .....|++.|.+..-+...+.++...+   ..+..+...|..+.|   ++. 
T Consensus       236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~-  311 (460)
T KOG1122|consen  236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG-  311 (460)
T ss_pred             ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-
Confidence            346778999999999998777777664 234689999999999999999988876   456777888886654   333 


Q ss_pred             ceeEEEecccccc------------cCC----------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          132 SIDAVHAGAAIHC------------WSS----------PSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       132 ~~D~i~~~~~l~~------------~~~----------~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +||-|++..-..-            ...          ..++|..+.+++++||+|+.++.+..
T Consensus       312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~  375 (460)
T KOG1122|consen  312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT  375 (460)
T ss_pred             ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence            8999996422211            010          13678889999999999999998764

>PRK10742 putative methyltransferase; Provisional

Probab=97.79  E-value=0.00031  Score=53.48  Aligned_cols=92  Identities=14%  Similarity=0.032  Sum_probs=68.0

Q ss_pred             HHHHhhcCCCCCC--eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC----CCC--CCCeeEEecc
Q 026688           51 ELMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NFP--KENFLLVRAD  122 (235)
Q Consensus        51 ~~i~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~--~~~~~~~~~d  122 (235)
                      +.+...+..+++.  +|||.-+|+|..+..++.++.  +|+++|.++.+....+..+....    ...  ..+++++..|
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d  153 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence            4566666655555  899999999999999999875  79999999988888777665520    000  1468888888


Q ss_pred             cccC-CCCCCceeEEEecccccc
Q 026688          123 ISRL-PFASSSIDAVHAGAAIHC  144 (235)
Q Consensus       123 ~~~~-~~~~~~~D~i~~~~~l~~  144 (235)
                      ..+. .-....||+|++.-.+.|
T Consensus       154 a~~~L~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        154 SLTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHHHhhCCCCCcEEEECCCCCC
Confidence            8663 212347999998877765

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.74  E-value=0.00033  Score=51.80  Aligned_cols=107  Identities=13%  Similarity=0.124  Sum_probs=57.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-------CC
Q 026688           61 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------FA  129 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~  129 (235)
                      ++..|+|+|.-.|..+..++..    +..++|+|+|++......  +.+...+.  ..+++++.+|..+..       ..
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~--~~rI~~i~Gds~d~~~~~~v~~~~  107 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPM--SPRITFIQGDSIDPEIVDQVRELA  107 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHHHHTSGSS-
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccc--cCceEEEECCCCCHHHHHHHHHhh
Confidence            3689999999988877766543    367899999996433222  22222232  468999999987632       11


Q ss_pred             -CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          130 -SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       130 -~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                       .....+|+ -.+-|...+..+.|+....+++||+++++.+...
T Consensus       108 ~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~  150 (206)
T PF04989_consen  108 SPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTII  150 (206)
T ss_dssp             ---SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred             ccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEeccc
Confidence             12333444 3444444566788899999999999999877653

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.67  E-value=0.0046  Score=46.82  Aligned_cols=103  Identities=17%  Similarity=0.101  Sum_probs=59.8

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCC-CCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~~D~i~~  138 (235)
                      .+++||-+|=+. -.|.+++-.+...+|+.+|+++.+++..++.....++    +++....|+.+ +|. -.++||+++.
T Consensus        44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~~~~fD~f~T  118 (243)
T PF01861_consen   44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEELRGKFDVFFT  118 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEEE
T ss_pred             cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHHhcCCCEEEe
Confidence            478999999554 3444444445557999999999999999998888753    48999999976 331 2479999996


Q ss_pred             cccccccCChHHHHHHHHHhccCCc-EEEEEE
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPGG-VFVGTT  169 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pgG-~li~~~  169 (235)
                      .-.-- .....-++.+....|+..| ..++..
T Consensus       119 DPPyT-~~G~~LFlsRgi~~Lk~~g~~gy~~~  149 (243)
T PF01861_consen  119 DPPYT-PEGLKLFLSRGIEALKGEGCAGYFGF  149 (243)
T ss_dssp             ---SS-HHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred             CCCCC-HHHHHHHHHHHHHHhCCCCceEEEEE
Confidence            32111 1112467888888998766 544433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.64  E-value=0.0033  Score=51.30  Aligned_cols=158  Identities=14%  Similarity=0.066  Sum_probs=87.2

Q ss_pred             CCeEEEecCCCchHHHHHHHc---------------CCCceEEEEeCCHHHHHHHHHHhhhc--------C-C--CCCCC
Q 026688           62 GGNIIDASCGSGLFSRIFAKS---------------GLFSLVVALDYSENMLKQCYEFVQQE--------S-N--FPKEN  115 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~---------------~~~~~v~~~D~s~~~~~~a~~~~~~~--------~-~--~~~~~  115 (235)
                      ..+|+|+|||+|.++..+...               .|..+|..-|+-..--...-+.+...        . +  .....
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            578999999999877654321               23467777776432222111111110        0 0  00011


Q ss_pred             --eeEEecccccCCCCCCceeEEEecccccccCCh--------------------------------------HHHHHHH
Q 026688          116 --FLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--------------------------------------STGVAEI  155 (235)
Q Consensus       116 --~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--------------------------------------~~~l~~~  155 (235)
                        +.-+.+.+..--+|.++.+++++.+++|++...                                      ..+|+.=
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              111223333333678999999999999987531                                      0233444


Q ss_pred             HHhccCCcEEEEEEeccCCCcccc------hhHHHHHHhH--------------hhcCCceeecCHHHHHHHHHHcC-Cc
Q 026688          156 SRVLRPGGVFVGTTYIVDGPFNLI------PFSRLLRQNM--------------MQISGSYTFLSEREIEDLCRACG-LV  214 (235)
Q Consensus       156 ~~~L~pgG~li~~~~~~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~G-f~  214 (235)
                      .+-|.|||.+++....+.......      .+...+...+              ..+.-+....+.+|+++.+++.| |.
T Consensus       224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~  303 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA  303 (386)
T ss_pred             HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence            556889999999988775321111      1100011111              11233356778999999999998 55


Q ss_pred             eeEEE
Q 026688          215 DFKCT  219 (235)
Q Consensus       215 ~~~~~  219 (235)
                      +.+..
T Consensus       304 I~~le  308 (386)
T PLN02668        304 IDKLE  308 (386)
T ss_pred             eeeeE
Confidence            54444

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.54  E-value=0.0025  Score=54.14  Aligned_cols=130  Identities=20%  Similarity=0.121  Sum_probs=92.8

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC---C-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe
Q 026688           41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---L-FSLVVALDYSENMLKQCYEFVQQESNFPKENF  116 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~  116 (235)
                      +.+..|....+.+.+.+.+.+..+|.|..||+|.+.....+..   . ...++|.|+++.....|+-++-.++...  .+
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~--~~  243 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG--DA  243 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc--cc
Confidence            5667788899999999988777899999999998877555432   1 2679999999999999999887776421  34


Q ss_pred             eEEecccccCCC-----CCCceeEEEeccccc---cc-----------------C----Ch-HHHHHHHHHhccCCcEEE
Q 026688          117 LLVRADISRLPF-----ASSSIDAVHAGAAIH---CW-----------------S----SP-STGVAEISRVLRPGGVFV  166 (235)
Q Consensus       117 ~~~~~d~~~~~~-----~~~~~D~i~~~~~l~---~~-----------------~----~~-~~~l~~~~~~L~pgG~li  166 (235)
                      ....+|....|.     ....||.|+++--+.   +.                 .    .. ..++.++...|+|||...
T Consensus       244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa  323 (489)
T COG0286         244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA  323 (489)
T ss_pred             cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence            555555544332     235699999863331   10                 0    01 478999999999998776


Q ss_pred             EEEecc
Q 026688          167 GTTYIV  172 (235)
Q Consensus       167 ~~~~~~  172 (235)
                      ++.+..
T Consensus       324 ivl~~g  329 (489)
T COG0286         324 IVLPDG  329 (489)
T ss_pred             EEecCC
Confidence            666554

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.49  E-value=0.0043  Score=45.95  Aligned_cols=121  Identities=20%  Similarity=0.151  Sum_probs=68.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC--CceEEEEeCCHHHHHHHHHHhhhcC----------------
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL--FSLVVALDYSENMLKQCYEFVQQES----------------  109 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~----------------  109 (235)
                      ++++.-+.++....+-++.|..||+|+++.-+.-.+.  -..|++-|+++.+++.|++++....                
T Consensus        38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e  117 (246)
T PF11599_consen   38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE  117 (246)
T ss_dssp             HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence            3344444555555678999999999998876654432  2479999999999998887653211                


Q ss_pred             -----------------------CCCCCCeeEEecccccCC-----CCCCceeEEEecccccccCCh---------HHHH
Q 026688          110 -----------------------NFPKENFLLVRADISRLP-----FASSSIDAVHAGAAIHCWSSP---------STGV  152 (235)
Q Consensus       110 -----------------------~~~~~~~~~~~~d~~~~~-----~~~~~~D~i~~~~~l~~~~~~---------~~~l  152 (235)
                                             ..+.....+.+.|+.+..     ......|+|+...-..+..+.         .+++
T Consensus       118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml  197 (246)
T PF11599_consen  118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML  197 (246)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred             HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence                                   101234667888887621     112346999986544333221         4789


Q ss_pred             HHHHHhccCCcEEEEE
Q 026688          153 AEISRVLRPGGVFVGT  168 (235)
Q Consensus       153 ~~~~~~L~pgG~li~~  168 (235)
                      ..+..+|.+++++.++
T Consensus       198 ~~l~~vLp~~sVV~v~  213 (246)
T PF11599_consen  198 NSLAPVLPERSVVAVS  213 (246)
T ss_dssp             HHHHCCS-TT-EEEEE
T ss_pred             HHHHhhCCCCcEEEEe
Confidence            9999999555555553

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.43  E-value=0.0009  Score=51.79  Aligned_cols=110  Identities=11%  Similarity=0.113  Sum_probs=80.8

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEecccccC--CCCCCceeEE
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL--PFASSSIDAV  136 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~--~~~~~~~D~i  136 (235)
                      ..++++|-||.|.|.......++.....+.-+|++...++..++.+... .....+++.+..+|-..+  ..+.+.||+|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi  199 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI  199 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence            3478999999999999998888754568999999999999999887642 122256788888886543  2346899999


Q ss_pred             EecccccccCCh----HHHHHHHHHhccCCcEEEEEE
Q 026688          137 HAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       137 ~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +....=.-.+..    ..++..+.+.||++|++....
T Consensus       200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            953221111111    367889999999999998754

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.40  E-value=0.00083  Score=55.82  Aligned_cols=99  Identities=22%  Similarity=0.280  Sum_probs=65.4

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCC----HHHHHHHHHHhhhcCCCCCCCeeEEecccc-cCCCCCCc
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS----ENMLKQCYEFVQQESNFPKENFLLVRADIS-RLPFASSS  132 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s----~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~  132 (235)
                      ....-+.|+|+.+|.|.++.+|.+..    |..+..-    +..+...-.    .|+      .=...|-. .++.-...
T Consensus       362 ~~~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIyd----RGL------IG~yhDWCE~fsTYPRT  427 (506)
T PF03141_consen  362 KWGRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYD----RGL------IGVYHDWCEAFSTYPRT  427 (506)
T ss_pred             cccceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhh----ccc------chhccchhhccCCCCcc
Confidence            33345789999999999999997652    4443332    233333222    111      11222332 23434589


Q ss_pred             eeEEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEe
Q 026688          133 IDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ||+|-+.+++....+.   ..++-++-|+|+|||.++|-+.
T Consensus       428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~  468 (506)
T PF03141_consen  428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT  468 (506)
T ss_pred             hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence            9999999988877654   5889999999999999998664

; GO: 0008168 methyltransferase activity

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.37  E-value=0.004  Score=49.86  Aligned_cols=99  Identities=18%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             cCCCCCCeEEEecCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-cccCCCCCCcee
Q 026688           57 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-ISRLPFASSSID  134 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~D  134 (235)
                      .+..|+.+|+-+|+| .|..+..+++.. .++|+++|.+++-++.|++.-+         -.++... ......-.+.+|
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGA---------d~~i~~~~~~~~~~~~~~~d  231 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGA---------DHVINSSDSDALEAVKEIAD  231 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCC---------cEEEEcCCchhhHHhHhhCc
Confidence            345678999999997 357777777743 2699999999999999987522         2223322 211111123499


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +|+..-.       ...+....+.|++||.+++.....
T Consensus       232 ~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         232 AIIDTVG-------PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             EEEECCC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence            9995433       345788999999999999987663

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.28  E-value=0.015  Score=45.63  Aligned_cols=70  Identities=21%  Similarity=0.303  Sum_probs=52.1

Q ss_pred             eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC--CCceeEEEeccc
Q 026688           64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAA  141 (235)
Q Consensus        64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~~~~  141 (235)
                      +++|+-||.|.++.-+.+.+. ..+.++|+++..++..+.+...        . +...|+.+....  ...+|+++....
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~--------~-~~~~Di~~~~~~~~~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPN--------K-LIEGDITKIDEKDFIPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCC--------C-CccCccccCchhhcCCCCCEEEeCCC
Confidence            689999999999999988763 4688999999999888876532        1 455677665321  356999997654


Q ss_pred             cc
Q 026688          142 IH  143 (235)
Q Consensus       142 l~  143 (235)
                      +.
T Consensus        72 Cq   73 (275)
T cd00315          72 CQ   73 (275)
T ss_pred             Ch
Confidence            43

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.28  E-value=0.0011  Score=50.04  Aligned_cols=91  Identities=20%  Similarity=0.191  Sum_probs=51.7

Q ss_pred             HHHhhcCCCCC--CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHH---HHhhhcCCC---CCCCeeEEeccc
Q 026688           52 LMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY---EFVQQESNF---PKENFLLVRADI  123 (235)
Q Consensus        52 ~i~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~---~~~~~~~~~---~~~~~~~~~~d~  123 (235)
                      .+...+...++  .+|||.-+|.|..+..++..|.  +|+++|-||-+....+   +++......   ...+++++.+|.
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            45555554433  4999999999999999987765  9999999986555444   333322110   013789999998


Q ss_pred             cc-CCCCCCceeEEEecccccc
Q 026688          124 SR-LPFASSSIDAVHAGAAIHC  144 (235)
Q Consensus       124 ~~-~~~~~~~~D~i~~~~~l~~  144 (235)
                      .+ +..+..+||+|.+.-++.+
T Consensus       142 ~~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  142 LEYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             CCHCCCHSS--SEEEE--S---
T ss_pred             HHHHhhcCCCCCEEEECCCCCC
Confidence            77 3445689999999877765

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=97.27  E-value=0.0011  Score=46.68  Aligned_cols=101  Identities=15%  Similarity=0.241  Sum_probs=63.5

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHH-HHHHhhhcCCCCCCCeeEEeccccc-CCCCCCceeEEEec
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-CYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~-a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~  139 (235)
                      +++++-+|+..=..=....+.+. +++..+|.++--++. .+.++          ..+...|+.. ..-..++||.+.|.
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA-~~iltveyn~L~i~~~~~dr~----------ssi~p~df~~~~~~y~~~fD~~as~   70 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGA-AKILTVEYNKLEIQEEFRDRL----------SSILPVDFAKNWQKYAGSFDFAASF   70 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCC-ceEEEEeecccccCccccccc----------ccccHHHHHHHHHHhhccchhhhee
Confidence            46778888876544444444543 578888876522211 11111          1122233321 11224789999999


Q ss_pred             ccccccC-----Ch------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          140 AAIHCWS-----SP------STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       140 ~~l~~~~-----~~------~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      .+++|+.     ||      .+.+.++.++|||||.+++..+...
T Consensus        71 ~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~  115 (177)
T PF03269_consen   71 SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT  115 (177)
T ss_pred             chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence            9998872     33      3778899999999999999998875

>PRK11524 putative methyltransferase; Provisional

Probab=97.22  E-value=0.0018  Score=51.06  Aligned_cols=61  Identities=15%  Similarity=0.131  Sum_probs=52.3

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  107 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~  107 (235)
                      .-+.++.+.++.... .++..|||.-||+|..+....+.+.  +++|+|++++.++.|++++..
T Consensus       192 ~kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        192 QKPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             cChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence            345677888777666 3488999999999999999988877  999999999999999999864

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.19  E-value=0.01  Score=47.57  Aligned_cols=114  Identities=19%  Similarity=0.172  Sum_probs=77.7

Q ss_pred             cCCCCCCeEEEecCCCchHHHHHHHcCCC----ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----
Q 026688           57 LKPVLGGNIIDASCGSGLFSRIFAKSGLF----SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  127 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----  127 (235)
                      +...|+.+|||+.+-+|.-+..+.+....    ..|++-|.++.-+....+.+...+   ..++.+...|+...|     
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~~  227 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYLK  227 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceeccccccc
Confidence            35667899999999999888877776432    379999999877776666653322   334555555554332     


Q ss_pred             ----CCCCceeEEEecc------cccccCCh-----------------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          128 ----FASSSIDAVHAGA------AIHCWSSP-----------------STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       128 ----~~~~~~D~i~~~~------~l~~~~~~-----------------~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                          .....||-|+|.-      ++.+-++.                 ..++....++|++||.++.++.+..
T Consensus       228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn  300 (375)
T KOG2198|consen  228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN  300 (375)
T ss_pred             cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence                1234699999742      22222111                 2678899999999999999998764

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=97.15  E-value=0.0036  Score=45.41  Aligned_cols=113  Identities=13%  Similarity=0.086  Sum_probs=78.9

Q ss_pred             HhhcCCCCCCeEEEecCCCchHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--
Q 026688           54 KGYLKPVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  127 (235)
Q Consensus        54 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--  127 (235)
                      .+++-...+..|+|+|.-.|..+..++..    +...+|.++|+|-..+..+..+        .+++.|+.++-.+..  
T Consensus        62 Qellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~  133 (237)
T COG3510          62 QELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIA  133 (237)
T ss_pred             HHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHH
Confidence            33443344789999999888777665543    5457999999986554443322        457899999886632  


Q ss_pred             -----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCC
Q 026688          128 -----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG  174 (235)
Q Consensus       128 -----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~  174 (235)
                           ..++..-+.+|..+-|+.....+.++.+.++|..|-++++.+.+.+.
T Consensus       134 eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d  185 (237)
T COG3510         134 EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND  185 (237)
T ss_pred             HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence                 22333445556677777776778889999999999999998877654

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=97.13  E-value=0.0069  Score=46.34  Aligned_cols=108  Identities=14%  Similarity=0.040  Sum_probs=67.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHh-----hhcCCCCCCCeeEEeccccc---CCCCCCc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV-----QQESNFPKENFLLVRADISR---LPFASSS  132 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~~~~~~~~~d~~~---~~~~~~~  132 (235)
                      ...+||++|+|+|--+..++... ..+|...|... .+...+...     .....  ...+.+...+=..   .....+.
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~--g~~v~v~~L~Wg~~~~~~~~~~~  161 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQL--GGSVIVAILVWGNALDVSFRLPN  161 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhc--CCceeEEEEecCCcccHhhccCC
Confidence            36789999999997666666543 45888888753 222222221     11110  1122222222111   1111233


Q ss_pred             -eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          133 -IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       133 -~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                       +|+|++..++++....+.++..+...|..++.+++...-.
T Consensus       162 ~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr  202 (248)
T KOG2793|consen  162 PFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR  202 (248)
T ss_pred             cccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence             8999999999988888888999999999999777766554

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.07  E-value=0.028  Score=45.88  Aligned_cols=102  Identities=23%  Similarity=0.272  Sum_probs=69.7

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-ccc-c-CCCC-CCceeE
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DIS-R-LPFA-SSSIDA  135 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~-~-~~~~-~~~~D~  135 (235)
                      ++.+|+-+|||+ |.++..+++...-..|+++|.++.-++.|++.....      .+..... +.. . .... ...+|+
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~------~~~~~~~~~~~~~~~~~t~g~g~D~  241 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD------VVVNPSEDDAGAEILELTGGRGADV  241 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe------EeecCccccHHHHHHHHhCCCCCCE
Confidence            345999999998 888788888765679999999999999999854321      1111111 110 0 0111 236999


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCC
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG  174 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~  174 (235)
                      ++-...      ....+..+.++++|||.+++.......
T Consensus       242 vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         242 VIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             EEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            994433      234789999999999999998776543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.06  E-value=0.0066  Score=53.83  Aligned_cols=129  Identities=16%  Similarity=0.085  Sum_probs=76.5

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcC-------C-----CceEEEEeCCH---HHHHHHH-----------HHhhhcCCC--
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSG-------L-----FSLVVALDYSE---NMLKQCY-----------EFVQQESNF--  111 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~-------~-----~~~v~~~D~s~---~~~~~a~-----------~~~~~~~~~--  111 (235)
                      .+.-+|+|+|-|+|.+.....+..       +     ..+++.+|..|   +.+..+.           +....++..  
T Consensus        56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  135 (662)
T PRK01747         56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP  135 (662)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence            345799999999998665444322       2     35789999754   2222222           222111100  


Q ss_pred             ---------CCCCeeEEecccccC-CCCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEEEeccCCCcc
Q 026688          112 ---------PKENFLLVRADISRL-PFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFN  177 (235)
Q Consensus       112 ---------~~~~~~~~~~d~~~~-~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~~~~~  177 (235)
                               ....+++..+|+.+. +--...+|+++....-- -.+|    ..+++.+.++++|||.+.--+        
T Consensus       136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP-~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------  206 (662)
T PRK01747        136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAP-AKNPDMWSPNLFNALARLARPGATLATFT--------  206 (662)
T ss_pred             CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCC-ccChhhccHHHHHHHHHHhCCCCEEEEee--------
Confidence                     011344566777542 21124689999754332 1234    488999999999999887322        


Q ss_pred             cchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          178 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                                            +...+++-|.++||++-+..
T Consensus       207 ----------------------~a~~vr~~l~~~GF~v~~~~  226 (662)
T PRK01747        207 ----------------------SAGFVRRGLQEAGFTVRKVK  226 (662)
T ss_pred             ----------------------hHHHHHHHHHHcCCeeeecC
Confidence                                  23457778888888876554

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.02  E-value=0.0015  Score=48.68  Aligned_cols=98  Identities=22%  Similarity=0.383  Sum_probs=70.6

Q ss_pred             CCeEEEecCCCchHHHHHHHcCC---------CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGL---------FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  127 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~---------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----  127 (235)
                      -.+++|+.+-.|.+++.+.++..         +..++++|+.+ |        +     +-+.+...++|+....     
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M--------a-----PI~GV~qlq~DIT~~stae~I  107 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M--------A-----PIEGVIQLQGDITSASTAEAI  107 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C--------C-----ccCceEEeecccCCHhHHHHH
Confidence            57999999999999998887631         12399999855 1        1     1356778889987642     


Q ss_pred             ---CCCCceeEEEecc-----cccccCCh------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          128 ---FASSSIDAVHAGA-----AIHCWSSP------STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       128 ---~~~~~~D~i~~~~-----~l~~~~~~------~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                         |...+.|+|+|..     .+|.++..      ...|.-...+|+|||.++.-.+...
T Consensus       108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~  167 (294)
T KOG1099|consen  108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR  167 (294)
T ss_pred             HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence               4556899999964     35655543      2556777889999999997666543

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.98  E-value=0.0038  Score=47.32  Aligned_cols=59  Identities=15%  Similarity=0.142  Sum_probs=45.8

Q ss_pred             CCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 026688           42 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  103 (235)
Q Consensus        42 ~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~  103 (235)
                      ..+-+.++++.++..... ++..|||.-||+|..+.+..+.+.  +.+|+|+++...+.|++
T Consensus       173 ~~~kP~~l~~~lI~~~t~-~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  173 PTQKPVELIERLIKASTN-PGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             TT-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             eecCCHHHHHHHHHhhhc-cceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence            345577888888877653 478999999999999999999877  99999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=96.95  E-value=0.0069  Score=46.13  Aligned_cols=63  Identities=13%  Similarity=0.124  Sum_probs=52.5

Q ss_pred             CCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh
Q 026688           42 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  107 (235)
Q Consensus        42 ~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~  107 (235)
                      ..+-+.++.+.++..... ++..|||.-||+|..+....+.+.  .++|+|+++...+.+.+++..
T Consensus       145 p~~kP~~l~~~~i~~~s~-~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        145 PTEKPVTSLQPLIESFTH-PNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCCCcHHHHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence            334567788887765553 478999999999999999988876  999999999999999998865

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.92  E-value=0.0005  Score=45.19  Aligned_cols=83  Identities=18%  Similarity=0.185  Sum_probs=42.0

Q ss_pred             ceeEEEeccccccc----CCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688          132 SIDAVHAGAAIHCW----SSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  205 (235)
Q Consensus       132 ~~D~i~~~~~l~~~----~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (235)
                      .||+|+|..+.-++    .|.  ..+++++.+.|+|||.+++.-...............+...+...     -+.++.+.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i-----~lrP~~F~   75 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSI-----KLRPDQFE   75 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH---------GGGHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhce-----EEChHHHH
Confidence            48999998876432    122  47899999999999999986543221100011111111111111     24567788


Q ss_pred             HHHHH--cCCceeEEE
Q 026688          206 DLCRA--CGLVDFKCT  219 (235)
Q Consensus       206 ~~l~~--~Gf~~~~~~  219 (235)
                      ..|.+  .||..++..
T Consensus        76 ~~L~~~evGF~~~e~~   91 (110)
T PF06859_consen   76 DYLLEPEVGFSSVEEL   91 (110)
T ss_dssp             HHHTSTTT---EEEEE
T ss_pred             HHHHhcccceEEEEEc
Confidence            87777  599876644

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=96.90  E-value=0.025  Score=40.83  Aligned_cols=129  Identities=19%  Similarity=0.134  Sum_probs=78.5

Q ss_pred             ecCCCchHHHHHHHcCC-CceEEEEeCC--HHHHHHHH---HHhhhcCCCCCCCeeEEecccccCC----CCCCceeEEE
Q 026688           68 ASCGSGLFSRIFAKSGL-FSLVVALDYS--ENMLKQCY---EFVQQESNFPKENFLLVRADISRLP----FASSSIDAVH  137 (235)
Q Consensus        68 iG~G~G~~~~~l~~~~~-~~~v~~~D~s--~~~~~~a~---~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~i~  137 (235)
                      ||=|.=.++..|++... ...+++.-++  .+..+...   .++.....  ..-......|+.++.    ...+.||.|+
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~--~g~~V~~~VDat~l~~~~~~~~~~FDrIi   80 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE--LGVTVLHGVDATKLHKHFRLKNQRFDRII   80 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh--cCCccccCCCCCcccccccccCCcCCEEE
Confidence            45555566667777754 4456655554  33333322   33322210  112233566766653    2457899999


Q ss_pred             ecccccc--cCC----h-------HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHH
Q 026688          138 AGAAIHC--WSS----P-------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI  204 (235)
Q Consensus       138 ~~~~l~~--~~~----~-------~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (235)
                      .++-.--  ..+    .       ..+++.+..+|+++|.+.++-.....                        ++...+
T Consensus        81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------------------------y~~W~i  136 (166)
T PF10354_consen   81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------------------------YDSWNI  136 (166)
T ss_pred             EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------------------------CccccH
Confidence            8754322  001    0       36788999999999999998766531                        355567


Q ss_pred             HHHHHHcCCceeEEEeeC
Q 026688          205 EDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~~~~  222 (235)
                      +.+.+++||.......+.
T Consensus       137 ~~lA~~~gl~l~~~~~F~  154 (166)
T PF10354_consen  137 EELAAEAGLVLVRKVPFD  154 (166)
T ss_pred             HHHHHhcCCEEEEEecCC
Confidence            788899999988877554

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=96.90  E-value=0.0021  Score=50.46  Aligned_cols=112  Identities=11%  Similarity=0.067  Sum_probs=73.6

Q ss_pred             CCeEEEecCCCchHHHHHHHcC--------------------CCceEEEEeCCH--HHHHHHHHHhhhc-----------
Q 026688           62 GGNIIDASCGSGLFSRIFAKSG--------------------LFSLVVALDYSE--NMLKQCYEFVQQE-----------  108 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~--------------------~~~~v~~~D~s~--~~~~~a~~~~~~~-----------  108 (235)
                      ..+||.||.|.|.-...++...                    +...++.+|+.+  ..+......+...           
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            3699999999986666554432                    114899999974  5666665554433           


Q ss_pred             -CC--CCCCCeeEEecccccCCCCC-------CceeEEEecccccc-----cCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          109 -SN--FPKENFLLVRADISRLPFAS-------SSIDAVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       109 -~~--~~~~~~~~~~~d~~~~~~~~-------~~~D~i~~~~~l~~-----~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                       ..  ...-++.|.+.|+.....++       ...++|.+.+++.-     ....-++|..+-..++||..|+|++....
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS  246 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS  246 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence             11  11125788899987754211       24677776655522     23335899999999999999999886553

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.88  E-value=0.0086  Score=45.16  Aligned_cols=116  Identities=15%  Similarity=0.162  Sum_probs=74.3

Q ss_pred             HHHHHHHH---hhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           47 EKEFELMK---GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        47 ~~~~~~i~---~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      .++...|.   +.+..+|+.+||-+|+++|....++.+- +|+..|++++.|+..-.........     -.|+.-+.-|
T Consensus       139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiED  213 (317)
T KOG1596|consen  139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIED  213 (317)
T ss_pred             HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeecc
Confidence            34455553   3445677999999999999998888775 7888999999987433332222211     3456666677


Q ss_pred             cccCC---CCCCceeEEEecccccccCChH---HHHHHHHHhccCCcEEEEEEecc
Q 026688          123 ISRLP---FASSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       123 ~~~~~---~~~~~~D~i~~~~~l~~~~~~~---~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +....   ....-.|+|+     ..+.+|+   .+.-++.-.||+||.++++....
T Consensus       214 ArhP~KYRmlVgmVDvIF-----aDvaqpdq~RivaLNA~~FLk~gGhfvisikan  264 (317)
T KOG1596|consen  214 ARHPAKYRMLVGMVDVIF-----ADVAQPDQARIVALNAQYFLKNGGHFVISIKAN  264 (317)
T ss_pred             CCCchheeeeeeeEEEEe-----ccCCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence            75411   1122345554     3444443   34457788999999999977543

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.82  E-value=0.011  Score=48.38  Aligned_cols=106  Identities=18%  Similarity=0.153  Sum_probs=75.8

Q ss_pred             CCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEEEec
Q 026688           62 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~  139 (235)
                      +.++||.=+|+|-=++.++.. ....+|+.-|+|+..++..++++..++... .++++.+.|+..+ ......||+|=. 
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-~~~~v~~~DAn~ll~~~~~~fD~IDl-  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-ERIEVSNMDANVLLYSRQERFDVIDL-  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-CCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-ceEEEehhhHHHHhhhccccCCEEEe-
Confidence            569999999999888877776 334589999999999999999998877532 2578888888653 224578999873 


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                         .-+..|..+++.+.+.++.||.|.++....
T Consensus       128 ---DPfGSp~pfldsA~~~v~~gGll~vTaTD~  157 (377)
T PF02005_consen  128 ---DPFGSPAPFLDSALQAVKDGGLLCVTATDT  157 (377)
T ss_dssp             -----SS--HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred             ---CCCCCccHhHHHHHHHhhcCCEEEEecccc
Confidence               444566789999999999999999977654

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.79  E-value=0.025  Score=48.15  Aligned_cols=101  Identities=23%  Similarity=0.255  Sum_probs=67.1

Q ss_pred             CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-----------C
Q 026688           59 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----------L  126 (235)
Q Consensus        59 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-----------~  126 (235)
                      ..++.+|+-+|||. |..+...++.. .+.|+++|.+++-++.+++. .         .++...|..+           .
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-G---------A~~v~i~~~e~~~~~~gya~~~  230 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-G---------AEFLELDFEEEGGSGDGYAKVM  230 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C---------CeEEEeccccccccccchhhhc
Confidence            34689999999998 66666666653 35899999999999988863 1         1211111110           0


Q ss_pred             C----------CC--CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          127 P----------FA--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 ~----------~~--~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .          +.  ...+|+|+.......-+.+.-+.+++.+.++|||.++....
T Consensus       231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0          01  14689999766554333454446999999999999887655

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.75  E-value=0.041  Score=43.57  Aligned_cols=104  Identities=17%  Similarity=0.164  Sum_probs=71.4

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-----ccccC---CC
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-----DISRL---PF  128 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-----d~~~~---~~  128 (235)
                      ..+++.+||-+|+|+ |-.+..+++..--.+|..+|+++.-++.|++ +...      .+.....     ++.+.   ..
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~------~~~~~~~~~~~~~~~~~v~~~~  238 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT------VTDPSSHKSSPQELAELVEKAL  238 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe------EEeeccccccHHHHHHHHHhhc
Confidence            455689999999998 7777777777555699999999999999998 4321      1111111     11110   12


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCC
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG  174 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~  174 (235)
                      ....+|+.+-...++      ..++.....+++||.+++..+..+.
T Consensus       239 g~~~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~~  278 (354)
T KOG0024|consen  239 GKKQPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAEE  278 (354)
T ss_pred             cccCCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCCc
Confidence            234588888554444      5677888999999999998877643

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.73  E-value=0.013  Score=43.99  Aligned_cols=125  Identities=14%  Similarity=0.215  Sum_probs=76.4

Q ss_pred             hhhcccccccccccc-ee--cccccCCCCCCHHHHHHHHhhcCC------CCCCeEEEecCCCchHHHHHHHcCCCceEE
Q 026688           19 EFFRMPFMSFIYERG-WR--QNFVWGGFPGPEKEFELMKGYLKP------VLGGNIIDASCGSGLFSRIFAKSGLFSLVV   89 (235)
Q Consensus        19 ~~~~~~~~~~~~~~~-w~--~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~   89 (235)
                      ..+....+..+|.-. |.  +.+.--+.|+....+..+.+++..      .+..++||||.|.--.=-.+-.+-....++
T Consensus        27 k~LnKAlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfv  106 (292)
T COG3129          27 KALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFV  106 (292)
T ss_pred             HHHHHHHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceee
Confidence            334444444444432 43  345556678888888888777632      235689999988743322222222234899


Q ss_pred             EEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C--C-CCCceeEEEecccccc
Q 026688           90 ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P--F-ASSSIDAVHAGAAIHC  144 (235)
Q Consensus        90 ~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~--~-~~~~~D~i~~~~~l~~  144 (235)
                      |.|+|+..++.|+..+..+... ...+++....-.. + +  . ..+.||+++|+--+|.
T Consensus       107 Gseid~~sl~sA~~ii~~N~~l-~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~  165 (292)
T COG3129         107 GSEIDSQSLSSAKAIISANPGL-ERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD  165 (292)
T ss_pred             cCccCHHHHHHHHHHHHcCcch-hhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence            9999999999999998876211 2235554333222 1 1  1 2468999999988774

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=96.66  E-value=0.091  Score=43.24  Aligned_cols=124  Identities=16%  Similarity=0.089  Sum_probs=72.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHH----HHHHc---CCCceEEEEeC----CHHHHHHHHHHhhhcCCCCCCCe
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSR----IFAKS---GLFSLVVALDY----SENMLKQCYEFVQQESNFPKENF  116 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~----~l~~~---~~~~~v~~~D~----s~~~~~~a~~~~~~~~~~~~~~~  116 (235)
                      ...+.|++.+.....-.|+|+|.|.|.--.    .|+.+   -|..++|+++.    +...++.+.+++...-..-....
T Consensus        97 taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f  176 (374)
T PF03514_consen   97 TANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF  176 (374)
T ss_pred             chhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE
Confidence            345677777777778899999999995444    44443   25678999999    78888888877754311002234


Q ss_pred             eEEec---ccccCC-----CCCCceeEEEecccccccCC-------hH-HHHHHHHHhccCCcEEEEEEeccC
Q 026688          117 LLVRA---DISRLP-----FASSSIDAVHAGAAIHCWSS-------PS-TGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       117 ~~~~~---d~~~~~-----~~~~~~D~i~~~~~l~~~~~-------~~-~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +|...   +.+++.     ...+..=+|-|...+||+.+       +. .+| ...+.|+|. .+++++...+
T Consensus       177 ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L-~~ir~L~P~-vvv~~E~ea~  247 (374)
T PF03514_consen  177 EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFL-RVIRSLNPK-VVVLVEQEAD  247 (374)
T ss_pred             EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHH-HHHHhcCCC-EEEEEeecCC
Confidence            44442   222221     22233333445566788752       22 345 445577887 4445555443

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.60  E-value=0.054  Score=43.01  Aligned_cols=163  Identities=12%  Similarity=0.019  Sum_probs=98.1

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCC-HHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  127 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---  127 (235)
                      .+.+.+... ...|+-+|||--.-...+  ..+. .+...|++ |+.++.=++.+...+..+..+.+++..|+.+..   
T Consensus        84 ~~~~~~~~g-~~qvViLgaGLDTRayRl--~~~~-~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~  159 (297)
T COG3315          84 FVRAALDAG-IRQVVILGAGLDTRAYRL--DWPK-GTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ  159 (297)
T ss_pred             HHHHHHHhc-ccEEEEeccccccceeec--CCCC-CCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence            334445544 689999999874332222  2221 35555555 677777777777766554557899999998422   


Q ss_pred             ------CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCC-Ccccc-hhHHHHHHhH--hhcCCc
Q 026688          128 ------FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDG-PFNLI-PFSRLLRQNM--MQISGS  195 (235)
Q Consensus       128 ------~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~-~~~~~-~~~~~~~~~~--~~~~~~  195 (235)
                            +.....-++++=+++.+++..  .+++..+...+.||..++........ ..... ..........  ......
T Consensus       160 ~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  239 (297)
T COG3315         160 ALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELV  239 (297)
T ss_pred             HHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccce
Confidence                  224555677888888888755  48899999999998888877641111 00000 0000000000  001112


Q ss_pred             eeecCHHHHHHHHHHcCCceeEE
Q 026688          196 YTFLSEREIEDLCRACGLVDFKC  218 (235)
Q Consensus       196 ~~~~~~~~~~~~l~~~Gf~~~~~  218 (235)
                      .......+++.++.+.||.....
T Consensus       240 ~~~~~~~e~~~~l~~~g~~~~~~  262 (297)
T COG3315         240 YFGDDPAEIETWLAERGWRSTLN  262 (297)
T ss_pred             eccCCHHHHHHHHHhcCEEEEec
Confidence            33455899999999999987665

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.59  E-value=0.005  Score=47.86  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=71.8

Q ss_pred             CCeEEEecCCCchHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           62 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      +..|+|+=+|-|+++. .+...+. ..|.++|++|..++..++.+..++.  ..+.....+|-... -+....|-|.+  
T Consensus       195 ~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N~V--~~r~~i~~gd~R~~-~~~~~AdrVnL--  268 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEANNV--MDRCRITEGDNRNP-KPRLRADRVNL--  268 (351)
T ss_pred             cchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhcch--HHHHHhhhcccccc-Cccccchheee--
Confidence            4789999999999999 5555553 5899999999999999998877643  23444455555443 23566676663  


Q ss_pred             cccccCChHHHHHHHHHhccCCc--EEEEEEecc
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGG--VFVGTTYIV  172 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG--~li~~~~~~  172 (235)
                        .-+|..++-+..+.++|+|.|  .+-+.+...
T Consensus       269 --GLlPSse~~W~~A~k~Lk~eggsilHIHenV~  300 (351)
T KOG1227|consen  269 --GLLPSSEQGWPTAIKALKPEGGSILHIHENVK  300 (351)
T ss_pred             --ccccccccchHHHHHHhhhcCCcEEEEecccc
Confidence              456666777778888888844  444444433

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.58  E-value=0.013  Score=45.47  Aligned_cols=46  Identities=13%  Similarity=0.071  Sum_probs=36.0

Q ss_pred             CCeEEEecCCCchHHHHHHHcCC--------CceEEEEeCCHHHHHHHHHHhhh
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQQ  107 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~--------~~~v~~~D~s~~~~~~a~~~~~~  107 (235)
                      +-+|+|+|+|+|.++..+++...        ..+++.+|+|+.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            57999999999999998877521        35899999999998888887765

; PDB: 4F3N_A 1ZKD_B.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.58  E-value=0.056  Score=43.84  Aligned_cols=100  Identities=16%  Similarity=0.136  Sum_probs=60.7

Q ss_pred             CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           59 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        59 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ..++.+||-.|+|. |..+..+++..-...|+++|.++.-++.+++. ...     .-+.....++.+.....+.+|+|+
T Consensus       167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~-----~vi~~~~~~~~~~~~~~g~~D~vi  240 (343)
T PRK09880        167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GAD-----KLVNPQNDDLDHYKAEKGYFDVSF  240 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCc-----EEecCCcccHHHHhccCCCCCEEE
Confidence            34578999999875 66777777664223689999999888887752 110     001111111211111123588887


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      -.     ... ...+..+.+++++||.++....
T Consensus       241 d~-----~G~-~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        241 EV-----SGH-PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             EC-----CCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence            43     222 2457788899999999998764

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.48  E-value=0.078  Score=43.82  Aligned_cols=108  Identities=19%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-ccc-C-CC-CCC
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-ISR-L-PF-ASS  131 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-~~~-~-~~-~~~  131 (235)
                      ....++.+||..|||. |..+..+++.....+++++|.+++.++.+++...      ...+.....+ ..+ + .. ...
T Consensus       180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~------~~vi~~~~~~~~~~~l~~~~~~~  253 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG------AETINFEEVDDVVEALRELTGGR  253 (386)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC------cEEEcCCcchHHHHHHHHHcCCC
Confidence            3445678999999988 8888888887543369999999998888877421      1111111111 111 1 11 223


Q ss_pred             ceeEEEecccc-----------cc----cCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          132 SIDAVHAGAAI-----------HC----WSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       132 ~~D~i~~~~~l-----------~~----~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+|+|+-...-           .|    ..++...+.++.+.++|+|.++....
T Consensus       254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            68988864321           11    13345678999999999999988753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.41  E-value=0.017  Score=48.49  Aligned_cols=101  Identities=11%  Similarity=0.160  Sum_probs=72.8

Q ss_pred             CCeEEEecCCCchHHHHHHHc----CCCceEEEEeCCHHHHHHHHHH-hhhcCCCCCCCeeEEecccccCCCCCCceeEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEF-VQQESNFPKENFLLVRADISRLPFASSSIDAV  136 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i  136 (235)
                      ...|+-+|+|-|-+.....+.    ....++++++-+|.++...+.+ ...+    ..+++++..|+...+.+..+.|++
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W----~~~Vtii~~DMR~w~ap~eq~DI~  443 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW----DNRVTIISSDMRKWNAPREQADII  443 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh----cCeeEEEeccccccCCchhhccch
Confidence            456888899999876655443    3457899999999887766542 2222    568999999999987555789998


Q ss_pred             EecccccccCCh---HHHHHHHHHhccCCcEEEE
Q 026688          137 HAGAAIHCWSSP---STGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       137 ~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~  167 (235)
                      ++ ..|..+.|-   ...|.-+.+.|||+|..|=
T Consensus       444 VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  444 VS-ELLGSFGDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             HH-HhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence            85 222333332   3778999999999987663

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=96.38  E-value=0.0099  Score=49.09  Aligned_cols=113  Identities=18%  Similarity=0.063  Sum_probs=71.3

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHc--CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc--cCCCC-CCc
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPFA-SSS  132 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~--~~~~~-~~~  132 (235)
                      ....+..++|+|.|.|.-...+...  .-.-.++.||.+..|.......+....-  ...+.+...-+.  .+|.. ...
T Consensus       197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~--~g~~~v~~~~~~r~~~pi~~~~~  274 (491)
T KOG2539|consen  197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH--IGEPIVRKLVFHRQRLPIDIKNG  274 (491)
T ss_pred             cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh--cCchhccccchhcccCCCCcccc
Confidence            3445688999999876554444332  2234799999999999998887754100  001111110111  12332 356


Q ss_pred             eeEEEecccccccCChH----HHHHHHHHhccCCcEEEEEEecc
Q 026688          133 IDAVHAGAAIHCWSSPS----TGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~----~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ||+|++.+.++++.+..    ..-..+.+..++|+.+++.+...
T Consensus       275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~  318 (491)
T KOG2539|consen  275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT  318 (491)
T ss_pred             eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence            99999999999987763    33445666788899998887654

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.11  Score=39.53  Aligned_cols=107  Identities=15%  Similarity=0.183  Sum_probs=71.8

Q ss_pred             CCCeEEEecCCCchHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-CCCCCcee
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PFASSSID  134 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D  134 (235)
                      .+.+.+|+|+|+..-+..+.+..    .-..++.+|+|...++..-+.+.....  ...+.-.++|++. + .++...--
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--~l~v~~l~~~~~~~La~~~~~~~R  155 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP--GLEVNALCGDYELALAELPRGGRR  155 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC--CCeEeehhhhHHHHHhcccCCCeE
Confidence            36799999999987777666653    336899999999888875555443311  3346667788754 1 12333323


Q ss_pred             EEE-ecccccccCCh--HHHHHHHHHhccCCcEEEEEE
Q 026688          135 AVH-AGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       135 ~i~-~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +++ ...++..+...  ..++..+...++||-++++..
T Consensus       156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv  193 (321)
T COG4301         156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV  193 (321)
T ss_pred             EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence            333 34566666533  488999999999999888754

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=96.22  E-value=0.019  Score=39.18  Aligned_cols=87  Identities=21%  Similarity=0.229  Sum_probs=56.2

Q ss_pred             CeeEEeccccc-CCCCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH
Q 026688          115 NFLLVRADISR-LPFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM  189 (235)
Q Consensus       115 ~~~~~~~d~~~-~~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~  189 (235)
                      .+++..+|+.+ ++--...+|+|+....-- -.+|    ..+++++.++++|||.+.--.                    
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP-~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------   90 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSP-AKNPELWSEELFKKLARLSKPGGTLATYS--------------------   90 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-T-TTSGGGSSHHHHHHHHHHEEEEEEEEES---------------------
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCC-cCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------
Confidence            46677788754 222237899999765322 2344    489999999999998776321                    


Q ss_pred             hhcCCceeecCHHHHHHHHHHcCCceeEEEeeC-cEEEEEEecC
Q 026688          190 MQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-GFVMFTATKP  232 (235)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-~~~~~~~~k~  232 (235)
                                ....+++.|.++||.+.+....+ ..-+.+|.||
T Consensus        91 ----------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~  124 (124)
T PF05430_consen   91 ----------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVKP  124 (124)
T ss_dssp             -----------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred             ----------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence                      23458899999999988777654 5677777764

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.22  E-value=0.15  Score=41.12  Aligned_cols=106  Identities=21%  Similarity=0.197  Sum_probs=79.8

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-CCCCceeEEEecc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAGA  140 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i~~~~  140 (235)
                      +.+|+|.=+|+|.=++.++...+..+++.-|+||..++.+++++..+.   ......+..|+..+= -....||+|=.  
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~IDi--  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVIDI--  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEec--
Confidence            689999999999888888777665689999999999999999998763   234555556665431 11256777652  


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEeccCC
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG  174 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~  174 (235)
                        .=+..|..+++.+.+.++.||.|-++-.....
T Consensus       128 --DPFGSPaPFlDaA~~s~~~~G~l~vTATD~a~  159 (380)
T COG1867         128 --DPFGSPAPFLDAALRSVRRGGLLCVTATDTAP  159 (380)
T ss_pred             --CCCCCCchHHHHHHHHhhcCCEEEEEeccccc
Confidence              33445678899999999999999987665543

>PRK10458 DNA cytosine methylase; Provisional

Probab=96.16  E-value=0.5  Score=40.09  Aligned_cols=43  Identities=19%  Similarity=0.181  Sum_probs=35.9

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHh
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  105 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~  105 (235)
                      ..+++|+-||.|.+..-+...+. -.|.++|+++.+.+.-+.+.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHc
Confidence            46999999999999999988764 36789999998888777664

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.07  E-value=0.017  Score=47.42  Aligned_cols=61  Identities=15%  Similarity=0.264  Sum_probs=50.4

Q ss_pred             CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ..|||||.|||-++....+.+.+ .|++++.-..|...|++....++.  ..+|+++..-..+.
T Consensus        68 v~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~--SdkI~vInkrStev  128 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGM--SDKINVINKRSTEV  128 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCC--ccceeeecccccee
Confidence            56999999999999999888854 699999999999999999888876  55777766555443

>PHA01634 hypothetical protein

Probab=95.98  E-value=0.028  Score=38.07  Aligned_cols=45  Identities=22%  Similarity=0.196  Sum_probs=40.0

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  107 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~  107 (235)
                      +++|+|||++-|..++.++-++. ..|+++++++...+..++....
T Consensus        29 ~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         29 QRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             CCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhh
Confidence            78999999999999999998875 5899999999999999886654

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=95.85  E-value=0.043  Score=42.23  Aligned_cols=110  Identities=17%  Similarity=0.210  Sum_probs=61.0

Q ss_pred             CCCCCeEEEecCCCchHHHHHHH---c--CCCceEEEEeCC--------------------------HHHHHHHHHHhhh
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAK---S--GLFSLVVALDYS--------------------------ENMLKQCYEFVQQ  107 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~---~--~~~~~v~~~D~s--------------------------~~~~~~a~~~~~~  107 (235)
                      ..-++.|+|.||-.|..+..++.   .  .++.++++.|-=                          ...++..++++..
T Consensus        72 ~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~  151 (248)
T PF05711_consen   72 EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR  151 (248)
T ss_dssp             TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred             cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence            34478999999998877765433   2  134578888830                          1134555555554


Q ss_pred             cCCCCCCCeeEEeccccc-CC-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          108 ESNFPKENFLLVRADISR-LP-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       108 ~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .++. ..++.++.+.+.+ +| .+...+-++.+..  .........|..++..|.|||.|++-+..
T Consensus       152 ~gl~-~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~DDY~  214 (248)
T PF05711_consen  152 YGLL-DDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFDDYG  214 (248)
T ss_dssp             TTTS-STTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             cCCC-cccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence            4432 3579999999965 33 1223332222111  11122357899999999999999997654

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.81  E-value=0.39  Score=38.57  Aligned_cols=137  Identities=20%  Similarity=0.259  Sum_probs=81.3

Q ss_pred             eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---CCCCceeEEEecc
Q 026688           64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHAGA  140 (235)
Q Consensus        64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~i~~~~  140 (235)
                      +++|+-||.|.++.-+.+.+ ...+.++|+++...+..+.+..          .....|+.+..   ++. .+|+++...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~----------~~~~~Di~~~~~~~l~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP----------EVICGDITEIDPSDLPK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT----------EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc----------ccccccccccccccccc-cceEEEecc
Confidence            68999999999999999987 3468899999998888887652          57888888764   333 599999765


Q ss_pred             cccccC---------ChH----HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688          141 AIHCWS---------SPS----TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  207 (235)
Q Consensus       141 ~l~~~~---------~~~----~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (235)
                      -+..++         ++.    ..+-++.+.++|. ++++ +....    ...              .........+...
T Consensus        70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk-~~~~-ENV~~----l~~--------------~~~~~~~~~i~~~  129 (335)
T PF00145_consen   70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPK-YFLL-ENVPG----LLS--------------SKNGEVFKEILEE  129 (335)
T ss_dssp             --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-S-EEEE-EEEGG----GGT--------------GGGHHHHHHHHHH
T ss_pred             CCceEeccccccccccccchhhHHHHHHHhhccce-EEEe-cccce----eec--------------ccccccccccccc
Confidence            443332         221    1233444556774 3333 33221    000              0000234677888


Q ss_pred             HHHcCCceeEEE---------eeCcEEEEEEecC
Q 026688          208 CRACGLVDFKCT---------RNRGFVMFTATKP  232 (235)
Q Consensus       208 l~~~Gf~~~~~~---------~~~~~~~~~~~k~  232 (235)
                      |++.|+.+....         .....+++++.|.
T Consensus       130 l~~lGY~v~~~vlna~~yGvPQ~R~R~fivg~r~  163 (335)
T PF00145_consen  130 LEELGYNVQWRVLNAADYGVPQNRERVFIVGIRK  163 (335)
T ss_dssp             HHHTTEEEEEEEEEGGGGTSSBE-EEEEEEEEEG
T ss_pred             ccccceeehhccccHhhCCCCCceeeEEEEEECC
Confidence            899998764443         2233466666654

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=95.80  E-value=0.015  Score=46.30  Aligned_cols=116  Identities=19%  Similarity=0.146  Sum_probs=82.4

Q ss_pred             HhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHH-------HHHHhhhcCCCCCCCeeEEecccccC
Q 026688           54 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-------CYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        54 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~-------a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ++.....+++-|.|.-.|||.++...+.-|.  -|.|.||+-.++..       .+.++++++.. ..-+.+..+|+..-
T Consensus       201 AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~~-~~fldvl~~D~sn~  277 (421)
T KOG2671|consen  201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-SQFLDVLTADFSNP  277 (421)
T ss_pred             hhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCCc-chhhheeeecccCc
Confidence            3444556789999999999999998888765  99999999888873       34556665531 22367788898876


Q ss_pred             CCC-CCceeEEEecccc------------------------cccCCh---------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          127 PFA-SSSIDAVHAGAAI------------------------HCWSSP---------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       127 ~~~-~~~~D~i~~~~~l------------------------~~~~~~---------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ++. ...||.|+|.--.                        .|.+..         ...|.-..+.|..||.+++-.+..
T Consensus       278 ~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~  357 (421)
T KOG2671|consen  278 PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI  357 (421)
T ss_pred             chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence            643 4579999995211                        222221         245667788999999999876644

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.79  E-value=0.02  Score=47.64  Aligned_cols=109  Identities=16%  Similarity=0.192  Sum_probs=77.3

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-------CCCCCcee
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-------PFASSSID  134 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~~D  134 (235)
                      ...+|-+|-|.|.+...+....|..++++++++|.+++.|+.++.-..   ..+.++...|-.+.       ...+..||
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~d  372 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICPD  372 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCCc
Confidence            578999999999999999888888999999999999999998775321   11233333333221       11345799


Q ss_pred             EEEeccc---ccccCCh------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          135 AVHAGAA---IHCWSSP------STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       135 ~i~~~~~---l~~~~~~------~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +++..--   .+-+..|      ..++..++..|.|.|.+++....++
T Consensus       373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~  420 (482)
T KOG2352|consen  373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN  420 (482)
T ss_pred             EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence            9985311   2223222      3788999999999999998777654

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.78  E-value=0.066  Score=42.20  Aligned_cols=101  Identities=21%  Similarity=0.213  Sum_probs=73.5

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ++.+|.-+|.|. |..+..++-- -.+.|+.+|.|.+-+++....+       ..++.+...+...+...-.+.|++|..
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga  238 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA  238 (371)
T ss_pred             CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence            356788888886 6666666543 3569999999988877776654       335666666665544334678999977


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      -.+---..|.-+.+++.+.+|||+.|+=+-
T Consensus       239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence            666666677778899999999999887543

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.53  E-value=0.16  Score=41.22  Aligned_cols=95  Identities=16%  Similarity=0.111  Sum_probs=58.7

Q ss_pred             CCCCCeEEEecCCC-chHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEE
Q 026688           59 PVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  136 (235)
Q Consensus        59 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i  136 (235)
                      ..++.+||-+|||. |.++..++++ ....+|+++|.++.-++.++. +.        .. ....+.   . ....+|+|
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~--------~~-~~~~~~---~-~~~g~d~v  226 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD--------ET-YLIDDI---P-EDLAVDHA  226 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC--------ce-eehhhh---h-hccCCcEE
Confidence            34578999999876 6566666654 323579999999887777754 11        11 111111   1 11247888


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +-...-   ......+....+++++||.+++...
T Consensus       227 iD~~G~---~~~~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         227 FECVGG---RGSQSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             EECCCC---CccHHHHHHHHHhCcCCcEEEEEee
Confidence            843221   0123568889999999999987654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.52  E-value=0.092  Score=42.31  Aligned_cols=51  Identities=8%  Similarity=0.027  Sum_probs=39.9

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcC----C----CceEEEEeCCHHHHHHHHHHhhhc
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSG----L----FSLVVALDYSENMLKQCYEFVQQE  108 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~----~----~~~v~~~D~s~~~~~~a~~~~~~~  108 (235)
                      ..+.+..++|+|.|.|.++..+++..    |    ..++..+++|+...+.=++.+...
T Consensus        74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            34446789999999999998887752    2    568999999999888777766543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.32  E-value=0.11  Score=44.24  Aligned_cols=98  Identities=19%  Similarity=0.201  Sum_probs=63.1

Q ss_pred             CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-------------
Q 026688           60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-------------  125 (235)
Q Consensus        60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-------------  125 (235)
                      .++.+++-+|+|. |..+..+++.. .+.|+++|.++..++.++.. .         .+++..|..+             
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-G---------a~~v~v~~~e~g~~~~gYa~~~s  230 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-G---------AEFLELDFKEEGGSGDGYAKVMS  230 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C---------CeEEeccccccccccccceeecC
Confidence            3568999999997 55555555542 34899999999988777752 1         1122222110             


Q ss_pred             ----------CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          126 ----------LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       126 ----------~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                                ++-....+|+|+..-.+.--+.|.-+.+++.+.+|||+.++-.
T Consensus       231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl  283 (511)
T TIGR00561       231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL  283 (511)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence                      1101246999987665554445555678889999999987743

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=95.31  E-value=0.014  Score=45.20  Aligned_cols=120  Identities=16%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             HHHHHHHhhc---CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHH-------HHhhhcCCCCCCCee
Q 026688           48 KEFELMKGYL---KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY-------EFVQQESNFPKENFL  117 (235)
Q Consensus        48 ~~~~~i~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~-------~~~~~~~~~~~~~~~  117 (235)
                      .++..+.+.+   -...+++|||+|||+|-..+.....+. ..+...|.+...++...       -.+......-..-..
T Consensus       100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~  178 (282)
T KOG2920|consen  100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDE  178 (282)
T ss_pred             HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhccccee
Confidence            4445555443   123479999999999988888877763 57888888877663211       000000000000111


Q ss_pred             EEecccccCCC-CCC--ceeEEEecccccccCChHHH-HHHHHHhccCCcEEEEE
Q 026688          118 LVRADISRLPF-ASS--SIDAVHAGAAIHCWSSPSTG-VAEISRVLRPGGVFVGT  168 (235)
Q Consensus       118 ~~~~d~~~~~~-~~~--~~D~i~~~~~l~~~~~~~~~-l~~~~~~L~pgG~li~~  168 (235)
                      +.+.++.+..+ ..+  +||+|.+..+++..+..... ...-..+++++|.++..
T Consensus       179 i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a  233 (282)
T KOG2920|consen  179 ILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA  233 (282)
T ss_pred             ccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence            11121111110 112  78999988888876665544 55666777788877653

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.14  E-value=0.63  Score=37.43  Aligned_cols=68  Identities=19%  Similarity=0.196  Sum_probs=47.7

Q ss_pred             EEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCCceeEEEecccc
Q 026688           65 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAAI  142 (235)
Q Consensus        65 vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~~~l  142 (235)
                      |+|+-||.|.++.-+.+.+. -.+.++|+++..++..+.+...         .+...|+.++.. .-..+|+++...-+
T Consensus         1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~~~---------~~~~~Di~~~~~~~~~~~dvl~gg~PC   69 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANFGN---------KVPFGDITKISPSDIPDFDILLGGFPC   69 (315)
T ss_pred             CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhCCC---------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence            58999999999999988874 3467899999988888776431         234566665431 12357888865443

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=95.12  E-value=0.088  Score=42.60  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=35.2

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  103 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~  103 (235)
                      .+-..|+|+|+|.|+++..+.-.. +..|.++|-|....+.|++
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence            345789999999999999886553 4699999999887777764

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=95.05  E-value=0.019  Score=42.71  Aligned_cols=101  Identities=15%  Similarity=0.122  Sum_probs=72.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      -....+.+++.+.+-++...+|.-.|.|..+..+.+++++.+++++|.+|-.-+.|+-...+.-   .+++....+.+..
T Consensus        28 VPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~---~~~l~a~Lg~Fs~  104 (303)
T KOG2782|consen   28 VPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELM---HPTLKAVLGNFSY  104 (303)
T ss_pred             CceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhc---chhHHHHHhhhHH
Confidence            3456788889999888999999999999999999999999999999999988777776553211   1233333333332


Q ss_pred             C-------CCCCCceeEEEecccccc--cCChH
Q 026688          126 L-------PFASSSIDAVHAGAAIHC--WSSPS  149 (235)
Q Consensus       126 ~-------~~~~~~~D~i~~~~~l~~--~~~~~  149 (235)
                      +       .+....+|-|++...+..  +++|+
T Consensus       105 ~~~l~~~~gl~~~~vDGiLmDlGcSSMQ~d~pe  137 (303)
T KOG2782|consen  105 IKSLIADTGLLDVGVDGILMDLGCSSMQVDNPE  137 (303)
T ss_pred             HHHHHHHhCCCcCCcceEEeecCccccccCCcc
Confidence            2       245678999997655433  45554

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.94  E-value=0.81  Score=36.73  Aligned_cols=96  Identities=19%  Similarity=0.201  Sum_probs=60.6

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-----CCCC
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-----PFAS  130 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-----~~~~  130 (235)
                      ...++.+||..|+|. |..+..+++.. ...+++++.++...+.+++. .         +.....+-.. .     ....
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~-g---------~~~~~~~~~~~~~~~~~~~~~  230 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL-G---------ADEVLNSLDDSPKDKKAAGLG  230 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh-C---------CCEEEcCCCcCHHHHHHHhcC
Confidence            345577898888764 77777777764 35799999999888777542 1         1111111110 0     1234


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +.+|+++....      ....++++.+.|+++|.++....
T Consensus       231 ~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         231 GGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             CCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence            56898884322      13467889999999999987643

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.80  E-value=0.055  Score=35.55  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=27.5

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCC
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS   94 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s   94 (235)
                      +...-+|+|||.|-+...|...+.  .-.|+|..
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence            467899999999999999988877  78888873

; GO: 0008168 methyltransferase activity

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.79  E-value=1.1  Score=36.29  Aligned_cols=123  Identities=21%  Similarity=0.220  Sum_probs=80.0

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC---CCCceeEEEe
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAVHA  138 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~i~~  138 (235)
                      ..+++|+-||.|.+..-+...+ .--+.++|+++..++.-+.+..        ...+...|..+...   ....+|+++.
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~--------~~~~~~~di~~~~~~~~~~~~~Dvlig   73 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFP--------HGDIILGDIKELDGEALRKSDVDVLIG   73 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCC--------CCceeechHhhcChhhccccCCCEEEe
Confidence            4689999999999999998887 3478899999999888877643        13455566655421   1117899997


Q ss_pred             cccccccC---------ChH----HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688          139 GAAIHCWS---------SPS----TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  205 (235)
Q Consensus       139 ~~~l~~~~---------~~~----~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (235)
                      ..-+..++         |+.    ..+.++...++|  .+++.+....           +...        ..-..+.+.
T Consensus        74 GpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g-----------l~~~--------~~~~~~~i~  132 (328)
T COG0270          74 GPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG-----------LLSS--------KGQTFDEIK  132 (328)
T ss_pred             CCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch-----------HHhc--------CchHHHHHH
Confidence            76655543         221    234566667777  3443333221           1000        123567888


Q ss_pred             HHHHHcCCc
Q 026688          206 DLCRACGLV  214 (235)
Q Consensus       206 ~~l~~~Gf~  214 (235)
                      +.|++.|+.
T Consensus       133 ~~L~~~GY~  141 (328)
T COG0270         133 KELEELGYG  141 (328)
T ss_pred             HHHHHcCCc
Confidence            999999996

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.75  E-value=0.87  Score=36.76  Aligned_cols=94  Identities=14%  Similarity=0.035  Sum_probs=59.1

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeE
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  135 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  135 (235)
                      ....++.+||-.|+|. |..+..+++.. .+.+++++.+++-++.+++.=.        . .+  .+..+.  ..+.+|+
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga--------~-~v--i~~~~~--~~~~~d~  226 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGA--------A-SA--GGAYDT--PPEPLDA  226 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCC--------c-ee--cccccc--CcccceE
Confidence            3455688999999864 55556666653 3579999999888777765311        1 11  111111  1235787


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ++.....      ...+....++|++||.+++...
T Consensus       227 ~i~~~~~------~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       227 AILFAPA------GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             EEECCCc------HHHHHHHHHhhCCCcEEEEEec
Confidence            6643222      2468889999999999987654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.73  E-value=0.3  Score=39.00  Aligned_cols=88  Identities=13%  Similarity=0.073  Sum_probs=55.4

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ++.++|-+|||. |.++..+++......+.++|.++.-++.+...    .        +  .|..+.  ....+|+|+-.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~--------~--i~~~~~--~~~g~Dvvid~  207 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E--------V--LDPEKD--PRRDYRAIYDA  207 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c--------c--cChhhc--cCCCCCEEEEC
Confidence            467899999875 77777777764323477788887766655431    0        0  111110  12458888843


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ..     . ...+..+.++++++|.+++...
T Consensus       208 ~G-----~-~~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       208 SG-----D-PSLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             CC-----C-HHHHHHHHHhhhcCcEEEEEee
Confidence            22     2 2457888999999999997654

>PRK13699 putative methylase; Provisional

Probab=94.70  E-value=0.15  Score=38.92  Aligned_cols=51  Identities=14%  Similarity=0.239  Sum_probs=32.7

Q ss_pred             eEEecccccC--CCCCCceeEEEeccccc----c-----c--CC----hHHHHHHHHHhccCCcEEEE
Q 026688          117 LLVRADISRL--PFASSSIDAVHAGAAIH----C-----W--SS----PSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       117 ~~~~~d~~~~--~~~~~~~D~i~~~~~l~----~-----~--~~----~~~~l~~~~~~L~pgG~li~  167 (235)
                      +++++|..+.  .++++++|+|+..--..    .     +  .+    ....+.++.|+|||||.+++
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4566676553  45677888888752111    0     0  00    13678999999999998875

>PTZ00357 methyltransferase; Provisional

Probab=94.69  E-value=0.37  Score=42.39  Aligned_cols=102  Identities=11%  Similarity=0.053  Sum_probs=62.8

Q ss_pred             CeEEEecCCCchHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHh---hhcCC---CCCCCeeEEecccccCCCCC--
Q 026688           63 GNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFV---QQESN---FPKENFLLVRADISRLPFAS--  130 (235)
Q Consensus        63 ~~vLdiG~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~~---~~~~~---~~~~~~~~~~~d~~~~~~~~--  130 (235)
                      ..|+-+|+|-|-+.....+.    +...+++++|-++..+.....+.   ..+..   .-..+++++..|+..+..+.  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            35899999999887655543    44578999999966443433332   12210   00235899999998864221  


Q ss_pred             ---------CceeEEEe--cccccccCChHHHHHHHHHhccC----CcE
Q 026688          131 ---------SSIDAVHA--GAAIHCWSSPSTGVAEISRVLRP----GGV  164 (235)
Q Consensus       131 ---------~~~D~i~~--~~~l~~~~~~~~~l~~~~~~L~p----gG~  164 (235)
                               +++|+||+  .++|..=.-....|.-+.+.||+    +|.
T Consensus       782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                     37999985  33333211112567777777776    665

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.59  E-value=0.45  Score=38.78  Aligned_cols=97  Identities=12%  Similarity=0.083  Sum_probs=57.6

Q ss_pred             CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeC---CHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeE
Q 026688           60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDY---SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  135 (235)
Q Consensus        60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  135 (235)
                      .++.+||-+|+|. |.++..+++.. .+++++++.   ++.-++.+++.    +   ...+.....+..+.. ....+|+
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----G---a~~v~~~~~~~~~~~-~~~~~d~  241 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----G---ATYVNSSKTPVAEVK-LVGEFDL  241 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----C---CEEecCCccchhhhh-hcCCCCE
Confidence            4578999999875 67777777664 348999986   56666666542    1   111111011111100 1246888


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      |+-...     . ...+....+++++||.+++....
T Consensus       242 vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         242 IIEATG-----V-PPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             EEECcC-----C-HHHHHHHHHHccCCcEEEEEecC
Confidence            884322     1 23578889999999998876543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=94.53  E-value=0.31  Score=33.21  Aligned_cols=85  Identities=24%  Similarity=0.227  Sum_probs=56.8

Q ss_pred             CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-----C-CCCCceeEEEeccccccc
Q 026688           72 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FASSSIDAVHAGAAIHCW  145 (235)
Q Consensus        72 ~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~D~i~~~~~l~~~  145 (235)
                      .|..+..+++... ++|+++|.++.-++.+++.-         -..+...+-.+.     . .+...+|+|+-.-     
T Consensus         2 vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~G---------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----   66 (130)
T PF00107_consen    2 VGLMAIQLAKAMG-AKVIATDRSEEKLELAKELG---------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----   66 (130)
T ss_dssp             HHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT---------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----
T ss_pred             hHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhc---------ccccccccccccccccccccccccceEEEEec-----
Confidence            4677777777754 79999999999888887631         111222221111     1 2235799999432     


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          146 SSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       146 ~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      . ....++....+++|+|.+++.....
T Consensus        67 g-~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   67 G-SGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             S-SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             C-cHHHHHHHHHHhccCCEEEEEEccC
Confidence            2 2467899999999999999987665

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.51  E-value=1  Score=36.79  Aligned_cols=100  Identities=16%  Similarity=0.108  Sum_probs=59.4

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C-CCCCc
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P-FASSS  132 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~  132 (235)
                      ...++.+||-.|+|. |..+..+++.. .+ .|+++|.++.-.+.+++. ..     ..-+.....+..+ . . .....
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~-Ga-----~~~i~~~~~~~~~~i~~~~~~~g  245 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREF-GA-----THTVNSSGTDPVEAIRALTGGFG  245 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc-CC-----ceEEcCCCcCHHHHHHHHhCCCC
Confidence            445688999999865 66666677664 34 599999999888777542 11     0001111111110 0 0 12235


Q ss_pred             eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +|+|+-.     ...+ ..++...+.+++||.+++...
T Consensus       246 ~d~vid~-----~g~~-~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       246 ADVVIDA-----VGRP-ETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCEEEEC-----CCCH-HHHHHHHHHhccCCEEEEECC
Confidence            8888832     2222 357778899999999987654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=94.49  E-value=0.055  Score=44.35  Aligned_cols=104  Identities=21%  Similarity=0.276  Sum_probs=70.0

Q ss_pred             CCCcccccccChhhhhhcccccccccccceecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC
Q 026688            5 SGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~   84 (235)
                      |+++++.+....+...|.-.+-    +-.|..+..        ..-+.+....+  ++..|.|+-||.|-++..+++.+ 
T Consensus       207 AGe~n~vtevre~~~~Fk~Dfs----kVYWnsRL~--------~Eherlsg~fk--~gevv~D~FaGvGPfa~Pa~kK~-  271 (495)
T KOG2078|consen  207 AGERNLVTEVREGGERFKFDFS----KVYWNSRLS--------HEHERLSGLFK--PGEVVCDVFAGVGPFALPAAKKG-  271 (495)
T ss_pred             cCCCceEEEEecCCeeEEEecc----eEEeeccch--------hHHHHHhhccC--CcchhhhhhcCcCccccchhhcC-
Confidence            4555666666555555555432    222665542        12234444444  48899999999999999999887 


Q ss_pred             CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           85 FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        85 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                       +.|++-|.++++++..+.++..+... ..++..+..|+..
T Consensus       272 -crV~aNDLNpesik~Lk~ni~lNkv~-~~~iei~Nmda~~  310 (495)
T KOG2078|consen  272 -CRVYANDLNPESIKWLKANIKLNKVD-PSAIEIFNMDAKD  310 (495)
T ss_pred             -cEEEecCCCHHHHHHHHHhccccccc-hhheeeecccHHH
Confidence             59999999999999999988765431 2247777766643

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.20  E-value=1  Score=36.97  Aligned_cols=101  Identities=19%  Similarity=0.180  Sum_probs=59.3

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-CCCCCc
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PFASSS  132 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~  132 (235)
                      ....++.+||-.|+|. |..+..+++.. .+ .|+++|.++.-++.+++. ..     ..-+.....+..+ . ....+.
T Consensus       187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~-Ga-----~~~i~~~~~~~~~~i~~~~~~g  259 (371)
T cd08281         187 AGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALAREL-GA-----TATVNAGDPNAVEQVRELTGGG  259 (371)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHc-CC-----ceEeCCCchhHHHHHHHHhCCC
Confidence            3445678899999875 66666666654 34 699999999888877642 11     0001111111110 0 011235


Q ss_pred             eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +|+|+-..     .. ...+....+.++++|.++....
T Consensus       260 ~d~vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         260 VDYAFEMA-----GS-VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCEEEECC-----CC-hHHHHHHHHHHhcCCEEEEEcc
Confidence            88888422     11 2457788899999999887553

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=94.13  E-value=0.37  Score=37.46  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=65.7

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC---CceeEEEe
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS---SSIDAVHA  138 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~D~i~~  138 (235)
                      ++.|+-+| -.--.+++++-.+-..++..+|+++..+...++.+.+.+   ..++..+..|+.+ |+|+   .+||+++.
T Consensus       153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~-plpe~~~~kFDvfiT  227 (354)
T COG1568         153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRN-PLPEDLKRKFDVFIT  227 (354)
T ss_pred             CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcc-cChHHHHhhCCeeec
Confidence            57799999 444444544444433589999999999999988887776   4568889999976 4333   68999883


Q ss_pred             cccccccCChHHHHHHHHHhccCC---cEEEEEEe
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPG---GVFVGTTY  170 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pg---G~li~~~~  170 (235)
                      .-. +.++....++..=...|+.-   |++.++..
T Consensus       228 DPp-eTi~alk~FlgRGI~tLkg~~~aGyfgiT~r  261 (354)
T COG1568         228 DPP-ETIKALKLFLGRGIATLKGEGCAGYFGITRR  261 (354)
T ss_pred             Cch-hhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence            110 00111124455545566654   66666543

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.11  E-value=0.21  Score=41.08  Aligned_cols=101  Identities=17%  Similarity=0.123  Sum_probs=54.9

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ++.+|+-+|+|. |..+...++.. .++|+++|.++.-++.+...+.       ..+.....+...+.-.-..+|+|+..
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence            457799999985 66666555543 3489999999876665544321       11111111111111012468999965


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ....--+.+.-+-++..+.++||+.++-..
T Consensus       238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            322111122222355667789988776544

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.77  E-value=1.3  Score=34.79  Aligned_cols=100  Identities=18%  Similarity=0.078  Sum_probs=58.5

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe--cccccCCCCCCcee
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR--ADISRLPFASSSID  134 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~D  134 (235)
                      ...++.+||-+|+|. |..+..+++..-...|+++|.++.-++.+++.-...      -+....  ..+... .....+|
T Consensus       117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~------~i~~~~~~~~~~~~-~~~~g~d  189 (280)
T TIGR03366       117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA------LAEPEVLAERQGGL-QNGRGVD  189 (280)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE------ecCchhhHHHHHHH-hCCCCCC
Confidence            334678999999875 666666666542224889999888777776521100      000000  000011 1123588


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +++-.     ... ...++.+.++++|+|.+++...
T Consensus       190 ~vid~-----~G~-~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       190 VALEF-----SGA-TAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             EEEEC-----CCC-hHHHHHHHHHhcCCCEEEEecc
Confidence            88732     211 2457888999999999987664

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=93.66  E-value=2  Score=32.28  Aligned_cols=113  Identities=15%  Similarity=0.050  Sum_probs=65.0

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCch--HHH--HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGL--FSR--IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~--~~~--~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .+.|..+..-...+.++++.|+.|.  .+.  ..+.+.-..+++++-++++.+...++.+...++  ...++|+.++..+
T Consensus        30 aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~--~~~vEfvvg~~~e  107 (218)
T PF07279_consen   30 AEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL--SDVVEFVVGEAPE  107 (218)
T ss_pred             HHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc--cccceEEecCCHH
Confidence            3444444444446789999665432  233  334444456999999999888888888876553  2346888887533


Q ss_pred             -CCCCCCceeEEEecccccccCChHHHHHHHHHhc--cCCcEEEEEEe
Q 026688          126 -LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVL--RPGGVFVGTTY  170 (235)
Q Consensus       126 -~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L--~pgG~li~~~~  170 (235)
                       .-..-...|.++...-.      +.+..++.+.+  .|.|.+++...
T Consensus       108 ~~~~~~~~iDF~vVDc~~------~d~~~~vl~~~~~~~~GaVVV~~N  149 (218)
T PF07279_consen  108 EVMPGLKGIDFVVVDCKR------EDFAARVLRAAKLSPRGAVVVCYN  149 (218)
T ss_pred             HHHhhccCCCEEEEeCCc------hhHHHHHHHHhccCCCceEEEEec
Confidence             21112457877743322      22232333433  35677666543

The function of this family is unknown.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=93.49  E-value=1.5  Score=36.49  Aligned_cols=106  Identities=19%  Similarity=0.196  Sum_probs=71.2

Q ss_pred             CCCCeEEEecC-CCc------hHHHHHHHcCCCceEEEEeCC-HHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----
Q 026688           60 VLGGNIIDASC-GSG------LFSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP----  127 (235)
Q Consensus        60 ~~~~~vLdiG~-G~G------~~~~~l~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----  127 (235)
                      .++..|+=+|- |+|      .++.++.+++...-++++|.- |.++++.+......      ++.|+..+-...|    
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~------~v~~f~~~~~~~Pv~Ia  171 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQV------GVPFFGSGTEKDPVEIA  171 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHc------CCceecCCCCCCHHHHH
Confidence            34677888875 554      445566666666678899974 88888888776543      4555555433333    


Q ss_pred             ------CCCCceeEEEecccc-cccCCh-HHHHHHHHHhccCCcEEEEEEec
Q 026688          128 ------FASSSIDAVHAGAAI-HCWSSP-STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ------~~~~~~D~i~~~~~l-~~~~~~-~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                            +....||+|++...= +|+++. -.-++++++.++|.=.|++.+..
T Consensus       172 k~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam  223 (451)
T COG0541         172 KAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM  223 (451)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence                  224679999986553 334332 36789999999999888887754

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=93.47  E-value=2.3  Score=36.59  Aligned_cols=128  Identities=16%  Similarity=0.126  Sum_probs=76.9

Q ss_pred             CCCCHHHHHHHHhhcCCC--CCCeEEEecCCCchHHHHHHHc---C-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe
Q 026688           43 FPGPEKEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKS---G-LFSLVVALDYSENMLKQCYEFVQQESNFPKENF  116 (235)
Q Consensus        43 ~~~~~~~~~~i~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~---~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~  116 (235)
                      +..+.+..+.+.+.+.+.  +...|.|..||+|.+.....+.   + ....++|.+..+.+...++.++..++.. ....
T Consensus       197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~-~~t~  275 (501)
T TIGR00497       197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID-YANF  275 (501)
T ss_pred             eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC-cccc
Confidence            344566666666665543  4578999999999988754432   1 1246999999999999999876544321 1122


Q ss_pred             eEEecccccC-CC-CCCceeEEEecccc--------------------ccc----CCh-HHHHHHHHHhccCCcEEEEEE
Q 026688          117 LLVRADISRL-PF-ASSSIDAVHAGAAI--------------------HCW----SSP-STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       117 ~~~~~d~~~~-~~-~~~~~D~i~~~~~l--------------------~~~----~~~-~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ....+|.... .. ....||.|+++-.+                    .|+    .+. ..++..+...|++||...++-
T Consensus       276 ~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~  355 (501)
T TIGR00497       276 NIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC  355 (501)
T ss_pred             CcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence            2223333221 11 12457777754311                    111    111 377889999999999876655


Q ss_pred             ec
Q 026688          170 YI  171 (235)
Q Consensus       170 ~~  171 (235)
                      +.
T Consensus       356 ~~  357 (501)
T TIGR00497       356 FP  357 (501)
T ss_pred             cC
Confidence            53

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=93.46  E-value=2.6  Score=33.80  Aligned_cols=131  Identities=8%  Similarity=0.026  Sum_probs=65.6

Q ss_pred             HhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-ccccCCCCCC
Q 026688           54 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASS  131 (235)
Q Consensus        54 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~  131 (235)
                      ...+...++.+|+-+|+|. |......+.......++.+|.+++-.+...+.+.         ...... +..+.   -.
T Consensus       170 ~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g---------~~~~~~~~~~~~---l~  237 (311)
T cd05213         170 EKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG---------GNAVPLDELLEL---LN  237 (311)
T ss_pred             HHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC---------CeEEeHHHHHHH---Hh
Confidence            3333334578999999986 5544444333212479999998765433322221         112221 22211   24


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHH
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  210 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  210 (235)
                      .+|+|+....-.+.   ...+..+.+....++.+++....+.+.   .|...        .-.....++.++|+.+.++
T Consensus       238 ~aDvVi~at~~~~~---~~~~~~~~~~~~~~~~~viDlavPrdi---~~~v~--------~l~~v~l~~vDdl~~~~~~  302 (311)
T cd05213         238 EADVVISATGAPHY---AKIVERAMKKRSGKPRLIVDLAVPRDI---EPEVG--------ELEGVRLYTIDDLEEVVEE  302 (311)
T ss_pred             cCCEEEECCCCCch---HHHHHHHHhhCCCCCeEEEEeCCCCCC---chhhc--------cCCCcEEEEHHHhHHHHHH
Confidence            57999976554433   233344433333345666544433221   11111        0123456788888887664

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.39  E-value=0.12  Score=43.18  Aligned_cols=108  Identities=22%  Similarity=0.214  Sum_probs=78.7

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----CCCCCcee
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSID  134 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D  134 (235)
                      .++.+|||.=|++|--++.+++..+. .++++-|.++..+...+++...++.  ...+.....|+..+    +-....||
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v--~~ive~~~~DA~~lM~~~~~~~~~FD  185 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV--EDIVEPHHSDANVLMYEHPMVAKFFD  185 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc--hhhcccccchHHHHHHhccccccccc
Confidence            34678999999999888888887654 5799999999999999988876542  22344555555432    22346788


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +|=+    .-+..+-.+|+.+.+.++.||.|.++.....
T Consensus       186 vIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~TD~a  220 (525)
T KOG1253|consen  186 VIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCTDMA  220 (525)
T ss_pred             eEec----CCCCCccHHHHHHHHHhhcCCEEEEEecchH
Confidence            8763    2233456889999999999999999776543

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.97  E-value=2.4  Score=34.17  Aligned_cols=101  Identities=14%  Similarity=0.098  Sum_probs=58.6

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C-CCCCc
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-FASSS  132 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~  132 (235)
                      +...++.+||-.|+|. |..+..+++.. .++ +++++.+++-.+.+++. ..     ..-+.....+.... . .....
T Consensus       159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~-ga-----~~~i~~~~~~~~~~~~~~~~~~  231 (339)
T cd08239         159 VGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL-GA-----DFVINSGQDDVQEIRELTSGAG  231 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-CC-----CEEEcCCcchHHHHHHHhCCCC
Confidence            4455688999998864 56666666654 345 99999998877777542 11     00011100111011 0 12246


Q ss_pred             eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +|+|+-...      ....+....+.|+++|.+++...
T Consensus       232 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         232 ADVAIECSG------NTAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CCEEEECCC------CHHHHHHHHHHhhcCCEEEEEcC
Confidence            898884221      12345677889999999987654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02740 Alcohol dehydrogenase-like

Probab=92.97  E-value=2.5  Score=34.93  Aligned_cols=99  Identities=14%  Similarity=0.129  Sum_probs=59.4

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-----ccc-C-CC
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-----ISR-L-PF  128 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~-~~  128 (235)
                      ....++.+||-+|+|. |..+..+++......|+++|.+++-++.+++.    +   . . .++...     ..+ . ..
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----G---a-~-~~i~~~~~~~~~~~~v~~~  264 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----G---I-T-DFINPKDSDKPVHERIREM  264 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----C---C-c-EEEecccccchHHHHHHHH
Confidence            3455688999999875 66666677664222699999999888888652    1   1 1 111111     111 0 01


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                      ..+.+|+|+-...     .+ ..+....+.+++| |.+++...
T Consensus       265 ~~~g~dvvid~~G-----~~-~~~~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        265 TGGGVDYSFECAG-----NV-EVLREAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             hCCCCCEEEECCC-----Ch-HHHHHHHHhhhcCCCEEEEEcc
Confidence            1226898884222     22 4577788888886 88877554

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=92.90  E-value=1.5  Score=29.33  Aligned_cols=90  Identities=19%  Similarity=0.242  Sum_probs=57.8

Q ss_pred             CCeEEEecCCCc-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC-CCceeEEEec
Q 026688           62 GGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~~  139 (235)
                      .++|+|+|.|-= ..+..+++++.  .++++|+.+.   .+           ...++++..|+.+.... =...|+|.+ 
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~a-----------~~g~~~v~DDitnP~~~iY~~A~lIYS-   76 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---TA-----------PEGLRFVVDDITNPNISIYEGADLIYS-   76 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---cC-----------cccceEEEccCCCccHHHhhCccceee-
Confidence            469999999874 45667777764  8999999875   11           23678999999873211 034566654 


Q ss_pred             ccccccCChHHHHHHHHHhccC-CcEEEEEEeccC
Q 026688          140 AAIHCWSSPSTGVAEISRVLRP-GGVFVGTTYIVD  173 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~p-gG~li~~~~~~~  173 (235)
                           +..+..+.+.+.++.+. |..+++.....+
T Consensus        77 -----iRpppEl~~~ildva~aVga~l~I~pL~Ge  106 (129)
T COG1255          77 -----IRPPPELQSAILDVAKAVGAPLYIKPLTGE  106 (129)
T ss_pred             -----cCCCHHHHHHHHHHHHhhCCCEEEEecCCC
Confidence                 44454555555555554 556777666554

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=92.90  E-value=0.19  Score=36.90  Aligned_cols=96  Identities=11%  Similarity=0.141  Sum_probs=51.9

Q ss_pred             HHHhhcCCCCC-CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---
Q 026688           52 LMKGYLKPVLG-GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  127 (235)
Q Consensus        52 ~i~~~~~~~~~-~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---  127 (235)
                      .+.+++...++ ..|+.+|||.-.....+....+...++-+|. |++++.-++.+...+.....+.+++..|+.+..   
T Consensus        68 ~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~  146 (183)
T PF04072_consen   68 AVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWID  146 (183)
T ss_dssp             HHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHH
T ss_pred             HHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHH
Confidence            34444533233 4899999999888887877655445555554 556666666655431100123567888887521   


Q ss_pred             ------CCCCceeEEEecccccccCCh
Q 026688          128 ------FASSSIDAVHAGAAIHCWSSP  148 (235)
Q Consensus       128 ------~~~~~~D~i~~~~~l~~~~~~  148 (235)
                            +..+..-++++-+++.+++..
T Consensus       147 ~L~~~g~~~~~ptl~i~Egvl~Yl~~~  173 (183)
T PF04072_consen  147 ALPKAGFDPDRPTLFIAEGVLMYLSPE  173 (183)
T ss_dssp             HHHHCTT-TTSEEEEEEESSGGGS-HH
T ss_pred             HHHHhCCCCCCCeEEEEcchhhcCCHH
Confidence                  223455566666777776533

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.65  E-value=1.6  Score=36.49  Aligned_cols=103  Identities=10%  Similarity=0.023  Sum_probs=64.1

Q ss_pred             CHHHHHHHHhhcCC-CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           46 PEKEFELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        46 ~~~~~~~i~~~~~~-~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      .+...+.+....+. .++++|+-+|+|. |......++.. .++|+++|.++.-++.|+..          .....  +.
T Consensus       185 g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----------G~~~~--~~  251 (413)
T cd00401         185 RESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----------GYEVM--TM  251 (413)
T ss_pred             chhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----------CCEEc--cH
Confidence            34455666665543 4589999999998 66555555442 35899999998777766541          11111  12


Q ss_pred             ccCCCCCCceeEEEecccccccCChHHHHHH-HHHhccCCcEEEEEEe
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAE-ISRVLRPGGVFVGTTY  170 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~-~~~~L~pgG~li~~~~  170 (235)
                      .+.   -...|+|+...     ..+ ..+.. ..+.+++||.++....
T Consensus       252 ~e~---v~~aDVVI~at-----G~~-~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         252 EEA---VKEGDIFVTTT-----GNK-DIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             HHH---HcCCCEEEECC-----CCH-HHHHHHHHhcCCCCcEEEEeCC
Confidence            111   13579998532     222 34544 5889999999987653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=92.58  E-value=3  Score=34.71  Aligned_cols=106  Identities=17%  Similarity=0.169  Sum_probs=60.8

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---cccc-C-C-CC
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-L-P-FA  129 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~-~-~-~~  129 (235)
                      ....++.+||-.|+|. |..+..+++..--..++.+|.++.-++.+++.    +   . . .+...   +..+ + . ..
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----G---a-~-~v~~~~~~~~~~~v~~~~~  251 (393)
T TIGR02819       181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----G---C-E-TVDLSKDATLPEQIEQILG  251 (393)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----C---C-e-EEecCCcccHHHHHHHHcC
Confidence            3445578888888875 66666666653222466778888777777662    1   1 1 11111   1111 0 0 12


Q ss_pred             CCceeEEEecccccc--------cCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          130 SSSIDAVHAGAAIHC--------WSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~--------~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ...+|+++-......        ..++...++.+.+++++||.+++....
T Consensus       252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence            245898884333210        011224788999999999999986653

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.50  E-value=1.5  Score=33.80  Aligned_cols=99  Identities=23%  Similarity=0.274  Sum_probs=59.1

Q ss_pred             CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-CCCCCceeEE
Q 026688           60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PFASSSIDAV  136 (235)
Q Consensus        60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~i  136 (235)
                      .++.+||..|+|+ |.....+++.. ..++++++.++...+.+++.-..      .-+.....+... . ....+.+|++
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~d~v  205 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGAD------HVIDYKEEDLEEELRLTGGGGADVV  205 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCc------eeccCCcCCHHHHHHHhcCCCCCEE
Confidence            5678999999986 66666666654 35899999998777766542100      000000001100 0 0123568999


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +....-      ...+..+.+.++++|.++.....
T Consensus       206 i~~~~~------~~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         206 IDAVGG------PETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             EECCCC------HHHHHHHHHhcccCCEEEEEccC
Confidence            853221      13567788899999998876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=92.43  E-value=1  Score=35.64  Aligned_cols=63  Identities=14%  Similarity=0.151  Sum_probs=52.5

Q ss_pred             CCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc
Q 026688           43 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  108 (235)
Q Consensus        43 ~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~  108 (235)
                      ...+..+.+.+... ...++..|||.=+|+|..+......+.  .++|+|+++..++.+.+++...
T Consensus       205 ~~~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         205 AQKPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CCChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhh
Confidence            34456677777776 455689999999999999999888876  8999999999999999998764

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=92.37  E-value=2  Score=35.15  Aligned_cols=96  Identities=15%  Similarity=0.140  Sum_probs=53.1

Q ss_pred             CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-cccccCCCCCCceeEEE
Q 026688           60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVH  137 (235)
Q Consensus        60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~i~  137 (235)
                      .++.+||-.|+|. |..+..+++.. .+.+++++.++.-...+.+.+   +   . . .++. .+........+.+|+++
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~---G---a-~-~vi~~~~~~~~~~~~~~~D~vi  252 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRL---G---A-D-SFLVSTDPEKMKAAIGTMDYII  252 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhC---C---C-c-EEEcCCCHHHHHhhcCCCCEEE
Confidence            4578888899875 66666666654 347888887765433222221   1   1 0 1111 11001100012478887


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      -..     .. ...+..+.+++++||.++....
T Consensus       253 d~~-----g~-~~~~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        253 DTV-----SA-VHALGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             ECC-----CC-HHHHHHHHHHhcCCcEEEEeCC
Confidence            322     22 2357788999999999987643

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=92.36  E-value=0.54  Score=40.69  Aligned_cols=97  Identities=19%  Similarity=0.186  Sum_probs=58.9

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----C----CCC
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----P----FAS  130 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~----~~~  130 (235)
                      .+...|||+||.+|.+++-..+..| ...|+|+|+-|-         ..     .+++...+.|+...    +    ...
T Consensus        43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi---------kp-----~~~c~t~v~dIttd~cr~~l~k~l~t  108 (780)
T KOG1098|consen   43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI---------KP-----IPNCDTLVEDITTDECRSKLRKILKT  108 (780)
T ss_pred             cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec---------cc-----CCccchhhhhhhHHHHHHHHHHHHHh
Confidence            4478999999999999998888765 357899998651         00     23444444454321    1    112


Q ss_pred             CceeEEEecccccc----cCCh-------HHHHHHHHHhccCCcEEEEEEe
Q 026688          131 SSIDAVHAGAAIHC----WSSP-------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       131 ~~~D~i~~~~~l~~----~~~~-------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      -+.|+|+..++-..    ..+.       ...++.+...|..||.++--.+
T Consensus       109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf  159 (780)
T KOG1098|consen  109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVF  159 (780)
T ss_pred             CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccc
Confidence            34577775432211    1111       2567778889999999554333

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.33  E-value=1  Score=30.65  Aligned_cols=91  Identities=15%  Similarity=0.179  Sum_probs=46.9

Q ss_pred             CCeEEEecCCCc-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC-CCceeEEEec
Q 026688           62 GGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~~  139 (235)
                      ..+|+|+|-|.= ..+..|.+++-  .|+++|+.+.   .+           ...+.++..|+.+..+. =...|+|.+.
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~G~--dV~~tDi~~~---~a-----------~~g~~~v~DDif~P~l~iY~~a~lIYSi   77 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKERGF--DVIATDINPR---KA-----------PEGVNFVVDDIFNPNLEIYEGADLIYSI   77 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S------------------STTEE---SSS--HHHHTTEEEEEEE
T ss_pred             CCcEEEECcCCCHHHHHHHHHcCC--cEEEEECccc---cc-----------ccCcceeeecccCCCHHHhcCCcEEEEe
Confidence            469999999974 56667777764  9999999986   11           22577888998763211 1357777753


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ..   -++.+..+.++.+.+  |.-+++.....+
T Consensus        78 RP---P~El~~~il~lA~~v--~adlii~pL~~e  106 (127)
T PF03686_consen   78 RP---PPELQPPILELAKKV--GADLIIRPLGGE  106 (127)
T ss_dssp             S-----TTSHHHHHHHHHHH--T-EEEEE-BTTB
T ss_pred             CC---ChHHhHHHHHHHHHh--CCCEEEECCCCC
Confidence            21   112233444444433  467777666543

; PDB: 2K4M_A.

>PRK11524 putative methyltransferase; Provisional

Probab=92.26  E-value=0.2  Score=39.67  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=38.4

Q ss_pred             CCeeEEecccccC--CCCCCceeEEEecccccc---cCC-------------hHHHHHHHHHhccCCcEEEEE
Q 026688          114 ENFLLVRADISRL--PFASSSIDAVHAGAAIHC---WSS-------------PSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       114 ~~~~~~~~d~~~~--~~~~~~~D~i~~~~~l~~---~~~-------------~~~~l~~~~~~L~pgG~li~~  168 (235)
                      ....++++|..+.  .++.+++|+|++.--+..   ..+             ....+.++.++|+|||.+++.
T Consensus         7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            3456788888773  356788999998532210   000             136889999999999999985

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=92.15  E-value=2.2  Score=34.72  Aligned_cols=100  Identities=16%  Similarity=0.131  Sum_probs=60.0

Q ss_pred             cCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-cccc-C-CCCCC
Q 026688           57 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISR-L-PFASS  131 (235)
Q Consensus        57 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~  131 (235)
                      ....++.+||-.|+ | .|..+..+++.. .+++++++.++.-.+.+++.+..     ..-+..... +..+ . ....+
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa-----~~vi~~~~~~~~~~~i~~~~~~  227 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGF-----DEAFNYKEEPDLDAALKRYFPE  227 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCC-----CEEEECCCcccHHHHHHHHCCC
Confidence            34556889999988 3 477777777764 35899999888777766533221     000111101 1111 0 01123


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .+|+++-...       ...+..+.++++++|.+++..
T Consensus       228 gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        228 GIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CcEEEEECCC-------HHHHHHHHHHhccCCEEEEEC
Confidence            6888884221       135788899999999998754

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.06  E-value=2.3  Score=33.55  Aligned_cols=75  Identities=23%  Similarity=0.238  Sum_probs=55.8

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      +..||-=|+|.|   ..+..+++++.  ++...|++++..+...+.+...+     .+....+|+.+..          -
T Consensus        38 g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g-----~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   38 GEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG-----EAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC-----ceeEEEecCCCHHHHHHHHHHHHH
Confidence            678888888887   45667788876  89999999888888777766532     5778888887632          1


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      .-+..|+++.+..+-
T Consensus       111 e~G~V~ILVNNAGI~  125 (300)
T KOG1201|consen  111 EVGDVDILVNNAGIV  125 (300)
T ss_pred             hcCCceEEEeccccc
Confidence            236899999876653

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=92.00  E-value=3.1  Score=33.71  Aligned_cols=100  Identities=15%  Similarity=0.115  Sum_probs=57.0

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--CCCCCce
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSI  133 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  133 (235)
                      ...++.+||-.|+|. |..+..+++.. .+. +++++.+++-++.+++. ...     .-+.....+....  ......+
T Consensus       157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~-Ga~-----~~i~~~~~~~~~~~~~~~~~~~  229 (347)
T PRK10309        157 QGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSL-GAM-----QTFNSREMSAPQIQSVLRELRF  229 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHc-CCc-----eEecCcccCHHHHHHHhcCCCC
Confidence            344578999999865 66666666654 334 78999988877776542 110     0001010010100  0122356


Q ss_pred             e-EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          134 D-AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       134 D-~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      | +|+-     .... ...+....+++++||.+++...
T Consensus       230 d~~v~d-----~~G~-~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        230 DQLILE-----TAGV-PQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             CeEEEE-----CCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence            6 5542     1221 3467888999999999988754

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.99  E-value=4.2  Score=30.73  Aligned_cols=103  Identities=20%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      +++||-.|++.|   .....+++.+.  .|++++.++..++...+....     ..++.+...|+.+..     +.    
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~   77 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSK-----YGNIHYVVGDVSSTESARNVIEKAAK   77 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEECCCCCHHHHHHHHHHHHH
Confidence            568888888643   22333444454  899999988766655444332     225777888887532     00    


Q ss_pred             -CCceeEEEecccccccC---C--------------hHHHHHHHHHhccCCcEEEEEEec
Q 026688          130 -SSSIDAVHAGAAIHCWS---S--------------PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       130 -~~~~D~i~~~~~l~~~~---~--------------~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                       -+..|.++.........   +              +...++.+.+.++++|.+++....
T Consensus        78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  137 (238)
T PRK05786         78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM  137 (238)
T ss_pred             HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence             13468887654322110   0              113356666777788877776543

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=91.83  E-value=0.82  Score=32.50  Aligned_cols=55  Identities=13%  Similarity=0.086  Sum_probs=32.2

Q ss_pred             EecCCCc--hHHHHHH--HcCCCceEEEEeCCHHHHHHHHHH--hhhcCCCCCCCeeEEeccc
Q 026688           67 DASCGSG--LFSRIFA--KSGLFSLVVALDYSENMLKQCYEF--VQQESNFPKENFLLVRADI  123 (235)
Q Consensus        67 diG~G~G--~~~~~l~--~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~d~  123 (235)
                      |||++.|  .....+.  ..++...++++|++|...+..+++  +.....  ...+++.....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~--~~~~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK--DGEVEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT--STTGGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC--CceEEEEEeec
Confidence            8999999  6655553  456677999999999999998888  544321  12355554443

; PDB: 2PY6_A.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=91.81  E-value=1.9  Score=34.80  Aligned_cols=94  Identities=20%  Similarity=0.288  Sum_probs=57.0

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---ccccCCCCCCceeEE
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISRLPFASSSIDAV  136 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~D~i  136 (235)
                      ++.+||..|+|. |..+..+++......+++++.++...+.+++. .      . . .++..   ++.......+.+|++
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g------~-~-~vi~~~~~~~~~~~~~~~~vd~v  235 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-G------A-D-ETVNLARDPLAAYAADKGDFDVV  235 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C------C-C-EEEcCCchhhhhhhccCCCccEE
Confidence            678899988875 66666676654222789999888877765542 1      1 0 11111   111111112458998


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +.....      ...++.+.+.|+++|.++...
T Consensus       236 ld~~g~------~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         236 FEASGA------PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             EECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence            853321      235778899999999988654

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=91.78  E-value=1.3  Score=35.00  Aligned_cols=90  Identities=19%  Similarity=0.223  Sum_probs=56.1

Q ss_pred             CCeEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-cccccCCCCCCceeEEEe
Q 026688           62 GGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVHA  138 (235)
Q Consensus        62 ~~~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~i~~  138 (235)
                      ..+|+-+|.|.  |.++..+.+.+....+++.|.+...++.+...          .+.... .+....  .....|+|+.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~~~--~~~~aD~Viv   70 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGLAE--AAAEADLVIV   70 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----------Ccccccccchhhh--hcccCCEEEE
Confidence            35788899885  56677778888877889999988877777642          222221 111111  2345799986


Q ss_pred             cccccccCChHHHHHHHHHhccCCcEEE
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      .--+..   ...+++++...|+||..+.
T Consensus        71 avPi~~---~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          71 AVPIEA---TEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             eccHHH---HHHHHHHhcccCCCCCEEE
Confidence            433332   2466777777777765554

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=91.77  E-value=2  Score=34.31  Aligned_cols=90  Identities=20%  Similarity=0.217  Sum_probs=51.2

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ..+|.-||+|. | .++..+.+.+....|+++|.+++.++.+++.    +    .... ...+..+.   ....|+|+..
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g----~~~~-~~~~~~~~---~~~aDvViia   73 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----G----LGDR-VTTSAAEA---VKGADLVILC   73 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----C----CCce-ecCCHHHH---hcCCCEEEEC
Confidence            36799999986 3 3444555555334799999999877666531    1    0111 11222111   1357888865


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      -....   ...+++.+...+++++.++
T Consensus        74 vp~~~---~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         74 VPVGA---SGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             CCHHH---HHHHHHHHHhhCCCCCEEE
Confidence            43321   1345666767778876554

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=91.65  E-value=0.79  Score=35.69  Aligned_cols=77  Identities=19%  Similarity=0.221  Sum_probs=44.7

Q ss_pred             HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHH
Q 026688           76 SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEI  155 (235)
Q Consensus        76 ~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~  155 (235)
                      +..+.+.++..+|+|+|.++..++.+.+.         .-+.-...+...    -..+|+|+..-.+..   ...+++++
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~---------g~~~~~~~~~~~----~~~~DlvvlavP~~~---~~~~l~~~   65 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAALEL---------GIIDEASTDIEA----VEDADLVVLAVPVSA---IEDVLEEI   65 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHHHHT---------TSSSEEESHHHH----GGCCSEEEE-S-HHH---HHHHHHHH
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHHHHC---------CCeeeccCCHhH----hcCCCEEEEcCCHHH---HHHHHHHh
Confidence            56788888888999999999998888652         112222222111    134699996544332   23566667


Q ss_pred             HHhccCCcEEEEE
Q 026688          156 SRVLRPGGVFVGT  168 (235)
Q Consensus       156 ~~~L~pgG~li~~  168 (235)
                      ...+++|+.+.=.
T Consensus        66 ~~~~~~~~iv~Dv   78 (258)
T PF02153_consen   66 APYLKPGAIVTDV   78 (258)
T ss_dssp             HCGS-TTSEEEE-
T ss_pred             hhhcCCCcEEEEe
Confidence            7767666555533

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.55  E-value=3.3  Score=30.51  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=61.5

Q ss_pred             HHHhhcCCCCCCeEEEecCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      .+........++++|-+|.- +|.+...++..  ..+|+.+|+.|.+-...           ..+++|...    ..+..
T Consensus        35 ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~l-----------p~~v~Fr~~----~~~~~   97 (254)
T COG4017          35 AIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFL-----------PNNVKFRNL----LKFIR   97 (254)
T ss_pred             HhhhhhcccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcC-----------CCCccHhhh----cCCCC
Confidence            34433333447899999985 57777666654  34999999999764332           234555433    23346


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +.+|+|+-...+.-.. |     +..+-+.| +.+++.++..+
T Consensus        98 G~~DlivDlTGlGG~~-P-----e~L~~fnp-~vfiVEdP~gn  133 (254)
T COG4017          98 GEVDLIVDLTGLGGIE-P-----EFLAKFNP-KVFIVEDPKGN  133 (254)
T ss_pred             CceeEEEeccccCCCC-H-----HHHhccCC-ceEEEECCCCC
Confidence            8899999877666432 2     34455566 57777777653

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=91.35  E-value=1  Score=37.16  Aligned_cols=53  Identities=8%  Similarity=-0.097  Sum_probs=38.0

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhh
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  106 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~  106 (235)
                      .-.+.++..++.+||-|++|....+.. +...| .+|++||++|..+...+=+++
T Consensus        26 vD~~aL~i~~~d~vl~ItSaG~N~L~y-L~~~P-~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   26 VDMEALNIGPDDRVLTITSAGCNALDY-LLAGP-KRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHHHHhCCCCCCeEEEEccCCchHHHH-HhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence            345567777789999998775554444 44555 599999999988877665444

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=91.34  E-value=4.8  Score=32.59  Aligned_cols=107  Identities=17%  Similarity=0.133  Sum_probs=65.7

Q ss_pred             HHHhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec----ccccC
Q 026688           52 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA----DISRL  126 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~~~~  126 (235)
                      .+.+..+..++.+|.-+|||. |-..+.-++..--..++++|+++.-++.|++.=         -.+++..    |+-+.
T Consensus       176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fG---------AT~~vn~~~~~~vv~~  246 (366)
T COG1062         176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFG---------ATHFVNPKEVDDVVEA  246 (366)
T ss_pred             HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcC---------CceeecchhhhhHHHH
Confidence            344555667788999999976 555555455433458999999999999998732         2223222    12110


Q ss_pred             --CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          127 --PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       127 --~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                        .......|..+     +...+. ..++....++.++|..++.-....
T Consensus       247 i~~~T~gG~d~~~-----e~~G~~-~~~~~al~~~~~~G~~v~iGv~~~  289 (366)
T COG1062         247 IVELTDGGADYAF-----ECVGNV-EVMRQALEATHRGGTSVIIGVAGA  289 (366)
T ss_pred             HHHhcCCCCCEEE-----EccCCH-HHHHHHHHHHhcCCeEEEEecCCC
Confidence              12223455554     333333 367888888888998888665443

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=91.19  E-value=0.91  Score=37.16  Aligned_cols=124  Identities=10%  Similarity=0.030  Sum_probs=79.3

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHH---HHHh----hhcCCCCCCCeeEEe
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC---YEFV----QQESNFPKENFLLVR  120 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a---~~~~----~~~~~~~~~~~~~~~  120 (235)
                      +.+..+.+.+...+...-.|+|+|-|.....++..+....-.|+++....-+.+   ++..    ...+.. ...++.+.
T Consensus       179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~-~~~~~~i~  257 (419)
T KOG3924|consen  179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK-PNKIETIH  257 (419)
T ss_pred             HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC-cCceeecc
Confidence            445556677778888999999999999999888876656677887754322222   2211    122211 23467777


Q ss_pred             cccccCC---CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          121 ADISRLP---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       121 ~d~~~~~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +++....   .-....++|+++.+...- +...-+.++..-+++|-+++-..+...
T Consensus       258 gsf~~~~~v~eI~~eatvi~vNN~~Fdp-~L~lr~~eil~~ck~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  258 GSFLDPKRVTEIQTEATVIFVNNVAFDP-ELKLRSKEILQKCKDGTRIISSKPLVP  312 (419)
T ss_pred             cccCCHHHHHHHhhcceEEEEecccCCH-HHHHhhHHHHhhCCCcceEeccccccc
Confidence            7776532   112467888887776632 222335588999999999987666543

>PLN02827 Alcohol dehydrogenase-like

Probab=91.19  E-value=4.3  Score=33.51  Aligned_cols=98  Identities=14%  Similarity=0.136  Sum_probs=57.4

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-----cccc-C-CCC
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-----DISR-L-PFA  129 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-----d~~~-~-~~~  129 (235)
                      ...++.+||-.|+|. |..+..+++..-...++++|.++.-.+.+++.    +   . . .++..     +... + ...
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----G---a-~-~~i~~~~~~~~~~~~v~~~~  260 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----G---V-T-DFINPNDLSEPIQQVIKRMT  260 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C---C-c-EEEcccccchHHHHHHHHHh
Confidence            445688999999865 66666666654223588999888877777542    1   1 1 11111     1111 0 011


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                      .+.+|+|+-...     . ...+....+++++| |.+++...
T Consensus       261 ~~g~d~vid~~G-----~-~~~~~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        261 GGGADYSFECVG-----D-TGIATTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             CCCCCEEEECCC-----C-hHHHHHHHHhhccCCCEEEEECC
Confidence            225888873221     1 23577888899998 99987543

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=91.12  E-value=0.73  Score=35.86  Aligned_cols=47  Identities=17%  Similarity=0.063  Sum_probs=35.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-----CCceEEEEeCCH
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSE   95 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~~v~~~D~s~   95 (235)
                      ++..+.+.--..++..++|+|||.|.++..+++..     +...+..||...
T Consensus         6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen    6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            34444443334557899999999999999998876     456899999854

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.94  E-value=1.1  Score=35.44  Aligned_cols=102  Identities=13%  Similarity=0.127  Sum_probs=56.3

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCC-------CCCeeEEecccccC
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFP-------KENFLLVRADISRL  126 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~-------~~~~~~~~~d~~~~  126 (235)
                      ++|.-||+|. | ..+..+++.+.  .|+.+|.+++.++.+.++....       +...       ..+++ ...+..+ 
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~-   77 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKA-   77 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHH-
Confidence            3688899985 3 45556666665  8999999999998877643211       0000       00122 1222221 


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                        .....|+|+..-. ....-...++.++.+.++|+..+.....+
T Consensus        78 --~~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tSt  119 (288)
T PRK09260         78 --AVADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTST  119 (288)
T ss_pred             --hhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence              1245688884321 11111135677788888887665544433

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=90.79  E-value=6.1  Score=32.05  Aligned_cols=102  Identities=19%  Similarity=0.276  Sum_probs=58.9

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C-CCCCc
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P-FASSS  132 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~  132 (235)
                      ....++.+||-.|+|. |..+..+++......++++|.++...+.+++.    +.  ..-+.....+... . . .....
T Consensus       162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~--~~~v~~~~~~~~~~i~~~~~~~~  235 (351)
T cd08285         162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GA--TDIVDYKNGDVVEQILKLTGGKG  235 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC--ceEecCCCCCHHHHHHHHhCCCC
Confidence            3445678899988764 66666666664323589999988777766642    10  0001111111100 0 1 12346


Q ss_pred             eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +|+++....     . ...+..+.+.|+++|.++....
T Consensus       236 ~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         236 VDAVIIAGG-----G-QDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             CcEEEECCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence            898884221     1 2457888999999999886543

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=90.72  E-value=0.52  Score=38.86  Aligned_cols=61  Identities=15%  Similarity=0.207  Sum_probs=50.5

Q ss_pred             CCCeeEEecccccC--CCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          113 KENFLLVRADISRL--PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       113 ~~~~~~~~~d~~~~--~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ..++++.+.++.+.  ..+.+++|.++......++++.  .+.++++.+.++|||.+++-.....
T Consensus       274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            45899999999874  2457899999999999988765  4889999999999999999776543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK08265 short chain dehydrogenase; Provisional

Probab=90.71  E-value=5.3  Score=30.88  Aligned_cols=72  Identities=17%  Similarity=0.117  Sum_probs=43.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   .++..+++.+.  +|+.++.++..++...+.+       ..++.++.+|+.+..     +.    
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~~   76 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVVA   76 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence            567888886543   23344555555  8999999876555444332       235777888887532     00    


Q ss_pred             -CCceeEEEecccc
Q 026688          130 -SSSIDAVHAGAAI  142 (235)
Q Consensus       130 -~~~~D~i~~~~~l  142 (235)
                       -+..|+++.+...
T Consensus        77 ~~g~id~lv~~ag~   90 (261)
T PRK08265         77 RFGRVDILVNLACT   90 (261)
T ss_pred             HhCCCCEEEECCCC
Confidence             1467998876543

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=90.59  E-value=6.5  Score=31.48  Aligned_cols=99  Identities=11%  Similarity=0.001  Sum_probs=59.1

Q ss_pred             hcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEec-cccc-C-CCC
Q 026688           56 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRA-DISR-L-PFA  129 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~-d~~~-~-~~~  129 (235)
                      .....++.+||-.|+  |.|..+..+++.. .+++++++.+++-.+.+++ +.      ... +..... +..+ . ...
T Consensus       133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~-lG------a~~vi~~~~~~~~~~~~~~~~  204 (325)
T TIGR02825       133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKK-LG------FDVAFNYKTVKSLEETLKKAS  204 (325)
T ss_pred             HhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cC------CCEEEeccccccHHHHHHHhC
Confidence            344556789998884  3577777777764 3589999988887777754 21      111 111100 1111 0 111


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .+.+|+++-.     ...  ..+....++++++|.++...
T Consensus       205 ~~gvdvv~d~-----~G~--~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       205 PDGYDCYFDN-----VGG--EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             CCCeEEEEEC-----CCH--HHHHHHHHHhCcCcEEEEec
Confidence            2468888832     221  24578899999999999754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.96  E-value=1.5  Score=34.81  Aligned_cols=96  Identities=15%  Similarity=0.253  Sum_probs=57.0

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCCC-------CCeeEEecccccC
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFPK-------ENFLLVRADISRL  126 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~-------~~~~~~~~d~~~~  126 (235)
                      .+|--||+|+ | ..+..++..+.  .|+.+|.+++.++.+.+++...       +....       .+++ ...|... 
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~-   81 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD-   81 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH-
Confidence            4788999996 3 45556666665  9999999999998877664321       10000       0111 2233321 


Q ss_pred             CCCCCceeEEEecccccccCCh----HHHHHHHHHhc-cCCcEEEEEEe
Q 026688          127 PFASSSIDAVHAGAAIHCWSSP----STGVAEISRVL-RPGGVFVGTTY  170 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L-~pgG~li~~~~  170 (235)
                         -...|+|+     +.+++.    ..++..+.+++ +|+..+.-.+.
T Consensus        82 ---~~~~d~Vi-----Eav~E~~~~K~~l~~~l~~~~~~~~~il~snTS  122 (286)
T PRK07819         82 ---FADRQLVI-----EAVVEDEAVKTEIFAELDKVVTDPDAVLASNTS  122 (286)
T ss_pred             ---hCCCCEEE-----EecccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence               24568777     333332    46778888888 67665554333

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=89.90  E-value=8.2  Score=30.88  Aligned_cols=99  Identities=17%  Similarity=0.093  Sum_probs=58.1

Q ss_pred             cCCCCCCeEEEecCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeE
Q 026688           57 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  135 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  135 (235)
                      ....++.+||-.|+| .|..+..+++.. ..++++++.++...+.+++. ..     ..-+.....+... . ..+.+|+
T Consensus       158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g~-----~~~~~~~~~~~~~-~-~~~~~d~  228 (330)
T cd08245         158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL-GA-----DEVVDSGAELDEQ-A-AAGGADV  228 (330)
T ss_pred             hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh-CC-----cEEeccCCcchHH-h-ccCCCCE
Confidence            344557889999887 466666666653 34899999998887776432 11     0000000001100 0 1245888


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ++....     . ...+..+.+.|+++|.++....
T Consensus       229 vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         229 ILVTVV-----S-GAAAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             EEECCC-----c-HHHHHHHHHhcccCCEEEEECC
Confidence            874321     1 2357788899999998887643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=89.89  E-value=8.5  Score=30.70  Aligned_cols=99  Identities=15%  Similarity=0.105  Sum_probs=59.2

Q ss_pred             hcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEeccccc-C-CCCC
Q 026688           56 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR-L-PFAS  130 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~-~-~~~~  130 (235)
                      .....++.+||-.|+  |.|..+..+++.. .+++++++.+++-.+.+++ +.      ... +.....+..+ . ....
T Consensus       138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~-~G------a~~vi~~~~~~~~~~v~~~~~  209 (329)
T cd08294         138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE-LG------FDAVFNYKTVSLEEALKEAAP  209 (329)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cC------CCEEEeCCCccHHHHHHHHCC
Confidence            344556789988884  3477777777764 4589999988887777765 21      111 1111111111 0 1112


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ..+|+|+-..     .  ...+....+.++++|.++...
T Consensus       210 ~gvd~vld~~-----g--~~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         210 DGIDCYFDNV-----G--GEFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             CCcEEEEECC-----C--HHHHHHHHHhhccCCEEEEEc
Confidence            4688888421     1  145788899999999998654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=89.69  E-value=7  Score=31.92  Aligned_cols=97  Identities=16%  Similarity=0.089  Sum_probs=54.0

Q ss_pred             CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      .++.+||-.|+|. |..+..+++.. ...+++++.+++..+.+.+.+..       ...+...+...+......+|+++-
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga-------~~~i~~~~~~~~~~~~~~~D~vid  250 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGA-------DDYLVSSDAAEMQEAADSLDYIID  250 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCC-------cEEecCCChHHHHHhcCCCcEEEE
Confidence            4577888888764 66666666654 34788888877655554433211       101111110111000124787773


Q ss_pred             cccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .     ... ...+..+.+.++++|.++....
T Consensus       251 ~-----~g~-~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        251 T-----VPV-FHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             C-----CCc-hHHHHHHHHHhccCCEEEEECC
Confidence            2     211 2457788899999999887654

>PRK07109 short chain dehydrogenase; Provisional

Probab=89.58  E-value=9.7  Score=30.86  Aligned_cols=75  Identities=23%  Similarity=0.241  Sum_probs=47.8

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C---------
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F---------  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~---------  128 (235)
                      +++||-.|++.|   .++..+++++.  +|+.++.+++.++...+.+...    ..++.++..|+.+.. .         
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~----g~~~~~v~~Dv~d~~~v~~~~~~~~~   81 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAA----GGEALAVVADVADAEAVQAAADRAEE   81 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            467888887554   22334555554  8999999888777666655443    235777888886532 0         


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      .-+..|+++.+...
T Consensus        82 ~~g~iD~lInnAg~   95 (334)
T PRK07109         82 ELGPIDTWVNNAMV   95 (334)
T ss_pred             HCCCCCEEEECCCc
Confidence            01468999876544

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=89.51  E-value=10  Score=31.17  Aligned_cols=102  Identities=13%  Similarity=0.069  Sum_probs=59.1

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe--ccccc-C-CCCCC
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR--ADISR-L-PFASS  131 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~d~~~-~-~~~~~  131 (235)
                      ....++.+||-.|+|. |..+..+++..-..+|+++|.++.-++.+++. ..     ..-+....  .+..+ . ....+
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga-----~~~i~~~~~~~~~~~~v~~~~~~  254 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GA-----TDCVNPNDYDKPIQEVIVEITDG  254 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC-----CeEEcccccchhHHHHHHHHhCC
Confidence            3455688999999875 66666677664222799999999888887552 11     00011110  01100 0 01113


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                      .+|+++-.     ... ...+....+.++++ |.+++...
T Consensus       255 g~d~vid~-----~G~-~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       255 GVDYSFEC-----IGN-VNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             CCCEEEEC-----CCC-HHHHHHHHHHhhcCCCeEEEEec
Confidence            57888732     222 24577788899886 98887654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02494 adenosylhomocysteinase

Probab=89.49  E-value=3.3  Score=35.21  Aligned_cols=104  Identities=9%  Similarity=0.014  Sum_probs=62.8

Q ss_pred             CHHHHHHHHhhcCC-CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           46 PEKEFELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        46 ~~~~~~~i~~~~~~-~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      .+..++.+....+. ..+++|+-+|+|. |......++.. .++|+++|.++.-...+...          ...+  .++
T Consensus       237 gqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~----------G~~v--v~l  303 (477)
T PLN02494        237 RHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALME----------GYQV--LTL  303 (477)
T ss_pred             cccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc----------CCee--ccH
Confidence            35556666666554 4579999999997 65555555433 45899999988644343321          1111  122


Q ss_pred             ccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+.   -...|+|+....-.     ..+.....+.+++||.|+-...
T Consensus       304 eEa---l~~ADVVI~tTGt~-----~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        304 EDV---VSEADIFVTTTGNK-----DIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             HHH---HhhCCEEEECCCCc-----cchHHHHHhcCCCCCEEEEcCC
Confidence            221   13569888632222     2234678889999999887654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.37  E-value=1.6  Score=36.06  Aligned_cols=69  Identities=17%  Similarity=0.158  Sum_probs=47.4

Q ss_pred             CeEEEecCCC-chHHHHH-HHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C--CCCceeEEE
Q 026688           63 GNIIDASCGS-GLFSRIF-AKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F--ASSSIDAVH  137 (235)
Q Consensus        63 ~~vLdiG~G~-G~~~~~l-~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~--~~~~~D~i~  137 (235)
                      .+||-+|||. |...... ++++ +.+|+..|.+.+..+.+....       ..+++....|+.+.+ .  --..+|+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~-------~~~v~~~~vD~~d~~al~~li~~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELI-------GGKVEALQVDAADVDALVALIKDFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhc-------cccceeEEecccChHHHHHHHhcCCEEE
Confidence            5799999975 5444443 4444 369999999988887776543       236888888987753 0  114569988


Q ss_pred             ec
Q 026688          138 AG  139 (235)
Q Consensus       138 ~~  139 (235)
                      ..
T Consensus        74 n~   75 (389)
T COG1748          74 NA   75 (389)
T ss_pred             Ee
Confidence            64

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=89.19  E-value=8.5  Score=31.26  Aligned_cols=101  Identities=20%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---cccc-CC--CC
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-LP--FA  129 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~-~~--~~  129 (235)
                      ....++.+||-.|+|. |..+..+++.. ...++++|.+++-++.+++. ...     .-+.....   ++.+ ..  ..
T Consensus       162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~-Ga~-----~~i~~~~~~~~~~~~~~~~~t~  234 (349)
T TIGR03201       162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF-GAD-----LTLNPKDKSAREVKKLIKAFAK  234 (349)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh-CCc-----eEecCccccHHHHHHHHHhhcc
Confidence            3445678999999976 66766676664 34899999999888877542 110     00111111   1100 00  01


Q ss_pred             CCcee----EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          130 SSSID----AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 ~~~~D----~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ...+|    +|+     ..... ...+..+.++|++||.+++...
T Consensus       235 ~~g~d~~~d~v~-----d~~g~-~~~~~~~~~~l~~~G~iv~~G~  273 (349)
T TIGR03201       235 ARGLRSTGWKIF-----ECSGS-KPGQESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             cCCCCCCcCEEE-----ECCCC-hHHHHHHHHHHhcCCeEEEECc
Confidence            12344    444     22222 2456778889999999987654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=89.16  E-value=8.2  Score=30.88  Aligned_cols=100  Identities=17%  Similarity=0.128  Sum_probs=56.0

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHH--hhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      .+|+-+|+|. | .++..|.+.+.  .|+.++.+++.++..++.  +.....  .....+ ..... .+.+.+.+|+|+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~--g~~~~~-~~~~~-~~~~~~~~D~viv   76 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQ--GQASLY-AIPAE-TADAAEPIHRLLL   76 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeC--Ccceee-ccCCC-CcccccccCEEEE
Confidence            5799999996 4 56667777665  899999877655555432  111000  001111 11111 1112357898885


Q ss_pred             cccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .-=-+   +....++.+...+.++..++.....
T Consensus        77 ~vK~~---~~~~al~~l~~~l~~~t~vv~lQNG  106 (305)
T PRK05708         77 ACKAY---DAEPAVASLAHRLAPGAELLLLQNG  106 (305)
T ss_pred             ECCHH---hHHHHHHHHHhhCCCCCEEEEEeCC
Confidence            32112   2346788888899998876655443

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=89.10  E-value=8.8  Score=29.80  Aligned_cols=97  Identities=19%  Similarity=0.203  Sum_probs=58.0

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  134 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  134 (235)
                      ....++.+||-.|+|. |..+..+++.. ... +++++.+++..+.+++.- .     ...+  .  ...........+|
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g-~-----~~~~--~--~~~~~~~~~~~~d  161 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALG-P-----ADPV--A--ADTADEIGGRGAD  161 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcC-C-----Cccc--c--ccchhhhcCCCCC
Confidence            4455678899998865 66666666654 235 999999888877666531 0     0011  0  0000011234688


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +++....-      ...+....+.++++|.++....
T Consensus       162 ~vl~~~~~------~~~~~~~~~~l~~~g~~~~~g~  191 (277)
T cd08255         162 VVIEASGS------PSALETALRLLRDRGRVVLVGW  191 (277)
T ss_pred             EEEEccCC------hHHHHHHHHHhcCCcEEEEEec
Confidence            88843211      2356788889999999886543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2

Probab=89.08  E-value=4.5  Score=26.22  Aligned_cols=75  Identities=13%  Similarity=0.050  Sum_probs=46.4

Q ss_pred             cccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCC-----ceeecCHHHHHHHHHHc
Q 026688          139 GAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG-----SYTFLSEREIEDLCRAC  211 (235)
Q Consensus       139 ~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~  211 (235)
                      ..++-|.+..  .+.+.++....+  |.++++.-.      ..++..-++..-..++.     .......+++.+.++++
T Consensus         2 mDvLIHYp~~d~~~~l~~La~~t~--~~~ifTfAP------~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~   73 (97)
T PF07109_consen    2 MDVLIHYPAEDAAQMLAHLASRTR--GSLIFTFAP------RTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAA   73 (97)
T ss_pred             cceEeccCHHHHHHHHHHHHHhcc--CcEEEEECC------CCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhC
Confidence            3455666654  477777777655  677776543      23344333332222222     24567889999999999


Q ss_pred             CCceeEEEee
Q 026688          212 GLVDFKCTRN  221 (235)
Q Consensus       212 Gf~~~~~~~~  221 (235)
                      ||++.+....
T Consensus        74 g~~~~r~~ri   83 (97)
T PF07109_consen   74 GWRIGRTERI   83 (97)
T ss_pred             CCeeeecccc
Confidence            9998776643

1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=89.03  E-value=10  Score=30.32  Aligned_cols=99  Identities=15%  Similarity=0.112  Sum_probs=59.2

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----CCC
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFA  129 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~  129 (235)
                      .....++.+||..|+|. |..+..+++... .+ +++++.+++..+.+++. .      . . .++..+-...    ...
T Consensus       154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~~-g------~-~-~~~~~~~~~~~~~~~~~  223 (334)
T cd08234         154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKKL-G------A-T-ETVDPSREDPEAQKEDN  223 (334)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHh-C------C-e-EEecCCCCCHHHHHHhc
Confidence            34445678999998753 666666666642 34 88899888877776442 1      1 1 1111111110    112


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+.+|+++....      ....+..+.+.|+++|.++....
T Consensus       224 ~~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~  258 (334)
T cd08234         224 PYGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV  258 (334)
T ss_pred             CCCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence            356899985321      12467788899999999887543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=89.01  E-value=1.1  Score=35.20  Aligned_cols=47  Identities=9%  Similarity=0.087  Sum_probs=35.3

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  107 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~  107 (235)
                      ...+.+|.-+|+|.-..+..+.+.-  ++|.++|+++..+...+-+++.
T Consensus        61 ~g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA  107 (414)
T COG5379          61 LGIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAA  107 (414)
T ss_pred             cCCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHH
Confidence            3447899999999776777776653  4999999999888776655543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.01  E-value=0.77  Score=36.33  Aligned_cols=98  Identities=17%  Similarity=0.157  Sum_probs=54.6

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--------CCCC-------CCCeeEEeccccc
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SNFP-------KENFLLVRADISR  125 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~-------~~~~~~~~~d~~~  125 (235)
                      .+|.-+|+|. | .++..+++.+.  .|+.+|.+++.++.+++.+...        ....       ..++. ...|..+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~   80 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAE   80 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHH
Confidence            4788899986 3 34445555555  8999999999888887653211        0000       01222 2233322


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEE
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      .   ....|+|+..-. +...-...+++++...++++..|..
T Consensus        81 a---~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~s  118 (287)
T PRK08293         81 A---VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFAT  118 (287)
T ss_pred             H---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence            1   245688884321 1111124667888888877765533

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=88.93  E-value=8.1  Score=31.12  Aligned_cols=99  Identities=18%  Similarity=0.203  Sum_probs=56.2

Q ss_pred             CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C--CCCCCcee
Q 026688           59 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L--PFASSSID  134 (235)
Q Consensus        59 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~~~D  134 (235)
                      ..++.+||..|+|. |..+..+++......+++++.++...+.+++.- .     ..-+.....+..+ +  ....+.+|
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~-----~~vi~~~~~~~~~~i~~~~~~~~~d  238 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A-----TDIINPKNGDIVEQILELTGGRGVD  238 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C-----cEEEcCCcchHHHHHHHHcCCCCCc
Confidence            34577888877653 666666766643236888888877666655421 0     0001111111111 0  01235689


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +++....-      ...+....+.|+++|.++...
T Consensus       239 ~vld~~g~------~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         239 CVIEAVGF------EETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             EEEEccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence            88853221      246788889999999988653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK12939 short chain dehydrogenase; Provisional

Probab=88.89  E-value=5.6  Score=30.25  Aligned_cols=74  Identities=15%  Similarity=0.149  Sum_probs=45.5

Q ss_pred             CCeEEEecCCCchHHHH----HHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           62 GGNIIDASCGSGLFSRI----FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      ++++|-.|++ |..+..    +++++.  ++++++.++..+....+.+...    ..++.+...|+.+..     +.   
T Consensus         7 ~~~vlItGa~-g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~   79 (250)
T PRK12939          7 GKRALVTGAA-RGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAA----GGRAHAIAADLADPASVQRFFDAAA   79 (250)
T ss_pred             CCEEEEeCCC-ChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            5678877764 334433    444554  8888998887666655554432    236788888987532     10   


Q ss_pred             --CCceeEEEecccc
Q 026688          130 --SSSIDAVHAGAAI  142 (235)
Q Consensus       130 --~~~~D~i~~~~~l  142 (235)
                        -+..|+++.+...
T Consensus        80 ~~~~~id~vi~~ag~   94 (250)
T PRK12939         80 AALGGLDGLVNNAGI   94 (250)
T ss_pred             HHcCCCCEEEECCCC
Confidence              1468998876543

>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase

Probab=88.62  E-value=3.1  Score=24.97  Aligned_cols=58  Identities=17%  Similarity=0.161  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEE
Q 026688          148 PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF  227 (235)
Q Consensus       148 ~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  227 (235)
                      |--.+++..+-+++|..|.+..-..                          -+..++..++++.|++++.....+..+.+
T Consensus        13 Pll~~~~~l~~l~~G~~l~v~~d~~--------------------------~~~~di~~~~~~~g~~~~~~~~~~~~~~i   66 (70)
T PF01206_consen   13 PLLKAKKALKELPPGEVLEVLVDDP--------------------------AAVEDIPRWCEENGYEVVEVEEEGGEYRI   66 (70)
T ss_dssp             HHHHHHHHHHTSGTT-EEEEEESST--------------------------THHHHHHHHHHHHTEEEEEEEESSSSEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEEECCc--------------------------cHHHHHHHHHHHCCCEEEEEEEeCCEEEE
Confidence            3344667777778887776655432                          24578999999999998888766665555


Q ss_pred             EEec
Q 026688          228 TATK  231 (235)
Q Consensus       228 ~~~k  231 (235)
                      ..+|
T Consensus        67 ~I~K   70 (70)
T PF01206_consen   67 LIRK   70 (70)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            5544

This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=88.56  E-value=4  Score=32.14  Aligned_cols=84  Identities=17%  Similarity=0.090  Sum_probs=49.7

Q ss_pred             eEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           64 NIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        64 ~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +|.-||+|.  |.++..+.+.+.  +|+++|.++..++.+.+.    +     .+.....+..    .....|+|+..-.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~----g-----~~~~~~~~~~----~~~~aDlVilavp   66 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER----G-----LVDEASTDLS----LLKDCDLVILALP   66 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC----C-----CcccccCCHh----HhcCCCEEEEcCC
Confidence            577788885  456666666654  899999999887776542    1     1111111111    1245788886433


Q ss_pred             ccccCChHHHHHHHHHhccCCcEE
Q 026688          142 IHCWSSPSTGVAEISRVLRPGGVF  165 (235)
Q Consensus       142 l~~~~~~~~~l~~~~~~L~pgG~l  165 (235)
                      ...   ..++++++...++|+..+
T Consensus        67 ~~~---~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         67 IGL---LLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             HHH---HHHHHHHHHHhCCCCcEE
Confidence            221   135677777777776433

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.50  E-value=11  Score=30.08  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=77.0

Q ss_pred             CCCeEEEecCCCchHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHhhhcCC-------C------------CCCCeeEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESN-------F------------PKENFLLV  119 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~-------~------------~~~~~~~~  119 (235)
                      ....|+.+|||.-.+...+...+  ....++=+|..+.....+.. ....++       .            ..++....
T Consensus        87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~i-k~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~  165 (335)
T KOG2918|consen   87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISI-KRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI  165 (335)
T ss_pred             CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhh-cccCchhhhhhccccccccccCcceeccCceeee
Confidence            36789999999998888888876  44566667766654444411 111000       0            00112222


Q ss_pred             ecccccCC----------CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH
Q 026688          120 RADISRLP----------FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ  187 (235)
Q Consensus       120 ~~d~~~~~----------~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~  187 (235)
                      -+|+.++.          ...+-.-++++=.++-++...  ...++.+.+.... +.++.-+...    ...+|.+-..+
T Consensus       166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~-a~fv~YEQi~----~~D~Fg~vM~~  240 (335)
T KOG2918|consen  166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN-AHFVNYEQIN----PNDRFGKVMLA  240 (335)
T ss_pred             ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc-ccEEEEeccC----CCChHHHHHHH
Confidence            23332210          000111122222233333322  2455666555544 4444444433    22333333333


Q ss_pred             hHh----hcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          188 NMM----QISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       188 ~~~----~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      .+.    ...+-..+-|.+..+..+.++||+.+...
T Consensus       241 nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~  276 (335)
T KOG2918|consen  241 NLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAV  276 (335)
T ss_pred             HHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehh
Confidence            322    23344667889999999999999876654

>PRK08324 short chain dehydrogenase; Validated

Probab=88.37  E-value=8.5  Score=34.65  Aligned_cols=103  Identities=20%  Similarity=0.214  Sum_probs=60.0

Q ss_pred             CCCeEEEecCCCc--h-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           61 LGGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        61 ~~~~vLdiG~G~G--~-~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      .++++|-.|++.|  . ++..+++.+.  .|+.+|.++..++.+.+.+..     ..++.++..|+.+..     +.   
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~-----~~~v~~v~~Dvtd~~~v~~~~~~~~  493 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGG-----PDRALGVACDVTDEAAVQAAFEEAA  493 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhc-----cCcEEEEEecCCCHHHHHHHHHHHH
Confidence            3578888886433  2 2334444554  899999998777666554432     125777888876531     10   


Q ss_pred             --CCceeEEEecccccccCC-------------------hHHHHHHHHHhccC---CcEEEEEEe
Q 026688          130 --SSSIDAVHAGAAIHCWSS-------------------PSTGVAEISRVLRP---GGVFVGTTY  170 (235)
Q Consensus       130 --~~~~D~i~~~~~l~~~~~-------------------~~~~l~~~~~~L~p---gG~li~~~~  170 (235)
                        .+.+|+|+.+........                   ...+++.+.+.+++   +|.+++...
T Consensus       494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence              136899997765322110                   12345566666665   577776544

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=88.27  E-value=5.7  Score=32.03  Aligned_cols=100  Identities=15%  Similarity=0.143  Sum_probs=60.0

Q ss_pred             cCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-cccc-C-CCCCC
Q 026688           57 LKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISR-L-PFASS  131 (235)
Q Consensus        57 ~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~  131 (235)
                      ....++.+||-.|+  |.|..+..+++.. .+++++++.+++-.+.+++.+...     .-+..... +..+ . .....
T Consensus       147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~-----~vi~~~~~~~~~~~i~~~~~~  220 (338)
T cd08295         147 CKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFD-----DAFNYKEEPDLDAALKRYFPN  220 (338)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCc-----eeEEcCCcccHHHHHHHhCCC
Confidence            44566889999886  3477777777764 358999998887777776533210     00111111 1111 0 11124


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .+|+|+-.     ..  ...+..+.++|+++|.++...
T Consensus       221 gvd~v~d~-----~g--~~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         221 GIDIYFDN-----VG--GKMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             CcEEEEEC-----CC--HHHHHHHHHHhccCcEEEEec
Confidence            68888842     21  145778899999999998654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.25  E-value=11  Score=29.88  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=56.2

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeE
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  135 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  135 (235)
                      ....++.+||-.|+|. |..+..+++.. ..++++++.+++..+.+++ +..       ...   .+.... .....+|+
T Consensus       151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~-~g~-------~~~---~~~~~~-~~~~~~d~  217 (319)
T cd08242         151 VPITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR-LGV-------ETV---LPDEAE-SEGGGFDV  217 (319)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-cCC-------cEE---eCcccc-ccCCCCCE
Confidence            3445678899887653 44444455443 3479999998888877765 211       110   111111 22356898


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      ++....      ....+..+.+.|+++|.++..
T Consensus       218 vid~~g------~~~~~~~~~~~l~~~g~~v~~  244 (319)
T cd08242         218 VVEATG------SPSGLELALRLVRPRGTVVLK  244 (319)
T ss_pred             EEECCC------ChHHHHHHHHHhhcCCEEEEE
Confidence            885321      123577888899999999873

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK06181 short chain dehydrogenase; Provisional

Probab=88.21  E-value=8.1  Score=29.77  Aligned_cols=73  Identities=21%  Similarity=0.207  Sum_probs=44.0

Q ss_pred             CeEEEecCCCchHHH----HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           63 GNIIDASCGSGLFSR----IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        63 ~~vLdiG~G~G~~~~----~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      +++|-.|+.. .++.    .+++.+.  +|++++.++...+...+.+...    ..++.+...|+.+..     +     
T Consensus         2 ~~vlVtGasg-~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~   74 (263)
T PRK06181          2 KVVIITGASE-GIGRALAVRLARAGA--QLVLAARNETRLASLAQELADH----GGEALVVPTDVSDAEACERLIEAAVA   74 (263)
T ss_pred             CEEEEecCCc-HHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4677666543 3333    3444444  8999999887666555554432    236778888886632     0     


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      ..+..|.|+.+...
T Consensus        75 ~~~~id~vi~~ag~   88 (263)
T PRK06181         75 RFGGIDILVNNAGI   88 (263)
T ss_pred             HcCCCCEEEECCCc
Confidence            01357999876543

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=88.09  E-value=12  Score=30.66  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=58.7

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec--cccc-C-CCCCC
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA--DISR-L-PFASS  131 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~~  131 (235)
                      ....++.+||-.|+|. |..+..+++......|+++|.+++-++.+++. ..     ..-+.....  ++.+ + ....+
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga-----~~~i~~~~~~~~~~~~v~~~~~~  256 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GV-----TEFVNPKDHDKPVQEVIAEMTGG  256 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC-----ceEEcccccchhHHHHHHHHhCC
Confidence            4455688999998864 66666666664323799999999888877542 11     000111100  0100 0 01123


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEec
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTYI  171 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~~  171 (235)
                      .+|+++-.     ... ...+....+.+++| |.+++....
T Consensus       257 ~~d~vid~-----~G~-~~~~~~~~~~~~~~~g~~v~~g~~  291 (369)
T cd08301         257 GVDYSFEC-----TGN-IDAMISAFECVHDGWGVTVLLGVP  291 (369)
T ss_pred             CCCEEEEC-----CCC-hHHHHHHHHHhhcCCCEEEEECcC
Confidence            57888732     211 24567778889996 888876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=88.07  E-value=11  Score=30.90  Aligned_cols=102  Identities=20%  Similarity=0.206  Sum_probs=58.0

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc--ccc-C-CCCCC
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD--ISR-L-PFASS  131 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d--~~~-~-~~~~~  131 (235)
                      ....++.+||-.|+|. |..+..+++......|+++|.++.-++.+++. ...     .-+.....+  +.+ . .....
T Consensus       180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~-----~~i~~~~~~~~~~~~~~~~~~~  253 (365)
T cd08277         180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GAT-----DFINPKDSDKPVSEVIREMTGG  253 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC-----cEeccccccchHHHHHHHHhCC
Confidence            3445678999998864 56666666664322699999998887777542 110     001111100  000 0 01124


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                      .+|+|+-..     .. ...+....+.++++ |.++....
T Consensus       254 g~d~vid~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         254 GVDYSFECT-----GN-ADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CCCEEEECC-----CC-hHHHHHHHHhcccCCCEEEEEcC
Confidence            688888322     11 24577788889885 88887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK07576 short chain dehydrogenase; Provisional

Probab=88.03  E-value=9.9  Score=29.45  Aligned_cols=73  Identities=29%  Similarity=0.378  Sum_probs=43.7

Q ss_pred             CCeEEEecCCCc--h-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G--~-~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|-.|++.|  . +...+++.+.  .|++++.+++.++...+.+...    ..++.++..|+.+..     +     
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~~~~   82 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQA----GPEGLGVSADVRDYAAVEAAFAQIAD   82 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh----CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            568888876432  2 3334454544  8999999887666554444432    224567788886521     0     


Q ss_pred             CCCceeEEEecc
Q 026688          129 ASSSIDAVHAGA  140 (235)
Q Consensus       129 ~~~~~D~i~~~~  140 (235)
                      ..+..|+++.+.
T Consensus        83 ~~~~iD~vi~~a   94 (264)
T PRK07576         83 EFGPIDVLVSGA   94 (264)
T ss_pred             HcCCCCEEEECC
Confidence            013579998764

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=88.03  E-value=5.1  Score=33.67  Aligned_cols=37  Identities=16%  Similarity=0.130  Sum_probs=27.9

Q ss_pred             CeEEEecCCCc--hHHHHHHHcCCCceEEEEeCCHHHHHHH
Q 026688           63 GNIIDASCGSG--LFSRIFAKSGLFSLVVALDYSENMLKQC  101 (235)
Q Consensus        63 ~~vLdiG~G~G--~~~~~l~~~~~~~~v~~~D~s~~~~~~a  101 (235)
                      .+|.-+|.|.-  .++..+++.+.  +|+++|.++..++..
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~--~V~~~D~~~~~v~~l   42 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQK--QVIGVDINQHAVDTI   42 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCC--EEEEEeCCHHHHHHH
Confidence            57888899863  44455667766  899999999887764

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=88.03  E-value=13  Score=30.37  Aligned_cols=98  Identities=18%  Similarity=0.259  Sum_probs=57.9

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---cccc-C-CCCCC
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-L-PFASS  131 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~-~-~~~~~  131 (235)
                      ...++.+||-.|+|. |..+..+++......++++|.++.-.+.+++. .      .  ..++..   ++.+ + .....
T Consensus       183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g------~--~~~i~~~~~~~~~~v~~~~~~  253 (365)
T cd08278         183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-G------A--THVINPKEEDLVAAIREITGG  253 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-C------C--cEEecCCCcCHHHHHHHHhCC
Confidence            345578899888765 66666666664322699999998777766542 1      1  111111   1100 0 01134


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+|+|+-...     . ...+..+.+.++++|.++....
T Consensus       254 ~~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  286 (365)
T cd08278         254 GVDYALDTTG-----V-PAVIEQAVDALAPRGTLALVGA  286 (365)
T ss_pred             CCcEEEECCC-----C-cHHHHHHHHHhccCCEEEEeCc
Confidence            6888884321     1 2357788999999999887543

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=87.94  E-value=8.1  Score=27.78  Aligned_cols=95  Identities=18%  Similarity=0.089  Sum_probs=57.5

Q ss_pred             CCCeEEEecCCCchHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCC---CCceeE
Q 026688           61 LGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFA---SSSIDA  135 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~---~~~~D~  135 (235)
                      ...+|+-|||=+-..  .+.+ ..+..++...|++...-.        .    ..+ .|..-|..+. .++   .++||+
T Consensus        25 ~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~--------~----~~~-~F~fyD~~~p~~~~~~l~~~~d~   89 (162)
T PF10237_consen   25 DDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQ--------F----GGD-EFVFYDYNEPEELPEELKGKFDV   89 (162)
T ss_pred             CCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHh--------c----CCc-ceEECCCCChhhhhhhcCCCceE
Confidence            368999999976433  3333 345568999999874322        1    122 4566666542 111   478999


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      |++.--+-.-.-..+....+.-++++++.+++.+.
T Consensus        90 vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg  124 (162)
T PF10237_consen   90 VVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTG  124 (162)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence            99765552111113555666777788888887654

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=87.92  E-value=9.8  Score=31.57  Aligned_cols=99  Identities=15%  Similarity=0.190  Sum_probs=55.9

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--------------
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--------------  125 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--------------  125 (235)
                      ..+|--+|-|. | -++..+++++.  .|+|+|+++..++...+-          ...+...+...              
T Consensus         9 ~~~I~ViGLGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G----------~~~i~e~~~~~~v~~~v~~g~lraT   76 (436)
T COG0677           9 SATIGVIGLGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRG----------ESYIEEPDLDEVVKEAVESGKLRAT   76 (436)
T ss_pred             ceEEEEEccccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCC----------cceeecCcHHHHHHHHHhcCCceEe
Confidence            36788888886 4 34445666655  999999999887765531          11111111111              


Q ss_pred             -CCCCCCceeEEEec--cccc--ccCCh---HHHHHHHHHhccCCcEEEEEEecc
Q 026688          126 -LPFASSSIDAVHAG--AAIH--CWSSP---STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       126 -~~~~~~~~D~i~~~--~~l~--~~~~~---~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                       .+..-...|+++..  .-+.  +-+|.   ....+.+.+.|++|-.+++.....
T Consensus        77 td~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~  131 (436)
T COG0677          77 TDPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTP  131 (436)
T ss_pred             cChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence             00001245665532  2222  22232   477889999999977776655543

>PRK08267 short chain dehydrogenase; Provisional

Probab=87.86  E-value=9.5  Score=29.35  Aligned_cols=72  Identities=25%  Similarity=0.249  Sum_probs=45.7

Q ss_pred             CeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------C-C-
Q 026688           63 GNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------F-A-  129 (235)
Q Consensus        63 ~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~-~-  129 (235)
                      +++|-.|++.|   .++..+++++.  +|..++.++..++.....+.      ..++.++.+|+.+..        . . 
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~   73 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELG------AGNAWTGALDVTDRAAWDAALADFAAA   73 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            46777777543   23344555554  89999998877666554432      236778888987632        1 0 


Q ss_pred             -CCceeEEEecccc
Q 026688          130 -SSSIDAVHAGAAI  142 (235)
Q Consensus       130 -~~~~D~i~~~~~l  142 (235)
                       .+++|+++.+...
T Consensus        74 ~~~~id~vi~~ag~   87 (260)
T PRK08267         74 TGGRLDVLFNNAGI   87 (260)
T ss_pred             cCCCCCEEEECCCC
Confidence             3467999976554

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=87.77  E-value=16  Score=30.87  Aligned_cols=41  Identities=7%  Similarity=0.071  Sum_probs=27.0

Q ss_pred             CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHH
Q 026688           59 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLK   99 (235)
Q Consensus        59 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~   99 (235)
                      ..++.+|+-+|+|. |......+.......++.++.++.-..
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~  220 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE  220 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence            34578999999986 555444443322247899999876544

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=87.75  E-value=14  Score=30.85  Aligned_cols=104  Identities=24%  Similarity=0.275  Sum_probs=58.1

Q ss_pred             CCCCCeEEEec-CC-CchHHHHHHHcC-C-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec----cccc-C-C-
Q 026688           59 PVLGGNIIDAS-CG-SGLFSRIFAKSG-L-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA----DISR-L-P-  127 (235)
Q Consensus        59 ~~~~~~vLdiG-~G-~G~~~~~l~~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~~~-~-~-  127 (235)
                      ..++.+||-+| +| .|..+..+++.. . ..+|+++|.++.-++.+++..............++..    +..+ . . 
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~  252 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL  252 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence            44567899887 45 477777777753 1 1379999999999888877432100000001111111    1111 0 0 


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      .....+|+++....     . ...+....++++++|.+++.
T Consensus       253 t~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         253 TGGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             hCCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence            12246888884221     1 24577888999988876654

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=87.74  E-value=6.2  Score=30.00  Aligned_cols=66  Identities=14%  Similarity=0.258  Sum_probs=41.8

Q ss_pred             CCeEEEecCCCchH--HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           62 GGNIIDASCGSGLF--SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G~~--~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      +.+||-+|+|.-..  ...|++.+....|++-++++++.+.+.          ..++++...++....+  ..+++|++.
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~----------~~~i~~~~r~~~~~dl--~g~~LViaA   92 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK----------YGNLKLIKGNYDKEFI--KDKHLIVIA   92 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh----------CCCEEEEeCCCChHHh--CCCcEEEEC
Confidence            67999999998544  335666666555555577777655433          3367777776654332  346777753

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.74  E-value=3.6  Score=33.02  Aligned_cols=105  Identities=12%  Similarity=0.049  Sum_probs=60.6

Q ss_pred             CCCCCCeEEEecCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEE
Q 026688           58 KPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  136 (235)
Q Consensus        58 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i  136 (235)
                      ...|++.|--+|.| -|.++..+++.. ..+|+++|-+..--+.+-+.+...      ..-....|-....-..+..|.+
T Consensus       178 g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd------~fv~~~~d~d~~~~~~~~~dg~  250 (360)
T KOG0023|consen  178 GLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGAD------VFVDSTEDPDIMKAIMKTTDGG  250 (360)
T ss_pred             CCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcc------eeEEecCCHHHHHHHHHhhcCc
Confidence            34467787777764 699999888874 359999999886666666654321      1111110111111011334444


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +-.-+ . +  ....+..+.++||++|.+++......
T Consensus       251 ~~~v~-~-~--a~~~~~~~~~~lk~~Gt~V~vg~p~~  283 (360)
T KOG0023|consen  251 IDTVS-N-L--AEHALEPLLGLLKVNGTLVLVGLPEK  283 (360)
T ss_pred             ceeee-e-c--cccchHHHHHHhhcCCEEEEEeCcCC
Confidence            41111 0 0  12346778999999999998876553

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=87.65  E-value=4.7  Score=33.30  Aligned_cols=95  Identities=14%  Similarity=0.122  Sum_probs=53.2

Q ss_pred             CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHH-HHHHHHHhhhcCCCCCCCeeEEe-cccccCCCCCCceeEE
Q 026688           60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENM-LKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAV  136 (235)
Q Consensus        60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~i  136 (235)
                      .++.+||-.|+|. |..+..+++.. .+++++++.+++. .+.+++ +   +   . . .++. .+........+.+|++
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~-l---G---a-~-~~i~~~~~~~v~~~~~~~D~v  246 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDR-L---G---A-D-SFLVTTDSQKMKEAVGTMDFI  246 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHh-C---C---C-c-EEEcCcCHHHHHHhhCCCcEE
Confidence            3578899888865 66666666654 3578899887543 334432 1   1   1 1 1111 1101110001247888


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +-..     .. ...+..+.+.++++|.++....
T Consensus       247 id~~-----G~-~~~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        247 IDTV-----SA-EHALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             EECC-----Cc-HHHHHHHHHhhcCCCEEEEEcc
Confidence            7321     11 2357788899999999987653

>PF14740 DUF4471: Domain of unknown function (DUF4471)

Probab=87.57  E-value=1.5  Score=34.66  Aligned_cols=67  Identities=16%  Similarity=0.314  Sum_probs=43.2

Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  209 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  209 (235)
                      .+.||+|+.....-|+-.|.     +.++++|+|.|++.+...     ..++...-...           -.+.+.++++
T Consensus       220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf-----mvdLrKEq~~~-----------F~~kv~eLA~  278 (289)
T PF14740_consen  220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF-----MVDLRKEQLQE-----------FVKKVKELAK  278 (289)
T ss_pred             cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh-----heeCCHHHHHH-----------HHHHHHHHHH
Confidence            36799999877666655554     777899999999876421     11211111111           1356889999


Q ss_pred             HcCCceeE
Q 026688          210 ACGLVDFK  217 (235)
Q Consensus       210 ~~Gf~~~~  217 (235)
                      .+||+.+.
T Consensus       279 ~aG~~p~~  286 (289)
T PF14740_consen  279 AAGFKPVT  286 (289)
T ss_pred             HCCCcccc
Confidence            99998643

>TIGR00936 ahcY adenosylhomocysteinase

Probab=87.51  E-value=11  Score=31.61  Aligned_cols=103  Identities=10%  Similarity=0.055  Sum_probs=60.7

Q ss_pred             CHHHHHHHHhhcC-CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           46 PEKEFELMKGYLK-PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        46 ~~~~~~~i~~~~~-~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      .+...+.+....+ ...+++|+-+|+|. |......++.. .++|+++|.++.-...+..    .      ...+  .++
T Consensus       178 g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~----~------G~~v--~~l  244 (406)
T TIGR00936       178 GQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM----D------GFRV--MTM  244 (406)
T ss_pred             chhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh----c------CCEe--CCH
Confidence            4455565655543 24588999999997 65555555543 4689999998854333332    1      1122  122


Q ss_pred             ccCCCCCCceeEEEecccccccCChHHHHH-HHHHhccCCcEEEEEEe
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVA-EISRVLRPGGVFVGTTY  170 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~-~~~~~L~pgG~li~~~~  170 (235)
                      .+.   -...|+++...      .....+. +....+++|+.++....
T Consensus       245 eea---l~~aDVVItaT------G~~~vI~~~~~~~mK~GailiN~G~  283 (406)
T TIGR00936       245 EEA---AKIGDIFITAT------GNKDVIRGEHFENMKDGAIVANIGH  283 (406)
T ss_pred             HHH---HhcCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEECC
Confidence            221   13468887632      1233444 48888999998876544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=87.51  E-value=14  Score=30.20  Aligned_cols=101  Identities=14%  Similarity=0.095  Sum_probs=58.8

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec--cccc-C-CCCC
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA--DISR-L-PFAS  130 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~  130 (235)
                      ....++.+||-.|+|. |..+..+++.. .+ .|+++|.++.-++.+++ +..     ..-+.....  +..+ . ....
T Consensus       182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~-lGa-----~~~i~~~~~~~~~~~~v~~~~~  254 (368)
T cd08300         182 AKVEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKK-FGA-----TDCVNPKDHDKPIQQVLVEMTD  254 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-cCC-----CEEEcccccchHHHHHHHHHhC
Confidence            3445688999998864 66666666654 34 69999999988877754 211     000111110  1111 0 0112


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                      +.+|+|+-.     ... ...+....+.++++ |.++....
T Consensus       255 ~g~d~vid~-----~g~-~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         255 GGVDYTFEC-----IGN-VKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             CCCcEEEEC-----CCC-hHHHHHHHHhhccCCCeEEEEcc
Confidence            368888842     211 24577788899887 88887654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=87.28  E-value=14  Score=29.82  Aligned_cols=100  Identities=21%  Similarity=0.221  Sum_probs=59.3

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEecc-------ccc
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRAD-------ISR  125 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d-------~~~  125 (235)
                      .....++.+||-.|+|. |..+..+++.. ..+ +++++.++...+.+++. .      ... +.....+       +..
T Consensus       157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~-g------~~~vi~~~~~~~~~~~~~~~~  228 (343)
T cd05285         157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL-G------ATHTVNVRTEDTPESAEKIAE  228 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc-C------CcEEeccccccchhHHHHHHH
Confidence            34455678888888765 66666777764 335 88888888777666442 1      111 1111111       111


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      . .....+|+|+-....      ...+....+.++++|.++....
T Consensus       229 ~-~~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~  266 (343)
T cd05285         229 L-LGGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVGM  266 (343)
T ss_pred             H-hCCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence            1 223458999853221      2357888999999999886543

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=86.89  E-value=1.7  Score=33.70  Aligned_cols=57  Identities=11%  Similarity=0.110  Sum_probs=39.2

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHh
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  105 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~  105 (235)
                      .+++..|.+.++.....+++|+=||+|..+..+.+...  .++.-|+++..+...+..+
T Consensus         6 ~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~--~vi~ND~~~~l~~~~~~~l   62 (260)
T PF02086_consen    6 RKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGK--RVIINDINPDLINFWKAVL   62 (260)
T ss_dssp             GGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SS--EEEEEES-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhccccc--ceeeeechHHHHHHHHHHH
Confidence            35667888888754578999999999999988876443  8999999998777666433

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=86.85  E-value=11  Score=29.84  Aligned_cols=96  Identities=16%  Similarity=0.109  Sum_probs=51.8

Q ss_pred             eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCC-CCCeeEEecccccCCCCCCceeEEEecc
Q 026688           64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      +|+-+|+|. | .++..|.+.+.  +|+.++.+++.++..++.    +... ...... .......+.....+|+|+..-
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~-~~~~~~~~~~~~~~d~vila~   74 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH--DVTLVARRGAHLDALNEN----GLRLEDGEITV-PVLAADDPAELGPQDLVILAV   74 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHc----CCcccCCceee-cccCCCChhHcCCCCEEEEec
Confidence            588899986 3 34555666655  899999877666555432    1100 000100 000011011125789888643


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      --.   +...+++.+...+.++..++...
T Consensus        75 k~~---~~~~~~~~l~~~l~~~~~iv~~~  100 (304)
T PRK06522         75 KAY---QLPAALPSLAPLLGPDTPVLFLQ  100 (304)
T ss_pred             ccc---cHHHHHHHHhhhcCCCCEEEEec
Confidence            322   23567778888887776665543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=86.71  E-value=2.9  Score=29.32  Aligned_cols=89  Identities=18%  Similarity=0.178  Sum_probs=50.8

Q ss_pred             EEEecCCC-chHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc--------c-ccC-CCCCCc
Q 026688           65 IIDASCGS-GLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD--------I-SRL-PFASSS  132 (235)
Q Consensus        65 vLdiG~G~-G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d--------~-~~~-~~~~~~  132 (235)
                      |+-+|+|. |.+.. .|.+.+.  .|+.++.++ .++..++.-          +.+...+        . ... +.....
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQG----------LTITGPDGDETVQPPIVISAPSADAGP   67 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHC----------EEEEETTEEEEEEEEEEESSHGHHHST
T ss_pred             CEEECcCHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhhee----------EEEEecccceecccccccCcchhccCC
Confidence            56678886 54443 4445454  899999877 555543321          2221111        0 000 113468


Q ss_pred             eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +|+|+..-=-.   +....++.+.+.+.|+..+++..
T Consensus        68 ~D~viv~vKa~---~~~~~l~~l~~~~~~~t~iv~~q  101 (151)
T PF02558_consen   68 YDLVIVAVKAY---QLEQALQSLKPYLDPNTTIVSLQ  101 (151)
T ss_dssp             ESEEEE-SSGG---GHHHHHHHHCTGEETTEEEEEES
T ss_pred             CcEEEEEeccc---chHHHHHHHhhccCCCcEEEEEe
Confidence            99999643222   23567889999999997666543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=86.62  E-value=3.9  Score=29.81  Aligned_cols=89  Identities=19%  Similarity=0.082  Sum_probs=49.0

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .+++|.-+|+|. |......++.. ..+|+++|.+.........          ..  +...++.++-   ...|+|++.
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~----------~~--~~~~~l~ell---~~aDiv~~~   98 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGADE----------FG--VEYVSLDELL---AQADIVSLH   98 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHH----------TT--EEESSHHHHH---HH-SEEEE-
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhccc----------cc--ceeeehhhhc---chhhhhhhh
Confidence            478999999986 55555555543 4699999999865542211          11  2333544431   356888865


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      ..+.-- ...-+=++....+|+|..|+
T Consensus        99 ~plt~~-T~~li~~~~l~~mk~ga~lv  124 (178)
T PF02826_consen   99 LPLTPE-TRGLINAEFLAKMKPGAVLV  124 (178)
T ss_dssp             SSSSTT-TTTSBSHHHHHTSTTTEEEE
T ss_pred             hccccc-cceeeeeeeeeccccceEEE
Confidence            443210 11122245677788876554

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=86.51  E-value=2.9  Score=31.54  Aligned_cols=74  Identities=7%  Similarity=0.124  Sum_probs=49.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .++.+.|..........-|.+||.|.|..+..+...+. .....++.++..+.-.+......    ..+..+...|+..
T Consensus        36 ~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa----~~~~~IHh~D~LR  109 (326)
T KOG0821|consen   36 LRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAA----PGKLRIHHGDVLR  109 (326)
T ss_pred             hHHHHHHHHhccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcC----CcceEEeccccce
Confidence            34455666666655578899999999999999988763 47788888876655544333322    3356666666643

>PLN00203 glutamyl-tRNA reductase

Probab=86.42  E-value=15  Score=31.94  Aligned_cols=99  Identities=13%  Similarity=0.122  Sum_probs=49.9

Q ss_pred             HHHHHHhhcCC--CCCCeEEEecCCC-chHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           49 EFELMKGYLKP--VLGGNIIDASCGS-GLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        49 ~~~~i~~~~~~--~~~~~vLdiG~G~-G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      ..+.....+..  ..+.+|+-||+|. |.... .+...+ ...++.++.+++-.+.....+.      ...+.+  .++.
T Consensus       251 Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nRs~era~~La~~~~------g~~i~~--~~~~  321 (519)
T PLN00203        251 AVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNRSEERVAALREEFP------DVEIIY--KPLD  321 (519)
T ss_pred             HHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhC------CCceEe--ecHh
Confidence            33444444442  3468999999975 43333 333333 2479999998766655544321      111222  2222


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHH
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEIS  156 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~  156 (235)
                      +........|+|++.....+.--....++.+.
T Consensus       322 dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        322 EMLACAAEADVVFTSTSSETPLFLKEHVEALP  353 (519)
T ss_pred             hHHHHHhcCCEEEEccCCCCCeeCHHHHHHhh
Confidence            22111256899997654433222233444443

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=86.35  E-value=16  Score=29.67  Aligned_cols=94  Identities=21%  Similarity=0.261  Sum_probs=54.8

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEeccc-------ccCCCCC
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADI-------SRLPFAS  130 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~-------~~~~~~~  130 (235)
                      ++.+||-.|+|. |..+..+++.. .. ++++++.++.-.+.+++ +   +   ... +.....+.       ... ...
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~-~---g---~~~vi~~~~~~~~~~~~~i~~~-~~~  247 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELARE-F---G---ADATIDIDELPDPQRRAIVRDI-TGG  247 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-c---C---CCeEEcCcccccHHHHHHHHHH-hCC
Confidence            577888888754 55666666664 34 79999988876665543 1   1   111 01111111       111 123


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ..+|+++-...      ....+....+.++++|.++...
T Consensus       248 ~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         248 RGADVVIEASG------HPAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             CCCcEEEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence            46898884321      1235678889999999998654

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=86.30  E-value=2.7  Score=33.62  Aligned_cols=98  Identities=10%  Similarity=0.072  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHhhcCCCC--CCe---EEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCee
Q 026688           43 FPGPEKEFELMKGYLKPVL--GGN---IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL  117 (235)
Q Consensus        43 ~~~~~~~~~~i~~~~~~~~--~~~---vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~  117 (235)
                      .|.....+.+|-+++....  ..+   -+|||.|...+-..+..+-.+-...++|++.-.+..|+.+..++++  ...+.
T Consensus        79 VPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l--ss~ik  156 (419)
T KOG2912|consen   79 VPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL--SSLIK  156 (419)
T ss_pred             CccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccccc--cccee
Confidence            3555566677766664322  222   4788887754444443332234789999999999999999988776  44555


Q ss_pred             EEecccccC-------CCCCCceeEEEecccc
Q 026688          118 LVRADISRL-------PFASSSIDAVHAGAAI  142 (235)
Q Consensus       118 ~~~~d~~~~-------~~~~~~~D~i~~~~~l  142 (235)
                      ++.....+.       ..++..||.++|+--+
T Consensus       157 vV~~~~~ktll~d~~~~~~e~~ydFcMcNPPF  188 (419)
T KOG2912|consen  157 VVKVEPQKTLLMDALKEESEIIYDFCMCNPPF  188 (419)
T ss_pred             eEEecchhhcchhhhccCccceeeEEecCCch
Confidence            555433211       1224569999998644

>cd08293 PTGR2 Prostaglandin reductase

Probab=86.21  E-value=6.7  Score=31.64  Aligned_cols=93  Identities=6%  Similarity=0.036  Sum_probs=55.5

Q ss_pred             CeEEEecC--CCchHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEeccccc-C-CCCCCceeEE
Q 026688           63 GNIIDASC--GSGLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR-L-PFASSSIDAV  136 (235)
Q Consensus        63 ~~vLdiG~--G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~-~-~~~~~~~D~i  136 (235)
                      .+||-.|+  |.|..+..+++.. .+ +|++++.+++-.+.+++.+..      .. +.....++.+ + ....+.+|+|
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa------~~vi~~~~~~~~~~i~~~~~~gvd~v  228 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGF------DAAINYKTDNVAERLRELCPEGVDVY  228 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCC------cEEEECCCCCHHHHHHHHCCCCceEE
Confidence            78988886  4577777777764 34 799999888777766653321      11 1111111111 0 0112468988


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +....     .  ..+..+.++|+++|.++...
T Consensus       229 id~~g-----~--~~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         229 FDNVG-----G--EISDTVISQMNENSHIILCG  254 (345)
T ss_pred             EECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence            84221     2  13577889999999998754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=86.20  E-value=7.8  Score=30.04  Aligned_cols=140  Identities=12%  Similarity=-0.011  Sum_probs=80.1

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCC------------CceEEEEeCCHHHHHHHH-------------HHhhhcC------
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGL------------FSLVVALDYSENMLKQCY-------------EFVQQES------  109 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~------------~~~v~~~D~s~~~~~~a~-------------~~~~~~~------  109 (235)
                      ..-.|+|+|-|+|.....+.+..+            ...++.++.+|.....+.             .....+.      
T Consensus        58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~  137 (252)
T COG4121          58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC  137 (252)
T ss_pred             cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence            356899999999988776655321            224666665542221111             1111111      


Q ss_pred             ----CCCCCCeeEEecccccC-CCCCC---ceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEEEeccCCCcc
Q 026688          110 ----NFPKENFLLVRADISRL-PFASS---SIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFN  177 (235)
Q Consensus       110 ----~~~~~~~~~~~~d~~~~-~~~~~---~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~~~~~  177 (235)
                          ...........+|+... |....   .+|+++....- -..+|    +.++..+++..+|||.+.--         
T Consensus       138 ~r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFs-P~kNP~mW~~e~l~~~a~~~~~~~~l~t~---------  207 (252)
T COG4121         138 AAAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFR-PVKNPEMWEDELLNLMARIPYRDPTLATF---------  207 (252)
T ss_pred             HHhhhcchheeeeeeeehhhcCCcccccccCccEEecCCcc-ccCChhhccHHHHHHHHhhcCCCCceech---------
Confidence                00123456677777542 32222   67888754433 23455    47899999999999987521         


Q ss_pred             cchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeC-cEEEEEEec
Q 026688          178 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-GFVMFTATK  231 (235)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-~~~~~~~~k  231 (235)
                                           -+..-+++-|+++||++.+....+ ...+..+.|
T Consensus       208 ---------------------ssA~~vRr~L~~aGF~v~~r~g~grKRem~~a~~  241 (252)
T COG4121         208 ---------------------AAAIAVRRRLEQAGFTVEKRTGRGKKRELLRGVK  241 (252)
T ss_pred             ---------------------HHHHHHHHHHHHcCceeeecCCccccccchhhhc
Confidence                                 123456788899999988765333 344555544

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=85.88  E-value=17  Score=29.26  Aligned_cols=100  Identities=18%  Similarity=0.205  Sum_probs=58.9

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C--CCCCCc
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L--PFASSS  132 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~~  132 (235)
                      ....++.+||..|+|. |..+..+++.. ..+++++..+++..+.+++.- .     ..-+.....++.+ +  ..+...
T Consensus       155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g-~-----~~v~~~~~~~~~~~l~~~~~~~~  227 (337)
T cd08261         155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELG-A-----DDTINVGDEDVAARLRELTDGEG  227 (337)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhC-C-----CEEecCcccCHHHHHHHHhCCCC
Confidence            3445678999998764 66666777663 458888888887777664421 1     0001111111111 0  112345


Q ss_pred             eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +|+++....      ....+..+.+.|+++|.++...
T Consensus       228 vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         228 ADVVIDATG------NPASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             CCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence            899985321      1245788899999999988654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK06701 short chain dehydrogenase; Provisional

Probab=85.45  E-value=16  Score=28.80  Aligned_cols=103  Identities=19%  Similarity=0.206  Sum_probs=56.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCH-HHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSE-NMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      ++++|-.|++.|   .++..+++++.  +|+.++.++ ..++.....+...    ..++.++.+|+.+..     +.   
T Consensus        46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~i~  119 (290)
T PRK06701         46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE----GVKCLLIPGDVSDEAFCKDAVEETV  119 (290)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHHH
Confidence            567888887554   33445555554  788887764 2333333333322    235778888886532     10   


Q ss_pred             --CCceeEEEecccccc----cCC----------------hHHHHHHHHHhccCCcEEEEEEe
Q 026688          130 --SSSIDAVHAGAAIHC----WSS----------------PSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 --~~~~D~i~~~~~l~~----~~~----------------~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                        .+..|+++.+.....    +.+                +..+++.+.+.++++|.+++...
T Consensus       120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence              136798886644321    111                11345566666677777776553

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=85.41  E-value=8.4  Score=25.47  Aligned_cols=86  Identities=19%  Similarity=0.098  Sum_probs=51.3

Q ss_pred             CCCchHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeEEEeccccc
Q 026688           70 CGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVHAGAAIH  143 (235)
Q Consensus        70 ~G~G~~~~~l~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~i~~~~~l~  143 (235)
                      ||.|..+..+++..  ....|+.+|.+++.++.+++.          .+.++.+|..+..    ..-...|.+++...  
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~--   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD--   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence            34455555554431  123799999999998887753          3678889987642    22357787775322  


Q ss_pred             ccCChH--HHHHHHHHhccCCcEEEEEEe
Q 026688          144 CWSSPS--TGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       144 ~~~~~~--~~l~~~~~~L~pgG~li~~~~  170 (235)
                         +..  ..+-...+-+.|...++....
T Consensus        72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   72 ---DDEENLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             ---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred             ---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence               332  234445566677777776543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species

Probab=85.35  E-value=15  Score=28.17  Aligned_cols=101  Identities=14%  Similarity=0.071  Sum_probs=63.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      -...+..++....-.++|-+|+- +|.+....+....  +|+.+|+.|.+.+..           ..++.|...-    .
T Consensus        29 Ka~ai~~~le~~~~k~~lI~G~YltG~~iA~~L~~~~--eV~lvDI~p~lk~ll-----------~~~i~F~~~~----~   91 (252)
T PF06690_consen   29 KANAIKYWLEGEEFKQALIFGAYLTGNFIASALSKKC--EVTLVDIHPHLKELL-----------NENIKFMEFR----N   91 (252)
T ss_pred             HHHHHHHHhcccccceEEEEEEEeehHHHHHHhccCc--eEEEEeCcHHHHHHh-----------cCCCceeecc----C
Confidence            34566777776656699999985 4666655555433  999999999876655           2356665211    1


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      -....+|+|+-...+.-+. +     +..+-+.| ..+++.+|...
T Consensus        92 ~~~~~~DlIID~TGlGGv~-~-----~~Ls~~~p-~v~IVEdP~~~  130 (252)
T PF06690_consen   92 GLEGNPDLIIDTTGLGGVD-P-----DFLSKFNP-KVFIVEDPKGD  130 (252)
T ss_pred             CCCCCCCEEEECCCCCCCC-H-----HHHhccCC-CEEEEECCCcc
Confidence            1235799999877776552 2     22334444 57777777654

The function of this family is unknown.

>PRK05854 short chain dehydrogenase; Provisional

Probab=85.28  E-value=10  Score=30.40  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=49.1

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|-.|++.|   ..+..|++.+.  +|+.+..+++-.+.+.+.+.....  ..++.++..|+.+..          -
T Consensus        14 gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dl~d~~sv~~~~~~~~~   89 (313)
T PRK05854         14 GKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVP--DAKLSLRALDLSSLASVAALGEQLRA   89 (313)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCC--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            578888887665   23444555554  899999888776666665543211  235788888987632          0


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      ..+..|+++.+...
T Consensus        90 ~~~~iD~li~nAG~  103 (313)
T PRK05854         90 EGRPIHLLINNAGV  103 (313)
T ss_pred             hCCCccEEEECCcc
Confidence            12468999987554

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.08  E-value=4  Score=32.97  Aligned_cols=93  Identities=19%  Similarity=0.161  Sum_probs=55.6

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh-------cCCCC---CCCeeEEecccccCCCC
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------ESNFP---KENFLLVRADISRLPFA  129 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~~~~---~~~~~~~~~d~~~~~~~  129 (235)
                      -++|--||+|+ | ..+..++..+.  .|+..|.+++.++.++.++..       .+...   ..++.+. .++.+   .
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---a   80 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---C   80 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---H
Confidence            36799999995 4 45556666665  999999999888776654431       11100   0112211 12211   1


Q ss_pred             CCceeEEEecccccccCCh----HHHHHHHHHhccCCcEE
Q 026688          130 SSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVF  165 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l  165 (235)
                      -...|+|+     +.+++.    ..+++++.+.++|+..|
T Consensus        81 v~~aDlVi-----EavpE~l~vK~~lf~~l~~~~~~~aIl  115 (321)
T PRK07066         81 VADADFIQ-----ESAPEREALKLELHERISRAAKPDAII  115 (321)
T ss_pred             hcCCCEEE-----ECCcCCHHHHHHHHHHHHHhCCCCeEE
Confidence            14567777     444432    47888999999998733

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=85.05  E-value=7.7  Score=31.42  Aligned_cols=104  Identities=19%  Similarity=0.132  Sum_probs=62.6

Q ss_pred             HhhcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--C-C
Q 026688           54 KGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--P-F  128 (235)
Q Consensus        54 ~~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~-~  128 (235)
                      .......++.+||-.|+  |-|.++..|++..- ..++++--+++-.+.+++.-.      ..-+.+...|+.+.  . .
T Consensus       135 ~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G-~~~v~~~~s~~k~~~~~~lGA------d~vi~y~~~~~~~~v~~~t  207 (326)
T COG0604         135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKALG-ATVVAVVSSSEKLELLKELGA------DHVINYREEDFVEQVRELT  207 (326)
T ss_pred             HHhcCCCCCCEEEEecCCchHHHHHHHHHHHcC-CcEEEEecCHHHHHHHHhcCC------CEEEcCCcccHHHHHHHHc
Confidence            33445566899999985  44778888888752 266666666655555554322      11233333333321  1 1


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ....+|+|+..-.       ...+.+..+.|+++|.++.....
T Consensus       208 ~g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         208 GGKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             CCCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEecC
Confidence            2346999994222       24567789999999999886654

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=84.85  E-value=17  Score=30.24  Aligned_cols=39  Identities=23%  Similarity=0.208  Sum_probs=27.1

Q ss_pred             eEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 026688           64 NIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  104 (235)
Q Consensus        64 ~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~  104 (235)
                      +|--+|.|. |.-+..+...+.  .|+++|++++.++..++.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~G~--~VigvD~d~~kv~~l~~g   41 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQNH--EVVALDILPSRVAMLNDR   41 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC--cEEEEECCHHHHHHHHcC
Confidence            466678884 543334434454  899999999998888763

>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox

Probab=84.73  E-value=6.5  Score=23.59  Aligned_cols=58  Identities=16%  Similarity=0.125  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEE
Q 026688          148 PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF  227 (235)
Q Consensus       148 ~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  227 (235)
                      |--.+++..+-+++|+.|.+..-..                          -+..++..++++.|++.+.....+..+.+
T Consensus        12 Pvl~~kkal~~l~~G~~l~V~~d~~--------------------------~a~~di~~~~~~~G~~~~~~~~~~~~~~~   65 (69)
T cd03420          12 PILKLKKEIDKLQDGEQLEVKASDP--------------------------GFARDAQAWCKSTGNTLISLETEKGKVKA   65 (69)
T ss_pred             HHHHHHHHHHcCCCCCEEEEEECCc--------------------------cHHHHHHHHHHHcCCEEEEEEecCCEEEE
Confidence            3344677777888998776655432                          35678999999999999877665655555


Q ss_pred             EEec
Q 026688          228 TATK  231 (235)
Q Consensus       228 ~~~k  231 (235)
                      +.+|
T Consensus        66 ~I~k   69 (69)
T cd03420          66 VIEK   69 (69)
T ss_pred             EEEC
Confidence            5554

SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.69  E-value=15  Score=29.14  Aligned_cols=94  Identities=16%  Similarity=0.211  Sum_probs=55.3

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCCC-------CCeeEEecccccC
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFPK-------ENFLLVRADISRL  126 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~-------~~~~~~~~d~~~~  126 (235)
                      .+|.-||+|. | ..+..++..+.  .|+.+|.+++.++.+.+++...       +..+.       .++.+ ..|... 
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED-   80 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH-
Confidence            5788899986 3 44556666665  8999999999888765433211       10000       11222 223321 


Q ss_pred             CCCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEE
Q 026688          127 PFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~  168 (235)
                         ....|+|+.     .+++.    ..+++.+...++|+..++..
T Consensus        81 ---~~~aD~Vie-----avpe~~~~k~~~~~~l~~~~~~~~ii~s~  118 (292)
T PRK07530         81 ---LADCDLVIE-----AATEDETVKRKIFAQLCPVLKPEAILATN  118 (292)
T ss_pred             ---hcCCCEEEE-----cCcCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence               235688884     33332    36678888889998765533

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=84.62  E-value=4.2  Score=28.61  Aligned_cols=111  Identities=15%  Similarity=0.100  Sum_probs=53.5

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P  127 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~  127 (235)
                      .+.++...+... +.-|||+|-|.|..=-++.+..|+..++++|-.-..-..+.          .+.-.++.+|+.+. +
T Consensus        17 ~L~~a~~~v~~~-~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~----------P~~~~~ilGdi~~tl~   85 (160)
T PF12692_consen   17 CLNWAAAQVAGL-PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST----------PPEEDLILGDIRETLP   85 (160)
T ss_dssp             HHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-------------GGGEEES-HHHHHH
T ss_pred             HHHHHHHHhcCC-CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC----------CchHheeeccHHHHhH
Confidence            344555555543 57899999999999999999999999999997321111110          12345677777552 2


Q ss_pred             C---CCCceeEEEecccccccCChH----HHHHHHHHhccCCcEEEEEEe
Q 026688          128 F---ASSSIDAVHAGAAIHCWSSPS----TGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ~---~~~~~D~i~~~~~l~~~~~~~----~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .   -....-++-.....++-....    .+-.-+..+|.|||.++-..+
T Consensus        86 ~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~p  135 (160)
T PF12692_consen   86 ALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP  135 (160)
T ss_dssp             HHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred             HHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence            1   112222333222222211111    223356778999998875443

>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []

Probab=84.43  E-value=5.8  Score=28.29  Aligned_cols=93  Identities=16%  Similarity=0.161  Sum_probs=46.1

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +++||-+|.=...+...+.....  ++.+...+-..  ......       ..++.+... . +.+ ....||.|+.   
T Consensus        13 ~k~vL~~g~~~D~~~~~L~~~~~--~v~~~~~~~~~--~~~~~~-------~~~~~~~f~-~-~~~-~~~~~D~vvl---   75 (155)
T PF08468_consen   13 GKSVLFAGDPQDDLPAQLPAIAV--SVHVFSYHHWY--ALQKQA-------QSNVQFHFG-A-ELP-ADQDFDTVVL---   75 (155)
T ss_dssp             T-EEEEEE---SSHHHHS--SEE--EEEESBHHHHH--HHHHHH-------GGGEEE-SS----HH-HHTT-SEEEE---
T ss_pred             CCeEEEEcCCchhhHHHhhhcCC--EEEEEEchHHH--HHhHhc-------ccCceEeee-c-cCC-cccCCCEEEE---
Confidence            67799998777677777765432  55554422221  111111       123444311 1 112 1356999993   


Q ss_pred             ccccCCh----HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          142 IHCWSSP----STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       142 l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                        ++|..    .-.|..+...|++||.|+++.-+..
T Consensus        76 --y~PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~  109 (155)
T PF08468_consen   76 --YWPKAKAEAQYLLANLLSHLPPGTEIFVVGENKG  109 (155)
T ss_dssp             --E--SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGG
T ss_pred             --EccCcHHHHHHHHHHHHHhCCCCCEEEEEecCcc
Confidence              34433    3568899999999999999988764

; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=84.35  E-value=20  Score=29.61  Aligned_cols=99  Identities=17%  Similarity=0.158  Sum_probs=56.3

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEec---cc----ccCCC
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRA---DI----SRLPF  128 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~---d~----~~~~~  128 (235)
                      ...++.+||-.|+|. |..+..+++......+++++.++.-.+.+++.    +   ... +.....   +.    ... .
T Consensus       200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~----g---~~~~v~~~~~~~~~~~~~v~~~-~  271 (384)
T cd08265         200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM----G---ADYVFNPTKMRDCLSGEKVMEV-T  271 (384)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C---CCEEEcccccccccHHHHHHHh-c
Confidence            344577888888764 55555566654322689999888755555542    1   101 111100   11    111 1


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ....+|+|+..     ...+...+..+.+.|+++|.++...
T Consensus       272 ~g~gvDvvld~-----~g~~~~~~~~~~~~l~~~G~~v~~g  307 (384)
T cd08265         272 KGWGADIQVEA-----AGAPPATIPQMEKSIAINGKIVYIG  307 (384)
T ss_pred             CCCCCCEEEEC-----CCCcHHHHHHHHHHHHcCCEEEEEC
Confidence            23468988843     2233345778889999999998754

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=84.14  E-value=10  Score=30.43  Aligned_cols=100  Identities=19%  Similarity=0.136  Sum_probs=50.3

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ..+|+-+|+|. | .++..|++.+.  .|+.+..++.  +..++.-...... .....+........+.....+|+|+..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~--~V~~~~r~~~--~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~vila   79 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGF--DVHFLLRSDY--EAVRENGLQVDSV-HGDFHLPPVQAYRSAEDMPPCDWVLVG   79 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeCCH--HHHHhCCeEEEeC-CCCeeecCceEEcchhhcCCCCEEEEE
Confidence            46899999996 4 56666777665  6777766542  2221110000000 011111100111111113568998864


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      -=.++   ....++.+...+++++.++...
T Consensus        80 vK~~~---~~~~~~~l~~~~~~~~~iv~lq  106 (313)
T PRK06249         80 LKTTA---NALLAPLIPQVAAPDAKVLLLQ  106 (313)
T ss_pred             ecCCC---hHhHHHHHhhhcCCCCEEEEec
Confidence            32222   2456777888888888766543

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=84.11  E-value=9.6  Score=31.37  Aligned_cols=111  Identities=14%  Similarity=0.105  Sum_probs=70.9

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-------------
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-------------  128 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-------------  128 (235)
                      ..+.||.+|+.+.....+++..+..+--|+++..+.+..+........ .......+..+|....+.             
T Consensus       181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~-~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~  259 (364)
T KOG1269|consen  181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSE-HVDILLEIEGGDALPAETFNTDVFDLLKSFG  259 (364)
T ss_pred             cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcc-cccccCceeccccccceeccccHHHHHhhcc
Confidence            478999999999999999988776677788888877777665433210 002234444444433220             


Q ss_pred             ----------------CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCc
Q 026688          129 ----------------ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF  176 (235)
Q Consensus       129 ----------------~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~  176 (235)
                                      +...+|.   ..+..|+.+...+.......++|+|.+++.+.....+.
T Consensus       260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p~  320 (364)
T KOG1269|consen  260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLPE  320 (364)
T ss_pred             chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCcCCc
Confidence                            0112222   23445555556778889999999999999887664433

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=84.08  E-value=0.7  Score=33.36  Aligned_cols=99  Identities=23%  Similarity=0.205  Sum_probs=54.6

Q ss_pred             CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-----------cccccCC
Q 026688           60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-----------ADISRLP  127 (235)
Q Consensus        60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~d~~~~~  127 (235)
                      .++.+|+-+|.|. |..+..++... .++++..|..+..++..+.....       .+.+..           .+..+.+
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~   89 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGAY-------FIEVDYEDHLERKDFDKADYYEHP   89 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTTE-------ESEETTTTTTTSB-CCHHHCHHHC
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccCc-------eEEEcccccccccccchhhhhHHH
Confidence            3478999999997 66677776665 46999999998877766543221       122210           0000001


Q ss_pred             ------CC--CCceeEEEecccccccCChHHHHHHHHHhccCCcEEE
Q 026688          128 ------FA--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       128 ------~~--~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                            +.  -..+|+|+.......-..|.-+-++..+.++||..++
T Consensus        90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv  136 (168)
T PF01262_consen   90 ESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV  136 (168)
T ss_dssp             CHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred             HHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence                  10  1367988876555444445445566777788765554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=84.07  E-value=13  Score=28.03  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=23.2

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCC
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYS   94 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s   94 (235)
                      ..+|+-+|||. | ..+..|++.+. .+++.+|.+
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFD   61 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            57899999985 5 45556666653 578888876

>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria

Probab=84.05  E-value=11  Score=25.72  Aligned_cols=72  Identities=15%  Similarity=0.050  Sum_probs=51.6

Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  209 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  209 (235)
                      .+..|+|++.+--..- +....|-.+.+.|..+|.+.+.+|...                     .....++.++.+...
T Consensus        43 ddvvD~vllWwR~~Dg-DL~D~LvDa~~~L~d~G~IWvltPK~g---------------------r~g~V~~~~I~eaA~  100 (127)
T PF11253_consen   43 DDVVDVVLLWWRDDDG-DLVDALVDARTNLADDGVIWVLTPKAG---------------------RPGHVEPSDIREAAP  100 (127)
T ss_pred             cccccEEEEEEECCcc-hHHHHHHHHHhhhcCCCEEEEEccCCC---------------------CCCCCCHHHHHHHHh
Confidence            3567888854332211 334667778889999999999887642                     233578899999999


Q ss_pred             HcCCceeEEEeeCc
Q 026688          210 ACGLVDFKCTRNRG  223 (235)
Q Consensus       210 ~~Gf~~~~~~~~~~  223 (235)
                      .+|+...+....+.
T Consensus       101 taGL~~t~~~~v~~  114 (127)
T PF11253_consen  101 TAGLVQTKSCAVGD  114 (127)
T ss_pred             hcCCeeeeeeccCC
Confidence            99999888876554

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=84.00  E-value=10  Score=30.54  Aligned_cols=101  Identities=11%  Similarity=0.053  Sum_probs=57.5

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeE
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  135 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  135 (235)
                      +...++.+||-.|+|. |..+..+++.. ..+++.++.+++-++.+++ +..     ..-+.....+....-.....+|+
T Consensus       159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~-~g~-----~~~i~~~~~~~~~~~~~~~~~d~  231 (333)
T cd08296         159 SGAKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARK-LGA-----HHYIDTSKEDVAEALQELGGAKL  231 (333)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH-cCC-----cEEecCCCccHHHHHHhcCCCCE
Confidence            3455678999999764 66666666653 3479999998877777744 211     00011111111110000134788


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ++..     .. ....+..+.+.++++|.++....
T Consensus       232 vi~~-----~g-~~~~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         232 ILAT-----AP-NAKAISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             EEEC-----CC-chHHHHHHHHHcccCCEEEEEec
Confidence            8742     11 12457788999999999887543

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK06128 oxidoreductase; Provisional

Probab=83.85  E-value=20  Score=28.43  Aligned_cols=103  Identities=16%  Similarity=0.144  Sum_probs=55.7

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCH--HHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C---
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSE--NMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---  128 (235)
                      ++++|-.|++.|   .++..+++.+.  .|+.+..+.  ...+...+.+...    ..++.++.+|+.+..     +   
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~  128 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAE----GRKAVALPGDLKDEAFCRQLVERA  128 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHc----CCeEEEEecCCCCHHHHHHHHHHH
Confidence            568888886544   23334555554  676665543  2233333333322    235677888886531     0   


Q ss_pred             --CCCceeEEEecccccc----cCC--h--------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          129 --ASSSIDAVHAGAAIHC----WSS--P--------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 --~~~~~D~i~~~~~l~~----~~~--~--------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                        .-+..|+++.+.....    +.+  .              -.+++.+.+.++++|.++....
T Consensus       129 ~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        129 VKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             HHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence              0146899997765421    111  1              1345666777778887776543

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=83.51  E-value=23  Score=28.94  Aligned_cols=94  Identities=20%  Similarity=0.169  Sum_probs=54.8

Q ss_pred             CCCCeEEEecCC-CchHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC------CCCCC
Q 026688           60 VLGGNIIDASCG-SGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFASS  131 (235)
Q Consensus        60 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~  131 (235)
                      .++.+||-.|+| .|..+..+++... .. +++++.++...+.+++ +..        ..+...+-...      .....
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~-~g~--------~~v~~~~~~~~~~~l~~~~~~~  255 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE-LGA--------THTVNAAKEDAVAAIREITGGR  255 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH-hCC--------ceEecCCcccHHHHHHHHhCCC
Confidence            456788877765 3566666666543 35 8899888877766643 211        11111111110      11235


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .+|+|+..     .... ..+..+.+.|+++|.++...
T Consensus       256 ~~d~vld~-----vg~~-~~~~~~~~~l~~~G~~v~~g  287 (367)
T cd08263         256 GVDVVVEA-----LGKP-ETFKLALDVVRDGGRAVVVG  287 (367)
T ss_pred             CCCEEEEe-----CCCH-HHHHHHHHHHhcCCEEEEEc
Confidence            68988842     2222 25778889999999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO

Probab=83.51  E-value=12  Score=26.82  Aligned_cols=90  Identities=14%  Similarity=0.048  Sum_probs=41.2

Q ss_pred             CCeEEEecCCCchH-HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           62 GGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        62 ~~~vLdiG~G~G~~-~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      +++|.=.|+|.... ...++...++.-...+|.++.-.       ..  ..+...+.++.-+..    .....|.|+...
T Consensus        68 gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~-------G~--~~PGt~ipI~~p~~l----~~~~pd~vivla  134 (160)
T PF08484_consen   68 GKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQ-------GK--YLPGTHIPIVSPEEL----KERKPDYVIVLA  134 (160)
T ss_dssp             T--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGT-------TE--E-TTT--EEEEGGG------SS--SEEEES-
T ss_pred             CCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhc-------Cc--ccCCCCCeECCHHHH----hhCCCCEEEEcC
Confidence            68899999988544 44555444433566889877311       00  111234444444432    234568877533


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      ..+    .+.+.+++...++.||.+++-
T Consensus       135 w~y----~~EI~~~~~~~~~~gg~fi~p  158 (160)
T PF08484_consen  135 WNY----KDEIIEKLREYLERGGKFIVP  158 (160)
T ss_dssp             GGG----HHHHHHHTHHHHHTT-EEEE-
T ss_pred             hhh----HHHHHHHHHHHHhcCCEEEEe
Confidence            222    357788888899999999874

; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=83.36  E-value=14  Score=26.38  Aligned_cols=110  Identities=23%  Similarity=0.255  Sum_probs=59.0

Q ss_pred             eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +|--||+|. | ..+..|++.+.  .|++.|.+++..+...+.          ... .+.+..+.   ....|+|++   
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~--~v~~~d~~~~~~~~~~~~----------g~~-~~~s~~e~---~~~~dvvi~---   63 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGY--EVTVYDRSPEKAEALAEA----------GAE-VADSPAEA---AEQADVVIL---   63 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTT--EEEEEESSHHHHHHHHHT----------TEE-EESSHHHH---HHHBSEEEE---
T ss_pred             EEEEEchHHHHHHHHHHHHhcCC--eEEeeccchhhhhhhHHh----------hhh-hhhhhhhH---hhcccceEe---
Confidence            566778875 2 44556666665  899999999777666542          122 22333332   134588884   


Q ss_pred             ccccCCh---HHHHHH--HHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCcee
Q 026688          142 IHCWSSP---STGVAE--ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF  216 (235)
Q Consensus       142 l~~~~~~---~~~l~~--~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  216 (235)
                        .+++.   +.++..  +...|++|..++ ...+..      |                  -+..++.+.++..|...+
T Consensus        64 --~v~~~~~v~~v~~~~~i~~~l~~g~iii-d~sT~~------p------------------~~~~~~~~~~~~~g~~~v  116 (163)
T PF03446_consen   64 --CVPDDDAVEAVLFGENILAGLRPGKIII-DMSTIS------P------------------ETSRELAERLAAKGVRYV  116 (163)
T ss_dssp             ---SSSHHHHHHHHHCTTHGGGS-TTEEEE-E-SS--------H------------------HHHHHHHHHHHHTTEEEE
T ss_pred             --ecccchhhhhhhhhhHHhhccccceEEE-ecCCcc------h------------------hhhhhhhhhhhhccceee
Confidence              23443   345555  667777755444 332221      1                  123566677777887666


Q ss_pred             EEE
Q 026688          217 KCT  219 (235)
Q Consensus       217 ~~~  219 (235)
                      +..
T Consensus       117 dap  119 (163)
T PF03446_consen  117 DAP  119 (163)
T ss_dssp             EEE
T ss_pred             eee
Confidence            555

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=83.34  E-value=5.9  Score=27.38  Aligned_cols=77  Identities=13%  Similarity=0.067  Sum_probs=45.2

Q ss_pred             CCCCeEEEecCCC-chH-HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           60 VLGGNIIDASCGS-GLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        60 ~~~~~vLdiG~G~-G~~-~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ..++++|-+|+|. |.. ...+...+. .+++.+..+.+-.+...+.+.      ...+.+.  ++.+..-....+|+|+
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~------~~~~~~~--~~~~~~~~~~~~DivI   80 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFG------GVNIEAI--PLEDLEEALQEADIVI   80 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHT------GCSEEEE--EGGGHCHHHHTESEEE
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcC------cccccee--eHHHHHHHHhhCCeEE
Confidence            3478999999975 333 334555543 469999998765555444431      2234443  3333321135799999


Q ss_pred             eccccccc
Q 026688          138 AGAAIHCW  145 (235)
Q Consensus       138 ~~~~l~~~  145 (235)
                      ......+.
T Consensus        81 ~aT~~~~~   88 (135)
T PF01488_consen   81 NATPSGMP   88 (135)
T ss_dssp             E-SSTTST
T ss_pred             EecCCCCc
Confidence            87766544

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=82.99  E-value=7.4  Score=29.03  Aligned_cols=32  Identities=16%  Similarity=0.369  Sum_probs=22.9

Q ss_pred             CCeEEEecCCC-ch-HHHHHHHcCCCceEEEEeCC
Q 026688           62 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYS   94 (235)
Q Consensus        62 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~v~~~D~s   94 (235)
                      ..+|+-+|||. |. .+..+++.+ ..+++.+|.+
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~G-vg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAG-IGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEECCC
Confidence            57899999985 53 455566655 3478888877

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=82.95  E-value=16  Score=29.08  Aligned_cols=90  Identities=16%  Similarity=0.120  Sum_probs=51.8

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .+.+++-+|+|. |......++.. .++|+++|.++...+.++.    .      ..++.  ++.++...-..+|+|+..
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~----~------G~~~~--~~~~l~~~l~~aDiVI~t  217 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITE----M------GLSPF--HLSELAEEVGKIDIIFNT  217 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----c------CCeee--cHHHHHHHhCCCCEEEEC
Confidence            478999999986 44444444433 3599999999876555443    1      12221  111211112468999964


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      -     +. ..+-+...+.++||+.++-..
T Consensus       218 ~-----p~-~~i~~~~l~~~~~g~vIIDla  241 (296)
T PRK08306        218 I-----PA-LVLTKEVLSKMPPEALIIDLA  241 (296)
T ss_pred             C-----Ch-hhhhHHHHHcCCCCcEEEEEc
Confidence            2     11 123456677789987766443

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=82.45  E-value=23  Score=28.24  Aligned_cols=94  Identities=18%  Similarity=0.076  Sum_probs=55.9

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  134 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  134 (235)
                      .....++.+||-.|+|. |..+..+++.. ..++++++.++...+.+++ +   +      +... .+....  +.+.+|
T Consensus       162 ~~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~-~---g------~~~~-~~~~~~--~~~~vD  227 (329)
T cd08298         162 LAGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELARE-L---G------ADWA-GDSDDL--PPEPLD  227 (329)
T ss_pred             hhCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHH-h---C------CcEE-eccCcc--CCCccc
Confidence            34445577888888764 44545555543 3589999888876666633 1   1      1111 111111  234578


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +++....      ....+..+.+.++++|.++...
T Consensus       228 ~vi~~~~------~~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         228 AAIIFAP------VGALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             EEEEcCC------cHHHHHHHHHHhhcCCEEEEEc
Confidence            8774311      1245888999999999999754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=82.23  E-value=24  Score=28.35  Aligned_cols=97  Identities=18%  Similarity=0.179  Sum_probs=55.1

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeE
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDA  135 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~  135 (235)
                      ...++.+||-.|+|. |..+..+++.. ..++++++.++...+.+++ +.      . . .++...-... ....+.+|+
T Consensus       166 ~~~~g~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~-~g------~-~-~vi~~~~~~~~~~~~~~~d~  235 (337)
T cd05283         166 GVGPGKRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRSPSKKEDALK-LG------A-D-EFIATKDPEAMKKAAGSLDL  235 (337)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-cC------C-c-EEecCcchhhhhhccCCceE
Confidence            345567787788754 55555566653 4589999998877777643 11      1 1 1111000000 001356888


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ++....     .. ..+..+.+.|+++|.++....
T Consensus       236 v~~~~g-----~~-~~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         236 IIDTVS-----AS-HDLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             EEECCC-----Cc-chHHHHHHHhcCCCEEEEEec
Confidence            883221     11 236778899999998887643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=82.18  E-value=14  Score=29.28  Aligned_cols=96  Identities=14%  Similarity=0.138  Sum_probs=49.1

Q ss_pred             eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHH-hhhcCCCCCCCeeEEeccc-ccCCCCCCceeEEEec
Q 026688           64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEF-VQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAG  139 (235)
Q Consensus        64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~i~~~  139 (235)
                      +|+-+|+|. | .++..|++.+.  .|+.++. ++.++..++. +.....  .....+ .... .+.......+|+|+..
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~~~~~~g~~~~~~--~~~~~~-~~~~~~~~~~~~~~~d~vila   75 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR--DVTFLVR-PKRAKALRERGLVIRSD--HGDAVV-PGPVITDPEELTGPFDLVILA   75 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC--ceEEEec-HHHHHHHHhCCeEEEeC--CCeEEe-cceeecCHHHccCCCCEEEEE
Confidence            688899987 3 34556666665  7888888 6555554431 000000  001100 0000 1111112568988754


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      ---.   +.+.+++.+...+.++..++..
T Consensus        76 vk~~---~~~~~~~~l~~~~~~~~~ii~~  101 (305)
T PRK12921         76 VKAY---QLDAAIPDLKPLVGEDTVIIPL  101 (305)
T ss_pred             eccc---CHHHHHHHHHhhcCCCCEEEEe
Confidence            3222   2356778888888877655543

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=81.99  E-value=5.3  Score=29.80  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=23.5

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCC
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYS   94 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s   94 (235)
                      ..+||-+|||. | ..+..|++.+ ..+++.+|.+
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d   54 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDD   54 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCC
Confidence            57999999985 5 4455666655 3589999976

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=81.84  E-value=8.8  Score=34.78  Aligned_cols=101  Identities=14%  Similarity=0.115  Sum_probs=60.6

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCC-------CCCeeEEecccccC
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFP-------KENFLLVRADISRL  126 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~-------~~~~~~~~~d~~~~  126 (235)
                      .+|.-||+|+ | ..+..++..+.  .|+.+|.+++.++.+.+++...       +...       ..++++ ..|+.. 
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-  389 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP-TLDYAG-  389 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH-
Confidence            5799999998 4 44555566665  9999999999998877654321       1000       012222 122221 


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                         -...|+|+=. +.+.+.-..++++++.+.++|+..|.-.+..
T Consensus       390 ---~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSs  430 (715)
T PRK11730        390 ---FERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTST  430 (715)
T ss_pred             ---hcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence               2456777721 2222222358899999999998776654443

>PRK08339 short chain dehydrogenase; Provisional

Probab=81.82  E-value=13  Score=28.80  Aligned_cols=76  Identities=21%  Similarity=0.271  Sum_probs=48.4

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C----C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----A  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----~  129 (235)
                      ++++|-.|++.|   ..+..+++.+.  +|+.++.++..++...+.+....   ..++.++..|+.+..     +    .
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~~   82 (263)
T PRK08339          8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES---NVDVSYIVADLTKREDLERTVKELKN   82 (263)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCCHHHHHHHHHHHHh
Confidence            567888887655   33445555665  89999998877776665554321   235778888887632     0    1


Q ss_pred             CCceeEEEecccc
Q 026688          130 SSSIDAVHAGAAI  142 (235)
Q Consensus       130 ~~~~D~i~~~~~l  142 (235)
                      -+..|+++.+...
T Consensus        83 ~g~iD~lv~nag~   95 (263)
T PRK08339         83 IGEPDIFFFSTGG   95 (263)
T ss_pred             hCCCcEEEECCCC
Confidence            1468988876543

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=81.76  E-value=30  Score=29.11  Aligned_cols=46  Identities=7%  Similarity=0.034  Sum_probs=28.8

Q ss_pred             HhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHH
Q 026688           54 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLK   99 (235)
Q Consensus        54 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~   99 (235)
                      ...+...++.+|+-+|+|. |......+.......++.++.++.-.+
T Consensus       172 ~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~  218 (417)
T TIGR01035       172 ERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAE  218 (417)
T ss_pred             HHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            3344445578999999986 544443333322248999999876443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK08177 short chain dehydrogenase; Provisional

Probab=81.76  E-value=20  Score=26.91  Aligned_cols=68  Identities=10%  Similarity=0.065  Sum_probs=39.0

Q ss_pred             CeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------CCCC
Q 026688           63 GNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FASS  131 (235)
Q Consensus        63 ~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~  131 (235)
                      +++|-.|+..|   .++..+++.+.  +|++++.++.-.+.+++         ..++.+...|+.+..        +...
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~   70 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGPQQDTALQA---------LPGVHIEKLDMNDPASLDQLLQRLQGQ   70 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCCcchHHHHh---------ccccceEEcCCCCHHHHHHHHHHhhcC
Confidence            35676676433   23445555554  89999988755443322         124556667775531        2224


Q ss_pred             ceeEEEeccc
Q 026688          132 SIDAVHAGAA  141 (235)
Q Consensus       132 ~~D~i~~~~~  141 (235)
                      .+|+|+.+..
T Consensus        71 ~id~vi~~ag   80 (225)
T PRK08177         71 RFDLLFVNAG   80 (225)
T ss_pred             CCCEEEEcCc
Confidence            6899887643

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=81.67  E-value=9.1  Score=30.39  Aligned_cols=92  Identities=13%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhh-------hcCCCCC-------CCeeEEecccccC
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------QESNFPK-------ENFLLVRADISRL  126 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~-------~~~~~~~-------~~~~~~~~d~~~~  126 (235)
                      ++|--||+|. | ..+..++..+.  .|+++|.+++.++.+++++.       ..+....       .++. ...+... 
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~-   80 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEE-   80 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHH-
Confidence            5688899985 4 44555666654  89999999988887665432       1110000       0111 1122211 


Q ss_pred             CCCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEE
Q 026688          127 PFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFV  166 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li  166 (235)
                         ....|+|+.     .+++.    ..++.++.+.++|+..++
T Consensus        81 ---~~~aD~Vie-----av~e~~~~k~~v~~~l~~~~~~~~il~  116 (295)
T PLN02545         81 ---LRDADFIIE-----AIVESEDLKKKLFSELDRICKPSAILA  116 (295)
T ss_pred             ---hCCCCEEEE-----cCccCHHHHHHHHHHHHhhCCCCcEEE
Confidence               245688884     33322    366778888888876554

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=81.56  E-value=27  Score=28.31  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=58.6

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C-CCCCc
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P-FASSS  132 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~  132 (235)
                      ....++.+||-.|+|. |..+..+++......+++++.++...+.+++. ..     ..-+.....++.+ + . .....
T Consensus       168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga-----~~~i~~~~~~~~~~l~~~~~~~~  241 (351)
T cd08233         168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA-----TIVLDPTEVDVVAEVRKLTGGGG  241 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC-----CEEECCCccCHHHHHHHHhCCCC
Confidence            3445578888888753 55666666654222788999888877777542 11     0001111111110 0 0 12235


Q ss_pred             eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +|+++-....      ...++.+.+.|+++|.++.....
T Consensus       242 ~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~~  274 (351)
T cd08233         242 VDVSFDCAGV------QATLDTAIDALRPRGTAVNVAIW  274 (351)
T ss_pred             CCEEEECCCC------HHHHHHHHHhccCCCEEEEEccC
Confidence            8998843221      23577888999999998876543

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence

Probab=81.56  E-value=9.1  Score=22.93  Aligned_cols=58  Identities=16%  Similarity=0.196  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEE
Q 026688          148 PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF  227 (235)
Q Consensus       148 ~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  227 (235)
                      |--.+++..+-+++|..+.+..-..                          -+..++..++++.|++++.....+..+.+
T Consensus        12 P~i~~k~~l~~l~~G~~l~V~~dd~--------------------------~s~~di~~~~~~~g~~~~~~~~~~~~~~~   65 (69)
T cd03423          12 PVMMLHKKVRKMKPGDTLLVLATDP--------------------------STTRDIPKFCTFLGHELLAQETEDEPYRY   65 (69)
T ss_pred             HHHHHHHHHHcCCCCCEEEEEeCCC--------------------------chHHHHHHHHHHcCCEEEEEEEcCCEEEE
Confidence            3344667777788888776654332                          35678999999999999887766655555


Q ss_pred             EEec
Q 026688          228 TATK  231 (235)
Q Consensus       228 ~~~k  231 (235)
                      +.+|
T Consensus        66 ~I~k   69 (69)
T cd03423          66 LIRK   69 (69)
T ss_pred             EEEC
Confidence            5443

The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=81.54  E-value=16  Score=32.02  Aligned_cols=91  Identities=11%  Similarity=0.080  Sum_probs=55.6

Q ss_pred             CCeEEEecCCC-chHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeE
Q 026688           62 GGNIIDASCGS-GLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  135 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~  135 (235)
                      ...++-+|||. |.... .+.+++.  .++.+|.+++.++.+++.          ....+.+|..+..    ..-+..|.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~--~vvvId~d~~~~~~~~~~----------g~~~i~GD~~~~~~L~~a~i~~a~~  484 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGI--PLVVIETSRTRVDELRER----------GIRAVLGNAANEEIMQLAHLDCARW  484 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHC----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence            36788888876 43333 3333444  899999999988888642          4668889987632    22357786


Q ss_pred             EEecccccccCChH--HHHHHHHHhccCCcEEEEEE
Q 026688          136 VHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       136 i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~  169 (235)
                      +++.     .++..  ..+-.+.+...|...++...
T Consensus       485 viv~-----~~~~~~~~~iv~~~~~~~~~~~iiar~  515 (558)
T PRK10669        485 LLLT-----IPNGYEAGEIVASAREKRPDIEIIARA  515 (558)
T ss_pred             EEEE-----cCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence            6632     22222  22333445567777776543

>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD

Probab=81.29  E-value=9  Score=22.70  Aligned_cols=54  Identities=11%  Similarity=0.043  Sum_probs=36.0

Q ss_pred             HHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEEEEe
Q 026688          151 GVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTAT  230 (235)
Q Consensus       151 ~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~  230 (235)
                      .+++..+-+++|..+.+..-..                          -+..++..++++.|++.......+..+.++.+
T Consensus        15 ~~~~~l~~l~~g~~l~v~~d~~--------------------------~~~~~i~~~~~~~g~~~~~~~~~~~~~~i~i~   68 (69)
T cd00291          15 KTKKALEKLKSGEVLEVLLDDP--------------------------GAVEDIPAWAKETGHEVLEVEEEGGVYRILIR   68 (69)
T ss_pred             HHHHHHhcCCCCCEEEEEecCC--------------------------cHHHHHHHHHHHcCCEEEEEEEeCCEEEEEEE
Confidence            3445555678888777654432                          25678999999999998777655544444444

Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.

>PRK08507 prephenate dehydrogenase; Validated

Probab=81.17  E-value=12  Score=29.30  Aligned_cols=85  Identities=16%  Similarity=0.162  Sum_probs=47.8

Q ss_pred             eEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           64 NIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        64 ~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +|.-||+|.  |.++..+.+.+....|+++|.+++.++.+.+    .+     -+. ...+..+.  . + .|+|+..-.
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g-----~~~-~~~~~~~~--~-~-aD~Vilavp   67 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LG-----LVD-EIVSFEEL--K-K-CDVIFLAIP   67 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CC-----CCc-ccCCHHHH--h-c-CCEEEEeCc
Confidence            577788876  3456666666644579999999887776643    11     111 11122221  1 2 688885432


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEE
Q 026688          142 IHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       142 l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      ...   ....+.++.. ++++..++
T Consensus        68 ~~~---~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         68 VDA---IIEILPKLLD-IKENTTII   88 (275)
T ss_pred             HHH---HHHHHHHHhc-cCCCCEEE
Confidence            221   1355666766 77765443

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=81.00  E-value=19  Score=32.14  Aligned_cols=92  Identities=15%  Similarity=0.236  Sum_probs=57.3

Q ss_pred             CCeEEEecCCC-chHHHH-HHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeE
Q 026688           62 GGNIIDASCGS-GLFSRI-FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  135 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~~~~-l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~  135 (235)
                      ..+|+-+|||. |..... +.+.+.  .++.+|.|++.++.+++.          ...++.+|..+..    ..-+..|+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~  467 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV--KMTVLDHDPDHIETLRKF----------GMKVFYGDATRMDLLESAGAAKAEV  467 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC--CEEEEECCHHHHHHHHhc----------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence            46899999986 654443 333343  899999999998888652          3567889987642    22356787


Q ss_pred             EEecccccccCChH--HHHHHHHHhccCCcEEEEEEe
Q 026688          136 VHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       136 i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +++.     .+|.+  ..+-...+.+.|+-.++.-..
T Consensus       468 vvv~-----~~d~~~n~~i~~~ar~~~p~~~iiaRa~  499 (621)
T PRK03562        468 LINA-----IDDPQTSLQLVELVKEHFPHLQIIARAR  499 (621)
T ss_pred             EEEE-----eCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            7742     23333  223334445567666665443

>PRK07890 short chain dehydrogenase; Provisional

Probab=80.97  E-value=14  Score=28.18  Aligned_cols=75  Identities=20%  Similarity=0.193  Sum_probs=47.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C---------
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F---------  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~---------  128 (235)
                      ++++|-.|++.|   .++..+++++.  .|++++.++..++.....+...    ..++.++..|+.+.. .         
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDL----GRRALAVPTDITDEDQCANLVALALE   78 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHh----CCceEEEecCCCCHHHHHHHHHHHHH
Confidence            568888887554   23344555665  8999999887766665555432    235778888886531 0         


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      .-+..|+++.+...
T Consensus        79 ~~g~~d~vi~~ag~   92 (258)
T PRK07890         79 RFGRVDALVNNAFR   92 (258)
T ss_pred             HcCCccEEEECCcc
Confidence            01468999877643

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=80.79  E-value=11  Score=28.79  Aligned_cols=66  Identities=24%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeEE
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAV  136 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~i  136 (235)
                      ++++-+|||. | ..+..|.+.+.  .|+.+|.+++.++.....        ......+++|..+..    ..-..+|++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~~~--------~~~~~~v~gd~t~~~~L~~agi~~aD~v   70 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH--NVVLIDRDEERVEEFLAD--------ELDTHVVIGDATDEDVLEEAGIDDADAV   70 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHhhh--------hcceEEEEecCCCHHHHHhcCCCcCCEE
Confidence            3678889986 3 44455666655  899999999887773331        124667788886632    234678988


Q ss_pred             Ee
Q 026688          137 HA  138 (235)
Q Consensus       137 ~~  138 (235)
                      ++
T Consensus        71 va   72 (225)
T COG0569          71 VA   72 (225)
T ss_pred             EE
Confidence            86

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=80.63  E-value=14  Score=24.50  Aligned_cols=92  Identities=20%  Similarity=0.101  Sum_probs=54.7

Q ss_pred             eEEEecCCCc-h-HHHHHHHcCCCceEE-EEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           64 NIIDASCGSG-L-FSRIFAKSGLFSLVV-ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        64 ~vLdiG~G~G-~-~~~~l~~~~~~~~v~-~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      +|.-||+|.. . ....+.+..+..++. .+|.++...+.+.+..         .+. ...|..++. .....|+|+...
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~---------~~~-~~~~~~~ll-~~~~~D~V~I~t   70 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY---------GIP-VYTDLEELL-ADEDVDAVIIAT   70 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT---------TSE-EESSHHHHH-HHTTESEEEEES
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh---------ccc-chhHHHHHH-HhhcCCEEEEec
Confidence            5778899763 2 233555554555655 6899988777765443         222 445555432 234789998533


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .-      ..-...+..+++-|-.+++.-|..
T Consensus        71 p~------~~h~~~~~~~l~~g~~v~~EKP~~   96 (120)
T PF01408_consen   71 PP------SSHAEIAKKALEAGKHVLVEKPLA   96 (120)
T ss_dssp             SG------GGHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CC------cchHHHHHHHHHcCCEEEEEcCCc
Confidence            22      223556777777777777765543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=80.51  E-value=17  Score=34.40  Aligned_cols=71  Identities=21%  Similarity=0.071  Sum_probs=42.4

Q ss_pred             CCeEEEecCCC-chHHHHHHHcCCCce-------------EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--
Q 026688           62 GGNIIDASCGS-GLFSRIFAKSGLFSL-------------VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--  125 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~~~~l~~~~~~~~-------------v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--  125 (235)
                      .++|+-+|||. |......+...++..             |+.+|+++...+.+.+..        +++..+..|+.+  
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~--------~~~~~v~lDv~D~e  640 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI--------ENAEAVQLDVSDSE  640 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc--------CCCceEEeecCCHH
Confidence            57999999985 665555544444434             888999876655444332        244455555543  


Q ss_pred             -CCCCCCceeEEEecc
Q 026688          126 -LPFASSSIDAVHAGA  140 (235)
Q Consensus       126 -~~~~~~~~D~i~~~~  140 (235)
                       +.-.-...|+|++..
T Consensus       641 ~L~~~v~~~DaVIsal  656 (1042)
T PLN02819        641 SLLKYVSQVDVVISLL  656 (1042)
T ss_pred             HHHHhhcCCCEEEECC
Confidence             211113589999653

>PRK07102 short chain dehydrogenase; Provisional

Probab=80.50  E-value=13  Score=28.32  Aligned_cols=73  Identities=14%  Similarity=0.063  Sum_probs=43.8

Q ss_pred             CeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C------CCCc
Q 026688           63 GNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F------ASSS  132 (235)
Q Consensus        63 ~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~------~~~~  132 (235)
                      ++++-.|+..|   .++..+++.+.  +|++++.++.-.+...+.+....   ..++.++.+|+.+.. .      ....
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~   76 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG---AVAVSTHELDILDTASHAAFLDSLPAL   76 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc---CCeEEEEecCCCChHHHHHHHHHHhhc
Confidence            46777775443   23334455554  89999998876655444443321   346888889987632 0      0134


Q ss_pred             eeEEEecc
Q 026688          133 IDAVHAGA  140 (235)
Q Consensus       133 ~D~i~~~~  140 (235)
                      +|+++.+.
T Consensus        77 ~d~vv~~a   84 (243)
T PRK07102         77 PDIVLIAV   84 (243)
T ss_pred             CCEEEECC
Confidence            78888654

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=80.34  E-value=29  Score=27.93  Aligned_cols=97  Identities=21%  Similarity=0.261  Sum_probs=57.5

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc------cccCC
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD------ISRLP  127 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d------~~~~~  127 (235)
                      .....++.+||..|+|. |..+..+++.. ... +++++.++...+.+++.    +   .  ..+...+      +... 
T Consensus       154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~----g---~--~~~~~~~~~~~~~~~~~-  222 (343)
T cd08236         154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAREL----G---A--DDTINPKEEDVEKVREL-  222 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc----C---C--CEEecCccccHHHHHHH-
Confidence            33445677899988765 66666666654 344 89998888766665431    1   1  1111111      1111 


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .....+|+++...      .....+..+.+.|+++|.++...
T Consensus       223 ~~~~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         223 TEGRGADLVIEAA------GSPATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             hCCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence            1234589988431      12345778899999999988765

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=80.34  E-value=17  Score=30.69  Aligned_cols=101  Identities=11%  Similarity=0.060  Sum_probs=57.5

Q ss_pred             HHHHHHHhhcCC-CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           48 KEFELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        48 ~~~~~i~~~~~~-~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ..++.+...... ..+++|+-+|+|. |......++.. .++|+.+|.++.-...+...          ...+  .++.+
T Consensus       197 s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~----------G~~v--~~l~e  263 (425)
T PRK05476        197 SLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMD----------GFRV--MTMEE  263 (425)
T ss_pred             hhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhc----------CCEe--cCHHH
Confidence            334444443222 2578999999987 55444444432 45899999998654333221          1111  22222


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHH-HHHHhccCCcEEEEEEe
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVA-EISRVLRPGGVFVGTTY  170 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~-~~~~~L~pgG~li~~~~  170 (235)
                      .   ....|+|+...     .+ ...+. .....+|+|+.++....
T Consensus       264 a---l~~aDVVI~aT-----G~-~~vI~~~~~~~mK~GailiNvG~  300 (425)
T PRK05476        264 A---AELGDIFVTAT-----GN-KDVITAEHMEAMKDGAILANIGH  300 (425)
T ss_pred             H---HhCCCEEEECC-----CC-HHHHHHHHHhcCCCCCEEEEcCC
Confidence            1   13579988643     12 23444 68888999988776543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=80.34  E-value=15  Score=32.60  Aligned_cols=94  Identities=11%  Similarity=0.170  Sum_probs=58.0

Q ss_pred             CCeEEEecCCC-chHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeE
Q 026688           62 GGNIIDASCGS-GLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  135 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~  135 (235)
                      ...|+-+|+|. |.... .+.+.+.  .++.+|.+++.++.+++.          ...++.+|..+..    ..-++.|+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~  467 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKM--RITVLERDISAVNLMRKY----------GYKVYYGDATQLELLRAAGAEKAEA  467 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCC--CEEEEECCHHHHHHHHhC----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence            35788877775 44333 3333343  899999999998888652          3567889987642    22356777


Q ss_pred             EEecccccccCChHH--HHHHHHHhccCCcEEEEEEecc
Q 026688          136 VHAGAAIHCWSSPST--GVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       136 i~~~~~l~~~~~~~~--~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +++.     .+|.+.  .+-...+.+.|...++....+.
T Consensus       468 vv~~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~  501 (601)
T PRK03659        468 IVIT-----CNEPEDTMKIVELCQQHFPHLHILARARGR  501 (601)
T ss_pred             EEEE-----eCCHHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            7742     333332  2333455567888887755543

>PRK05867 short chain dehydrogenase; Provisional

Probab=80.30  E-value=14  Score=28.34  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=48.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|-.|++.|   ..+..+++.+.  +|..++.+++.++...+.+...    ..++.++..|+.+..     +     
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTS----GGKVVPVCCDVSQHQQVTSMLDQVTA   82 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            578888888655   33445555555  8999999887777666655443    235677788886532     0     


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      .-+..|+++.+...
T Consensus        83 ~~g~id~lv~~ag~   96 (253)
T PRK05867         83 ELGGIDIAVCNAGI   96 (253)
T ss_pred             HhCCCCEEEECCCC
Confidence            01478999976554

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=80.29  E-value=6.1  Score=28.91  Aligned_cols=97  Identities=16%  Similarity=0.274  Sum_probs=56.7

Q ss_pred             eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh-------cCCCC-------CCCeeEEecccccCC
Q 026688           64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------ESNFP-------KENFLLVRADISRLP  127 (235)
Q Consensus        64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~~~~-------~~~~~~~~~d~~~~~  127 (235)
                      +|.-+|+|+ | ..+..++..+.  +|+.+|.+++.++.+++++..       .+...       ..++. ...|+.+. 
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-   76 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-   76 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence            466789986 5 44445555555  999999999999988876654       11000       01222 33444332 


Q ss_pred             CCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEEEecc
Q 026688          128 FASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                         ...|+|+     +..+..    ..+++++.+.+.|+..|.-.+...
T Consensus        77 ---~~adlVi-----Eai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl  117 (180)
T PF02737_consen   77 ---VDADLVI-----EAIPEDLELKQELFAELDEICPPDTILASNTSSL  117 (180)
T ss_dssp             ---CTESEEE-----E-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred             ---hhhheeh-----hhccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence               2578877     444332    578999999999988877655443

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.23  E-value=13  Score=29.80  Aligned_cols=41  Identities=29%  Similarity=0.416  Sum_probs=30.5

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEF  104 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~  104 (235)
                      -.+|.-||+|. | .++..+++.+.  +|+++|.+++.++.+++.
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~   46 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGL--QVVLIDVMEGALERARGV   46 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHH
Confidence            35788899986 3 44555666554  899999999988887764

>PRK06172 short chain dehydrogenase; Provisional

Probab=80.15  E-value=16  Score=27.97  Aligned_cols=75  Identities=21%  Similarity=0.267  Sum_probs=47.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|-.|++.|   .++..+++.+.  +|+.++.++..++...+.+...    ..++.++..|+.+..     +     
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~i~~~~~~~~~   80 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREA----GGEALFVACDVTRDAEVKALVEQTIA   80 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            578888887554   23334555554  8999999887766665555433    336788888887531     0     


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      ..+..|+++.+...
T Consensus        81 ~~g~id~li~~ag~   94 (253)
T PRK06172         81 AYGRLDYAFNNAGI   94 (253)
T ss_pred             HhCCCCEEEECCCC
Confidence            01367999977554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	235
3mgg_A	276	Crystal Structure Of Methyl Transferase From Methan		4e-07
3bkw_A	243	Crystal Structure Of S-Adenosylmethionine Dependent		3e-06
3ccf_A	279	Crystal Structure Of Putative Methyltransferase (Yp		7e-06
4hg2_A	257	The Structure Of A Putative Type Ii Methyltransfera		1e-05
1vl5_A	260	Crystal Structure Of A Putative Methyltransferase (		2e-05
1ve3_A	227	Crystal Structure Of Ph0226 Protein From Pyrococcus		1e-04
3dlc_A	219	Crystal Structure Of A Putative S-Adenosyl-L-Methio		2e-04
3dh0_A	219	Crystal Structure Of A Sam Dependent Methyltransfer		7e-04

>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
           G  +++A CG G  + I AK+   + + ++D S   L++  E    E N  K N   ++A
Sbjct: 38  GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE--NTEKNGIK-NVKFLQA 94
Query: 122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 174
           +I  LPF  SS D +     +    SP   +  + +VL+PG    GT  +++G
Sbjct: 95  NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPG----GTITVIEG 143

>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent Methyltransferase (Np_104914.1) From Mesorhizobium Loti At 1.60 A Resolution Length = 243

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 49  EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 108
           E+  ++  L  V G  I+D  CG G F R   + G  S V+ LD SE  L +        
Sbjct: 31  EWPALRAXLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKXLARA------R 83
Query: 109 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 168
           +  P       RAD+ +L     S D  ++  A+H     +     + + L PGG FV +
Sbjct: 84  AAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFS 143
Query: 169 T 169
           T
Sbjct: 144 T 144

>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 25/152 (16%)
Query: 35  RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 94
           + +FVW       +  E +   L P  G  I+D  CG+G  +   A+SG  + V+  D +
Sbjct: 38  KHSFVW-------QYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNA 88
Query: 95  ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 154
              +++  +      N+P  +F +  A   R+      +DAV + A +H    P   +A 
Sbjct: 89  ATXIEKARQ------NYPHLHFDVADARNFRV---DKPLDAVFSNAXLHWVKEPEAAIAS 139
Query: 155 ISRVLRPGGVFVG-------TTYIVDGPFNLI 179
           I + L+ GG FV          YI++  +N +
Sbjct: 140 IHQALKSGGRFVAEFGGKGNIKYILEALYNAL 171

>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From Anaeromyxobacter Dehalogenans. Length = 257

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 63  GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122
           G+ +D  CGSG  S   A+   F  V A+D  E  ++Q           P+  + +  A+
Sbjct: 41  GDALDCGCGSGQASLGLAE--FFERVHAVDPGEAQIRQAL-------RHPRVTYAVAPAE 91
Query: 123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170
            + LP   +S+D   A  A H W       AE+ RV RPG VF   TY
Sbjct: 92  DTGLP--PASVDVAIAAQAXH-WFDLDRFWAELRRVARPGAVFAAVTY 136

>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 61  LGGN--IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL 118
           L GN  ++D + G G  +  FA       VVA D +E++LK    F++   +   +    
Sbjct: 35  LKGNEEVLDVATGGGHVANAFAP--FVKKVVAFDLTEDILKVARAFIEGNGH---QQVEY 89
Query: 119 VRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 163
           V+ D  + PF       V    A H + +P++ V+E  RVL+ GG
Sbjct: 90  VQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGG 134

>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 52  LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 111
           L+  Y K    G ++D +CG G FS +    G    VV +D SE+ +++  E+ +   + 
Sbjct: 31  LLXKYXKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDXIRKAREYAKSRES- 85
Query: 112 PKENFLLVRADISRLPFASSSID-AVHAGAAIHCWSSPSTGV-AEISRVLRPGGVFV 166
              N   +  D  +L F   + D  +   + +H        V  E+ RVL+P G F+
Sbjct: 86  ---NVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139

>pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 60  VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 119
           +  G  ID   G G  S   AK   FS + ALD+S++  +   + +  ++N   +   +V
Sbjct: 42  ITAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHXNEIALKNIA-DANL-NDRIQIV 98
Query: 120 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171
           + D+  +P   +  D + +  ++  W   +T   EI R+L+ G    G TYI
Sbjct: 99  QGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSG----GKTYI 146

>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase From Aquifex Aeolicus Length = 219

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 62  GGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120
           G  ++D   G+G +    +K  G    V A+D  E M+   +E V +      +N  +++
Sbjct: 38  GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK---LGLKNVEVLK 94
Query: 121 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 161
           ++ +++P   +++D +      H  S P   + E+ RV +P
Sbjct: 95  SEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKP 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-26
3ege_A	261	Putative methyltransferase from antibiotic biosyn	5e-25
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-24
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	3e-24
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	6e-24
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	4e-23
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-22
3i9f_A	170	Putative type 11 methyltransferase; structural gen	8e-22
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	1e-21
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	2e-21
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	6e-21
1xxl_A	239	YCGJ protein; structural genomics, protein structu	8e-21
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	9e-21
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	1e-20
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-20
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	4e-20
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-18
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	3e-18
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	3e-18
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	4e-18
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	6e-18
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-17
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	2e-17
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	3e-17
3f4k_A	257	Putative methyltransferase; structural genomics, P	4e-17
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-16
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-16
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-16
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	2e-16
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	8e-16
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	4e-15
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	1e-14
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-14
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	3e-14
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-13
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	1e-13
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	5e-13
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	8e-13
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	8e-13
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	5e-12
3ocj_A	305	Putative exported protein; structural genomics, PS	1e-11
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-11
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	9e-11
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	1e-10
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	1e-10
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	2e-10
3cc8_A	230	Putative methyltransferase; structural genomics, j	3e-10
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	4e-10
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	7e-10
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	8e-10
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-09
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	2e-09
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	2e-09
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	2e-09
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	4e-09
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	4e-09
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	5e-09
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	8e-09
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	8e-09
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	9e-09
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	2e-08
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	4e-08
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	5e-08
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	1e-07
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	1e-07
3lcc_A	235	Putative methyl chloride transferase; halide methy	1e-07
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	2e-07
2p7i_A	250	Hypothetical protein; putative methyltransferase,	8e-06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	4e-05
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	9e-05
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	3e-04
1im8_A	244	YECO; methyltransferase, adenosylhomocysteine, str	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	8e-04

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score =  101 bits (253), Expect = 2e-26
 Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 22/192 (11%)

Query: 24  PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 83
            F +   +  W                   + Y+K      ++D  CG G  +   +++G
Sbjct: 25  EFWNQNSQEMWDSGSR-------STIIPFFEQYVKK--EAEVLDVGCGDGYGTYKLSRTG 75

Query: 84  LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 143
                V +D SE M+++       +      +   ++ D+S LPF +   +A+ A  ++ 
Sbjct: 76  --YKAVGVDISEVMIQKG------KERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLE 127

Query: 144 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE 203
               P   + EI RVL+  G                 + RL  ++++        +   E
Sbjct: 128 WTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVV-----CNTMMPWE 182

Query: 204 IEDLCRACGLVD 215
            E L +  G   
Sbjct: 183 FEQLVKEQGFKV 194

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 98.4 bits (245), Expect = 5e-25
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 42  GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 101
                 +    +   L    G  I D   G+G +S   A  GLF  V A++ S  M +Q 
Sbjct: 15  TRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF--VYAVEPSIVMRQQA 72

Query: 102 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 161
                                   L     S+D V +  AIH +S       E+ R++R 
Sbjct: 73  ----VVHPQVE-----WFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRD 123

Query: 162 GGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER 202
           G + +      D       +       + + +  +  L E+
Sbjct: 124 GTIVL---LTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQ 161

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 95.6 bits (238), Expect = 2e-24
 Identities = 33/175 (18%), Positives = 70/175 (40%), Gaps = 8/175 (4%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
            G  ID   G G  S   AK   FS + ALD+S++M +   + +   +   +     V+ 
Sbjct: 44  AGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIALKNIADANLNDRIQI--VQG 100

Query: 122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 181
           D+  +P   +  D + +  ++  W   +T   EI R+L+ GG         +        
Sbjct: 101 DVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSIS 160

Query: 182 SRLLRQN---MMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-GF-VMFTATK 231
           + ++R+N         + +  +    +++    G+  ++      GF ++ + T 
Sbjct: 161 AEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKTD 215

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 96.0 bits (239), Expect = 3e-24
 Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 11/184 (5%)

Query: 48  KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 107
            +   +           ++D + G G  +  FA       VVA D +E++LK    F++ 
Sbjct: 24  SDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG 81

Query: 108 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 167
                 +    V+ D  ++PF       V    A H + +P++ V+E  RVL+ GG  + 
Sbjct: 82  N---GHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL- 137

Query: 168 TTYIVDGPFNLIPFSRLLRQNMMQI--SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFV 225
              +VD          +    + +      +    + +   +    G    +        
Sbjct: 138 ---LVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTF 194

Query: 226 MFTA 229
           +F  
Sbjct: 195 IFED 198

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 95.7 bits (238), Expect = 6e-24
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 11/164 (6%)

Query: 57  LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 116
             P  G  +++A CG G  + I AK+   + + ++D S   L++  E  ++      +N 
Sbjct: 35  YPP--GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN---GIKNV 89

Query: 117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 176
             ++A+I  LPF  SS D +     +    SP   +  + +VL+PGG          G  
Sbjct: 90  KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG-DHGSC 148

Query: 177 NLIPFSRLLRQNMMQISGSYT-----FLSEREIEDLCRACGLVD 215
              P  +   +    +           L  R+I  L +  G   
Sbjct: 149 YFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 93.1 bits (231), Expect = 4e-23
 Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 9/170 (5%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
               ++   G+G  +      G     +ALD    ML+      +Q+         +V+A
Sbjct: 40  EPVFLELGVGTGRIALPLIARGYR--YIALDADAAMLEV----FRQKIAGVDRKVQVVQA 93

Query: 122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 181
           D   +P    S+  V      H        +AE  RVL+PGG  +      +        
Sbjct: 94  DARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQ 153

Query: 182 SRLLRQNMMQ---ISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFT 228
            R       +   +         +E+E+  R  GL        R     T
Sbjct: 154 ERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTREVARWREERT 203

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 49  EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 108
           E+  ++  L  V G  I+D  CG G F R   + G  S V+ LD SE ML +        
Sbjct: 31  EWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARA------R 83

Query: 109 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 168
           +  P       RAD+ +L     S D  ++  A+H     +     + + L PGG FV +
Sbjct: 84  AAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFS 143

Query: 169 T 169
           T
Sbjct: 144 T 144

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 87.4 bits (217), Expect = 8e-22
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 17/117 (14%)

Query: 57  LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 116
           +     G I+D  CG+G + +   +    + +  +D +   LK+            KE F
Sbjct: 13  IFEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEV-----------KEKF 59

Query: 117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173
             V           +S+D +    + H        ++E+ R+L+  G  +    I+D
Sbjct: 60  DSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVI----IID 112

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 88.3 bits (219), Expect = 1e-21
 Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 23/161 (14%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
            G  ++   G+G F+            + ++ SE M +             K    +++ 
Sbjct: 48  EGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIA----------RKRGVFVLKG 91

Query: 122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 181
               LP    S D       I     P   + E  R+L+ GG  +    +          
Sbjct: 92  TAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLI----VGIVDRES-FL 146

Query: 182 SRLLRQNMMQIS--GSYTFLSEREIEDLCRACGLVDFKCTR 220
            R   +N  +     +  F S  E+ DL R  G  +FK  +
Sbjct: 147 GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 87.6 bits (217), Expect = 2e-21
 Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 40  WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 99
                 P+     +K   +  L   ++D   G  L          +     ++ S+  LK
Sbjct: 3   KTIIRQPQLY-RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLK 60

Query: 100 QCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISR 157
           +   F ++ +   K N    + DI +LPF   S+  V++   I           + EI R
Sbjct: 61  KAENFSRENN--FKLNI--SKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKR 116

Query: 158 VLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS----YTFLSEREIEDLCRACGL 213
           VL+PGG+                  ++     +Q+       ++++S  E +   +   +
Sbjct: 117 VLKPGGLACINFLTTKDE-RYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKV 175

Query: 214 VDFK----------CTRNRGFVMFTATKPSQN 235
           +  +              +G+V + A K S++
Sbjct: 176 LFKEDRVVERINDGLKIKQGYVDYIAEKFSKS 207

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 87.3 bits (216), Expect = 6e-21
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 47  EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 106
             E+  +K  L       ++D  CG G      A+ G    V+ +D SE ML +      
Sbjct: 30  AGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEA----- 83

Query: 107 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
            +           +  I  +     + + V +  A+H  +S      ++   L+  G F+
Sbjct: 84  -KRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFI 142

Query: 167 GTT 169
            + 
Sbjct: 143 FSV 145

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 86.4 bits (214), Expect = 8e-21
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 11/170 (6%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
              ++D   G+G  +  F+        + +D ++ M++    F Q++     EN    + 
Sbjct: 22  EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK---GVENVRFQQG 76

Query: 122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 181
               LPF   S D +    A H +S     V E++RVL+  G F+    +VD      P 
Sbjct: 77  TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL----LVDHYAPEDPV 132

Query: 182 SRLLRQNMMQI--SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTA 229
                 ++ ++         S  E + +  A  L      +    + + +
Sbjct: 133 LDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQYDS 182

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 86.1 bits (213), Expect = 9e-21
 Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 21/208 (10%)

Query: 38  FVWGGFPGPEKEFELMKGYLKPVL---GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 94
           FV G     ++ F   +  L+ V+    GN+++   G+G  +     +G    V  ++ S
Sbjct: 19  FVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT--VYGIEPS 76

Query: 95  ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA- 153
             M          +   PK  F +   D        +SID + +  A H  +     VA 
Sbjct: 77  REMRMIA------KEKLPK-EFSITEGDFLSFEV-PTSIDTIVSTYAFHHLTDDEKNVAI 128

Query: 154 -EISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT----FLSEREIEDLC 208
            + S++L  GG  V    I              +Q       +      +     ++ + 
Sbjct: 129 AKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF 188

Query: 209 RACGL-VDFKCTRNRGFVMFTATKPSQN 235
              G  V F    +  +VM  ATK  ++
Sbjct: 189 ENNGFHVTFTRLNHFVWVM-EATKQLEH 215

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 85.7 bits (212), Expect = 1e-20
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 10/140 (7%)

Query: 51  ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 110
            L+  Y+K    G ++D +CG G FS +    G    VV +D SE+M+++  E+ +    
Sbjct: 30  PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFE--VVGVDISEDMIRKAREYAKSR-- 83

Query: 111 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT 168
             + N   +  D  +L F   + D V    +I  +     +    E+ RVL+P G F+  
Sbjct: 84  --ESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 141

Query: 169 TYIVDGPFNLIPFSRLLRQN 188
              +      +  S ++ Q 
Sbjct: 142 FTDLRELLPRLKESLVVGQK 161

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 84.9 bits (210), Expect = 2e-20
 Identities = 20/177 (11%), Positives = 48/177 (27%), Gaps = 23/177 (12%)

Query: 40  WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 99
            G     E    ++       + G I+D   G+G ++   A  G    +  L+ +  +++
Sbjct: 20  LGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVE 77

Query: 100 QCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC--WSSPSTGVAEISR 157
              +        P   F      I+ L  +      + A  ++           +  +  
Sbjct: 78  LARQ------THPSVTF--HHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRM 129

Query: 158 VLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 214
            +  GG  + + +                + M     +       E+       G  
Sbjct: 130 AVEDGGGLLMSFFSGPSL-----------EPMYHPVATAYRWPLPELAQALETAGFQ 175

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 84.1 bits (208), Expect = 4e-20
 Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 16/161 (9%)

Query: 47  EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 106
            +E   +KG L P  G ++++   G+G + R           V ++ SE ML        
Sbjct: 24  AEEERALKGLLPP--GESLLEVGAGTGYWLRRLPYPQ----KVGVEPSEAMLAVGRRRA- 76

Query: 107 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
                       VRA    LPF   S D V     +         + E  RVLRPGG  V
Sbjct: 77  -------PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALV 129

Query: 167 GTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 207
                   P+    + RL  + ++  +    FL+  +++ L
Sbjct: 130 VGVLEALSPW-AALYRRLGEKGVLPWAQ-ARFLAREDLKAL 168

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 79.5 bits (196), Expect = 2e-18
 Identities = 24/186 (12%), Positives = 49/186 (26%), Gaps = 13/186 (6%)

Query: 34  WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 93
                        +   + +   +       ++D  CG G   R  A  G     V +D 
Sbjct: 25  IDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG--IEAVGVDG 82

Query: 94  SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA 153
              ++       +             +   +++P      D + A  A+         ++
Sbjct: 83  DRTLVDAA----RAAGAGEVHLASYAQLAEAKVPVGKD-YDLICANFALL-HQDIIELLS 136

Query: 154 EISRVLRPGGVFVGTT----YIVDGP-FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 208
            +  +L PGG  V  T     + DG   +                  + F +     +  
Sbjct: 137 AMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNAL 196

Query: 209 RACGLV 214
              GL 
Sbjct: 197 DMAGLR 202

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 80.2 bits (198), Expect = 3e-18
 Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 57  LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 116
           L P  G  I+D  CG+G  +   A+SG  + V+  D +  M+++         N+P  +F
Sbjct: 53  LNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKA------RQNYPHLHF 104

Query: 117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 176
            +  AD          +DAV + A +H    P   +A I + L+ GG FV       G  
Sbjct: 105 DV--ADARNFRVDKP-LDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG---GKG 158

Query: 177 NLIPFSRLLRQNMMQIS-------GSYTFLSEREIEDLCRACGLVD 215
           N+      L   +  +          + F S  E  ++    G   
Sbjct: 159 NIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDV 204

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 78.7 bits (194), Expect = 3e-18
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 30  YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 89
           Y + WR   +         E  L+        G  I+DA CG G      +K G    V+
Sbjct: 19  YAQRWRN--LAAAGNDIYGEARLIDAMAPR--GAKILDAGCGQGRIGGYLSKQGHD--VL 72

Query: 90  ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS 149
             D    ++         + +FP+  +  V  D+S    + +  D + +   +  + +  
Sbjct: 73  GTDLDPILIDYA------KQDFPEARW--VVGDLSVDQISETDFDLIVSAGNVMGFLAED 124

Query: 150 TG---VAEISRVLRPGGVFV 166
                +A I R L   G  V
Sbjct: 125 GREPALANIHRALGADGRAV 144

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 79.8 bits (197), Expect = 4e-18
 Identities = 41/199 (20%), Positives = 67/199 (33%), Gaps = 19/199 (9%)

Query: 29  IYERGWRQNFVWG--GFPGPEKEFE----------LMKGYLKPVLGGNIIDASCGSGLFS 76
            + R W +N  +G     G +   +          +    ++   G  ++D  CG G  +
Sbjct: 19  PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRS--GDRVLDVGCGIGKPA 76

Query: 77  RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 136
              A +     V  +  S   + Q            +  F    AD   LPF  +S DAV
Sbjct: 77  VRLATARDVR-VTGISISRPQVNQANARATAAGLANRVTF--SYADAMDLPFEDASFDAV 133

Query: 137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY 196
            A  ++H        + E++RVLRPGG      +++  P       +          G  
Sbjct: 134 WALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVE--GAKKEAVDAFRAGGGVL 191

Query: 197 TFLSEREIEDLCRACGLVD 215
           +     E E   R   LV 
Sbjct: 192 SLGGIDEYESDVRQAELVV 210

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 79.1 bits (195), Expect = 6e-18
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 14/117 (11%)

Query: 51  ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 110
             ++ YLK      ++D   G+G +S    + G    VV +D S+ ML+   E       
Sbjct: 46  SFLEEYLKN--PCRVLDLGGGTGKWSLFLQERGFE--VVLVDPSKEMLEVARE------- 94

Query: 111 FPKENFLLVRADISRLPFASSSIDAVHA-GAAIHCWSSPSTGVAEISRVLRPGGVFV 166
             K    +V A    LPF S + +AV A G  +    +     +EI RVL P G+ +
Sbjct: 95  --KGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 149

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 77.1 bits (190), Expect = 2e-17
 Identities = 29/225 (12%), Positives = 63/225 (28%), Gaps = 38/225 (16%)

Query: 26  MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 85
               ++  +  +                          +I+D   G+GL S    +    
Sbjct: 24  FIPCFDDFYGVSVSIASVDTE---------------NPDILDLGAGTGLLSAFLMEKYPE 68

Query: 86  SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 145
           +    +D SE ML+       +           + AD S+  F     D V +  +IH  
Sbjct: 69  ATFTLVDMSEKMLEIA-----KNRFRGNLKVKYIEADYSKYDFEEKY-DMVVSALSIHHL 122

Query: 146 SSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS-------- 195
                         +L+  G+F+    +      +   ++ + +  ++ SG         
Sbjct: 123 EDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAG 182

Query: 196 ------YTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPS 233
                    +   +  +  +  G  D  C  +   F +    K  
Sbjct: 183 YERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKTE 227

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 76.7 bits (189), Expect = 2e-17
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 45  GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYE 103
            PEK  +     LK   G  ++D   G+G +    +K  G    V A+D  E M+   +E
Sbjct: 25  DPEKVLKEFG--LKE--GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE 80

Query: 104 FVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 163
            V +      +N  +++++ +++P   +++D +      H  S P   + E+ RV +P  
Sbjct: 81  KVNKL---GLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFA 137

Query: 164 VFV 166
              
Sbjct: 138 YLA 140

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 76.4 bits (188), Expect = 3e-17
 Identities = 35/190 (18%), Positives = 57/190 (30%), Gaps = 38/190 (20%)

Query: 55  GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 114
           G L    G  I++  CG+G  +     +G    V A D S  +  +    + +       
Sbjct: 39  GELPA--GAKILELGCGAGYQAEAMLAAGFD--VDATDGSPELAAEASRRLGRPV----- 89

Query: 115 NFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTG--VAEISRVLRPGGVFVGTTYIV 172
                     +L    +  DAV A A +           +  I R L+PGG+F  +    
Sbjct: 90  ----RTMLFHQLDAIDA-YDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG 144

Query: 173 DGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR----------NR 222
           +G        +L R         Y + SE  +       G                    
Sbjct: 145 EGE----GRDKLARY--------YNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELA 192

Query: 223 GFVMFTATKP 232
            F+  +  KP
Sbjct: 193 QFLHVSVRKP 202

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 76.8 bits (189), Expect = 4e-17
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 13/148 (8%)

Query: 21  FRMPFMSFIYERGWRQNFVWGGFPGPE--KEFELMKGYLKPVLGGNIIDASCGSGLFSRI 78
           F   F+   ++   RQ     G   PE  ++       L       I D  CG+G  +  
Sbjct: 11  FDFSFICNYFKLLKRQ-----GPGSPEATRKAVSFINELTD--DAKIADIGCGTGGQTLF 63

Query: 79  FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 138
            A       +  +D   + ++   E   + +   +     +   +  LPF +  +D + +
Sbjct: 64  LADYVKGQ-ITGIDLFPDFIEIFNENAVKANCADRVKG--ITGSMDNLPFQNEELDLIWS 120

Query: 139 GAAIHCWSSPSTGVAEISRVLRPGGVFV 166
             AI+       G+ E S+ L+ GG   
Sbjct: 121 EGAIYN-IGFERGMNEWSKYLKKGGFIA 147

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 74.9 bits (184), Expect = 1e-16
 Identities = 29/190 (15%), Positives = 54/190 (28%), Gaps = 21/190 (11%)

Query: 51  ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 110
             ++      + G++++ + G+G ++R  +       V ALD S  M+ +          
Sbjct: 36  AALERLRAGNIRGDVLELASGTGYWTRHLSGLADR--VTALDGSAEMIAEA-----GRHG 88

Query: 111 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTG--VAEISRVLRPGGVFVGT 168
                F   + D+          DAV     +              +   + PGGV    
Sbjct: 89  LDNVEF--RQQDLFDWTP-DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFV 145

Query: 169 TYIVDGPFNL--------IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 220
                             +   R L+           F S  E+ +   A G        
Sbjct: 146 DVTDHERRLEQQDDSEPEVAVRRTLQDG-RSFRIVKVFRSPAELTERLTALGWSCSVDEV 204

Query: 221 NRGFVMFTAT 230
           + GF+  T  
Sbjct: 205 HPGFLYATCR 214

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 75.9 bits (186), Expect = 2e-16
 Identities = 29/161 (18%), Positives = 50/161 (31%), Gaps = 18/161 (11%)

Query: 17  ATEFFRMPFMSFIYERGWRQNFVWGGFPG-PEKEFELMKGYLKPVLGGNIIDASCGSGLF 75
           ++ F    F S  Y    R        P  P   ++++  Y        ++D  CG G  
Sbjct: 1   SSTFSASDFNSERYSSS-R--------PSYPSDFYKMIDEYH-DGERKLLVDVGCGPGTA 50

Query: 76  SRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRAD----ISRLPFA 129
           +   A+    F  ++  D S  M+K      +   + +   +F +  +D    +      
Sbjct: 51  TLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110

Query: 130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170
              ID + A    H W             LR  G      Y
Sbjct: 111 KQKIDMITAVECAH-WFDFEKFQRSAYANLRKDGTIAIWGY 150

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 75.3 bits (185), Expect = 2e-16
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 44  PGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY 102
           PG  +       ++  +     I D  CG+G  + + A       V  LD+    +    
Sbjct: 28  PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFLSGFIDIFN 86

Query: 103 EFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG 162
              +Q     +     +   +  LPF +  +D + +  AI+       G+ E  + L+ G
Sbjct: 87  RNARQSG--LQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFER-GLNEWRKYLKKG 143

Query: 163 GVFV 166
           G   
Sbjct: 144 GYLA 147

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 75.0 bits (184), Expect = 2e-16
 Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 18/181 (9%)

Query: 52  LMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESN 110
           L+    K     +I+D  CG G    +        S    +D  E +L +  E  +    
Sbjct: 13  LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-- 70

Query: 111 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV---- 166
               +   +  D + +       D     A +   ++P T + ++   ++ GG  +    
Sbjct: 71  --PYDSEFLEGDATEIELNDK-YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 127

Query: 167 -----GTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE---REIEDLCRACGLVDFKC 218
                  +Y++DG          + Q + +              +I       G+ + +C
Sbjct: 128 HWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIEC 187

Query: 219 T 219
            
Sbjct: 188 R 188

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 72.8 bits (178), Expect = 8e-16
 Identities = 28/191 (14%), Positives = 49/191 (25%), Gaps = 27/191 (14%)

Query: 30  YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 89
           Y   W +     G          +   L P     +++A CG G  +  F          
Sbjct: 21  YRHPWARVLS--GPDPELTFDLWLSRLLTP--QTRVLEAGCGHGPDAARFGPQAAR--WA 74

Query: 90  ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP 148
           A D+S  +LK         +N P  +          LP    +    + +         P
Sbjct: 75  AYDFSPELLKLA------RANAPHADVYEWNGK-GELPAGLGAPFGLIVSRRG------P 121

Query: 149 STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE---IE 205
           ++ +  +  +  P   F+     V    N+      L      I               E
Sbjct: 122 TSVILRLPELAAPDAHFL----YVGPRLNVPEVPERLAAVGWDIVAEDHVSVLAHAPTWE 177

Query: 206 DLCRACGLVDF 216
           D       +  
Sbjct: 178 DWQMRGEFMGK 188

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 71.0 bits (174), Expect = 4e-15
 Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 12/144 (8%)

Query: 29  IYERGWRQNFVWGGF-PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL 87
           + E  W +  V G   P     + ++  YL+      I+D  CGSG  S   A  G    
Sbjct: 1   MPESYWEK--VSGKNIPSSLDLYPIIHNYLQE--DDEILDIGCGSGKISLELASKG--YS 54

Query: 88  VVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISRLPFASSSIDAVHAGAAI-HC 144
           V  +D +   ++      +    +            + S L F  SS D     A +   
Sbjct: 55  VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSV 114

Query: 145 --WSSPSTGVAEISRVLRPGGVFV 166
                 S  + E+ RVL+PG    
Sbjct: 115 PDPKERSRIIKEVFRVLKPGAYLY 138

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 70.6 bits (173), Expect = 1e-14
 Identities = 38/207 (18%), Positives = 70/207 (33%), Gaps = 29/207 (14%)

Query: 29  IYERGW-RQNFVWGGFPGPEKEFEL----------------MKGYLKPVLGGNIIDASCG 71
            Y   W  ++   G +  P  + E+                M G L+       +D   G
Sbjct: 35  FYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQR--QAKGLDLGAG 92

Query: 72  SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 131
            G  +R   +    S +  L+ +    K+  E+  Q      +N  +       +P   +
Sbjct: 93  YGGAARFLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDN 149

Query: 132 SIDAVHA-GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 190
           S D + +  A +H          E +RVL+P GV   T  + +   +      +L +  +
Sbjct: 150 SYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208

Query: 191 QISGSYTFLSEREIEDLCRACGLVDFK 217
                +   S      L + CGLV  +
Sbjct: 209 -----HDMGSLGLYRSLAKECGLVTLR 230

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 20/191 (10%)

Query: 29  IYERGWRQNFV-WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL 87
           +YE  + +N++  GG      +  L    L       ++D   G G       +      
Sbjct: 26  VYEFIFGENYISSGGLE--ATKKILSDIELNE--NSKVLDIGSGLGGGCMYINEKYGAH- 80

Query: 88  VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS 147
              +D   N++    E V       K  F     DI    F  ++ D +++  AI   S 
Sbjct: 81  THGIDICSNIVNMANERVSGN---NKIIF--EANDILTKEFPENNFDLIYSRDAILALSL 135

Query: 148 P--STGVAEISRVLRPGGVFVGTTY-IVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI 204
              +    +  + L+P G  + T Y   +       F   ++Q        YT ++  E 
Sbjct: 136 ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRK------YTLITVEEY 189

Query: 205 EDLCRACGLVD 215
            D+  AC   +
Sbjct: 190 ADILTACNFKN 200

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 70.1 bits (171), Expect = 3e-14
 Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 30/213 (14%)

Query: 24  PFMSFIYERGWRQNFVWG-GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK- 81
             ++ I +        +G G         L         G  ++D  CG+G    + +K 
Sbjct: 56  KILADIADEVL--EKFYGCGST-------LPADGSLE--GATVLDLGCGTGRDVYLASKL 104

Query: 82  SGLFSLVVALDYSENMLKQC-----YEFVQQESNFPKENFLLVRADISRL------PFAS 130
            G    V+ +D  +N L+       Y   +   +  + N   ++  I  L          
Sbjct: 105 VGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPD 164

Query: 131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 190
           SS+D V +    +  ++      EI RVLR GG            +     S   +Q+ +
Sbjct: 165 SSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELY-----FSDVYADRRLSEAAQQDPI 219

Query: 191 QISGS-YTFLSEREIEDLCRACGLVDFKCTRNR 222
                    L   +   L    G  D +     
Sbjct: 220 LYGECLGGALYLEDFRRLVAEAGFRDVRLVSVG 252

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 66.6 bits (162), Expect = 1e-13
 Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 25/155 (16%)

Query: 31  ERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVA 90
                  + W G         L++  L+P     I+   CG+   S      G F  V +
Sbjct: 16  GAADSAPYDWFG--DFSSFRALLEPELRP--EDRILVLGCGNSALSYELFLGG-FPNVTS 70

Query: 91  LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC------ 144
           +DYS  ++          ++ P+  +     D+ +L F S+S D V     +        
Sbjct: 71  VDYSSVVVAAMQA---CYAHVPQLRW--ETMDVRKLDFPSASFDVVLEKGTLDALLAGER 125

Query: 145 --WSSPSTGVAEISRVL-------RPGGVFVGTTY 170
             W+  S GV  + +VL        PGG F+  T 
Sbjct: 126 DPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 67.0 bits (163), Expect = 1e-13
 Identities = 25/194 (12%), Positives = 51/194 (26%), Gaps = 23/194 (11%)

Query: 37  NFVWGGF---PGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALD 92
           + V GG       + E        L        +D   G G  ++       ++    L+
Sbjct: 65  SGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLE 123

Query: 93  YSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--ST 150
             ++ML++    +          F  + A +       ++ D +         +      
Sbjct: 124 PVKHMLEEAKRELAGMPVG---KF--ILASMETATLPPNTYDLIVIQWTAIYLTDADFVK 178

Query: 151 GVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 210
                 + L P G          G           R  + +   S T  S+   + L   
Sbjct: 179 FFKHCQQALTPNGYIFFKENCSTGD----------RFLVDKEDSSLTR-SDIHYKRLFNE 227

Query: 211 CGLVDFKCTRNRGF 224
            G+   K      +
Sbjct: 228 SGVRVVKEAFQEEW 241

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 64.9 bits (158), Expect = 5e-13
 Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 11/141 (7%)

Query: 35  RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 94
           +  +V+G  P        +      +  G I+  + G G  +   A  G    V A+D S
Sbjct: 8   QSEYVYGTEPND-----FLVSVANQIPQGKILCLAEGEGRNACFLASLGYE--VTAVDQS 60

Query: 95  ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 154
              L +  +  Q++          V+++++     + + + + +       S       +
Sbjct: 61  SVGLAKAKQLAQEK----GVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPK 116

Query: 155 ISRVLRPGGVFVGTTYIVDGP 175
           + + L+PGGVF+   +  +  
Sbjct: 117 VYQGLKPGGVFILEGFAPEQL 137

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 64.7 bits (157), Expect = 8e-13
 Identities = 24/176 (13%), Positives = 45/176 (25%), Gaps = 18/176 (10%)

Query: 51  ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 110
             ++           +D   G G  ++      LF  V  +D +E+ L Q   ++ +E  
Sbjct: 69  RFLREGPNKTGTSCALDCGAGIGRITKRLL-LPLFREVDMVDITEDFLVQAKTYLGEEGK 127

Query: 111 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 168
                       +        S D +     I   +    +  +      LRP G+ V  
Sbjct: 128 ---RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIK 184

Query: 169 TYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGF 224
             +      L                S        +  +  + GL      R    
Sbjct: 185 DNMAQEGVILDDV------------DSSVCRDLDVVRRIICSAGLSLLAEERQENL 228

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 64.9 bits (158), Expect = 8e-13
 Identities = 22/167 (13%), Positives = 46/167 (27%), Gaps = 23/167 (13%)

Query: 57  LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 116
           +      N  D  CG G  + +       +++  +D  ++ML++           P  NF
Sbjct: 29  VPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA------ADRLPNTNF 82

Query: 117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 176
              +AD++    A    D ++A A           ++++   L  GGV            
Sbjct: 83  --GKADLATWKPA-QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP---DNL 136

Query: 177 NLIPFSRLLRQNMMQ----------ISGSYTFLSEREIEDLCRACGL 213
              P    + +                         +  +       
Sbjct: 137 QE-PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSS 182

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 63.0 bits (153), Expect = 5e-12
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 15/111 (13%)

Query: 59  PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL 118
                 ++D  CG G ++  FA +        LD S+  +K           +P      
Sbjct: 83  DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA------AKRYP--QVTF 134

Query: 119 VRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169
             A   RLPF+ +S+DA+          +P     E++RV++PGG  +  T
Sbjct: 135 CVASSHRLPFSDTSMDAI------IRIYAPCK-AEELARVVKPGGWVITAT 178

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 62.0 bits (150), Expect = 1e-11
 Identities = 34/203 (16%), Positives = 57/203 (28%), Gaps = 27/203 (13%)

Query: 51  ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQES 109
             ++ +L+P  G  +    CG          S    + +V +DY    L          +
Sbjct: 110 RALQRHLRP--GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA 167

Query: 110 NFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA---EISRVLRPGGVFV 166
                   L R D  +L       D + +          +          + L+PGG  V
Sbjct: 168 --LAGQITLHRQDAWKLDTREG-YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224

Query: 167 GTTYIVDGPFNLIPFSRLLRQNMMQ-------------ISGSYT-FLSEREIEDLCRACG 212
             T  +  P  L P S    Q +               I   +    +  +        G
Sbjct: 225 --TSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAG 282

Query: 213 LVDFKCTRNRG--FVMFTATKPS 233
             D +   +R   F    A KP+
Sbjct: 283 FTDLRFEDDRARLFPTVIARKPA 305

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 15/166 (9%)

Query: 26  MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 85
           M    E  +   +          E       +K V  G  +D  CG+G  S   A +G  
Sbjct: 3   MVIRDENYFTDKYELTRTHSEVLEA------VKVVKPGKTLDLGCGNGRNSLYLAANGYD 56

Query: 86  SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 145
             V A D +   +         E N    +      D++ L F     D + +   +   
Sbjct: 57  --VDAWDKNAMSIANVERIKSIE-NLDNLHT--RVVDLNNLTF-DRQYDFILSTVVLMFL 110

Query: 146 SSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNL-IPFSRLLRQN 188
            +      +A + R  +PGG  +    +    +   + F    ++ 
Sbjct: 111 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEG 156

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 59.3 bits (143), Expect = 9e-11
 Identities = 17/164 (10%), Positives = 43/164 (26%), Gaps = 19/164 (11%)

Query: 64  NIIDASCGSGLFSRIFAK------SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 117
            I+    G+G               G+      ++ S   + +  E V + SN     F 
Sbjct: 55  KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFA 114

Query: 118 LVRADISRL------PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171
             +   S               D +H    ++        +     +L      +     
Sbjct: 115 WHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174

Query: 172 VDGPFNLI--PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 213
               ++ +   +     Q+         +++  ++  +    GL
Sbjct: 175 GSSGWDKLWKKYGSRFPQD-----DLCQYITSDDLTQMLDNLGL 213

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 12/123 (9%)

Query: 47  EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 106
            +    +   ++P  G  I D  CG+G  + + A    +  V  +D SE ML+   E   
Sbjct: 21  PEWVAWVLEQVEP--GKRIADIGCGTGTATLLLADH--YE-VTGVDLSEEMLEIAQEKAM 75

Query: 107 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGG 163
           +       +      D+  L              +++   + +         +R+L  GG
Sbjct: 76  ET----NRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGG 131

Query: 164 VFV 166
             +
Sbjct: 132 KLL 134

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 47  EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 104
           +K  + +        ++  + +D +CG+G  +             A+D S+ ML +    
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN--TWAVDLSQEMLSEAENK 78

Query: 105 VQQESNFPKENFLLVRADISRLPFASSSIDAVH-AGAAIHCWSSPS---TGVAEISRVLR 160
            + +         L   DIS L   +   D +     + +              +S  L+
Sbjct: 79  FRSQ----GLKPRLACQDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLK 133

Query: 161 PGGVFV 166
            GGVF+
Sbjct: 134 EGGVFI 139

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 57.6 bits (139), Expect = 2e-10
 Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 15/131 (11%)

Query: 51  ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES 109
           + +K ++K   G  ++DA+CG+G  +   A   G    V   D  +  +    + +   +
Sbjct: 14  DYIKMFVKE--GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71

Query: 110 NFPKENFLLVRADI-SRLPFASSSIDAVHAGAAIHCW---------SSPSTGVAEISRVL 159
               +   L++    +   +    + AV                   +    +++   +L
Sbjct: 72  L--IDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL 129

Query: 160 RPGGVFVGTTY 170
             GG+     Y
Sbjct: 130 VTGGIITVVIY 140

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 31/171 (18%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR- 120
              ++D  C SG       ++G  + V  ++      +Q            KE    V  
Sbjct: 33  WKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQA-----------KEKLDHVVL 79

Query: 121 --ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 178
              +   +P+     D V  G  +     P   + ++   ++  GV + +      P N+
Sbjct: 80  GDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI-----P-NV 133

Query: 179 IPFSRLLR----QNMMQISGSYT-----FLSEREIEDLCRACGLVDFKCTR 220
              S L             G        F +  E+  +    G    K  R
Sbjct: 134 SHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR 184

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 18/114 (15%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
            G +++ + G G  +  F   G    V AL+ S ++L    + + +     ++   LV+ 
Sbjct: 83  SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG 140

Query: 122 DISRLPF---------ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
           D+S             +S SI+ +        +       A +   L PGG F+
Sbjct: 141 DMSAFALDKRFGTVVISSGSINELDEADRRGLY-------ASVREHLEPGGKFL 187

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 56.6 bits (136), Expect = 7e-10
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 21/150 (14%)

Query: 30  YERGWRQNFVWGGFP----GPEKEFELMKGYLKPVL--GGNIIDASCGSGLFSRIFAKSG 83
           +E+ W +  V           E+   +     + +      +ID +CG+G  ++  ++  
Sbjct: 19  WEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQ-- 76

Query: 84  LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA-----VHA 138
            F  V+ LD S++ L+               N      D      A+          ++ 
Sbjct: 77  FFPRVIGLDVSKSALEIA------AKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYM 130

Query: 139 GAAIHCWSSP--STGVAEISRVLRPGGVFV 166
               H             +  +L   G   
Sbjct: 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMY 160

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
              ++D +CG+G+ +   A+ G    VV LD  E ML+      ++           ++ 
Sbjct: 42  VRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKER----NLKIEFLQG 95

Query: 122 DISRLPFASSSIDAVHA-GAAIHCWSSPS--TGVAEISRVLRPGGVFV 166
           D+  + F  +  DAV    + I  +         ++++  L+PGGVF+
Sbjct: 96  DVLEIAF-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 56  YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPK 113
            LK V    +ID  CG G    +  K   F  +  +D S ++L++  + ++ +      +
Sbjct: 24  VLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQR 83

Query: 114 ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 168
           +   L ++ +       S  DA      I              +    RP  V V T
Sbjct: 84  KRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 17/130 (13%)

Query: 51  ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 110
           + +   L       ++DA+ G+G  +   A  GL   V A D  E  L +  + +     
Sbjct: 14  DFLAEVLDD--ESIVVDATMGNGNDTAFLA--GLSKKVYAFDVQEQALGKTSQRLSDLG- 68

Query: 111 FPKENFLLVRADISRLP-FASSSIDAVHA------GAAIHCWSSPSTGVAEIS---RVLR 160
              EN  L+      L  +    I A          A     + P T +  I      L 
Sbjct: 69  --IENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLE 126

Query: 161 PGGVFVGTTY 170
            GG      Y
Sbjct: 127 VGGRLAIMIY 136

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 19/158 (12%)

Query: 21  FRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFA 80
           +     + +++      ++        +    + G L+      ++D +CG+G+ S +  
Sbjct: 22  YADGEAARVWQL-----YIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 76

Query: 81  KSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPFASSSIDAVHA- 138
           + G    V ++D S+ MLK   +           + +++  A+   L     + D   A 
Sbjct: 77  EEGFS--VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134

Query: 139 ---GAAIHCWSSPSTG-------VAEISRVLRPGGVFV 166
              G +                 +  I+ ++RPGG+ V
Sbjct: 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 25/132 (18%)

Query: 36  QNFVWGGFPGPEKEFELMKGYLKPVLGG-NIIDASCGSGLFSRIFAKSGLFSLVVALDYS 94
           + F       P +  + +   L+       + D  CG    +       + + V   D  
Sbjct: 41  RGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASS-----IRNPVHCFD-- 93

Query: 95  ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 154
                               +  +   D++++P    S+D      ++   ++    + E
Sbjct: 94  ----------------LASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTNIRDFLEE 136

Query: 155 ISRVLRPGGVFV 166
            +RVL+PGG+  
Sbjct: 137 ANRVLKPGGLLK 148

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 17/131 (12%)

Query: 51  ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 110
           +L++         +++D +CG+G     F K         L+ SE+ML    +       
Sbjct: 32  DLVRSRTPE--ASSLLDVACGTGTHLEHFTKEFGD--TAGLELSEDMLTHARK------R 81

Query: 111 FPKENFLLVRADISRLPFASSSIDAVH-AGAAIHCWSSPS---TGVAEISRVLRPGGVFV 166
            P       + D+           AV    +++    +       VA  +  L PGGV V
Sbjct: 82  LPDATL--HQGDMRDFRLG-RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138

Query: 167 GTTYIVDGPFN 177
              +     F 
Sbjct: 139 VEPWWFPETFA 149

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 54.7 bits (131), Expect = 4e-09
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 8/133 (6%)

Query: 52  LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 111
           L++ Y K   G +++D  CG G     + ++G       +D +E  +       +     
Sbjct: 57  LIRLYTKR--GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRR 113

Query: 112 PKENFLLVRADISRLPFASSSIDAVHAGAAIHC----WSSPSTGVAEISRVLRPGGVFVG 167
            K  F   +    R        D + +  + H       S       I+R LRPGG F+ 
Sbjct: 114 FKVFFR-AQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172

Query: 168 TTYIVDGPFNLIP 180
           T    D       
Sbjct: 173 TVPSRDVILERYK 185

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 54.2 bits (130), Expect = 5e-09
 Identities = 26/185 (14%), Positives = 55/185 (29%), Gaps = 14/185 (7%)

Query: 14  MSPATEFFRMPFMS----FIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDAS 69
                 + R+  +S           ++   +            +    K +    ++D  
Sbjct: 69  FVEPQAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLG 128

Query: 70  CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129
           CG G  S   +  G    V + D++EN +    E  ++E      N      DI+     
Sbjct: 129 CGQGRNSLYLSLLGYD--VTSWDHNENSIAFLNETKEKE----NLNISTALYDINAANI- 181

Query: 130 SSSIDAVHAGAAIHCWSSPSTG--VAEISRVLRPGG-VFVGTTYIVDGPFNLIPFSRLLR 186
             + D + +       +       +  +      GG   +      D     +PFS    
Sbjct: 182 QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFA 241

Query: 187 QNMMQ 191
           +N ++
Sbjct: 242 ENELK 246

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 53.3 bits (128), Expect = 8e-09
 Identities = 21/161 (13%), Positives = 53/161 (32%), Gaps = 16/161 (9%)

Query: 12  ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 71
            ++S    +  +       +  WR +         E+  +L++  L      N ++  C 
Sbjct: 6   TMVSVDNTYQSLE-RELANDDPWRLDDNPFE---RERHTQLLRLSLSSGAVSNGLEIGCA 61

Query: 72  SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 131
           +G F+   A       +  +D     + +       +      +      DI +    + 
Sbjct: 62  AGAFTEKLAPHC--KRLTVIDVMPRAIGRA-----CQRTKRWSHISWAATDILQFS-TAE 113

Query: 132 SIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGG-VFVGT 168
             D +     ++     +   T +  + ++L PGG +  G+
Sbjct: 114 LFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 53.5 bits (128), Expect = 8e-09
 Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 8/113 (7%)

Query: 62  GGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSEN------MLKQCYEFVQQESNFPKE 114
           G  I++  CG G  S + A   G    V  +D +         L Q +  +       + 
Sbjct: 44  GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRL 103

Query: 115 NFLLVRADISRL-PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
                      L P A    D V    ++  ++S +        +        
Sbjct: 104 TVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVD 156

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 53.3 bits (128), Expect = 9e-09
 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 17/137 (12%)

Query: 47  EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 104
            +E   +   ++       +++D +CG+G+  R  A S     V  L+ S +ML      
Sbjct: 34  HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGT--VEGLELSADMLAIARR- 90

Query: 105 VQQESNFPKENFLLVRADISRLPFASSSIDAVH-AGAAIHCWSSPS---TGVAEISRVLR 160
                  P         D+           AV    ++I   +  +     +   +  + 
Sbjct: 91  -----RNPDAVL--HHGDMRDFSLG-RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVL 142

Query: 161 PGGVFVGTTYIVDGPFN 177
           P GV V   +     F 
Sbjct: 143 PDGVVVVEPWWFPENFT 159

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 4/117 (3%)

Query: 56  YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-- 113
            LK      +ID  CG G   +I  K   F  +  +D S   L+   E + +        
Sbjct: 24  ALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQW 83

Query: 114 ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 168
           E   L++  ++         DA      I              +    +P  V V T
Sbjct: 84  ERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 25/166 (15%), Positives = 45/166 (27%), Gaps = 29/166 (17%)

Query: 28  FIYERGWRQNFV-WGGFPGPEKEFEL--------MKGYLKPVLGGNIIDASCGSGLFSRI 78
                G  ++              E           G   P     ++DA CG G    +
Sbjct: 77  DRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGP--DDTLVDAGCGRGGSMVM 134

Query: 79  FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 138
             +      V  +  S           ++          +   ++   PF   ++ A   
Sbjct: 135 AHRRFGSR-VEGVTLSAAQADFGNRRARELRIDDHVRSRV--CNMLDTPFDKGAVTAS-- 189

Query: 139 GAAIHCWSSPSTGVA-------EISRVLRPGGVFVGTTYIVDGPFN 177
                 W++ ST          E SR L+ GG +V  T   +  + 
Sbjct: 190 ------WNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYG 229

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 27/177 (15%)

Query: 48  KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 107
                   Y K      ++D  CG G F  +  + G+    + +D +E+M+K C      
Sbjct: 30  ARLRRYIPYFKG--CRRVLDIGCGRGEFLELCKEEGIE--SIGVDINEDMIKFC------ 79

Query: 108 ESNFPKENFLLVRADISR--LPFASSSIDAVHAGAAI-HCWS-SPSTGVAEISRVLRPGG 163
                +  F +V++D            +D V     + H         ++     ++   
Sbjct: 80  -----EGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSS 134

Query: 164 VFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 220
             V  +     P N  P S     N          +    ++ +    G  D K   
Sbjct: 135 YIVIES-----P-N--PTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF 183

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 50  FELMKGYLKPVLGGN---IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-V 105
            +L K  L  ++G      ID   G G      A +   +  + +D  +  L    +  +
Sbjct: 10  VDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII 69

Query: 106 QQESNFPKENFLLVRADISRLPFA-SSSIDAVHA----GAAIHCWSSPSTGV-AEISRVL 159
           ++ S     N + V A    LPF   +  D++      G  +     P+  + + ++ + 
Sbjct: 70  KKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLA 129

Query: 160 RPGGVFVGTT 169
           +    F   T
Sbjct: 130 KKEAHFEFVT 139

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 6/119 (5%)

Query: 56  YLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 114
           +++      ++D  CGSG               ++ +D S   L +  + +  + N    
Sbjct: 716 HIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEAC 775

Query: 115 NFL---LVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 168
           N     L    I         +D       I             ++  +  P  + V T
Sbjct: 776 NVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVST 834

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 12/153 (7%)

Query: 34  WRQNFV-W-GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL 91
           W +    W  G   P     +    L     G  +   CG G      A    F  VV L
Sbjct: 40  WEEEITPWDQGRATPLIVHLVDTSSLPL---GRALVPGCGGGHDVVAMASPERF--VVGL 94

Query: 92  DYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--S 149
           D SE+ L +  E     S+   E F  V+ D+      +   D +               
Sbjct: 95  DISESALAKANE--TYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRP 151

Query: 150 TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 182
                +  +L+P G  +   Y +       P+ 
Sbjct: 152 AWAKSMYELLKPDGELITLMYPITDHVGGPPYK 184

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 15/131 (11%)

Query: 54  KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK 113
           K +L       ++    G+G     +      +L+VA D   + + +  E   + ++  K
Sbjct: 41  KTFLDDSNKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIK 99

Query: 114 ENFLLVRADIS-----------RLPFASSSIDAVHAGAAIH-CWSSP--STGVAEISRVL 159
             +                   R  F     + +    AIH  +     +T +  +S + 
Sbjct: 100 TKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELT 159

Query: 160 RPGGVFVGTTY 170
             GG  + TT 
Sbjct: 160 ASGGKVLITTM 170

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 21/226 (9%), Positives = 57/226 (25%), Gaps = 37/226 (16%)

Query: 7   SKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNII 66
           S++Y + +            +F ++                    +++ +      GN++
Sbjct: 5   SRNYDQEIKDTAGH--KYAYNFDFDVMHP---------------FMVRAFTPFFRPGNLL 47

Query: 67  DASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126
           +     G F+    +    + +  ++ SE  +              K+    + +     
Sbjct: 48  ELGSFKGDFTSRLQEHF--NDITCVEASEEAISHA-------QGRLKDGITYIHSRFEDA 98

Query: 127 PFASSSIDAVHAGAAIHCWSSPSTGVAEI-SRVLRPGGVFVGTTYIVDGPFNLIPFSRLL 185
                  D +     +     P   +  I    L  GG         +     I     +
Sbjct: 99  QL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGI 157

Query: 186 RQNMMQISGSYT------FLSEREIEDLCRACGLVDFKCTRNRGFV 225
             +   ++ +          +   +E      G    + T   G  
Sbjct: 158 ISHNSAVTEAEFAHGHRCTYALDTLERDASRAG---LQVTYRSGIF 200

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 11/118 (9%), Positives = 31/118 (26%), Gaps = 10/118 (8%)

Query: 49  EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 108
           + E   G  +   G   +    G    + I         V  ++   ++ +   + ++  
Sbjct: 112 KNEAALGRFRR--GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL 169

Query: 109 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
                +   ++  D + +       D +   A              I R +      +
Sbjct: 170 ---GVDGVNVITGDETVIDGLE--FDVLMVAALA---EPKRRVFRNIHRYVDTETRII 219

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 41.2 bits (96), Expect = 9e-05
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 16/135 (11%)

Query: 47  EKEFELMKGYLKPVLGGN---IIDASCGSGLFSRIFAKSGLFSLVVALD-YSENMLKQCY 102
           ++  E      + +       ++D   G G      A+     LVVALD     M K   
Sbjct: 10  KRVQEFSDAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISA 69

Query: 103 EFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWS--------SPSTGVAE 154
           +   + +     N L + A   RLP   S +  +H    +  W         S    +  
Sbjct: 70  KAAAKPAKGGLPNLLYLWATAERLP-PLSGVGELHV---LMPWGSLLRGVLGSSPEMLRG 125

Query: 155 ISRVLRPGGVFVGTT 169
           ++ V RPG  F+   
Sbjct: 126 MAAVCRPGASFLVAL 140

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 33/231 (14%), Positives = 58/231 (25%), Gaps = 47/231 (20%)

Query: 16  PATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSG 73
           P            +    W  +     F     +        +L   L G I+D  CG+G
Sbjct: 175 PQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNG 234

Query: 74  LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 133
           +           + VV +D S   +      V+       +    +  +           
Sbjct: 235 VIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRF 293

Query: 134 DAV------HAGAAIHCWSSPSTG---VAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 184
           +AV      H   A+      +          R L+  G      YIV            
Sbjct: 294 NAVLCNPPFHQQHALT----DNVAWEMFHHARRCLKINGEL----YIV------------ 333

Query: 185 LRQNMMQISGSYTFLS-EREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQ 234
                     +   L    +++ +   C  +      N  FV+  A K   
Sbjct: 334 ----------ANRHLDYFHKLKKIFGNCTTI----ATNNKFVVLKAVKLEH 370

>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 26/199 (13%), Positives = 61/199 (30%), Gaps = 22/199 (11%)

Query: 51  ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLV--VALDYSENMLKQCYEFVQQE 108
            L + ++      N+ D  C  G  +    ++     V  + +D S+ M+++C + +   
Sbjct: 50  MLAERFVTA--DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY 107

Query: 109 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 168
            +  +    ++  DI  +   ++S+  ++              + +I   L P GV V +
Sbjct: 108 HS--EIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 165

Query: 169 TYIVDGPFNLIP--------------FSRLLRQNMMQ-ISGSYTFLSEREIEDLCRACGL 213
                    +                +S L        +       S    +   +  G 
Sbjct: 166 EKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGF 225

Query: 214 VDFKC-TRNRGFVMFTATK 231
              +   +   F    A K
Sbjct: 226 SQVELWFQCFNFGSMIAVK 244

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 39/254 (15%), Positives = 74/254 (29%), Gaps = 82/254 (32%)

Query: 8   KDYGELMSPATEFFRMPFM---SFIYERG--WRQN--FVWGGFPGPEKEFEL-------- 52
            +Y  LMSP     R P M    +I +R   +  N  F        +   +L        
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 53  ---------MKGYLKPVLGGNII-DASCGSGLFSRIF-AKSG-----------LFSLVVA 90
                    + G  K  +  ++         +  +IF                L  L+  
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 91  L--------DYSENMLKQCYEFVQQE-SNF----PKENFLLVRADISRLPFASSSIDAVH 137
           +        D+S N +K     +Q E        P EN LLV  ++      + + +A  
Sbjct: 209 IDPNWTSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN----AKAWNAF- 262

Query: 138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 197
               + C            ++L      + T +      + +  +     ++   S + T
Sbjct: 263 ---NLSC------------KIL------LTTRFK--QVTDFLSAATTTHISLDHHSMTLT 299

Query: 198 FLSEREIEDLCRAC 211
                E++ L    
Sbjct: 300 ---PDEVKSLLLKY 310

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 57  LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 115
           +KP  G  I+D   GSG     +A+  G+      +D S     Q     ++     + +
Sbjct: 34  MKP--GTRILDLGSGSGEMLCTWARDHGI--TGTGIDMSSLFTAQAKRRAEELGVSERVH 89

Query: 116 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP 175
           F+    D +    A+   D      A       +     +++ L+PGG+ +    I +  
Sbjct: 90  FIH--NDAAGYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML----IGEPY 142

Query: 176 FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 214
           +  +P +  + Q     S S  FL+   +       G  
Sbjct: 143 WRQLPATEEIAQACGVSSTSD-FLTLPGLVGAFDDLGYD 180

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.95
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.94
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.94
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.93
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.93
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.93
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.93
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.93
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.92
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.92
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.92
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.92
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.92
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.92
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.91
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.91
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.91
3ocj_A	305	Putative exported protein; structural genomics, PS	99.91
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.91
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.91
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.91
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.9
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.9
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.9
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.9
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.9
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.9
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.9
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.9
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.9
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.9
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.9
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.9
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.89
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.89
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.89
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.89
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.89
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.89
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.89
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.89
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.89
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.89
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.89
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.89
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.89
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.89
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.89
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.89
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.88
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.88
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.88
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.88
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.88
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.88
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.88
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.88
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.88
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.88
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.88
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.87
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.87
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.87
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.87
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.87
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.87
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.87
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.87
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.87
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.87
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.87
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.86
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.86
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.86
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.86
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.86
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.85
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.85
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.85
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.85
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.85
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.85
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.84
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.84
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.84
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.84
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.84
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.83
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.83
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.83
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.83
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.83
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.82
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.82
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.82
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.82
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.81
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.81
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.81
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.81
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.8
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.8
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.8
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.8
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.8
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.8
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.8
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.8
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.8
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.8
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.79
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.79
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.79
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.79
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.79
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.79
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.79
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.79
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.79
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.78
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.78
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.77
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.77
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.77
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.77
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.77
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.76
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.76
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.76
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.76
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.76
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.76
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.76
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.75
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.75
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.75
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.74
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.74
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.74
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.74
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.74
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.74
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.73
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.73
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.73
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.73
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.73
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.72
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.72
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.72
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.71
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.71
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.71
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.71
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.71
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.71
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.71
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.71
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.7
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.7
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.7
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.7
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.7
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.69
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.69
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.69
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.69
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.69
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.68
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.68
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.68
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.68
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.68
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.67
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.67
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.67
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.67
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.67
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.67
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.66
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.66
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.66
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.66
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.66
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.66
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.66
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.66
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.65
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.65
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.65
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.65
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.64
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.64
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.64
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.64
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.63
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.63
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.63
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.62
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.62
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.61
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.61
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.61
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.61
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.61
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.61
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.61
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.6
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.6
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.6
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.6
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.6
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.6
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.6
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.59
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.58
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.58
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.57
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.57
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.57
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.56
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.56
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.56
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.56
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.56
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.55
2o07_A	304	Spermidine synthase; structural genomics, structur	99.55
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.54
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.54
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.54
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.54
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.53
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.51
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.5
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.5
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.48
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.48
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.48
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.47
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.47
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.47
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.47
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.47
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.46
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.44
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.43
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.43
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.41
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.41
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.4
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.39
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.38
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.37
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.37
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.36
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.34
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.31
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.29
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.27
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.27
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.27
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.27
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.27
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.26
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.25
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.18
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.18
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.16
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.15
3khk_A	544	Type I restriction-modification system methylation	99.14
3lkd_A	542	Type I restriction-modification system methyltrans	99.1
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.1
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.08
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	99.07
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.06
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.05
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.03
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.01
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.94
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.94
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.94
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.91
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.9
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.87
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.83
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.8
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.76
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.75
3ufb_A	530	Type I restriction-modification system methyltran	98.72
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.62
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.6
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.57
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.44
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.39
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	98.31
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.31
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	98.29
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.29
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.26
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.16
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	98.15
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	98.06
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.98
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.89
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.61
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.48
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.43
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.43
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.42
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	97.38
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.23
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.02
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.97
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.94
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.78
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.7
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.7
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.64
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.62
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.61
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.51
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.4
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.39
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.37
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.32
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.32
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.27
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.24
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.23
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.18
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.17
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.03
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.02
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.02
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.01
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.98
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.96
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.92
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.9
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.89
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.88
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.8
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.76
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.76
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.75
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.7
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.66
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.66
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.65
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.59
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.57
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.54
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	95.53
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.52
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.46
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.41
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.41
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.36
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	95.3
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.16
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.01
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.99
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.98
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.97
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.96
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.74
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.73
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.72
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.69
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.69
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.66
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.63
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.62
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.55
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.54
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.52
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.49
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.47
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.41
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.3
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	94.15
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	94.13
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.11
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.99
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.93
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	93.78
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.77
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	93.76
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	93.7
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	93.57
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.29
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	93.23
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	93.1
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	93.07
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.06
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	93.03
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.95
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	92.94
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.83
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.82
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	92.72
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	92.4
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	92.36
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	92.31
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	92.26
3c85_A	183	Putative glutathione-regulated potassium-efflux S	92.12
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.05
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.03
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	92.03
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	92.01
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.87
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	91.62
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	91.53
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.5
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	91.46
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	91.42
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	91.41
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	91.37
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	91.22
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	91.16
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.07
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.05
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	91.01
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	90.95
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	90.94
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.92
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	90.92
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	90.84
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	90.74
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	90.72
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.65
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	90.64
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	90.61
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	90.4
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	90.08
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.04
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	89.97
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	89.96
1xhl_A	297	Short-chain dehydrogenase/reductase family member	89.95
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	89.85
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	89.82
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	89.78
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	89.78
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	89.7
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.46
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	89.46
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	89.39
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	89.14
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	89.11
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	89.01
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	88.77
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	88.56
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	88.4
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	88.19
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	87.93
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	87.79
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	87.76
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	87.72
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	87.66
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	87.64
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	87.6
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	87.39
1id1_A	153	Putative potassium channel protein; RCK domain, E.	87.36
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	87.33
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	87.26
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	87.24
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	87.21
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	87.16
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	87.09
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	86.98
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	86.94
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	86.84
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	86.82
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	86.78
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	86.73
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	86.47
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	86.44
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	86.42
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	86.34
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	86.02
3imf_A	257	Short chain dehydrogenase; structural genomics, in	86.01
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	85.93
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	85.89
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	85.58
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	85.58
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	85.57
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	85.46
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	85.19
3lvj_C	82	Sulfurtransferase TUSA; protein-protein complex, s	85.18
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	85.1
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	84.92
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	84.87
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	84.82
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	84.82
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	84.51
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	84.01
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	83.95
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	83.9

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.95  E-value=2.6e-26  Score=177.01  Aligned_cols=188  Identities=13%  Similarity=0.146  Sum_probs=139.5

Q ss_pred             CCCCHHHHHHHHhhcC--CCCCCeEEEecCCCchHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeE
Q 026688           43 FPGPEKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL  118 (235)
Q Consensus        43 ~~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~  118 (235)
                      .|...+..+.+..++.  ..++.+|||+|||+|..+..++++.  ++++|+|+|+|+.|++.|++++...+.  ..++++
T Consensus        50 vP~Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~--~~~v~~  127 (261)
T 4gek_A           50 VPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA--PTPVDV  127 (261)
T ss_dssp             STTHHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC--SSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc--CceEEE
Confidence            4555555554443332  3458899999999999999999874  456999999999999999999887654  458999


Q ss_pred             EecccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh---c-
Q 026688          119 VRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---I-  192 (235)
Q Consensus       119 ~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~---~-  192 (235)
                      .++|+.++++  +.||+|++..+++|++++  ..++++++++|+|||.+++.+...............++..+..   . 
T Consensus       128 ~~~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s  205 (261)
T 4gek_A          128 IEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYS  205 (261)
T ss_dssp             EESCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGG
T ss_pred             eecccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            9999998875  569999999999999765  4789999999999999999987664322111111111111110   0 


Q ss_pred             -----------CCceeecCHHHHHHHHHHcCCceeEEE-eeCcEEEEEEecCCC
Q 026688          193 -----------SGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPSQ  234 (235)
Q Consensus       193 -----------~~~~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~~~~~~~k~~~  234 (235)
                                 ......++.+++.++|+++||+.+++. ..-.+..++|.|+..
T Consensus       206 ~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~~~  259 (261)
T 4gek_A          206 ELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKAED  259 (261)
T ss_dssp             GSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECCTT
T ss_pred             HHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEcCC
Confidence                       111345788999999999999988875 455678899999864

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.94  E-value=1.8e-25  Score=168.18  Aligned_cols=179  Identities=17%  Similarity=0.229  Sum_probs=140.9

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ....+.+.+.+...++ +|||+|||+|.++..+++. +..+++++|+++.+++.+++++...+.  ..++++.+.|+.++
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~  105 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANL--NDRIQIVQGDVHNI  105 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECBTTBC
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccc--cCceEEEEcCHHHC
Confidence            4556777777776555 9999999999999999998 567999999999999999999887654  45799999999998


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh--------hcCCceee
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--------QISGSYTF  198 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  198 (235)
                      +++.++||+|++..+++|++++..+++++.++|+|||.+++.+.....     .....+...+.        ....+...
T Consensus       106 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (219)
T 3dlc_A          106 PIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNK-----ELRDSISAEMIRKNPDWKEFNRKNISQ  180 (219)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH-----HHHHHHHHHHHHHCTTHHHHHHHHSSH
T ss_pred             CCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcH-----HHHHHHHHHHHHhHHHHHhhhhhcccc
Confidence            888889999999999999999999999999999999999998755421     11111111110        01123445


Q ss_pred             cCHHHHHHHHHHcCCceeEEEeeCcEEEEEEecCCC
Q 026688          199 LSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQ  234 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~k~~~  234 (235)
                      ++.+++.++|+++||+++++.......+++.+|+.+
T Consensus       181 ~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~k~~~  216 (219)
T 3dlc_A          181 ENVERFQNVLDEIGISSYEIILGDEGFWIIISKTDQ  216 (219)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEEEETTEEEEEEBCCSC
T ss_pred             CCHHHHHHHHHHcCCCeEEEEecCCceEEEEecccc
Confidence            688999999999999999988776666666666543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.94  E-value=6.6e-25  Score=165.32  Aligned_cols=166  Identities=17%  Similarity=0.177  Sum_probs=138.8

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      +.+++.+...++.+|||+|||+|.++..+++.+ +..+++++|+++.+++.+++++...+   ..++.+...|+.+.+++
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~  103 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG---LKNVEVLKSEENKIPLP  103 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECBTTBCSSC
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEecccccCCCC
Confidence            455666666678899999999999999999985 66799999999999999999987765   34799999999988887


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  209 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  209 (235)
                      .++||+|++..+++|++++..+++++.++|+|||.+++.++.......              .......++.+++.++++
T Consensus       104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~  169 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK--------------GPPPEEVYSEWEVGLILE  169 (219)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS--------------SCCGGGSCCHHHHHHHHH
T ss_pred             CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccccc--------------CCchhcccCHHHHHHHHH
Confidence            889999999999999999999999999999999999999887643211              112344679999999999


Q ss_pred             HcCCceeEEEeeC-cEEEEEEecCC
Q 026688          210 ACGLVDFKCTRNR-GFVMFTATKPS  233 (235)
Q Consensus       210 ~~Gf~~~~~~~~~-~~~~~~~~k~~  233 (235)
                      ++||+++.....+ ....++++|+.
T Consensus       170 ~~Gf~~~~~~~~~~~~~~~~~~k~~  194 (219)
T 3dh0_A          170 DAGIRVGRVVEVGKYCFGVYAMIVK  194 (219)
T ss_dssp             HTTCEEEEEEEETTTEEEEEEECC-
T ss_pred             HCCCEEEEEEeeCCceEEEEEEecc
Confidence            9999998886544 66777888764

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.93  E-value=1.2e-24  Score=165.59  Aligned_cols=183  Identities=15%  Similarity=0.216  Sum_probs=139.8

Q ss_pred             CHHHHHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .....+.+...+. ..++.+|||+|||+|.++..+++..+..+++++|+|+.+++.+++++...     .++.+.++|+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~  102 (234)
T 3dtn_A           28 FDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYS  102 (234)
T ss_dssp             HHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-----TTEEEEESCTT
T ss_pred             HHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-----CCEEEEeCchh
Confidence            3445566666665 45678999999999999999999987789999999999999999987653     37999999999


Q ss_pred             cCCCCCCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH-------------
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM-------------  189 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~-------------  189 (235)
                      +.+++ ++||+|++..+++|++++.  .+++++.++|+|||.+++.++...............+...             
T Consensus       103 ~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (234)
T 3dtn_A          103 KYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAA  181 (234)
T ss_dssp             TCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHT
T ss_pred             ccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHH
Confidence            98866 8999999999999998775  5999999999999999999987653221111111111111             


Q ss_pred             -hhcCCceeecCHHHHHHHHHHcCCceeEEE-eeCcEEEEEEecCCC
Q 026688          190 -MQISGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPSQ  234 (235)
Q Consensus       190 -~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~~~~~~~k~~~  234 (235)
                       .....+...++.+++.++|+++||+++++. ....+.++.+.|+.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~  228 (234)
T 3dtn_A          182 GYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKTEG  228 (234)
T ss_dssp             TC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC--
T ss_pred             HHHhcccccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEeccc
Confidence             011134566789999999999999998886 445778888887753

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.93  E-value=2.2e-24  Score=167.75  Aligned_cols=169  Identities=22%  Similarity=0.252  Sum_probs=135.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++...+.  ..++.+..+|+.+++
T Consensus        48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~  124 (273)
T 3bus_A           48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGL--ANRVTFSYADAMDLP  124 (273)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECccccCC
Confidence            445667777777778999999999999999998865 46999999999999999999877654  347999999999988


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  207 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (235)
                      ++.++||+|++..+++|++++..+++++.++|+|||.+++.++......  ..........+.....+...++.+++.++
T Consensus       125 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (273)
T 3bus_A          125 FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPV--EGAKKEAVDAFRAGGGVLSLGGIDEYESD  202 (273)
T ss_dssp             SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCC--CHHHHHHHHHHHHHHTCCCCCCHHHHHHH
T ss_pred             CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCC--ChhHHHHHHHHHhhcCccCCCCHHHHHHH
Confidence            8788999999999999999999999999999999999999988754321  11111111111112234567899999999


Q ss_pred             HHHcCCceeEEEee
Q 026688          208 CRACGLVDFKCTRN  221 (235)
Q Consensus       208 l~~~Gf~~~~~~~~  221 (235)
                      ++++||+++.....
T Consensus       203 l~~aGf~~~~~~~~  216 (273)
T 3bus_A          203 VRQAELVVTSTVDI  216 (273)
T ss_dssp             HHHTTCEEEEEEEC
T ss_pred             HHHcCCeEEEEEEC
Confidence            99999998877643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.93  E-value=6.3e-25  Score=169.70  Aligned_cols=166  Identities=17%  Similarity=0.223  Sum_probs=133.9

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ...++.+.+.+...++.+|||+|||+|.++..+++.++  +|+++|+|+.+++.+++++...+   ..++.+.++|+.++
T Consensus        23 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~l   97 (260)
T 1vl5_A           23 GSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQM   97 (260)
T ss_dssp             CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CC
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEecHHhC
Confidence            34456777777777789999999999999999999876  99999999999999999887654   34799999999998


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh--hcCCceeecCHHHH
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREI  204 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  204 (235)
                      ++++++||+|++..+++|++++..+++++.++|+|||.+++.++.....    +....+.....  ....+...++.+++
T Consensus        98 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (260)
T 1vl5_A           98 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN----DAFDVFYNYVEKERDYSHHRAWKKSDW  173 (260)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS----HHHHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred             CCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCC----HHHHHHHHHHHHhcCccccCCCCHHHH
Confidence            8888899999999999999999999999999999999999987765322    22222222111  12334567899999


Q ss_pred             HHHHHHcCCceeEEEee
Q 026688          205 EDLCRACGLVDFKCTRN  221 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~~~  221 (235)
                      .++|+++||+++.....
T Consensus       174 ~~~l~~aGf~~~~~~~~  190 (260)
T 1vl5_A          174 LKMLEEAGFELEELHCF  190 (260)
T ss_dssp             HHHHHHHTCEEEEEEEE
T ss_pred             HHHHHHCCCeEEEEEEe
Confidence            99999999998776644

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.93  E-value=4.1e-25  Score=166.56  Aligned_cols=173  Identities=17%  Similarity=0.146  Sum_probs=133.5

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      +.+++.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.+++++.       .++++.++|+.+.+++ 
T Consensus        35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~-  104 (220)
T 3hnr_A           35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP-  104 (220)
T ss_dssp             HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-
T ss_pred             HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-
Confidence            3444444444678999999999999999999854  99999999999999998753       3688999999998876 


Q ss_pred             CceeEEEecccccccCChHH--HHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH----hhcCCceeecCHHHH
Q 026688          131 SSIDAVHAGAAIHCWSSPST--GVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM----MQISGSYTFLSEREI  204 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~--~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  204 (235)
                      ++||+|++..+++|++++..  +++++.++|+|||.+++.++..............+....    ........+++.+++
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (220)
T 3hnr_A          105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVM  184 (220)
T ss_dssp             SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHH
T ss_pred             CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHH
Confidence            89999999999999998876  999999999999999999876543211111111110000    001112345689999


Q ss_pred             HHHHHHcCCceeEEEeeCcEEEEEEecCC
Q 026688          205 EDLCRACGLVDFKCTRNRGFVMFTATKPS  233 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~~~~~~~~~~~~k~~  233 (235)
                      .++++++||+++.....+..+++.++|+.
T Consensus       185 ~~~l~~aGf~v~~~~~~~~~w~~~~~~~~  213 (220)
T 3hnr_A          185 QTIFENNGFHVTFTRLNHFVWVMEATKQL  213 (220)
T ss_dssp             HHHHHHTTEEEEEEECSSSEEEEEEEECS
T ss_pred             HHHHHHCCCEEEEeeccceEEEEeehhhh
Confidence            99999999999888888888888888875

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.93  E-value=1.6e-24  Score=170.53  Aligned_cols=166  Identities=17%  Similarity=0.154  Sum_probs=132.6

Q ss_pred             HHHHHHHHhhc----CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           47 EKEFELMKGYL----KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        47 ~~~~~~i~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      ....+.+.+.+    ...++.+|||+|||+|..+..+++.. ..+|+|+|+|+.+++.++++....+.  ..++++.++|
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d  140 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGS  140 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECC
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEEcC
Confidence            34456677777    66678999999999999999999873 24999999999999999998877654  4579999999


Q ss_pred             cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHH
Q 026688          123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER  202 (235)
Q Consensus       123 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (235)
                      +.++|++.++||+|++..+++|++++..+++++.++|+|||.+++.++......... ....+....    ......+..
T Consensus       141 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~  215 (297)
T 2o57_A          141 FLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKS-SIQPILDRI----KLHDMGSLG  215 (297)
T ss_dssp             TTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG-GGHHHHHHH----TCSSCCCHH
T ss_pred             cccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchH-HHHHHHHHh----cCCCCCCHH
Confidence            999888888999999999999999999999999999999999999998765322211 122222111    112356899


Q ss_pred             HHHHHHHHcCCceeEEEe
Q 026688          203 EIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       203 ~~~~~l~~~Gf~~~~~~~  220 (235)
                      ++.++++++||+++.+..
T Consensus       216 ~~~~~l~~aGf~~~~~~~  233 (297)
T 2o57_A          216 LYRSLAKECGLVTLRTFS  233 (297)
T ss_dssp             HHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHCCCeEEEEEE
Confidence            999999999999887764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.92  E-value=6.6e-24  Score=162.02  Aligned_cols=166  Identities=19%  Similarity=0.229  Sum_probs=135.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ......+.+.+...++.+|||+|||+|.++..+++.++  +++++|+++.+++.+++++...+   ..++.+...|+.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~   81 (239)
T 1xxl_A            7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESL   81 (239)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBC
T ss_pred             CCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCCeEEEecccccC
Confidence            44556677777878899999999999999999999876  99999999999999999887665   34799999999988


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh--hcCCceeecCHHHH
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREI  204 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  204 (235)
                      +++.++||+|++..+++|++++..+++++.++|+|||.+++.+......    +....+...+.  ....+...++.+++
T Consensus        82 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (239)
T 1xxl_A           82 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED----PVLDEFVNHLNRLRDPSHVRESSLSEW  157 (239)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS----HHHHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred             CCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC----hhHHHHHHHHHHhccccccCCCCHHHH
Confidence            8878899999999999999999999999999999999999988765322    22222222111  12345667899999


Q ss_pred             HHHHHHcCCceeEEEee
Q 026688          205 EDLCRACGLVDFKCTRN  221 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~~~  221 (235)
                      .++|+++||+++.+...
T Consensus       158 ~~ll~~aGf~~~~~~~~  174 (239)
T 1xxl_A          158 QAMFSANQLAYQDIQKW  174 (239)
T ss_dssp             HHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHCCCcEEEEEee
Confidence            99999999998776643

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.92  E-value=4.2e-24  Score=164.64  Aligned_cols=168  Identities=15%  Similarity=0.124  Sum_probs=135.8

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      +......+.+.+.+...++.+|||+|||+|..+..+++.. ..+++|+|+|+.+++.+++++...+.  ..++.+.++|+
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~v~~~~~d~   95 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDA   95 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCC
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECCh
Confidence            4466778888888887788999999999999999999875 45999999999999999999877654  34799999999


Q ss_pred             ccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHH
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  203 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (235)
                      .+.++ .++||+|++..+++|++++.++++++.++|+|||.+++.++........    ..+...+. ...+..+++..+
T Consensus        96 ~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~  169 (256)
T 1nkv_A           96 AGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPAT----EEIAQACG-VSSTSDFLTLPG  169 (256)
T ss_dssp             TTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSS----HHHHHTTT-CSCGGGSCCHHH
T ss_pred             HhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCCh----HHHHHHHh-cccccccCCHHH
Confidence            98876 6889999999999999999999999999999999999988764322111    11111111 223346789999


Q ss_pred             HHHHHHHcCCceeEEEe
Q 026688          204 IEDLCRACGLVDFKCTR  220 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~~  220 (235)
                      +.++++++||+++....
T Consensus       170 ~~~~l~~aGf~~~~~~~  186 (256)
T 1nkv_A          170 LVGAFDDLGYDVVEMVL  186 (256)
T ss_dssp             HHHHHHTTTBCCCEEEE
T ss_pred             HHHHHHHCCCeeEEEEe
Confidence            99999999999877643

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.92  E-value=1.1e-23  Score=163.39  Aligned_cols=169  Identities=14%  Similarity=0.149  Sum_probs=135.6

Q ss_pred             CCCHHHHHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           44 PGPEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      +........++..+. ..++.+|||+|||+|.++..+++. +.++|+|+|+|+.+++.+++++...+.  ..++++.+.|
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d  104 (267)
T 3kkz_A           28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGL--QNRVTGIVGS  104 (267)
T ss_dssp             SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECC
T ss_pred             CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCC--CcCcEEEEcC
Confidence            445667777777776 556899999999999999999988 567999999999999999999887654  3579999999


Q ss_pred             cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHH
Q 026688          123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER  202 (235)
Q Consensus       123 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (235)
                      +.+++++.++||+|++..+++|+ ++..+++++.++|+|||.+++.++..............+..   .   ...+.+..
T Consensus       105 ~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~  177 (267)
T 3kkz_A          105 MDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMD---A---YPEIDTIP  177 (267)
T ss_dssp             TTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHH---H---CTTCEEHH
T ss_pred             hhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHH---h---CCCCCCHH
Confidence            99888778899999999999999 88999999999999999999998864332222222211111   1   12456889


Q ss_pred             HHHHHHHHcCCceeEEEeeC
Q 026688          203 EIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       203 ~~~~~l~~~Gf~~~~~~~~~  222 (235)
                      ++.++++++||+++.+...+
T Consensus       178 ~~~~~l~~aGf~~v~~~~~~  197 (267)
T 3kkz_A          178 NQVAKIHKAGYLPVATFILP  197 (267)
T ss_dssp             HHHHHHHHTTEEEEEEEECC
T ss_pred             HHHHHHHHCCCEEEEEEECC
Confidence            99999999999998876543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.92  E-value=1.3e-23  Score=162.08  Aligned_cols=169  Identities=14%  Similarity=0.148  Sum_probs=134.8

Q ss_pred             CCCHHHHHHHHhhc-CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           44 PGPEKEFELMKGYL-KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        44 ~~~~~~~~~i~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      +........++..+ ...++.+|||+|||+|..+..+++.++ .+|+|+|+|+.+++.+++++...+.  ..++++.++|
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d  104 (257)
T 3f4k_A           28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANC--ADRVKGITGS  104 (257)
T ss_dssp             SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECC
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECC
Confidence            44667777777777 445678999999999999999999976 4999999999999999999887664  3469999999


Q ss_pred             cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHH
Q 026688          123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER  202 (235)
Q Consensus       123 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (235)
                      +.+++++.++||+|++..+++|+ ++..+++++.++|+|||.+++.++..............+...   .   ....+.+
T Consensus       105 ~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~  177 (257)
T 3f4k_A          105 MDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDA---Y---PEISVIP  177 (257)
T ss_dssp             TTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHH---C---TTCCBHH
T ss_pred             hhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHh---C---CCCCCHH
Confidence            99888878899999999999999 788999999999999999999987643322222222221111   1   2256899


Q ss_pred             HHHHHHHHcCCceeEEEeeC
Q 026688          203 EIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       203 ~~~~~l~~~Gf~~~~~~~~~  222 (235)
                      ++.++++++||+++.....+
T Consensus       178 ~~~~~l~~aGf~~v~~~~~~  197 (257)
T 3f4k_A          178 TCIDKMERAGYTPTAHFILP  197 (257)
T ss_dssp             HHHHHHHHTTEEEEEEEECC
T ss_pred             HHHHHHHHCCCeEEEEEECC
Confidence            99999999999998876443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.92  E-value=3e-23  Score=167.06  Aligned_cols=179  Identities=12%  Similarity=0.117  Sum_probs=139.5

Q ss_pred             HHHhhcCCCC-CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-CC
Q 026688           52 LMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA  129 (235)
Q Consensus        52 ~i~~~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~  129 (235)
                      .+++.+...+ +.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++++...+.  ..++++..+|+.+.+ +.
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~  245 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL--GGRVEFFEKNLLDARNFE  245 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC--GGGEEEEECCTTCGGGGT
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC--CCceEEEeCCcccCcccC
Confidence            4444555444 78999999999999999999998889999999 8899999998877553  357999999998765 13


Q ss_pred             CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh-hcCCceeecCHHHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM-QISGSYTFLSEREIED  206 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  206 (235)
                      .+.||+|++..++||+++.  ..+++++.++|+|||.+++.+...+... ..+....+..... ........++.++|.+
T Consensus       246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~  324 (352)
T 3mcz_A          246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDR-VTPALSADFSLHMMVNTNHGELHPTPWIAG  324 (352)
T ss_dssp             TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTS-SSSHHHHHHHHHHHHHSTTCCCCCHHHHHH
T ss_pred             CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCC-CCCchHHHhhHHHHhhCCCCCcCCHHHHHH
Confidence            4669999999999999876  6899999999999999999998765432 2222222222211 1223455689999999


Q ss_pred             HHHHcCCceeEEEeeCcEEEEEEecCCCC
Q 026688          207 LCRACGLVDFKCTRNRGFVMFTATKPSQN  235 (235)
Q Consensus       207 ~l~~~Gf~~~~~~~~~~~~~~~~~k~~~~  235 (235)
                      +++++||++++. ..+...+++++||++.
T Consensus       325 ll~~aGf~~~~~-~~g~~~l~~a~kp~~e  352 (352)
T 3mcz_A          325 VVRDAGLAVGER-SIGRYTLLIGQRSSGE  352 (352)
T ss_dssp             HHHHTTCEEEEE-EETTEEEEEEECCCC-
T ss_pred             HHHHCCCceeee-ccCceEEEEEecCCCC
Confidence            999999999884 4677999999999763

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.92  E-value=1e-23  Score=163.20  Aligned_cols=167  Identities=16%  Similarity=0.175  Sum_probs=134.7

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      +......+.+++.+...++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++....     .++++.+.|+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~  111 (266)
T 3ujc_A           38 SGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-----NKIIFEANDI  111 (266)
T ss_dssp             TTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-----TTEEEEECCT
T ss_pred             cchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEECcc
Confidence            3445677888888887788999999999999999999974 359999999999999999876542     5799999999


Q ss_pred             ccCCCCCCceeEEEeccccccc--CChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688          124 SRLPFASSSIDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE  201 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (235)
                      .+.+++.++||+|++..+++|+  +++..+++++.++|+|||.+++.++................   ..  .+...++.
T Consensus       112 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~  186 (266)
T 3ujc_A          112 LTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYV---KQ--RKYTLITV  186 (266)
T ss_dssp             TTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHH---HH--HTCCCCCH
T ss_pred             ccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHH---hc--CCCCCCCH
Confidence            9988878999999999999999  67789999999999999999999987654222222222211   11  23456899


Q ss_pred             HHHHHHHHHcCCceeEEEee
Q 026688          202 REIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~~~~~~~  221 (235)
                      +++.++++++||+++.....
T Consensus       187 ~~~~~~l~~~Gf~~~~~~~~  206 (266)
T 3ujc_A          187 EEYADILTACNFKNVVSKDL  206 (266)
T ss_dssp             HHHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHHcCCeEEEEEeC
Confidence            99999999999998877643

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.91  E-value=1.9e-23  Score=160.71  Aligned_cols=177  Identities=16%  Similarity=0.163  Sum_probs=132.4

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      ...+.+.+...++.+|||+|||+|.++..+++.++. +|+|+|+|+.+++.++++..      ..++.+.++|+.+++++
T Consensus        33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~  105 (253)
T 3g5l_A           33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIE  105 (253)
T ss_dssp             HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCC
T ss_pred             HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCC
Confidence            445667777667899999999999999999998653 89999999999999998865      34799999999988887


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcc--------------cchhHHHHHH-----hHh
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN--------------LIPFSRLLRQ-----NMM  190 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~--------------~~~~~~~~~~-----~~~  190 (235)
                      .++||+|++..+++|++++..+++++.++|+|||.+++..+.......              ..++...+..     .+.
T Consensus       106 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (253)
T 3g5l_A          106 PDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFL  185 (253)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEET
T ss_pred             CCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeec
Confidence            899999999999999999999999999999999999998664311000              0000000000     000


Q ss_pred             hcCCceeecCHHHHHHHHHHcCCceeEEE------------------eeCcEEEEEEecCC
Q 026688          191 QISGSYTFLSEREIEDLCRACGLVDFKCT------------------RNRGFVMFTATKPS  233 (235)
Q Consensus       191 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~------------------~~~~~~~~~~~k~~  233 (235)
                      ........++.+++.++|+++||+++.+.                  ..+.+.++.++|..
T Consensus       186 ~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~~~~~~~~~~~~~~~~~P~fl~~~~~~~~  246 (253)
T 3g5l_A          186 GEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAPELKDLPEMQDEYRRPMMLLISATKQE  246 (253)
T ss_dssp             TEEEEEECCCHHHHHHHHHHTTEEEEEEECCCCCGGGSSCGGGGGGGTSCCEEEEEEEECC
T ss_pred             cccCccEecCHHHHHHHHHHcCCeeeeeecCCCchhhccChhHHHhhcCceEEEEEEeccc
Confidence            00011222399999999999999998887                  33456777777654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.91  E-value=3.3e-23  Score=161.39  Aligned_cols=171  Identities=20%  Similarity=0.255  Sum_probs=132.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      .+.+.+.......++.+|||+|||+|.++..+++.+|..+++++|+++.+++.+++++...+   ..++.+...|+.+.+
T Consensus        24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~  100 (276)
T 3mgg_A           24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG---IKNVKFLQANIFSLP  100 (276)
T ss_dssp             HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGCC
T ss_pred             HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEcccccCC
Confidence            34444455555567899999999999999999999878899999999999999999987765   347999999999988


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCc--ccchhHHHHHHhHh--hcCCceeecCHHH
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF--NLIPFSRLLRQNMM--QISGSYTFLSERE  203 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~  203 (235)
                      ++.++||+|++..+++|++++..+++++.++|+|||.+++.++......  ...+........+.  ........++..+
T Consensus       101 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (276)
T 3mgg_A          101 FEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQ  180 (276)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGG
T ss_pred             CCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence            8789999999999999999999999999999999999999887543211  11121222211111  1112234467789


Q ss_pred             HHHHHHHcCCceeEEEee
Q 026688          204 IEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~~~  221 (235)
                      +..+|+++||+++.+...
T Consensus       181 l~~~l~~aGf~~v~~~~~  198 (276)
T 3mgg_A          181 IYPLLQESGFEKIRVEPR  198 (276)
T ss_dssp             HHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHCCCCeEEEeeE
Confidence            999999999998887644

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.91  E-value=1.9e-23  Score=163.50  Aligned_cols=164  Identities=16%  Similarity=0.190  Sum_probs=124.9

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-CCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FAS  130 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~  130 (235)
                      .++..+... +.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.+++++...+.  ..++++.++|+.+.+ ++.
T Consensus        60 ~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~  134 (285)
T 4htf_A           60 RVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAKGV--SDNMQFIHCAAQDVASHLE  134 (285)
T ss_dssp             HHHHHTCSS-CCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-CC--GGGEEEEESCGGGTGGGCS
T ss_pred             HHHHhcCCC-CCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CcceEEEEcCHHHhhhhcC
Confidence            344444443 67999999999999999999854  999999999999999999877653  357999999998876 667


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchh---HHHHHHhH----hhcCCceeecCHHH
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF---SRLLRQNM----MQISGSYTFLSERE  203 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~  203 (235)
                      ++||+|++..+++|++++..+++++.++|+|||.+++.+++..........   ...+....    .....+..++++++
T Consensus       135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (285)
T 4htf_A          135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQ  214 (285)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHH
T ss_pred             CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHH
Confidence            899999999999999999999999999999999999998865321000000   00000000    01112346789999


Q ss_pred             HHHHHHHcCCceeEEEe
Q 026688          204 IEDLCRACGLVDFKCTR  220 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~~  220 (235)
                      +.++++++||+++.+..
T Consensus       215 l~~~l~~aGf~v~~~~~  231 (285)
T 4htf_A          215 VYLWLEEAGWQIMGKTG  231 (285)
T ss_dssp             HHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHCCCceeeeee
Confidence            99999999999887763

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.91  E-value=4.7e-23  Score=162.80  Aligned_cols=171  Identities=15%  Similarity=0.147  Sum_probs=131.2

Q ss_pred             CCCCeEEEecCCCchHHHHHH-HcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           60 VLGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~-~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      .++.+|||+|||+|..+..++ ...+..+|+++|+|+.+++.+++++...+.  ..++++.++|+.+.+++ ++||+|++
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~-~~fD~v~~  193 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL--AGQITLHRQDAWKLDTR-EGYDLLTS  193 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT--GGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECchhcCCcc-CCeEEEEE
Confidence            457899999999999999986 456678999999999999999999877653  34699999999998876 89999999


Q ss_pred             cccccccCChHH---HHHHHHHhccCCcEEEEEEeccCCCcc-cch-----h---HHHH-HHhHh-h-cCCceeecCHHH
Q 026688          139 GAAIHCWSSPST---GVAEISRVLRPGGVFVGTTYIVDGPFN-LIP-----F---SRLL-RQNMM-Q-ISGSYTFLSERE  203 (235)
Q Consensus       139 ~~~l~~~~~~~~---~l~~~~~~L~pgG~li~~~~~~~~~~~-~~~-----~---~~~~-~~~~~-~-~~~~~~~~~~~~  203 (235)
                      ..+++|++++..   +++++.++|+|||.+++.+........ ...     .   .... ...+. . ......+++.++
T Consensus       194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (305)
T 3ocj_A          194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ  273 (305)
T ss_dssp             CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHH
T ss_pred             CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHH
Confidence            999999998864   799999999999999998876532111 111     0   0010 01111 1 112235689999


Q ss_pred             HHHHHHHcCCceeEEEe--eCcEEEEEEecCC
Q 026688          204 IEDLCRACGLVDFKCTR--NRGFVMFTATKPS  233 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~~--~~~~~~~~~~k~~  233 (235)
                      +.++++++||+++.+..  .+.+..++++||.
T Consensus       274 ~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kpa  305 (305)
T 3ocj_A          274 TRAQLEEAGFTDLRFEDDRARLFPTVIARKPA  305 (305)
T ss_dssp             HHHHHHHTTCEEEEEECCTTSSSCEEEEECCC
T ss_pred             HHHHHHHCCCEEEEEEcccCceeeEEEEecCC
Confidence            99999999999988874  3456678888874

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.91  E-value=9.9e-23  Score=161.44  Aligned_cols=162  Identities=16%  Similarity=0.124  Sum_probs=130.7

Q ss_pred             HHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           51 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        51 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      +.+.+.+. ..++.+|||+|||+|.++..+++.. ..+|+|+|+++.+++.|++++...+.  ..++++.++|+.+.+++
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~  182 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRI--DDHVRSRVCNMLDTPFD  182 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSCCCC
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCceEEEECChhcCCCC
Confidence            34666666 6678899999999999999999873 24999999999999999999887664  34799999999998887


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCc-ccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      .++||+|++..+++|+ ++..+++++.++|+|||.+++.++...... ........+....     ...+++.+++.+++
T Consensus       183 ~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~l  256 (312)
T 3vc1_A          183 KGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHF-----ECNIHSRREYLRAM  256 (312)
T ss_dssp             TTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHH-----TCCCCBHHHHHHHH
T ss_pred             CCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhh-----cCCCCCHHHHHHHH
Confidence            8899999999999999 588999999999999999999988765422 2222332222211     12367899999999


Q ss_pred             HHcCCceeEEEee
Q 026688          209 RACGLVDFKCTRN  221 (235)
Q Consensus       209 ~~~Gf~~~~~~~~  221 (235)
                      +++||+++.+...
T Consensus       257 ~~aGf~~~~~~~~  269 (312)
T 3vc1_A          257 ADNRLVPHTIVDL  269 (312)
T ss_dssp             HTTTEEEEEEEEC
T ss_pred             HHCCCEEEEEEeC
Confidence            9999998887753

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.91  E-value=2.8e-22  Score=161.79  Aligned_cols=177  Identities=16%  Similarity=0.161  Sum_probs=138.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+.+.+...++.+|||+|||+|.++..+++..|..+++++|+ +.+++.+++++...+.  ..++++..+|+.+.++
T Consensus       178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~  254 (359)
T 1x19_A          178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKESY  254 (359)
T ss_dssp             HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC--TTTEEEEECCTTTSCC
T ss_pred             hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC--CCCEEEEeCccccCCC
Confidence            345566666666678999999999999999999988889999999 9999999999877653  3469999999988765


Q ss_pred             CCCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh---cCCceeecCHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---ISGSYTFLSERE  203 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  203 (235)
                      +.  +|+|++..+++++++  ..++++++.++|+|||.+++.+...+..  ..+....+...+..   ......+++.++
T Consensus       255 ~~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~t~~e  330 (359)
T 1x19_A          255 PE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP--ENPNFDYLSHYILGAGMPFSVLGFKEQAR  330 (359)
T ss_dssp             CC--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT--TSCCHHHHHHHGGGGGSSCCCCCCCCGGG
T ss_pred             CC--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC--CCchHHHHHHHHHhcCCCCcccCCCCHHH
Confidence            43  399999999999987  5789999999999999999988776432  12222222211111   111234589999


Q ss_pred             HHHHHHHcCCceeEEEeeCcEEEEEEecC
Q 026688          204 IEDLCRACGLVDFKCTRNRGFVMFTATKP  232 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~k~  232 (235)
                      |.++++++||+++++...+...++.++||
T Consensus       331 ~~~ll~~aGf~~v~~~~~~~~~vi~a~kp  359 (359)
T 1x19_A          331 YKEILESLGYKDVTMVRKYDHLLVQAVKP  359 (359)
T ss_dssp             HHHHHHHHTCEEEEEEEETTEEEEEEECC
T ss_pred             HHHHHHHCCCceEEEEecCCceEEEEeCC
Confidence            99999999999988877667778888886

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.91  E-value=6.6e-23  Score=156.62  Aligned_cols=159  Identities=19%  Similarity=0.301  Sum_probs=128.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+...+..  +.+|||+|||+|.++..+++.+.  +|+++|+++.+++.++++..      ..++++.+.|+.+
T Consensus        40 ~~~~~~~l~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~  109 (242)
T 3l8d_A           40 RSTIIPFFEQYVKK--EAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERGE------GPDLSFIKGDLSS  109 (242)
T ss_dssp             TTTHHHHHHHHSCT--TCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTTC------BTTEEEEECBTTB
T ss_pred             HHHHHHHHHHHcCC--CCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhcc------cCCceEEEcchhc
Confidence            34556666666653  78999999999999999999865  99999999999999988642      4579999999999


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  205 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (235)
                      .+++.++||+|++..+++|++++..+++++.++|+|||.+++.++..........+    . .......+...+++.++.
T Consensus       110 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~  184 (242)
T 3l8d_A          110 LPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSY----P-RLYGKDVVCNTMMPWEFE  184 (242)
T ss_dssp             CSSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGG----G-GGGTCCCSSCCCCHHHHH
T ss_pred             CCCCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhh----h-hhccccccccCCCHHHHH
Confidence            88878999999999999999999999999999999999999998765432111111    1 111223345678999999


Q ss_pred             HHHHHcCCceeEEE
Q 026688          206 DLCRACGLVDFKCT  219 (235)
Q Consensus       206 ~~l~~~Gf~~~~~~  219 (235)
                      ++++++||+++...
T Consensus       185 ~~l~~~Gf~~~~~~  198 (242)
T 3l8d_A          185 QLVKEQGFKVVDGI  198 (242)
T ss_dssp             HHHHHTTEEEEEEE
T ss_pred             HHHHHcCCEEEEee
Confidence            99999999988775

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.90  E-value=2.1e-23  Score=159.92  Aligned_cols=146  Identities=11%  Similarity=0.053  Sum_probs=117.6

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++.+|||+|||+|.++..+++.++  +|+|+|+|+.+++.|+++...       ++++.+.|+.+. .+.++||+|++..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~-------~v~~~~~d~~~~-~~~~~fD~v~~~~  111 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD-------GITYIHSRFEDA-QLPRRYDNIVLTH  111 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS-------CEEEEESCGGGC-CCSSCEEEEEEES
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhC-------CeEEEEccHHHc-CcCCcccEEEEhh
Confidence            467999999999999999999877  899999999999999987531       689999999887 3568899999999


Q ss_pred             cccccCChHHHHHHHH-HhccCCcEEEEEEeccCCCcccchhHHHHHHh---------HhhcCCceeecCHHHHHHHHHH
Q 026688          141 AIHCWSSPSTGVAEIS-RVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN---------MMQISGSYTFLSEREIEDLCRA  210 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~-~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~  210 (235)
                      +++|++++..+++++. ++|+|||.+++.+++.....   .........         ......+...++.+++.+++++
T Consensus       112 ~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  188 (250)
T 2p7i_A          112 VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS---RQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR  188 (250)
T ss_dssp             CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHH---HHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHH---HHHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence            9999999999999999 99999999999998754210   000000000         0012345567899999999999


Q ss_pred             cCCceeEEE
Q 026688          211 CGLVDFKCT  219 (235)
Q Consensus       211 ~Gf~~~~~~  219 (235)
                      +||+++...
T Consensus       189 ~Gf~~~~~~  197 (250)
T 2p7i_A          189 AGLQVTYRS  197 (250)
T ss_dssp             TTCEEEEEE
T ss_pred             CCCeEEEEe
Confidence            999988775

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.90  E-value=2.6e-23  Score=156.46  Aligned_cols=168  Identities=15%  Similarity=0.089  Sum_probs=123.7

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCC--CCCeeEEeccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP--KENFLLVRADI  123 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--~~~~~~~~~d~  123 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.+++++...+...  ..++++.++|+
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (217)
T 3jwh_A           14 NQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL   93 (217)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc
Confidence            3455667777776666889999999999999999998877799999999999999999987554210  12799999999


Q ss_pred             ccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE  201 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (235)
                      ...+.+.++||+|++..+++|++++  ..+++++.++|+|||.+++.....     .......+.........+...++.
T Consensus        94 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  168 (217)
T 3jwh_A           94 TYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIE-----YNVKFANLPAGKLRHKDHRFEWTR  168 (217)
T ss_dssp             TSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHH-----HHHHTC-----------CCSCBCH
T ss_pred             ccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcc-----cchhhcccccccccccccccccCH
Confidence            7776666899999999999999876  799999999999999666554321     000000011111112344556899


Q ss_pred             HHHH----HHHHHcCCceeEE
Q 026688          202 REIE----DLCRACGLVDFKC  218 (235)
Q Consensus       202 ~~~~----~~l~~~Gf~~~~~  218 (235)
                      +++.    ++++++||++...
T Consensus       169 ~~l~~~~~~~~~~~Gf~v~~~  189 (217)
T 3jwh_A          169 SQFQNWANKITERFAYNVQFQ  189 (217)
T ss_dssp             HHHHHHHHHHHHHSSEEEEEC
T ss_pred             HHHHHHHHHHHHHcCceEEEE
Confidence            9998    8999999987554

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.90  E-value=1e-22  Score=151.61  Aligned_cols=140  Identities=11%  Similarity=0.127  Sum_probs=119.1

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++        ..++.+.++|+.+.+++.++||+|++..+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQT--------HPSVTFHHGTITDLSDSPKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHH--------CTTSEEECCCGGGGGGSCCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHh--------CCCCeEEeCcccccccCCCCeEEEEehhh
Confidence            68999999999999999999865  999999999999999987        34789999999998877889999999999


Q ss_pred             ccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          142 IHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       142 l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      ++|++  ++..+++++.++|+|||.+++.++.......           +.....+...++.+++.++++++||+++.+.
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  180 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEP-----------MYHPVATAYRWPLPELAQALETAGFQVTSSH  180 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEE-----------ECCSSSCEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhh-----------hhchhhhhccCCHHHHHHHHHHCCCcEEEEE
Confidence            99997  7789999999999999999999987643110           1112234567899999999999999998887


Q ss_pred             eeC
Q 026688          220 RNR  222 (235)
Q Consensus       220 ~~~  222 (235)
                      ..+
T Consensus       181 ~~~  183 (203)
T 3h2b_A          181 WDP  183 (203)
T ss_dssp             ECT
T ss_pred             ecC
Confidence            544

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.90  E-value=3e-23  Score=157.96  Aligned_cols=153  Identities=17%  Similarity=0.214  Sum_probs=121.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ...+..+....... +.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.+++++...+.  ..++++.++|+.+.
T Consensus        53 ~~~l~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~  127 (235)
T 3lcc_A           53 TPLIVHLVDTSSLP-LGRALVPGCGGGHDVVAMASPE--RFVVGLDISESALAKANETYGSSPK--AEYFSFVKEDVFTW  127 (235)
T ss_dssp             CHHHHHHHHTTCSC-CEEEEEETCTTCHHHHHHCBTT--EEEEEECSCHHHHHHHHHHHTTSGG--GGGEEEECCCTTTC
T ss_pred             CHHHHHHHHhcCCC-CCCEEEeCCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHHHhhccCC--CcceEEEECchhcC
Confidence            33444444444433 4699999999999999998754  4899999999999999998875322  35799999999987


Q ss_pred             CCCCCceeEEEecccccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHH
Q 026688          127 PFASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI  204 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (235)
                      + +.++||+|++..+++|++  +...+++++.++|+|||.+++..+.....                ..+....++.+++
T Consensus       128 ~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----------------~~~~~~~~~~~~~  190 (235)
T 3lcc_A          128 R-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH----------------VGGPPYKVDVSTF  190 (235)
T ss_dssp             C-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC----------------CSCSSCCCCHHHH
T ss_pred             C-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc----------------CCCCCccCCHHHH
Confidence            6 456999999999999998  67899999999999999999988765321                1122234789999


Q ss_pred             HHHHHHcCCceeEEEee
Q 026688          205 EDLCRACGLVDFKCTRN  221 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~~~  221 (235)
                      .++++++||+++.+...
T Consensus       191 ~~~l~~~Gf~~~~~~~~  207 (235)
T 3lcc_A          191 EEVLVPIGFKAVSVEEN  207 (235)
T ss_dssp             HHHHGGGTEEEEEEEEC
T ss_pred             HHHHHHcCCeEEEEEec
Confidence            99999999999888743

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.90  E-value=3.8e-22  Score=161.45  Aligned_cols=173  Identities=11%  Similarity=0.080  Sum_probs=135.9

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      ..+.+.+...+..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++++...+.  ..++++..+|+. .+++.
T Consensus       192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l--~~~v~~~~~d~~-~~~p~  267 (369)
T 3gwz_A          192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL--ADRCEILPGDFF-ETIPD  267 (369)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTT-TCCCS
T ss_pred             HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc--CCceEEeccCCC-CCCCC
Confidence            4455556656678999999999999999999998889999999 9999999999887654  458999999998 45554


Q ss_pred             CceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          131 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                       .||+|++..++|+++++.  +++++++++|+|||++++.+...+...  .+. ..+.............++.++|.+++
T Consensus       268 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~--~~~-~~~~d~~~~~~~~g~~~t~~e~~~ll  343 (369)
T 3gwz_A          268 -GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERP--AAS-TLFVDLLLLVLVGGAERSESEFAALL  343 (369)
T ss_dssp             -SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSC--CHH-HHHHHHHHHHHHSCCCBCHHHHHHHH
T ss_pred             -CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCC--CCc-hhHhhHHHHhhcCCccCCHHHHHHHH
Confidence             899999999999999875  799999999999999999998765422  121 22221111111234568999999999


Q ss_pred             HHcCCceeEEEe--eCcEEEEEEec
Q 026688          209 RACGLVDFKCTR--NRGFVMFTATK  231 (235)
Q Consensus       209 ~~~Gf~~~~~~~--~~~~~~~~~~k  231 (235)
                      +++||+++++..  .+...++.+++
T Consensus       344 ~~aGf~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          344 EKSGLRVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             HTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred             HHCCCeEEEEEECCCCCcEEEEEEe
Confidence            999999999876  34566666664

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.90  E-value=6.5e-23  Score=160.00  Aligned_cols=157  Identities=22%  Similarity=0.273  Sum_probs=123.7

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      +.+.+.+...++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.++++.        .++.+.++|+.++++ .
T Consensus        47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~  115 (279)
T 3ccf_A           47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQS--GAEVLGTDNAATMIEKARQNY--------PHLHFDVADARNFRV-D  115 (279)
T ss_dssp             CHHHHHHCCCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC--------TTSCEEECCTTTCCC-S
T ss_pred             HHHHHHhCCCCCCEEEEecCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHhhC--------CCCEEEECChhhCCc-C
Confidence            34555566666889999999999999999984  459999999999999998864        368899999998876 5


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh-------cCCceeecCHHH
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ-------ISGSYTFLSERE  203 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  203 (235)
                      ++||+|++..+++|++++..+++++.++|+|||.+++..+....   ...+...+...+..       ...+..+++.++
T Consensus       116 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (279)
T 3ccf_A          116 KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGN---IKYILEALYNALETLGIHNPQALNPWYFPSIGE  192 (279)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTT---THHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHH
T ss_pred             CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcc---hHHHHHHHHHHHHhcCCccccCcCceeCCCHHH
Confidence            78999999999999999999999999999999999998876532   12222222221111       122345779999


Q ss_pred             HHHHHHHcCCceeEEEee
Q 026688          204 IEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~~~  221 (235)
                      +.++|+++||+++.....
T Consensus       193 ~~~~l~~aGf~~~~~~~~  210 (279)
T 3ccf_A          193 YVNILEKQGFDVTYAALF  210 (279)
T ss_dssp             HHHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHcCCEEEEEEEe
Confidence            999999999998776644

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.90  E-value=5.6e-23  Score=154.78  Aligned_cols=167  Identities=16%  Similarity=0.156  Sum_probs=123.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCC--CCCeeEEecccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP--KENFLLVRADIS  124 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--~~~~~~~~~d~~  124 (235)
                      ....+.+.+.+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.+++++...+...  ..++++.++|+.
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~   94 (219)
T 3jwg_A           15 QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV   94 (219)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence            344566666666566889999999999999999998877899999999999999999886543200  027999999998


Q ss_pred             cCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHH
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER  202 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (235)
                      ..+.+.++||+|++..+++|++++  ..+++++.++|+|||.++.. ++.......... .   ........+...++.+
T Consensus        95 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~-~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~  169 (219)
T 3jwg_A           95 YRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST-PNKEYNFHYGNL-F---EGNLRHRDHRFEWTRK  169 (219)
T ss_dssp             SCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE-EBGGGGGCCCCT---------GGGCCTTSBCHH
T ss_pred             ccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc-cchhhhhhhccc-C---cccccccCceeeecHH
Confidence            777667899999999999999876  68999999999999955544 433210000000 0   0001123445568899


Q ss_pred             HHH----HHHHHcCCceeEE
Q 026688          203 EIE----DLCRACGLVDFKC  218 (235)
Q Consensus       203 ~~~----~~l~~~Gf~~~~~  218 (235)
                      ++.    ++++++||++...
T Consensus       170 ~l~~~~~~l~~~~Gf~v~~~  189 (219)
T 3jwg_A          170 EFQTWAVKVAEKYGYSVRFL  189 (219)
T ss_dssp             HHHHHHHHHHHHHTEEEEEE
T ss_pred             HHHHHHHHHHHHCCcEEEEE
Confidence            988    8899999987555

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.90  E-value=2.3e-22  Score=153.87  Aligned_cols=179  Identities=15%  Similarity=0.107  Sum_probs=130.9

Q ss_pred             HHHHHHHhhcCCC--CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           48 KEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        48 ~~~~~i~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ...+.+.+.+...  ++.+|||+|||+|.++..+++.+.  +++++|+|+.+++.++++....+    .++.+.+.|+.+
T Consensus        22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~   95 (246)
T 1y8c_A           22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISN   95 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGG
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhcC----CCeEEEeccccc
Confidence            3444555544332  578999999999999999999865  89999999999999999887643    278999999998


Q ss_pred             CCCCCCceeEEEecc-cccccC---ChHHHHHHHHHhccCCcEEEEEEeccCCCcccch---h---HHHHHHhHh-----
Q 026688          126 LPFASSSIDAVHAGA-AIHCWS---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP---F---SRLLRQNMM-----  190 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~-~l~~~~---~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~---~---~~~~~~~~~-----  190 (235)
                      .+++ ++||+|++.. +++|++   ++..+++++.++|+|||.+++..++........+   +   .......+.     
T Consensus        96 ~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (246)
T 1y8c_A           96 LNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFED  174 (246)
T ss_dssp             CCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEET
T ss_pred             CCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCC
Confidence            8766 8899999998 999994   4568999999999999999997765321000000   0   000000000     


Q ss_pred             --------------------hcCCceeecCHHHHHHHHHHcCCceeEEEee---------CcEEEEEEecCC
Q 026688          191 --------------------QISGSYTFLSEREIEDLCRACGLVDFKCTRN---------RGFVMFTATKPS  233 (235)
Q Consensus       191 --------------------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~---------~~~~~~~~~k~~  233 (235)
                                          ....+.++++.+++.++|+++||+++.+...         ....+++++|+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~~  246 (246)
T 1y8c_A          175 DLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLGG  246 (246)
T ss_dssp             TEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEECC
T ss_pred             ceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEecC
Confidence                                0011246789999999999999999888632         356788999874

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.90  E-value=4.3e-22  Score=149.07  Aligned_cols=147  Identities=21%  Similarity=0.263  Sum_probs=119.2

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ...+..++..+.  ++.+|||+|||+|.++..+++.+.  +++++|+|+.+++.++++.         ++.+...|+...
T Consensus        31 ~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~   97 (211)
T 3e23_A           31 SATLTKFLGELP--AGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL---------GRPVRTMLFHQL   97 (211)
T ss_dssp             CHHHHHHHTTSC--TTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---------TSCCEECCGGGC
T ss_pred             hHHHHHHHHhcC--CCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc---------CCceEEeeeccC
Confidence            344445555444  378999999999999999999854  9999999999999999875         356788899887


Q ss_pred             CCCCCceeEEEecccccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHH
Q 026688          127 PFASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI  204 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (235)
                      + +.++||+|++..+++|++  +...+++++.++|+|||.+++..+.......            ........+++.+++
T Consensus        98 ~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~  164 (211)
T 3e23_A           98 D-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR------------DKLARYYNYPSEEWL  164 (211)
T ss_dssp             C-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE------------CTTSCEECCCCHHHH
T ss_pred             C-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc------------cccchhccCCCHHHH
Confidence            7 678999999999999998  6679999999999999999998776542110            112234567899999


Q ss_pred             HHHHHHcC-CceeEEE
Q 026688          205 EDLCRACG-LVDFKCT  219 (235)
Q Consensus       205 ~~~l~~~G-f~~~~~~  219 (235)
                      .++++++| |+++.+.
T Consensus       165 ~~~l~~aG~f~~~~~~  180 (211)
T 3e23_A          165 RARYAEAGTWASVAVE  180 (211)
T ss_dssp             HHHHHHHCCCSEEEEE
T ss_pred             HHHHHhCCCcEEEEEE
Confidence            99999999 9988776

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=2.6e-22  Score=154.84  Aligned_cols=159  Identities=11%  Similarity=0.035  Sum_probs=123.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ......+++.+...++.+|||+|||+|.++..+++..+..+++++|+|+.+++.++++        ..++.+...|+.+.
T Consensus        19 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~   90 (259)
T 2p35_A           19 TRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR--------LPNTNFGKADLATW   90 (259)
T ss_dssp             GHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH--------STTSEEEECCTTTC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CCCcEEEECChhhc
Confidence            3445567777777778999999999999999999986667999999999999999987        23688999999887


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHh--Hhhc-----CCceeec
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN--MMQI-----SGSYTFL  199 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~  199 (235)
                      + +.++||+|++..+++|++++..+++++.++|+|||.+++.++..... ........+...  +...     ..+..++
T Consensus        91 ~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T 2p35_A           91 K-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQE-PTHIAMHETADGGPWKDAFSGGGLRRKPLP  168 (259)
T ss_dssp             C-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTS-HHHHHHHHHHHHSTTGGGC-------CCCC
T ss_pred             C-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCc-HHHHHHHHHhcCcchHHHhccccccccCCC
Confidence            7 67899999999999999999999999999999999999998754211 111111111111  1111     1245678


Q ss_pred             CHHHHHHHHHHcCCce
Q 026688          200 SEREIEDLCRACGLVD  215 (235)
Q Consensus       200 ~~~~~~~~l~~~Gf~~  215 (235)
                      +.+++.++|+++||++
T Consensus       169 ~~~~~~~~l~~aGf~v  184 (259)
T 2p35_A          169 PPSDYFNALSPKSSRV  184 (259)
T ss_dssp             CHHHHHHHHGGGEEEE
T ss_pred             CHHHHHHHHHhcCCce
Confidence            9999999999999974

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.90  E-value=5.3e-22  Score=158.75  Aligned_cols=178  Identities=12%  Similarity=0.137  Sum_probs=135.5

Q ss_pred             HHHHHhhcCC--CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           50 FELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        50 ~~~i~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      ...+.+.+..  .++.+|||+|||+|..+..+++..|..+++++|++ .+++.+++++...+.  ..++++...|+.+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~  228 (335)
T 2r3s_A          152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV--ASRYHTIAGSAFEVD  228 (335)
T ss_dssp             HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC--GGGEEEEESCTTTSC
T ss_pred             HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC--CcceEEEecccccCC
Confidence            3455555554  56789999999999999999999887899999999 999999998876653  346999999998766


Q ss_pred             CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH-hhcCCceeecCHHHH
Q 026688          128 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM-MQISGSYTFLSEREI  204 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  204 (235)
                      ++. .||+|++..+++|++++  .++++++.++|+|||.+++.++...... ..+....+.... .........++.+++
T Consensus       229 ~~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~  306 (335)
T 2r3s_A          229 YGN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDR-ITPPDAAAFSLVMLATTPNGDAYTFAEY  306 (335)
T ss_dssp             CCS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTS-SCSHHHHHHHHHHHHHSSSCCCCCHHHH
T ss_pred             CCC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCc-CCchHHHHHHHHHHeeCCCCCcCCHHHH
Confidence            554 49999999999999765  5899999999999999999988764321 122222222211 112224567899999


Q ss_pred             HHHHHHcCCceeEEEeeC-cEEEEEEecC
Q 026688          205 EDLCRACGLVDFKCTRNR-GFVMFTATKP  232 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~~~~-~~~~~~~~k~  232 (235)
                      .++++++||+++++...+ ...++++++|
T Consensus       307 ~~ll~~aGf~~~~~~~~~~~~~~i~~~~~  335 (335)
T 2r3s_A          307 ESMFSNAGFSHSQLHSLPTTQQQVIVAYK  335 (335)
T ss_dssp             HHHHHHTTCSEEEEECCTTSSSEEEEEEC
T ss_pred             HHHHHHCCCCeeeEEECCCCceeEEEecC
Confidence            999999999998887654 3455666543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.90  E-value=1.4e-22  Score=156.74  Aligned_cols=161  Identities=19%  Similarity=0.230  Sum_probs=121.1

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc-
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA-  140 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~-  140 (235)
                      +.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++.        .++.+.++|+.+.++ .++||+|++.. 
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~fD~v~~~~~  119 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRN--------PDAVLHHGDMRDFSL-GRRFSAVTCMFS  119 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTCCC-SCCEEEEEECTT
T ss_pred             CCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCEEEECChHHCCc-cCCcCEEEEcCc
Confidence            68999999999999999999876  8999999999999999873        368899999998876 68999999998 


Q ss_pred             cccccCC---hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhH-------H----HHHH------------hH-----
Q 026688          141 AIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS-------R----LLRQ------------NM-----  189 (235)
Q Consensus       141 ~l~~~~~---~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~-------~----~~~~------------~~-----  189 (235)
                      +++|+++   ...+++++.++|+|||.+++..+..........+.       .    .++.            .+     
T Consensus       120 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (263)
T 3pfg_A          120 SIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGP  199 (263)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEET
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecC
Confidence            9999964   35889999999999999999754332110000000       0    0000            00     


Q ss_pred             ----h--hcCCceeecCHHHHHHHHHHcCCceeEEEee-CcEEEEEEecCC
Q 026688          190 ----M--QISGSYTFLSEREIEDLCRACGLVDFKCTRN-RGFVMFTATKPS  233 (235)
Q Consensus       190 ----~--~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-~~~~~~~~~k~~  233 (235)
                          .  ......++++.+++.++|+++||+++.+... ....+++++||.
T Consensus       200 ~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a  250 (263)
T 3pfg_A          200 DRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGA  250 (263)
T ss_dssp             TTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC
T ss_pred             CCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCC
Confidence                0  0001256789999999999999999888643 456778888874

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.89  E-value=2e-22  Score=153.08  Aligned_cols=162  Identities=19%  Similarity=0.234  Sum_probs=125.4

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCC--CCCeeEEecccccCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP--KENFLLVRADISRLPFA  129 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--~~~~~~~~~d~~~~~~~  129 (235)
                      .+...+.  ++.+|||+|||+|.++..+++.+.  +++++|+++.+++.+++++...+...  ..++.+.+.|+...+++
T Consensus        23 ~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   98 (235)
T 3sm3_A           23 IIHNYLQ--EDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFH   98 (235)
T ss_dssp             THHHHCC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSC
T ss_pred             HHHHhCC--CCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCC
Confidence            4444444  378999999999999999999854  99999999999999999887654211  12579999999988887


Q ss_pred             CCceeEEEecccccccCChH---HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhc--------------
Q 026688          130 SSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI--------------  192 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~---~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  192 (235)
                      .++||+|++..+++|++++.   .+++++.++|+|||.+++.++......  ..+...+...+...              
T Consensus        99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (235)
T 3sm3_A           99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--KLYRKRYLHDFPITKEEGSFLARDPETG  176 (235)
T ss_dssp             TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--HHHHHHHHHHHHHHCSTTEEEEECTTTC
T ss_pred             CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--HHHHHHhhhhccchhhhcceEecccccC
Confidence            88999999999999999987   899999999999999999988764211  11111111111110              


Q ss_pred             --CCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          193 --SGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       193 --~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                        ..+.+.++.+++.++++++||+++.+.
T Consensus       177 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~  205 (235)
T 3sm3_A          177 ETEFIAHHFTEKELVFLLTDCRFEIDYFR  205 (235)
T ss_dssp             CEEEEEECBCHHHHHHHHHTTTEEEEEEE
T ss_pred             CcceeeEeCCHHHHHHHHHHcCCEEEEEE
Confidence              112467899999999999999988775

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.89  E-value=2.7e-22  Score=154.30  Aligned_cols=155  Identities=12%  Similarity=0.056  Sum_probs=124.1

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      ..++..+...++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.++++....     .++++.+.|+.+.+++.
T Consensus        83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~  156 (254)
T 1xtp_A           83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCS
T ss_pred             HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC-----CceEEEEccHHHCCCCC
Confidence            455556666668999999999999999998876 357999999999999999987542     46899999999888777


Q ss_pred             CceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          131 SSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      ++||+|++..+++|+++  +..+++++.++|+|||.+++.++........           .....+...++.+++.+++
T Consensus       157 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l  225 (254)
T 1xtp_A          157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL-----------VDKEDSSLTRSDIHYKRLF  225 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE-----------EETTTTEEEBCHHHHHHHH
T ss_pred             CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccce-----------ecccCCcccCCHHHHHHHH
Confidence            89999999999999954  6799999999999999999998644221110           0112334567999999999


Q ss_pred             HHcCCceeEEEeeC
Q 026688          209 RACGLVDFKCTRNR  222 (235)
Q Consensus       209 ~~~Gf~~~~~~~~~  222 (235)
                      +++||+++......
T Consensus       226 ~~aGf~~~~~~~~~  239 (254)
T 1xtp_A          226 NESGVRVVKEAFQE  239 (254)
T ss_dssp             HHHTCCEEEEEECT
T ss_pred             HHCCCEEEEeeecC
Confidence            99999998886443

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.89  E-value=4.8e-22  Score=149.40  Aligned_cols=170  Identities=17%  Similarity=0.117  Sum_probs=124.5

Q ss_pred             HHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           51 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        51 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      ..+.+.+. ..++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.+++    .+   ..++++.++|+.+. ++
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~----~~---~~~~~~~~~d~~~~-~~  104 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGR----HG---LDNVEFRQQDLFDW-TP  104 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGG----GC---CTTEEEEECCTTSC-CC
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHh----cC---CCCeEEEecccccC-CC
Confidence            34444443 44568999999999999999999854  99999999999999987    11   35799999999887 56


Q ss_pred             CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh---hcCC----ceeecC
Q 026688          130 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---QISG----SYTFLS  200 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~  200 (235)
                      .++||+|++..+++|++++  ..+++++.++|+|||.+++.++..........+.......+.   ....    ...+++
T Consensus       105 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (218)
T 3ou2_A          105 DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRS  184 (218)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCC
T ss_pred             CCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCC
Confidence            7899999999999999986  789999999999999999999876321100000000000000   0111    123579


Q ss_pred             HHHHHHHHHHcCCceeEEEeeCcEEEEEEe
Q 026688          201 EREIEDLCRACGLVDFKCTRNRGFVMFTAT  230 (235)
Q Consensus       201 ~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~  230 (235)
                      ++++.++++++||++......+.....+++
T Consensus       185 ~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~  214 (218)
T 3ou2_A          185 PAELTERLTALGWSCSVDEVHPGFLYATCR  214 (218)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHCCCEEEeeeccccceEeecC
Confidence            999999999999997666666666666655

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.89  E-value=1.6e-21  Score=153.85  Aligned_cols=168  Identities=13%  Similarity=0.063  Sum_probs=129.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+.+.+...++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.|++++...+.  ..++++...|+.++  
T Consensus        60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~--  134 (302)
T 3hem_A           60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWEEF--  134 (302)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCC--SSCEEEEECCGGGC--
T ss_pred             HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECCHHHc--
Confidence            345567777777789999999999999999999843 5999999999999999999887664  34799999999875  


Q ss_pred             CCCceeEEEecccccccCCh---------HHHHHHHHHhccCCcEEEEEEeccCCCcccchh-------HHHHHHhHhh-
Q 026688          129 ASSSIDAVHAGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-------SRLLRQNMMQ-  191 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~---------~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~-------~~~~~~~~~~-  191 (235)
                       .++||+|++..+++|++++         ..+++++.++|+|||.+++.++...........       ...+...+.. 
T Consensus       135 -~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (302)
T 3hem_A          135 -DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE  213 (302)
T ss_dssp             -CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             -CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHh
Confidence             5889999999999999776         689999999999999999999876431100000       0000011111 


Q ss_pred             cCCceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688          192 ISGSYTFLSEREIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                      ........+.+++.++++++||+++.....+
T Consensus       214 ~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~  244 (302)
T 3hem_A          214 IFPGGRLPRISQVDYYSSNAGWKVERYHRIG  244 (302)
T ss_dssp             TCTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             cCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence            1122356789999999999999998886544

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.89  E-value=1.6e-21  Score=156.78  Aligned_cols=177  Identities=14%  Similarity=0.139  Sum_probs=137.1

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      ..+.+........+|||||||+|.++..+++++|..+++..|. |.+++.+++++...+   ..++++..+|+.+.+.  
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~---~~rv~~~~gD~~~~~~--  242 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE---EEQIDFQEGDFFKDPL--  242 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCC--
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc---cCceeeecCccccCCC--
Confidence            3444555555568999999999999999999999999999997 889999998876543   4689999999987554  


Q ss_pred             CceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          131 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      ..+|+|++..++|++++.+  ++|+++++.|+|||.+++.+...+.. ...+....+.............+|.++|+++|
T Consensus       243 ~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~-~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll  321 (353)
T 4a6d_A          243 PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED-RRGPLLTQLYSLNMLVQTEGQERTPTHYHMLL  321 (353)
T ss_dssp             CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTT-SCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHH
T ss_pred             CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCC-CCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHH
Confidence            3579999999999999874  78999999999999999999876432 22333333332222222334567999999999


Q ss_pred             HHcCCceeEEEeeC-cEEEEEEecCCC
Q 026688          209 RACGLVDFKCTRNR-GFVMFTATKPSQ  234 (235)
Q Consensus       209 ~~~Gf~~~~~~~~~-~~~~~~~~k~~~  234 (235)
                      +++||+++++...+ ...+++|+|--+
T Consensus       322 ~~AGf~~v~v~~~~~~~~~i~ArKgt~  348 (353)
T 4a6d_A          322 SSAGFRDFQFKKTGAIYDAILARKGTH  348 (353)
T ss_dssp             HHHTCEEEEEECCSSSCEEEEEECCCC
T ss_pred             HHCCCceEEEEEcCCceEEEEEEecCc
Confidence            99999999987655 567889998654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.89  E-value=1.3e-21  Score=153.18  Aligned_cols=167  Identities=18%  Similarity=0.159  Sum_probs=127.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+++.+...++.+|||+|||+|.++..+++... .+|+|+|+|+.+++.+++++...+.  ..++++...|+.+++ 
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~-  127 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSEN--LRSKRVLLAGWEQFD-  127 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCC--CSCEEEEESCGGGCC-
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCC--CCCeEEEECChhhCC-
Confidence            445666777777788999999999999999985432 3999999999999999999876654  357999999997765 


Q ss_pred             CCCceeEEEeccccccc--CChHHHHHHHHHhccCCcEEEEEEeccCCCcc----cch--h-HHHHHHhH-hhcCCceee
Q 026688          129 ASSSIDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN----LIP--F-SRLLRQNM-MQISGSYTF  198 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~----~~~--~-~~~~~~~~-~~~~~~~~~  198 (235)
                        ++||+|++..+++|+  .++..+++++.++|+|||.+++.++.......    ..+  . .......+ .........
T Consensus       128 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (287)
T 1kpg_A          128 --EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL  205 (287)
T ss_dssp             --CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred             --CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCC
Confidence              789999999999999  56789999999999999999999987643111    000  0 00111111 112223456


Q ss_pred             cCHHHHHHHHHHcCCceeEEEee
Q 026688          199 LSEREIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~~~  221 (235)
                      .+.+++.++++++||+++.....
T Consensus       206 ~s~~~~~~~l~~aGf~~~~~~~~  228 (287)
T 1kpg_A          206 PSIPMVQECASANGFTVTRVQSL  228 (287)
T ss_dssp             CCHHHHHHHHHTTTCEEEEEEEC
T ss_pred             CCHHHHHHHHHhCCcEEEEEEeC
Confidence            79999999999999999887643

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.89  E-value=7.9e-22  Score=152.40  Aligned_cols=156  Identities=19%  Similarity=0.180  Sum_probs=119.7

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ...++.+|||+|||+|.++..+++.+  .+++|+|+|+.+++.+++++ ...   ..++.+..+|+.+.+++.++||+|+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~-~~~---~~~~~~~~~d~~~~~~~~~~fD~v~  109 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARG--YRYIALDADAAMLEVFRQKI-AGV---DRKVQVVQADARAIPLPDESVHGVI  109 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTT--CEEEEEESCHHHHHHHHHHT-TTS---CTTEEEEESCTTSCCSCTTCEEEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHh-hcc---CCceEEEEcccccCCCCCCCeeEEE
Confidence            44567899999999999999999875  49999999999999999987 221   4579999999998887788999999


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhc----CCceeecCHHHHHHHHHHcCC
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI----SGSYTFLSEREIEDLCRACGL  213 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~Gf  213 (235)
                      +..+++|++++..+++++.++|+|||.+++. +..........+...+.......    ..+...++.+++.++++++||
T Consensus       110 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  188 (263)
T 2yqz_A          110 VVHLWHLVPDWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGL  188 (263)
T ss_dssp             EESCGGGCTTHHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred             ECCchhhcCCHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCC
Confidence            9999999999999999999999999999988 32211111001222222222111    113456789999999999999


Q ss_pred             ceeEEEe
Q 026688          214 VDFKCTR  220 (235)
Q Consensus       214 ~~~~~~~  220 (235)
                      +++....
T Consensus       189 ~~~~~~~  195 (263)
T 2yqz_A          189 KPRTREV  195 (263)
T ss_dssp             CCEEEEE
T ss_pred             CcceEEE
Confidence            9766543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.89  E-value=3.8e-22  Score=159.37  Aligned_cols=164  Identities=14%  Similarity=0.059  Sum_probs=127.8

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ...+..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++++...+.  ..++++...|+. .+.+. .||+|+
T Consensus       166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~-~~~p~-~~D~v~  240 (332)
T 3i53_A          166 DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL--SGRAQVVVGSFF-DPLPA-GAGGYV  240 (332)
T ss_dssp             CCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTT-SCCCC-SCSEEE
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc--CcCeEEecCCCC-CCCCC-CCcEEE
Confidence            334468999999999999999999998889999999 9999999999887654  458999999997 34444 899999


Q ss_pred             ecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCce
Q 026688          138 AGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  215 (235)
Q Consensus       138 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  215 (235)
                      +..++||++++  .+++++++++|+|||++++.+...+.. ....... +.. +  .....+.++.++|.++++++||++
T Consensus       241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~d-~~~-~--~~~~~~~~t~~e~~~ll~~aGf~~  315 (332)
T 3i53_A          241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HAGTGMD-LRM-L--TYFGGKERSLAELGELAAQAGLAV  315 (332)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----CCHHHH-HHH-H--HHHSCCCCCHHHHHHHHHHTTEEE
T ss_pred             EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-CccHHHH-HHH-H--hhCCCCCCCHHHHHHHHHHCCCEE
Confidence            99999999986  689999999999999999998876543 1111111 111 1  112345679999999999999999


Q ss_pred             eEEEeeCcEEEEEEec
Q 026688          216 FKCTRNRGFVMFTATK  231 (235)
Q Consensus       216 ~~~~~~~~~~~~~~~k  231 (235)
                      +++...+...++.+++
T Consensus       316 ~~~~~~~~~~vie~r~  331 (332)
T 3i53_A          316 RAAHPISYVSIVEMTA  331 (332)
T ss_dssp             EEEEECSSSEEEEEEE
T ss_pred             EEEEECCCcEEEEEee
Confidence            9887665555555553

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.89  E-value=1.8e-22  Score=150.26  Aligned_cols=156  Identities=13%  Similarity=0.124  Sum_probs=116.5

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCC---------CCCCCee
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---------FPKENFL  117 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---------~~~~~~~  117 (235)
                      +..+..++..+...++.+|||+|||+|..+..+++++.  +|+|+|+|+.|++.|+++......         ....+++
T Consensus         8 ~~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~   85 (203)
T 1pjz_A            8 NKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   85 (203)
T ss_dssp             THHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             CHHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccE
Confidence            44444445555555678999999999999999999875  999999999999999987642100         0034799


Q ss_pred             EEecccccCCCCC-CceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCC
Q 026688          118 LVRADISRLPFAS-SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG  194 (235)
Q Consensus       118 ~~~~d~~~~~~~~-~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (235)
                      +.++|+.+++++. ++||+|++..+++|++..  .++++++.++|||||.+++........               ...+
T Consensus        86 ~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~---------------~~~~  150 (203)
T 1pjz_A           86 IWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA---------------LLEG  150 (203)
T ss_dssp             EEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS---------------SSSS
T ss_pred             EEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc---------------ccCC
Confidence            9999999987654 789999999999998754  468999999999999966555433210               0111


Q ss_pred             ceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          195 SYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       195 ~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      ....++.+++.+++.+ ||++.....
T Consensus       151 ~~~~~~~~el~~~~~~-gf~i~~~~~  175 (203)
T 1pjz_A          151 PPFSVPQTWLHRVMSG-NWEVTKVGG  175 (203)
T ss_dssp             CCCCCCHHHHHHTSCS-SEEEEEEEE
T ss_pred             CCCCCCHHHHHHHhcC-CcEEEEecc
Confidence            2223689999999998 998766653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.89  E-value=1.2e-22  Score=147.04  Aligned_cols=149  Identities=13%  Similarity=0.149  Sum_probs=121.6

Q ss_pred             hhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688           55 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  134 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  134 (235)
                      +.+...++.+|||+|||+|.++..+++.+.  +++++|+++.+++.++++        ..++++...|   .+++.++||
T Consensus        11 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~v~~~~~d---~~~~~~~~D   77 (170)
T 3i9f_A           11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK--------FDSVITLSDP---KEIPDNSVD   77 (170)
T ss_dssp             HHHHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH--------CTTSEEESSG---GGSCTTCEE
T ss_pred             HhcCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh--------CCCcEEEeCC---CCCCCCceE
Confidence            334445578999999999999999999874  999999999999999987        2378899998   456678999


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCc
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  214 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  214 (235)
                      +|++..+++|++++..+++++.++|+|||.+++.++........              ......++.+++.++++  ||+
T Consensus        78 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~--Gf~  141 (170)
T 3i9f_A           78 FILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIG--------------PPLSIRMDEKDYMGWFS--NFV  141 (170)
T ss_dssp             EEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS--------------SCGGGCCCHHHHHHHTT--TEE
T ss_pred             EEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccC--------------chHhhhcCHHHHHHHHh--CcE
Confidence            99999999999999999999999999999999998876432111              12234589999999999  999


Q ss_pred             eeEEEeeC-cEEEEEEecC
Q 026688          215 DFKCTRNR-GFVMFTATKP  232 (235)
Q Consensus       215 ~~~~~~~~-~~~~~~~~k~  232 (235)
                      +++....+ ....++++++
T Consensus       142 ~~~~~~~~~~~~~l~~~~~  160 (170)
T 3i9f_A          142 VEKRFNPTPYHFGLVLKRK  160 (170)
T ss_dssp             EEEEECSSTTEEEEEEEEC
T ss_pred             EEEccCCCCceEEEEEecC
Confidence            99887666 4555666554

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.89  E-value=2.3e-21  Score=148.09  Aligned_cols=163  Identities=23%  Similarity=0.267  Sum_probs=123.6

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      +.+...+...++.+|||+|||+|..+..+++.+. .+++++|+|+.+++.++++...      .++.+.+.|+.+.+++.
T Consensus        33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~  105 (243)
T 3bkw_A           33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD------TGITYERADLDKLHLPQ  105 (243)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGGCCCCT
T ss_pred             HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhhccCCC
Confidence            4566667766789999999999999999998853 3899999999999999987542      36899999999888777


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccc-------------hhHHHH-----HHhHhhc
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-------------PFSRLL-----RQNMMQI  192 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~-------------~~~~~~-----~~~~~~~  192 (235)
                      ++||+|++..+++|++++..+++++.++|+|||.+++.+++........             +....+     ...+...
T Consensus       106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (243)
T 3bkw_A          106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK  185 (243)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH
T ss_pred             CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccC
Confidence            8999999999999999999999999999999999999886532100000             000000     0000011


Q ss_pred             CCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          193 SGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      ..+...++.+++.++|+++||+++.+..
T Consensus       186 ~~~~~~~t~~~~~~~l~~aGF~~~~~~~  213 (243)
T 3bkw_A          186 GVVKHHRTVGTTLNALIRSGFAIEHVEE  213 (243)
T ss_dssp             SCCEEECCHHHHHHHHHHTTCEEEEEEE
T ss_pred             ceEEEeccHHHHHHHHHHcCCEeeeecc
Confidence            2234457899999999999999888763

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.89  E-value=1.4e-21  Score=158.57  Aligned_cols=176  Identities=15%  Similarity=0.110  Sum_probs=131.6

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      +.+.+.+...++.+|||+|||+|.++..+++.++..+++++|+ +.+++.+++++...+.  ..++++..+|+.+ +++.
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~~  247 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL--ADRVTVAEGDFFK-PLPV  247 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTS-CCSC
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC--CCceEEEeCCCCC-cCCC
Confidence            3455555555678999999999999999999988889999999 9999999999877653  3479999999976 3443


Q ss_pred             CceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEe--ccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688          131 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTY--IVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  206 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (235)
                       .||+|++..++||++++.  .+++++.++|+|||.+++.+.  .....  ..+....+.............++.++|.+
T Consensus       248 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (374)
T 1qzz_A          248 -TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDG--ADRFFSTLLDLRMLTFMGGRVRTRDEVVD  324 (374)
T ss_dssp             -CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred             -CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCC--CCcchhhhcchHHHHhCCCcCCCHHHHHH
Confidence             499999999999998875  899999999999999999887  43211  11111111111111111245689999999


Q ss_pred             HHHHcCCceeEEEeeCc-E-----EEEEEecCC
Q 026688          207 LCRACGLVDFKCTRNRG-F-----VMFTATKPS  233 (235)
Q Consensus       207 ~l~~~Gf~~~~~~~~~~-~-----~~~~~~k~~  233 (235)
                      +++++||+++++...+. .     .++.++|++
T Consensus       325 ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~  357 (374)
T 1qzz_A          325 LAGSAGLALASERTSGSTTLPFDFSILEFTAVS  357 (374)
T ss_dssp             HHHTTTEEEEEEEEECCSSCSSCEEEEEEEECC
T ss_pred             HHHHCCCceEEEEECCCCcccCCcEEEEEEECc
Confidence            99999999988876553 3     677777764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.89  E-value=1.4e-22  Score=156.78  Aligned_cols=165  Identities=16%  Similarity=0.254  Sum_probs=118.3

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC-C------------------------
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-P------------------------  112 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~------------------------  112 (235)
                      ...++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.|++++...... .                        
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  130 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence            344578999999999988877766652 37999999999999999876543100 0                        


Q ss_pred             -CCCee-EEecccccC-CC---CCCceeEEEeccccccc-C---ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhH
Q 026688          113 -KENFL-LVRADISRL-PF---ASSSIDAVHAGAAIHCW-S---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS  182 (235)
Q Consensus       113 -~~~~~-~~~~d~~~~-~~---~~~~~D~i~~~~~l~~~-~---~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~  182 (235)
                       ..++. +..+|+.+. |+   ..++||+|+++.++||+ +   +...+++++.++|||||.+++...........    
T Consensus       131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~----  206 (263)
T 2a14_A          131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV----  206 (263)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE----
T ss_pred             HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcccee----
Confidence             00233 888998773 32   24689999999999986 3   33588999999999999999997654321000    


Q ss_pred             HHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEee-----------CcEEEEEEecCCC
Q 026688          183 RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-----------RGFVMFTATKPSQ  234 (235)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-----------~~~~~~~~~k~~~  234 (235)
                             .........++.+++.++|+++||+++.....           +...+++|+|++.
T Consensus       207 -------g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~  262 (263)
T 2a14_A          207 -------GKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKPG  262 (263)
T ss_dssp             -------TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC-
T ss_pred             -------CCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecCC
Confidence                   00001123579999999999999998887653           2667889998763

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.89  E-value=7.9e-22  Score=150.56  Aligned_cols=155  Identities=15%  Similarity=0.157  Sum_probs=122.7

Q ss_pred             HHHHHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ....+.+...+. ..++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++           +++...|+.+
T Consensus        26 ~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~-----------~~~~~~d~~~   92 (240)
T 3dli_A           26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEGK-----------FNVVKSDAIE   92 (240)
T ss_dssp             HHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHTT-----------SEEECSCHHH
T ss_pred             HHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHhh-----------cceeeccHHH
Confidence            344455555544 23468999999999999999999865  899999999999998763           6788889877


Q ss_pred             C--CCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688          126 L--PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE  201 (235)
Q Consensus       126 ~--~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (235)
                      .  +++.++||+|++..+++|++++  ..+++++.++|+|||.+++.+++....   .    .+.. +.....+...++.
T Consensus        93 ~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~----~~~~-~~~~~~~~~~~~~  164 (240)
T 3dli_A           93 YLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---Y----SLIN-FYIDPTHKKPVHP  164 (240)
T ss_dssp             HHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---H----HHHH-HTTSTTCCSCCCH
T ss_pred             HhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---H----HHHH-HhcCccccccCCH
Confidence            4  6777899999999999999966  799999999999999999998875321   1    1111 1123356678899


Q ss_pred             HHHHHHHHHcCCceeEEEeeC
Q 026688          202 REIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                      +++.++++++||+++......
T Consensus       165 ~~l~~~l~~aGf~~~~~~~~~  185 (240)
T 3dli_A          165 ETLKFILEYLGFRDVKIEFFE  185 (240)
T ss_dssp             HHHHHHHHHHTCEEEEEEEEC
T ss_pred             HHHHHHHHHCCCeEEEEEEec
Confidence            999999999999988887554

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.89  E-value=6.1e-22  Score=155.47  Aligned_cols=153  Identities=11%  Similarity=0.059  Sum_probs=110.6

Q ss_pred             CCCCeEEEecCCCchHHHH----HHHcCCCceE--EEEeCCHHHHHHHHHHhhhcCCCCCCCe--eEEecccccCC----
Q 026688           60 VLGGNIIDASCGSGLFSRI----FAKSGLFSLV--VALDYSENMLKQCYEFVQQESNFPKENF--LLVRADISRLP----  127 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~----l~~~~~~~~v--~~~D~s~~~~~~a~~~~~~~~~~~~~~~--~~~~~d~~~~~----  127 (235)
                      .++.+|||||||+|.++..    ++..++.+.+  +++|+|+.|++.|++++.....  ..++  .+...+..+.+    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN--LENVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS--CTTEEEEEECSCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC--CCcceEEEEecchhhhhhhhc
Confidence            4567999999999976653    3444455544  9999999999999998865321  2344  44455555432    


Q ss_pred             --CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhc--CCceeecCHHH
Q 026688          128 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI--SGSYTFLSERE  203 (235)
Q Consensus       128 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  203 (235)
                        ++.++||+|++..+++|++++.+++++++++|||||.+++.....+     ..+...+...+...  ..+..+++.++
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS-----SGWDKLWKKYGSRFPQDDLCQYITSDD  203 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT-----SHHHHHHHHHGGGSCCCTTCCCCCHHH
T ss_pred             cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCC-----ccHHHHHHHHHHhccCCCcccCCCHHH
Confidence              4568899999999999999999999999999999999999876532     12222122221111  12456789999


Q ss_pred             HHHHHHHcCCceeEEE
Q 026688          204 IEDLCRACGLVDFKCT  219 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~  219 (235)
                      +.++|+++||+++...
T Consensus       204 ~~~~l~~aGf~~~~~~  219 (292)
T 2aot_A          204 LTQMLDNLGLKYECYD  219 (292)
T ss_dssp             HHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHCCCceEEEE
Confidence            9999999999876643

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.89  E-value=1.8e-21  Score=144.21  Aligned_cols=147  Identities=19%  Similarity=0.217  Sum_probs=117.7

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +++++|+|+.+++.+++++...+   ..++++...|+.+.++ .+
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~   96 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIEN---LDNLHTRVVDLNNLTF-DR   96 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECCGGGCCC-CC
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhCC---CCCcEEEEcchhhCCC-CC
Confidence            444555555678999999999999999998854  99999999999999999887654   3469999999998876 68


Q ss_pred             ceeEEEecccccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH
Q 026688          132 SIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  209 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  209 (235)
                      +||+|++..+++|++  +...+++++.++|+|||.+++.+.........             .......++.+++.++++
T Consensus        97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~  163 (199)
T 2xvm_A           97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC-------------TVGFPFAFKEGELRRYYE  163 (199)
T ss_dssp             CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC-------------CSCCSCCBCTTHHHHHTT
T ss_pred             CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC-------------CCCCCCccCHHHHHHHhc
Confidence            899999999999997  66799999999999999988877654321100             112334678999999998


Q ss_pred             HcCCceeEEE
Q 026688          210 ACGLVDFKCT  219 (235)
Q Consensus       210 ~~Gf~~~~~~  219 (235)
                      +  |+++...
T Consensus       164 ~--f~~~~~~  171 (199)
T 2xvm_A          164 G--WERVKYN  171 (199)
T ss_dssp             T--SEEEEEE
T ss_pred             C--CeEEEec
Confidence            6  8877764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.88  E-value=1e-21  Score=158.62  Aligned_cols=168  Identities=12%  Similarity=0.124  Sum_probs=128.6

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--CCCCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~i~~  138 (235)
                      ...+|||||||+|.++..+++.+|..+++++|+ +.+++.|++++...+.  ..++++..+|+.+.  |++ ++||+|++
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~p-~~~D~v~~  254 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG--SERIHGHGANLLDRDVPFP-TGFDAVWM  254 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT--GGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc--ccceEEEEccccccCCCCC-CCcCEEEE
Confidence            468999999999999999999998889999999 9999999999876543  35799999999875  455 78999999


Q ss_pred             cccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccch-hHHH-HHHhH-hhcCCceeecCHHHHHHHHHHcCC
Q 026688          139 GAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIP-FSRL-LRQNM-MQISGSYTFLSEREIEDLCRACGL  213 (235)
Q Consensus       139 ~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf  213 (235)
                      ..++|++++++  +++++++++|+|||.+++.+...+....... +... ....+ .......+.++.++|.++|+++||
T Consensus       255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf  334 (363)
T 3dp7_A          255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL  334 (363)
T ss_dssp             ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE
T ss_pred             echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCC
Confidence            99999998774  7899999999999999999876643221111 1011 11111 122334567899999999999999


Q ss_pred             ceeEEEe-eC-cEEEEEEecC
Q 026688          214 VDFKCTR-NR-GFVMFTATKP  232 (235)
Q Consensus       214 ~~~~~~~-~~-~~~~~~~~k~  232 (235)
                      +++++.. .+ ...++.+++.
T Consensus       335 ~~v~~~~~~g~~~svi~~~~~  355 (363)
T 3dp7_A          335 EVEEIQDNIGLGHSILQCRLK  355 (363)
T ss_dssp             EESCCCCCBTTTBEEEEEEEC
T ss_pred             eEEEEEeCCCCCceEEEEeec
Confidence            9988863 33 3555655554

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.88  E-value=8e-22  Score=150.62  Aligned_cols=145  Identities=16%  Similarity=0.155  Sum_probs=118.9

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.+++++...+   ..++.+.+.|+.+.+++.++||+|++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC---CceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence            47899999999999999998876 4599999999999999999886643   2368899999988877777899999999


Q ss_pred             cccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEE
Q 026688          141 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  218 (235)
Q Consensus       141 ~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  218 (235)
                      +++|++++.  .+++++.++|+|||.+++.++.....    ..       + .........+.+++.++++++||+++..
T Consensus       155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~-------~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~  222 (241)
T 2ex4_A          155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG----VI-------L-DDVDSSVCRDLDVVRRIICSAGLSLLAE  222 (241)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS----EE-------E-ETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc----ce-------e-cccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence            999998865  89999999999999999988765420    00       0 0112334568999999999999999888


Q ss_pred             Eee
Q 026688          219 TRN  221 (235)
Q Consensus       219 ~~~  221 (235)
                      ...
T Consensus       223 ~~~  225 (241)
T 2ex4_A          223 ERQ  225 (241)
T ss_dssp             EEC
T ss_pred             eec
Confidence            643

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.88  E-value=1.6e-21  Score=157.48  Aligned_cols=176  Identities=13%  Similarity=0.150  Sum_probs=132.2

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      .+.+.+...++.+|||+|||+|.++..+++.++..+++++|+ +.+++.+++++...+.  ..++++..+|+.+ +++. 
T Consensus       174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~~-  248 (360)
T 1tw3_A          174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL--SDRVDVVEGDFFE-PLPR-  248 (360)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC--TTTEEEEECCTTS-CCSS-
T ss_pred             HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC--CCceEEEeCCCCC-CCCC-
Confidence            344555555678999999999999999999988889999999 9999999999877654  3479999999976 3333 


Q ss_pred             ceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEec-cCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          132 SIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYI-VDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      .||+|++..++||++++  .++++++.++|+|||.+++.+.. .... ....+ ................++.++|.+++
T Consensus       249 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~t~~e~~~ll  326 (360)
T 1tw3_A          249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHEN-SFNEQ-FTELDLRMLVFLGGALRTREKWDGLA  326 (360)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGG-CCSHH-HHHHHHHHHHHHSCCCCBHHHHHHHH
T ss_pred             CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCC-CCcch-hhhccHHHhhhcCCcCCCHHHHHHHH
Confidence            49999999999999877  48999999999999999999876 3211 11111 11111111111124568999999999


Q ss_pred             HHcCCceeEEEeeCc------EEEEEEecCCC
Q 026688          209 RACGLVDFKCTRNRG------FVMFTATKPSQ  234 (235)
Q Consensus       209 ~~~Gf~~~~~~~~~~------~~~~~~~k~~~  234 (235)
                      +++||+++++...+.      ..++.++|+..
T Consensus       327 ~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~~  358 (360)
T 1tw3_A          327 ASAGLVVEEVRQLPSPTIPYDLSLLVLAPAAT  358 (360)
T ss_dssp             HHTTEEEEEEEEEECSSSSCEEEEEEEEEC--
T ss_pred             HHCCCeEEEEEeCCCCcccCccEEEEEEeCCC
Confidence            999999988875443      67888888754

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.88  E-value=1.6e-21  Score=155.92  Aligned_cols=175  Identities=15%  Similarity=0.091  Sum_probs=132.8

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ....+.+.+...+ .+|||+|||+|..+..+++..|..+++++|+ +.+++.+++++...+.  ..++++..+|+.+ ++
T Consensus       156 ~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~  230 (334)
T 2ip2_A          156 AFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA--GERVSLVGGDMLQ-EV  230 (334)
T ss_dssp             HHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH--TTSEEEEESCTTT-CC
T ss_pred             HHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC--CCcEEEecCCCCC-CC
Confidence            3445555555555 8999999999999999999988889999999 9999999998765432  3479999999977 55


Q ss_pred             CCCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  206 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (235)
                      + +.||+|++..++||+++..  ++++++.++|+|||.+++.+...+....  +..................++.++|.+
T Consensus       231 ~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~e~~~  307 (334)
T 2ip2_A          231 P-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP--SPMSVLWDVHLFMACAGRHRTTEEVVD  307 (334)
T ss_dssp             C-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC--CHHHHHHHHHHHHHHSCCCCBHHHHHH
T ss_pred             C-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--cchhHHhhhHhHhhCCCcCCCHHHHHH
Confidence            4 6799999999999998776  8999999999999999999876543211  221221111111111234578999999


Q ss_pred             HHHHcCCceeEEEeeC-cEEEEEEec
Q 026688          207 LCRACGLVDFKCTRNR-GFVMFTATK  231 (235)
Q Consensus       207 ~l~~~Gf~~~~~~~~~-~~~~~~~~k  231 (235)
                      +++++||+++++...+ ...++.++|
T Consensus       308 ll~~aGf~~~~~~~~~~~~~~i~~~~  333 (334)
T 2ip2_A          308 LLGRGGFAVERIVDLPMETRMIVAAR  333 (334)
T ss_dssp             HHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred             HHHHCCCceeEEEECCCCCEEEEEEe
Confidence            9999999998887654 456777765

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.88  E-value=2.1e-21  Score=151.78  Aligned_cols=171  Identities=13%  Similarity=0.138  Sum_probs=128.0

Q ss_pred             HHHHHHHHhhc-CCCCCCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           47 EKEFELMKGYL-KPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        47 ~~~~~~i~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      ......+.+.+ ...++.+|||+|||+|.++..+++..+. .+|+|+|+|+.+++.+++++...+    .++++.+.|+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~   82 (284)
T 3gu3_A            7 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDAT   82 (284)
T ss_dssp             HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS----SEEEEEESCTT
T ss_pred             hHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC----CceEEEEcchh
Confidence            44455555544 4556899999999999999999998763 799999999999999999887643    37999999999


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc-----CC--Ccccc-hh--HHHHHHhHh--hc
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV-----DG--PFNLI-PF--SRLLRQNMM--QI  192 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~-----~~--~~~~~-~~--~~~~~~~~~--~~  192 (235)
                      +.+++ ++||+|++..+++|++++..+++++.++|+|||++++.++..     ..  ..... ..  ...+...+.  ..
T Consensus        83 ~~~~~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (284)
T 3gu3_A           83 EIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQ  161 (284)
T ss_dssp             TCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHH
T ss_pred             hcCcC-CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhh
Confidence            88764 689999999999999999999999999999999999988761     10  00000 00  111111111  01


Q ss_pred             CCceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688          193 SGSYTFLSEREIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                      .....+.+..++.++|+++||+.+......
T Consensus       162 ~~~~~~~~~~~l~~~l~~aGF~~v~~~~~~  191 (284)
T 3gu3_A          162 RNGKDGNIGMKIPIYLSELGVKNIECRVSD  191 (284)
T ss_dssp             HTCCCTTGGGTHHHHHHHTTCEEEEEEECC
T ss_pred             hhcccccHHHHHHHHHHHcCCCeEEEEEcC
Confidence            122345567889999999999988775443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.88  E-value=2e-21  Score=151.18  Aligned_cols=171  Identities=12%  Similarity=0.101  Sum_probs=129.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHH------HHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSEN------MLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~------~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      ....+++.+...++.+|||||||+|.++..+++. ++..+|+|+|+|+.      +++.+++++...+.  ..++++...
T Consensus        31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~--~~~v~~~~~  108 (275)
T 3bkx_A           31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL--GDRLTVHFN  108 (275)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT--GGGEEEECS
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC--CCceEEEEC
Confidence            3456666667777899999999999999999988 46679999999997      99999999876543  357999999


Q ss_pred             c---cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccc--hhHHHHHH-hHh-----
Q 026688          122 D---ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI--PFSRLLRQ-NMM-----  190 (235)
Q Consensus       122 d---~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~--~~~~~~~~-~~~-----  190 (235)
                      |   ....+++.++||+|++..+++|++++..+++.+.++++|||.+++.++.........  .....+.. .+.     
T Consensus       109 d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (275)
T 3bkx_A          109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPS  188 (275)
T ss_dssp             CCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCC
T ss_pred             ChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccc
Confidence            8   344566678999999999999999998888888888888999999998765321111  11111111 110     


Q ss_pred             hcCCceeecCHHHHHHHHHHcCCceeEEEee
Q 026688          191 QISGSYTFLSEREIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       191 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  221 (235)
                      .......+++.+++.++++++||+++.....
T Consensus       189 ~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          189 DVANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             TTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             ccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence            0123346789999999999999998776543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.88  E-value=6.1e-22  Score=153.05  Aligned_cols=158  Identities=20%  Similarity=0.206  Sum_probs=124.7

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.++++         .++++.+.|+.+
T Consensus        19 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~---------~~~~~~~~d~~~   87 (261)
T 3ege_A           19 DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG--LFVYAVEPSIVMRQQAVVH---------PQVEWFTGYAEN   87 (261)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT--CEEEEECSCHHHHHSSCCC---------TTEEEECCCTTS
T ss_pred             cHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC--CEEEEEeCCHHHHHHHHhc---------cCCEEEECchhh
Confidence            45677788888877778999999999999999999854  5999999999999877653         278999999999


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccc--hhHHHHHHhHhhcCCceeecCHHH
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI--PFSRLLRQNMMQISGSYTFLSERE  203 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  203 (235)
                      .+++.++||+|++..+++|++++..+++++.++|+ ||++++.++.........  ........     ..+..+.+.++
T Consensus        88 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  161 (261)
T 3ege_A           88 LALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWE-----DALRFLPLDEQ  161 (261)
T ss_dssp             CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHH-----HHHTSCCHHHH
T ss_pred             CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhh-----hhhhhCCCHHH
Confidence            88888999999999999999999999999999999 999999888654321100  11111111     11234567788


Q ss_pred             HHHHHHHcCCceeEEEee
Q 026688          204 IEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~~~  221 (235)
                      +. +|+++||.++.+...
T Consensus       162 ~~-~l~~aGF~~v~~~~~  178 (261)
T 3ege_A          162 IN-LLQENTKRRVEAIPF  178 (261)
T ss_dssp             HH-HHHHHHCSEEEEEEC
T ss_pred             HH-HHHHcCCCceeEEEe
Confidence            99 999999998877654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.88  E-value=7.6e-22  Score=152.66  Aligned_cols=165  Identities=15%  Similarity=0.267  Sum_probs=123.3

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC--------------C-----------
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--------------P-----------  112 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--------------~-----------  112 (235)
                      ...++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.+++++...+..              .           
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK  131 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence            334578999999999999999888765 58999999999999999887542100              0           


Q ss_pred             -CCCe-eEEecccccCC-CCC---CceeEEEeccccc----ccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhH
Q 026688          113 -KENF-LLVRADISRLP-FAS---SSIDAVHAGAAIH----CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS  182 (235)
Q Consensus       113 -~~~~-~~~~~d~~~~~-~~~---~~~D~i~~~~~l~----~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~  182 (235)
                       ..++ .+...|+.+.+ ++.   ++||+|++..+++    +.+++..+++++.++|+|||.+++.+.........    
T Consensus       132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~----  207 (265)
T 2i62_A          132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMI----  207 (265)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE----
T ss_pred             hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEc----
Confidence             0026 89999998753 244   7899999999999    55566799999999999999999988654321000    


Q ss_pred             HHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeC-----------cEEEEEEecCCC
Q 026688          183 RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-----------GFVMFTATKPSQ  234 (235)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-----------~~~~~~~~k~~~  234 (235)
                             .........++.+++.++|+++||+++......           ...+++++|++.
T Consensus       208 -------~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~  263 (265)
T 2i62_A          208 -------GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGR  263 (265)
T ss_dssp             -------TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC-
T ss_pred             -------CCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccccc
Confidence                   001112345788999999999999998887544           467888999865

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.88  E-value=4.6e-21  Score=146.41  Aligned_cols=176  Identities=17%  Similarity=0.184  Sum_probs=128.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ....+.+...+..  +.+|||+|||+|.++..+++.   .+++++|+|+.+++.|+++....+    .++++.+.|+.+.
T Consensus        21 ~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~   91 (243)
T 3d2l_A           21 PEWVAWVLEQVEP--GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN----RHVDFWVQDMREL   91 (243)
T ss_dssp             HHHHHHHHHHSCT--TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCGGGC
T ss_pred             HHHHHHHHHHcCC--CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC----CceEEEEcChhhc
Confidence            3455666666654  589999999999999999887   499999999999999999887642    4689999999887


Q ss_pred             CCCCCceeEEEecc-cccccCC---hHHHHHHHHHhccCCcEEEEEEeccCCCccc---ch-----------hHHHH---
Q 026688          127 PFASSSIDAVHAGA-AIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNL---IP-----------FSRLL---  185 (235)
Q Consensus       127 ~~~~~~~D~i~~~~-~l~~~~~---~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~---~~-----------~~~~~---  185 (235)
                      +++ ++||+|++.. +++|+.+   ...+++++.++|+|||.+++..++.......   ..           +....   
T Consensus        92 ~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (243)
T 3d2l_A           92 ELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEE  170 (243)
T ss_dssp             CCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSS
T ss_pred             CCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCcc
Confidence            765 7899999986 8999844   4588999999999999999876543210000   00           00000   


Q ss_pred             HH-------hHh--h--------cCCceeecCHHHHHHHHHHcCCceeEEEe---------eCcEEEEEEecC
Q 026688          186 RQ-------NMM--Q--------ISGSYTFLSEREIEDLCRACGLVDFKCTR---------NRGFVMFTATKP  232 (235)
Q Consensus       186 ~~-------~~~--~--------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~---------~~~~~~~~~~k~  232 (235)
                      ..       .+.  .        ...+.+.++.+++.++|+++||+++.+..         .....+++++|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~  243 (243)
T 3d2l_A          171 PLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI  243 (243)
T ss_dssp             TTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred             ccEEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence            00       000  0        01123578999999999999999988863         235678889885

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.88  E-value=1.3e-21  Score=154.08  Aligned_cols=173  Identities=16%  Similarity=0.175  Sum_probs=125.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+... +.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|++++...+.....++++.++|+.+
T Consensus        68 ~~~~~~~~~~~~~~~-~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  144 (299)
T 3g2m_A           68 GTSEAREFATRTGPV-SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA  144 (299)
T ss_dssp             CHHHHHHHHHHHCCC-CSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred             ccHHHHHHHHhhCCC-CCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence            456667777777654 45999999999999999999864  899999999999999999876421001479999999999


Q ss_pred             CCCCCCceeEEEec-ccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCccc-----chhHHHHHH---hHh----
Q 026688          126 LPFASSSIDAVHAG-AAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNL-----IPFSRLLRQ---NMM----  190 (235)
Q Consensus       126 ~~~~~~~~D~i~~~-~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~-----~~~~~~~~~---~~~----  190 (235)
                      +++ .++||+|++. .++++++.  ...+++++.++|+|||.|++.+++.......     ..+...-..   .+.    
T Consensus       145 ~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  223 (299)
T 3g2m_A          145 FAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLP  223 (299)
T ss_dssp             CCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEE
T ss_pred             CCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEec
Confidence            876 6889999976 55665553  3689999999999999999998876421000     000000000   000    


Q ss_pred             --------------------hcCCceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688          191 --------------------QISGSYTFLSEREIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       191 --------------------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                                          ....+.++++++++.++|+++||+++.+....
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~  275 (299)
T 3g2m_A          224 AEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA  275 (299)
T ss_dssp             EEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             cccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence                                01123557899999999999999999887543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.88  E-value=7.5e-21  Score=143.16  Aligned_cols=137  Identities=21%  Similarity=0.333  Sum_probs=111.6

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +.+|||+|||+|.++..+++.      +++|+++.+++.++++          ++.+.+.|+.+.+++.++||+|++..+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----------CCEEEEcccccCCCCCCCeeEEEEcch
Confidence            789999999999999988653      9999999999999874          477899999888877789999999999


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH--hhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          142 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--MQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       142 l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      ++|++++..+++++.++|+|||.+++.++....     ++...+....  .....+..+++.+++.++|+++||+++.+.
T Consensus       112 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~  186 (219)
T 1vlm_A          112 ICFVDDPERALKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV  186 (219)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             HhhccCHHHHHHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence            999999999999999999999999999886532     1111111110  112234567899999999999999988776

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.87  E-value=2.2e-21  Score=157.73  Aligned_cols=156  Identities=20%  Similarity=0.218  Sum_probs=121.4

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhc-----CCCCCCCeeEEecccccC------C
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQE-----SNFPKENFLLVRADISRL------P  127 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~d~~~~------~  127 (235)
                      .++.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.+++++...     +.....++++..+|+.++      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            457899999999999999998874 6679999999999999999887543     201135899999999886      7


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  207 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (235)
                      ++.++||+|+++.+++|++++..+++++.++|+|||.+++.++......  ..........+  .......++.+++.++
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~l  237 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRL--SEAAQQDPILY--GECLGGALYLEDFRRL  237 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCC--CHHHHHCHHHH--HTTCTTCCBHHHHHHH
T ss_pred             CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecccccc--CHhHhhhHHHh--hcccccCCCHHHHHHH
Confidence            7788999999999999999999999999999999999999987664311  11111111111  1122345788999999


Q ss_pred             HHHcCCceeEEE
Q 026688          208 CRACGLVDFKCT  219 (235)
Q Consensus       208 l~~~Gf~~~~~~  219 (235)
                      |+++||+++++.
T Consensus       238 l~~aGF~~v~~~  249 (383)
T 4fsd_A          238 VAEAGFRDVRLV  249 (383)
T ss_dssp             HHHTTCCCEEEE
T ss_pred             HHHCCCceEEEE
Confidence            999999877654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.87  E-value=6e-21  Score=151.55  Aligned_cols=166  Identities=12%  Similarity=0.132  Sum_probs=126.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++....+.  ..++++...|+.+.+ 
T Consensus        78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~-  153 (318)
T 2fk8_A           78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDT--NRSRQVLLQGWEDFA-  153 (318)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCC--SSCEEEEESCGGGCC-
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECChHHCC-
Confidence            44566777777778999999999999999999873 24999999999999999999877654  346999999998764 


Q ss_pred             CCCceeEEEeccccccc--CChHHHHHHHHHhccCCcEEEEEEeccCCCcccc----hh---HHHHHHhHh-hcCCceee
Q 026688          129 ASSSIDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI----PF---SRLLRQNMM-QISGSYTF  198 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~----~~---~~~~~~~~~-~~~~~~~~  198 (235)
                        ++||+|++..+++|+  +++..+++++.++|+|||.+++.++.........    +.   .......+. ........
T Consensus       154 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (318)
T 2fk8_A          154 --EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL  231 (318)
T ss_dssp             --CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred             --CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcC
Confidence              789999999999999  5668999999999999999999998764311100    00   000111111 11122355


Q ss_pred             cCHHHHHHHHHHcCCceeEEEe
Q 026688          199 LSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      .+.+++.++++++||+++....
T Consensus       232 ~s~~~~~~~l~~aGf~~~~~~~  253 (318)
T 2fk8_A          232 PSTEMMVEHGEKAGFTVPEPLS  253 (318)
T ss_dssp             CCHHHHHHHHHHTTCBCCCCEE
T ss_pred             CCHHHHHHHHHhCCCEEEEEEe
Confidence            7999999999999999877654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.87  E-value=5.9e-22  Score=149.71  Aligned_cols=169  Identities=15%  Similarity=0.143  Sum_probs=123.8

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC---C
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---P  127 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~  127 (235)
                      ..+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++         .++.+...|+.+.   +
T Consensus        42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~  110 (227)
T 3e8s_A           42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAK  110 (227)
T ss_dssp             HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTC
T ss_pred             HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHh---------cccccchhhHHhhcccc
Confidence            4455555545579999999999999999998854  999999999999999885         2466788888765   4


Q ss_pred             CC-CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH-hHhh-----cCCceeecC
Q 026688          128 FA-SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ-NMMQ-----ISGSYTFLS  200 (235)
Q Consensus       128 ~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~  200 (235)
                      .. ..+||+|++..+++ ..++..+++++.++|+|||.+++.++........ .+...+.. .+..     ......+++
T Consensus       111 ~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (227)
T 3e8s_A          111 VPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADG-DYQDGWREESFAGFAGDWQPMPWYFRT  188 (227)
T ss_dssp             SCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTT-CCSCEEEEECCTTSSSCCCCEEEEECC
T ss_pred             cccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCcc-ccccccchhhhhccccCcccceEEEec
Confidence            33 34599999999999 7888999999999999999999998876432110 00000000 0000     112345679


Q ss_pred             HHHHHHHHHHcCCceeEEEee-------CcEEEEEEecC
Q 026688          201 EREIEDLCRACGLVDFKCTRN-------RGFVMFTATKP  232 (235)
Q Consensus       201 ~~~~~~~l~~~Gf~~~~~~~~-------~~~~~~~~~k~  232 (235)
                      .+++.++|+++||+++.+...       +...+++++||
T Consensus       189 ~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k~  227 (227)
T 3e8s_A          189 LASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAERH  227 (227)
T ss_dssp             HHHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred             HHHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence            999999999999999887641       23567777765

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.87  E-value=2.7e-21  Score=147.30  Aligned_cols=169  Identities=20%  Similarity=0.230  Sum_probs=123.1

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      +.+....  .++.+|||+|||+|.++..+++.++  +++++|+|+.+++.++++.        .++++.+.|+.+.++ .
T Consensus        32 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~   98 (239)
T 3bxo_A           32 DLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL--------PDATLHQGDMRDFRL-G   98 (239)
T ss_dssp             HHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC--------TTCEEEECCTTTCCC-S
T ss_pred             HHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC--------CCCEEEECCHHHccc-C
Confidence            3444434  3478999999999999999999876  9999999999999999863        368899999988776 5


Q ss_pred             CceeEEEec-ccccccCCh---HHHHHHHHHhccCCcEEEEEEeccCCCcccchh-----------H----------HHH
Q 026688          131 SSIDAVHAG-AAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-----------S----------RLL  185 (235)
Q Consensus       131 ~~~D~i~~~-~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~-----------~----------~~~  185 (235)
                      ++||+|+|. .+++|+.++   ..+++++.++|+|||.+++.++...........           .          ...
T Consensus        99 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (239)
T 3bxo_A           99 RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNAT  178 (239)
T ss_dssp             SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEE
T ss_pred             CCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEE
Confidence            789999964 589998654   589999999999999999987654321100000           0          000


Q ss_pred             --H-HhH-hh---------cCCceeecCHHHHHHHHHHcCCceeEEEe-eCcEEEEEEecC
Q 026688          186 --R-QNM-MQ---------ISGSYTFLSEREIEDLCRACGLVDFKCTR-NRGFVMFTATKP  232 (235)
Q Consensus       186 --~-~~~-~~---------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-~~~~~~~~~~k~  232 (235)
                        . ..+ ..         ...+.++++++++.++|+++||++..+.. .+...+++++||
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~  239 (239)
T 3bxo_A          179 RMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA  239 (239)
T ss_dssp             EEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred             EEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence              0 000 00         00124678999999999999998776654 346778888886

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.87  E-value=5.4e-21  Score=150.55  Aligned_cols=161  Identities=15%  Similarity=0.169  Sum_probs=120.9

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEeccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADI  123 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~  123 (235)
                      +....+.+..... .++.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.|++++... +.  ..++++.++|+
T Consensus        22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~v~~~~~d~   98 (299)
T 3g5t_A           22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT--YKNVSFKISSS   98 (299)
T ss_dssp             CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C--CTTEEEEECCT
T ss_pred             CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC--CCceEEEEcCH
Confidence            5666777777655 357899999999999999999764 6679999999999999999998765 22  45899999999


Q ss_pred             ccCCCCC------CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCC---CcccchhHHHHHHhHhhcCC
Q 026688          124 SRLPFAS------SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG---PFNLIPFSRLLRQNMMQISG  194 (235)
Q Consensus       124 ~~~~~~~------~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  194 (235)
                      .+++++.      ++||+|++..+++|+ ++..+++++.++|+|||.+++.......   ..........+..   ....
T Consensus        99 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~  174 (299)
T 3g5t_A           99 DDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPY---GKQG  174 (299)
T ss_dssp             TCCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHH---CTTT
T ss_pred             HhCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhcc---Cccc
Confidence            9887666      799999999999999 9999999999999999999995544321   1112222222211   1001


Q ss_pred             ceeec---CHHHHHHHHHHcCC
Q 026688          195 SYTFL---SEREIEDLCRACGL  213 (235)
Q Consensus       195 ~~~~~---~~~~~~~~l~~~Gf  213 (235)
                      ...++   ..+.+.+.+++.||
T Consensus       175 ~~~~w~~p~~~~~~~~l~~~gf  196 (299)
T 3g5t_A          175 LGPYWEQPGRSRLRNMLKDSHL  196 (299)
T ss_dssp             TGGGSCTTHHHHHHTTTTTCCC
T ss_pred             ccchhhchhhHHHHHhhhccCC
Confidence            11222   35667889999999

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.87  E-value=5e-21  Score=146.73  Aligned_cols=153  Identities=17%  Similarity=0.155  Sum_probs=114.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh---------cCC-----CCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------ESN-----FPKE  114 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~---------~~~-----~~~~  114 (235)
                      +.+.+.......++.+|||+|||+|..+..|++.+.  +|+|+|+|+.+++.|+++...         .+.     ....
T Consensus        56 l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (252)
T 2gb4_A           56 LKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG  133 (252)
T ss_dssp             HHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred             HHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC
Confidence            334444433334578999999999999999999876  999999999999999876531         000     0035


Q ss_pred             CeeEEecccccCCCCC-CceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh
Q 026688          115 NFLLVRADISRLPFAS-SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ  191 (235)
Q Consensus       115 ~~~~~~~d~~~~~~~~-~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~  191 (235)
                      ++++.++|+.+++++. ++||+|++..++++++..  ..+++++.++|+|||.+++.+.......               
T Consensus       134 ~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~---------------  198 (252)
T 2gb4_A          134 SISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK---------------  198 (252)
T ss_dssp             SEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS---------------
T ss_pred             ceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc---------------
Confidence            7999999999887653 789999999999998754  4789999999999999986655432100               


Q ss_pred             cCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          192 ISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      ..+....++++++.+++.. +|+++...
T Consensus       199 ~~g~~~~~~~~el~~~l~~-~f~v~~~~  225 (252)
T 2gb4_A          199 HAGPPFYVPSAELKRLFGT-KCSMQCLE  225 (252)
T ss_dssp             CCCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred             CCCCCCCCCHHHHHHHhhC-CeEEEEEe
Confidence            1112223789999999987 59876665

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.87  E-value=4.9e-21  Score=144.80  Aligned_cols=174  Identities=19%  Similarity=0.243  Sum_probs=123.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+.+.+..  +.+|||+|||+|.++..+++.++  +++++|+|+.+++.++++....+    .++++.+.|+.+.++
T Consensus        28 ~~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~   99 (227)
T 1ve3_A           28 LEPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSF   99 (227)
T ss_dssp             HHHHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCS
T ss_pred             HHHHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC----CCceEEECchhcCCC
Confidence            34455555544  78999999999999999999987  99999999999999999887642    478999999988777


Q ss_pred             CCCceeEEEeccc--ccccCChHHHHHHHHHhccCCcEEEEEEeccCCCccc--c--hhHHHHHHhH--hhcC-------
Q 026688          129 ASSSIDAVHAGAA--IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL--I--PFSRLLRQNM--MQIS-------  193 (235)
Q Consensus       129 ~~~~~D~i~~~~~--l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~--~--~~~~~~~~~~--~~~~-------  193 (235)
                      +.++||+|++..+  +++..++..+++++.++|+|||.+++.+++.......  .  .....++...  ....       
T Consensus       100 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (227)
T 1ve3_A          100 EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIE  179 (227)
T ss_dssp             CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEE
T ss_pred             CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEE
Confidence            7789999999998  5555567799999999999999999988763210000  0  0000000000  0000       


Q ss_pred             ---------CceeecCHHHHHHHHHHcCCceeEEEeeCcEEEEEEec
Q 026688          194 ---------GSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATK  231 (235)
Q Consensus       194 ---------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~k  231 (235)
                               .....+. .++.++|+++||..+++...+...+++..+
T Consensus       180 ~~~~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~  225 (227)
T 1ve3_A          180 FKSEQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYN  225 (227)
T ss_dssp             C-----CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEE
T ss_pred             eccchhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeC
Confidence                     0012222 478999999999999998877554444433

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.87  E-value=3.4e-22  Score=164.37  Aligned_cols=171  Identities=12%  Similarity=0.127  Sum_probs=126.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ....+.+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.|+++-..     .....+...+...+
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~~~~~~l  165 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREKGIR-----VRTDFFEKATADDV  165 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTTTCC-----EECSCCSHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHcCCC-----cceeeechhhHhhc
Confidence            34556667777766788999999999999999999866  999999999999999875110     11111223444445


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  206 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (235)
                      +++.++||+|++..+++|++++..+++++.++|+|||.+++..+....       .............+..+++.+++.+
T Consensus       166 ~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~l~~  238 (416)
T 4e2x_A          166 RRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGD-------IVAKTSFDQIFDEHFFLFSATSVQG  238 (416)
T ss_dssp             HHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHH-------HHHHTCGGGCSTTCCEECCHHHHHH
T ss_pred             ccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHH-------hhhhcchhhhhhhhhhcCCHHHHHH
Confidence            556789999999999999999999999999999999999998775321       0000111112245677899999999


Q ss_pred             HHHHcCCceeEEEeeC----cEEEEEEec
Q 026688          207 LCRACGLVDFKCTRNR----GFVMFTATK  231 (235)
Q Consensus       207 ~l~~~Gf~~~~~~~~~----~~~~~~~~k  231 (235)
                      +++++||+++.+...+    ...++.+++
T Consensus       239 ll~~aGf~~~~~~~~~~~~g~l~~~~~~~  267 (416)
T 4e2x_A          239 MAQRCGFELVDVQRLPVHGGEVRYTLARQ  267 (416)
T ss_dssp             HHHHTTEEEEEEEEECGGGSEEEEEEEET
T ss_pred             HHHHcCCEEEEEEEccCCCCEEEEEEEeC
Confidence            9999999998887633    344444444

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.87  E-value=2.4e-21  Score=148.80  Aligned_cols=114  Identities=28%  Similarity=0.360  Sum_probs=100.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      +.++.+.+.+....  ..+|||||||+|..+..+++.+.  +|+|+|+|+.|++.|++         ..++.+.++|+++
T Consensus        26 p~~l~~~l~~~~~~--~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~   92 (257)
T 4hg2_A           26 PRALFRWLGEVAPA--RGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALR---------HPRVTYAVAPAED   92 (257)
T ss_dssp             CHHHHHHHHHHSSC--SSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCC---------CTTEEEEECCTTC
T ss_pred             HHHHHHHHHHhcCC--CCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhh---------cCCceeehhhhhh
Confidence            57778888877664  57999999999999999999876  99999999999987754         4579999999999


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +++++++||+|++..++||+ ++.++++++.|+|||||.|++......
T Consensus        93 ~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A           93 TGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             CCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             hcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            99999999999999999776 578899999999999999999887654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.87  E-value=3.9e-21  Score=154.43  Aligned_cols=169  Identities=15%  Similarity=0.084  Sum_probs=123.6

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      .+.+.+...+..+|||||||+|..+..+++..|..+++++|+ +.++.  +++....+.  ..++++..+|+. .+.+  
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~--~~~v~~~~~d~~-~~~p--  246 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDV--AGRWKVVEGDFL-REVP--  246 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGG--TTSEEEEECCTT-TCCC--
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCC--CCCeEEEecCCC-CCCC--
Confidence            455555656678999999999999999999999889999999 44554  332222222  357999999997 3444  


Q ss_pred             ceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH
Q 026688          132 SIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  209 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  209 (235)
                      +||+|++..++||++++  .+++++++++|+|||++++.+...+...  .+..................++.++|.++++
T Consensus       247 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~--~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~  324 (348)
T 3lst_A          247 HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGN--DAHQSKEMDFMMLAARTGQERTAAELEPLFT  324 (348)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSS--SCCHHHHHHHHHHHTTSCCCCBHHHHHHHHH
T ss_pred             CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CcchhhhcChhhhhcCCCcCCCHHHHHHHHH
Confidence            89999999999999988  5999999999999999999987664421  1111222211111123455689999999999


Q ss_pred             HcCCceeEEEeeC-cEEEEEEe
Q 026688          210 ACGLVDFKCTRNR-GFVMFTAT  230 (235)
Q Consensus       210 ~~Gf~~~~~~~~~-~~~~~~~~  230 (235)
                      ++||+++++...+ ...++.++
T Consensus       325 ~aGf~~~~~~~~~~~~~vie~~  346 (348)
T 3lst_A          325 AAGLRLDRVVGTSSVMSIAVGV  346 (348)
T ss_dssp             HTTEEEEEEEECSSSCEEEEEE
T ss_pred             HCCCceEEEEECCCCcEEEEEE
Confidence            9999998887644 34455554

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.87  E-value=2.2e-20  Score=151.02  Aligned_cols=168  Identities=14%  Similarity=0.118  Sum_probs=125.6

Q ss_pred             HHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           52 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        52 ~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      .+.+.+. ..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++         ..++++..+|+.+ +++.
T Consensus       193 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p~  261 (368)
T 3reo_A          193 KILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFD-GVPK  261 (368)
T ss_dssp             HHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC
T ss_pred             HHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCC-CCCC
Confidence            3444444 44568999999999999999999999889999999 888877653         3479999999986 6554


Q ss_pred             CceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchh--HHHHHHhHh-hcCCceeecCHHHHH
Q 026688          131 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF--SRLLRQNMM-QISGSYTFLSEREIE  205 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~  205 (235)
                      .  |+|++..++||+++..  +++++++++|+|||++++.+...+........  ......... ........++.++|+
T Consensus       262 ~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~  339 (368)
T 3reo_A          262 G--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQ  339 (368)
T ss_dssp             C--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHH
T ss_pred             C--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHH
Confidence            3  9999999999998764  78999999999999999998876432211111  111111111 112245567999999


Q ss_pred             HHHHHcCCceeEEEee-CcEEEEEEecC
Q 026688          206 DLCRACGLVDFKCTRN-RGFVMFTATKP  232 (235)
Q Consensus       206 ~~l~~~Gf~~~~~~~~-~~~~~~~~~k~  232 (235)
                      ++++++||+++++... +...++.+.|+
T Consensus       340 ~ll~~AGF~~v~~~~~~~~~~vie~~k~  367 (368)
T 3reo_A          340 ALAMASGFRGFKVASCAFNTYVMEFLKT  367 (368)
T ss_dssp             HHHHHTTCCEEEEEEEETTEEEEEEECC
T ss_pred             HHHHHCCCeeeEEEEeCCCcEEEEEEeC
Confidence            9999999999888654 46667777765

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.86  E-value=1.5e-20  Score=147.50  Aligned_cols=125  Identities=21%  Similarity=0.291  Sum_probs=103.8

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC-CCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-PKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~d~~  124 (235)
                      .....+.+.+.+...++.+|||+|||+|..+..+++.+.  +|+|+|+|+.+++.|+++....... ...++.+..+|+.
T Consensus        42 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~  119 (293)
T 3thr_A           42 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL  119 (293)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred             HHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence            455566677766656678999999999999999999876  9999999999999999876432210 0236788999998


Q ss_pred             cCC---CCCCceeEEEec-ccccccCC-------hHHHHHHHHHhccCCcEEEEEEecc
Q 026688          125 RLP---FASSSIDAVHAG-AAIHCWSS-------PSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       125 ~~~---~~~~~~D~i~~~-~~l~~~~~-------~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .++   ++.++||+|++. .+++|+++       ...+++++.++|+|||++++..++.
T Consensus       120 ~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  178 (293)
T 3thr_A          120 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  178 (293)
T ss_dssp             GHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             hCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence            876   677899999998 89999999       7899999999999999999988764

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.86  E-value=1.6e-19  Score=134.44  Aligned_cols=137  Identities=15%  Similarity=0.040  Sum_probs=115.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ..+....+++.+...++.+|||+|||+|.++..+++.++..+++++|+|+.+++.+++++...+   ..++++...|+.+
T Consensus        25 ~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~  101 (204)
T 3e05_A           25 KQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV---ARNVTLVEAFAPE  101 (204)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT---CTTEEEEECCTTT
T ss_pred             hHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeCChhh
Confidence            5666677888888888899999999999999999999877899999999999999999987765   3579999999966


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  205 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (235)
                      .....+.||+|++...++   +...+++++.++|+|||.+++.....                          -+.+++.
T Consensus       102 ~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~--------------------------~~~~~~~  152 (204)
T 3e05_A          102 GLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTL--------------------------DTLTKAV  152 (204)
T ss_dssp             TCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBH--------------------------HHHHHHH
T ss_pred             hhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEeccc--------------------------ccHHHHH
Confidence            433347799999988775   67799999999999999999976543                          1346778


Q ss_pred             HHHHHcCCc
Q 026688          206 DLCRACGLV  214 (235)
Q Consensus       206 ~~l~~~Gf~  214 (235)
                      +.++++||.
T Consensus       153 ~~l~~~g~~  161 (204)
T 3e05_A          153 EFLEDHGYM  161 (204)
T ss_dssp             HHHHHTTCE
T ss_pred             HHHHHCCCc
Confidence            889999983

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.86  E-value=2.2e-21  Score=144.21  Aligned_cols=150  Identities=15%  Similarity=0.120  Sum_probs=115.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      .+..++..+..  + +|||+|||+|.++..+++.+.  +++++|+|+.+++.++++....+    .++.+.+.|+.+.++
T Consensus        20 ~l~~~~~~~~~--~-~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~   90 (202)
T 2kw5_A           20 FLVSVANQIPQ--G-KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEKG----VKITTVQSNLADFDI   90 (202)
T ss_dssp             SHHHHHHHSCS--S-EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHT----CCEEEECCBTTTBSC
T ss_pred             HHHHHHHhCCC--C-CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcC----CceEEEEcChhhcCC
Confidence            34444444443  5 999999999999999998754  99999999999999999887653    278999999988887


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      +.++||+|++.....+..+...+++++.++|+|||.+++.++.......          .......+..+++++++.+++
T Consensus        91 ~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~l  160 (202)
T 2kw5_A           91 VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY----------NTGGPKDLDLLPKLETLQSEL  160 (202)
T ss_dssp             CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG----------TSCCSSSGGGCCCHHHHHHHC
T ss_pred             CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC----------CCCCCCcceeecCHHHHHHHh
Confidence            7789999998543222234578999999999999999999987643210          001112335678999999999


Q ss_pred             HHcCCceeEEE
Q 026688          209 RACGLVDFKCT  219 (235)
Q Consensus       209 ~~~Gf~~~~~~  219 (235)
                      +  ||+++...
T Consensus       161 ~--Gf~v~~~~  169 (202)
T 2kw5_A          161 P--SLNWLIAN  169 (202)
T ss_dssp             S--SSCEEEEE
T ss_pred             c--CceEEEEE
Confidence            9  99987765

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.86  E-value=1.7e-21  Score=152.83  Aligned_cols=154  Identities=16%  Similarity=0.158  Sum_probs=110.6

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC-----------------------------
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-----------------------------  111 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-----------------------------  111 (235)
                      ++.+|||||||+|..+..+++..+..+|+|+|+|+.+++.|++++......                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            578999999999999999999976779999999999999999876543210                             


Q ss_pred             --------------------------CCCCeeEEecccccCC-----CCCCceeEEEecccccccC------ChHHHHHH
Q 026688          112 --------------------------PKENFLLVRADISRLP-----FASSSIDAVHAGAAIHCWS------SPSTGVAE  154 (235)
Q Consensus       112 --------------------------~~~~~~~~~~d~~~~~-----~~~~~~D~i~~~~~l~~~~------~~~~~l~~  154 (235)
                                                -..++++.++|+...+     +..++||+|+|..+++|+.      +..+++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                      0147999999997643     4568999999999997763      55689999


Q ss_pred             HHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHH--cCCceeEEE
Q 026688          155 ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA--CGLVDFKCT  219 (235)
Q Consensus       155 ~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~Gf~~~~~~  219 (235)
                      +.++|+|||.|++.................+...+.     ...+.++++..+|.+  +||+.+++.
T Consensus       206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~-----~~~~~p~~~~~~L~~~~~GF~~~~~~  267 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYY-----RIQLKPEQFSSYLTSPDVGFSSYELV  267 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHH-----HCCCCGGGHHHHHTSTTTCCCEEEEC
T ss_pred             HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhh-----cEEEcHHHHHHHHHhcCCCceEEEEe
Confidence            999999999999975432211000011111111111     123458999999998  999876664

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.86  E-value=2.1e-20  Score=151.52  Aligned_cols=166  Identities=17%  Similarity=0.152  Sum_probs=123.3

Q ss_pred             HHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           52 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        52 ~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      .+.+.+. ..+..+|||+|||+|.++..++++++..+++++|+ +.+++.+++         ..++++..+|+.+ +++.
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~~  267 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFA-SVPQ  267 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCccc-CCCC
Confidence            3444443 44578999999999999999999998889999999 888877654         2469999999987 5553


Q ss_pred             CceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchh---HHHHHHhHhhcCCceeecCHHHHH
Q 026688          131 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF---SRLLRQNMMQISGSYTFLSEREIE  205 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  205 (235)
                        ||+|++..++||++++.  .++++++++|+|||.+++.+...+.... .+.   .................++.++|.
T Consensus       268 --~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~  344 (372)
T 1fp1_D          268 --GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPN-TSEESKLVSTLDNLMFITVGGRERTEKQYE  344 (372)
T ss_dssp             --EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCC-SSHHHHHHHHHHHHHHHHHSCCCEEHHHHH
T ss_pred             --CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCc-cchHHHHHHHhhHHHHhccCCccCCHHHHH
Confidence              99999999999999887  9999999999999999999876543211 111   111111111101123457999999


Q ss_pred             HHHHHcCCceeEEEe-eCc-EEEEEEec
Q 026688          206 DLCRACGLVDFKCTR-NRG-FVMFTATK  231 (235)
Q Consensus       206 ~~l~~~Gf~~~~~~~-~~~-~~~~~~~k  231 (235)
                      ++++++||+++++.. ... +.++.++|
T Consensus       345 ~ll~~aGf~~~~~~~~~~~~~~vie~~~  372 (372)
T 1fp1_D          345 KLSKLSGFSKFQVACRAFNSLGVMEFYK  372 (372)
T ss_dssp             HHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             HHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence            999999999988876 444 56666653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.85  E-value=3.4e-20  Score=140.27  Aligned_cols=154  Identities=18%  Similarity=0.232  Sum_probs=118.8

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--CCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LPF  128 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~~  128 (235)
                      +.+.+.+. .++.+|||+|||+|.++..+++.+  .+++++|+++.+++.++++.          .++...|+.+  .++
T Consensus        23 ~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~   89 (230)
T 3cc8_A           23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEKL----------DHVVLGDIETMDMPY   89 (230)
T ss_dssp             HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTTS----------SEEEESCTTTCCCCS
T ss_pred             HHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHhC----------CcEEEcchhhcCCCC
Confidence            34555555 557899999999999999999884  69999999999999988642          3578889876  456


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh------cCCceeecCHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ------ISGSYTFLSER  202 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  202 (235)
                      +.++||+|++..+++|++++..+++++.++|+|||.+++..++....   ......+...+..      ...+.++++.+
T Consensus        90 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (230)
T 3cc8_A           90 EEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHI---SVLAPLLAGNWTYTEYGLLDKTHIRFFTFN  166 (230)
T ss_dssp             CTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSH---HHHHHHHTTCCCCBSSSTTBTTCCCCCCHH
T ss_pred             CCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchH---HHHHHHhcCCceeccCCCCCcceEEEecHH
Confidence            67899999999999999999999999999999999999998765321   1111111111110      12245678999


Q ss_pred             HHHHHHHHcCCceeEEEe
Q 026688          203 EIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       203 ~~~~~l~~~Gf~~~~~~~  220 (235)
                      ++.++++++||+++....
T Consensus       167 ~~~~~l~~~Gf~~~~~~~  184 (230)
T 3cc8_A          167 EMLRMFLKAGYSISKVDR  184 (230)
T ss_dssp             HHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHcCCeEEEEEe
Confidence            999999999999887764

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.85  E-value=6e-20  Score=148.18  Aligned_cols=167  Identities=19%  Similarity=0.124  Sum_probs=124.1

Q ss_pred             HHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           52 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        52 ~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      .+...+. ..+..+|||||||+|..+..++++.|..+++++|+ +.+++.+++         ..++++..+|+.+ +++.
T Consensus       191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~~p~  259 (364)
T 3p9c_A          191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFK-EVPS  259 (364)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC
T ss_pred             HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCC-CCCC
Confidence            3444444 45578999999999999999999999889999999 888876653         3579999999987 6664


Q ss_pred             CceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhH--HHHHHhHhh-cCCceeecCHHHHH
Q 026688          131 SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS--RLLRQNMMQ-ISGSYTFLSEREIE  205 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~  205 (235)
                      .  |+|++..++|++++.  .+++++++++|+|||++++.+...+.........  ......... .......++.++|.
T Consensus       260 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~  337 (364)
T 3p9c_A          260 G--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQ  337 (364)
T ss_dssp             C--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHH
T ss_pred             C--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHH
Confidence            3  999999999999866  4889999999999999999988765322111111  111111111 12345567899999


Q ss_pred             HHHHHcCCceeEEEee-CcEEEEEEec
Q 026688          206 DLCRACGLVDFKCTRN-RGFVMFTATK  231 (235)
Q Consensus       206 ~~l~~~Gf~~~~~~~~-~~~~~~~~~k  231 (235)
                      ++++++||+++++... +...++.+.|
T Consensus       338 ~ll~~AGF~~v~~~~~~~~~~vie~~k  364 (364)
T 3p9c_A          338 ALARGAGFTGVKSTYIYANAWAIEFTK  364 (364)
T ss_dssp             HHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHCCCceEEEEEcCCceEEEEEeC
Confidence            9999999999988754 4555555544

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.85  E-value=3.5e-20  Score=138.64  Aligned_cols=133  Identities=25%  Similarity=0.307  Sum_probs=107.6

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++.+|||+|||+|.++..+    ...+++++|+|+.+++.++++.        .++.+.+.|+.+++++.++||+|++..
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~  103 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA--------PEATWVRAWGEALPFPGESFDVVLLFT  103 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC--------TTSEEECCCTTSCCSCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcccccCCCCCCcEEEEEEcC
Confidence            5789999999999999877    1128999999999999999874        368899999998888778999999999


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHh-Hh--hcCCceeecCHHHHHHHHHHcC
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-MM--QISGSYTFLSEREIEDLCRACG  212 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~G  212 (235)
                      +++|++++.++++++.++|+|||.+++.+++...     ++....... ..  ....+.++++.+++.++++  |
T Consensus       104 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          104 TLEFVEDVERVLLEARRVLRPGGALVVGVLEALS-----PWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             CTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS-----HHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC-----cHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence            9999999999999999999999999999987542     221111111 01  1123567899999999999  7

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.85  E-value=9.8e-20  Score=134.23  Aligned_cols=138  Identities=19%  Similarity=0.195  Sum_probs=115.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec-
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-  139 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~-  139 (235)
                      ++.+|||+|||+|.++..+++.+.  +++++|+++.+++.++++.        .++.+.+.|+.+.+++.++||+|++. 
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~D~i~~~~  115 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQDF--------PEARWVVGDLSVDQISETDFDLIVSAG  115 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTSCCCCCCEEEEEECC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHhC--------CCCcEEEcccccCCCCCCceeEEEECC
Confidence            478999999999999999998854  9999999999999999874        35889999998877777899999998 


Q ss_pred             ccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeE
Q 026688          140 AAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK  217 (235)
Q Consensus       140 ~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  217 (235)
                      .+++|++..  ..+++++.++|+|||.+++......                        .++.+++.++++++||+++.
T Consensus       116 ~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~------------------------~~~~~~~~~~l~~~Gf~~~~  171 (195)
T 3cgg_A          116 NVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR------------------------GWVFGDFLEVAERVGLELEN  171 (195)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS------------------------SCCHHHHHHHHHHHTEEEEE
T ss_pred             cHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC------------------------CcCHHHHHHHHHHcCCEEee
Confidence            678887433  6899999999999999999876532                        15788999999999999887


Q ss_pred             EEe---------eCcEEEEEEecC
Q 026688          218 CTR---------NRGFVMFTATKP  232 (235)
Q Consensus       218 ~~~---------~~~~~~~~~~k~  232 (235)
                      ...         ...+.+++++|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~v~~k~  195 (195)
T 3cgg_A          172 AFESWDLKPFVQGSEFLVAVFTKK  195 (195)
T ss_dssp             EESSTTCCBCCTTCSEEEEEEEEC
T ss_pred             eecccccCcCCCCCcEEEEEEecC
Confidence            752         234667777764

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.85  E-value=6.1e-20  Score=142.49  Aligned_cols=155  Identities=17%  Similarity=0.113  Sum_probs=116.7

Q ss_pred             HHHhhcC-CCCCCeEEEecCCC---chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           52 LMKGYLK-PVLGGNIIDASCGS---GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        52 ~i~~~~~-~~~~~~vLdiG~G~---G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      .+.+.+. .....+|||||||+   |.++..+.+..+..+|+++|+|+.|++.|++++..     ..+++++++|+.+.+
T Consensus        67 ~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~  141 (274)
T 2qe6_A           67 RGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPE  141 (274)
T ss_dssp             HHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHH
T ss_pred             HHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCch
Confidence            3334443 33458999999999   99888787777778999999999999999998753     347999999996521


Q ss_pred             -----------CCCCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCC
Q 026688          128 -----------FASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG  194 (235)
Q Consensus       128 -----------~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (235)
                                 ++..+||+|++..++||+++  +..+++++.++|+|||+|++.+...+.    ......+...+.....
T Consensus       142 ~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~----~~~~~~~~~~~~~~~~  217 (274)
T 2qe6_A          142 YILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG----LPAQQKLARITRENLG  217 (274)
T ss_dssp             HHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS----CHHHHHHHHHHHHHHS
T ss_pred             hhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc----hHHHHHHHHHHHhcCC
Confidence                       22358999999999999987  679999999999999999999987632    1111222222222222


Q ss_pred             ceeecCHHHHHHHHHHcCCceeE
Q 026688          195 SYTFLSEREIEDLCRACGLVDFK  217 (235)
Q Consensus       195 ~~~~~~~~~~~~~l~~~Gf~~~~  217 (235)
                      ...+++.+++.++|  .||+++.
T Consensus       218 ~~~~~s~~ei~~~l--~G~~l~~  238 (274)
T 2qe6_A          218 EGWARTPEEIERQF--GDFELVE  238 (274)
T ss_dssp             CCCCBCHHHHHHTT--TTCEECT
T ss_pred             CCccCCHHHHHHHh--CCCeEcc
Confidence            45668999999999  5997654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.85  E-value=1.4e-19  Score=139.04  Aligned_cols=176  Identities=18%  Similarity=0.183  Sum_probs=123.5

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      ++.++......++.+|||+|||+|..+..+++.+.  +|+|+|+|+.+++.++++....+    .++.+.++|+.+.+++
T Consensus        30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~  103 (252)
T 1wzn_A           30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAFK  103 (252)
T ss_dssp             HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCCC
T ss_pred             HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhcC----CceEEEECChhhcccC
Confidence            34444444445578999999999999999999864  99999999999999999887653    3689999999887754


Q ss_pred             CCceeEEEecc-cccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCcccc-------------------hhHHHHHH
Q 026688          130 SSSIDAVHAGA-AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-------------------PFSRLLRQ  187 (235)
Q Consensus       130 ~~~~D~i~~~~-~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~-------------------~~~~~~~~  187 (235)
                       ++||+|++.. .+++++  +...+++++.++|+|||.+++..++........                   .+...+..
T Consensus       104 -~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (252)
T 1wzn_A          104 -NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQK  182 (252)
T ss_dssp             -SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-------CCEEEEEEETTEEEEEEEEEEEETTTTE
T ss_pred             -CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccchhcccCCCCeeeeccCCCeeEEEEeecccccccce
Confidence             6899999874 444443  346899999999999999998765421000000                   00000000


Q ss_pred             --------hHhhc--------CCceeecCHHHHHHHHHHcCCceeEEEe--------eCcEEEEEEecCC
Q 026688          188 --------NMMQI--------SGSYTFLSEREIEDLCRACGLVDFKCTR--------NRGFVMFTATKPS  233 (235)
Q Consensus       188 --------~~~~~--------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--------~~~~~~~~~~k~~  233 (235)
                              .....        ..+.+++++++++ +|.++||+++.+..        .+...+++++|++
T Consensus       183 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~~-~l~~aGF~~~~~~~~~~~~~~~~~~r~~~va~k~~  251 (252)
T 1wzn_A          183 LRFKRLVQILRPNGEVKAFLVDDELNIYTPREVR-LLAEKYFEKVKIYGNLKRELSPNDMRYWIVGIAKS  251 (252)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHH-HHHTTTSSEEEEEETTBSSCCTTCCEEEEEEECCC
T ss_pred             eeheeeeeecccCCceeEEEEeeeeeeecHHHHH-HHHHhcCceeeeecccccccCCCCceEEEEEEeec
Confidence                    00000        1124689999997 89999999888752        3467888999864

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.84  E-value=1.4e-19  Score=137.26  Aligned_cols=160  Identities=13%  Similarity=0.115  Sum_probs=118.6

Q ss_pred             CHHHHHHH---HhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           46 PEKEFELM---KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        46 ~~~~~~~i---~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      ..+....+   ++.+...++.+|||+|||+|.++..+++..+..+|+++|+++.+++.+++++..     ..++.+..+|
T Consensus        56 ~~~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~v~~~~~d  130 (230)
T 1fbn_A           56 KSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----RENIIPILGD  130 (230)
T ss_dssp             TCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----CTTEEEEECC
T ss_pred             hhHHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-----CCCeEEEECC
Confidence            34455666   555555668899999999999999999986556999999999999999988654     2478999999


Q ss_pred             ccc----CCCCCCceeEEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCc
Q 026688          123 ISR----LPFASSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS  195 (235)
Q Consensus       123 ~~~----~~~~~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (235)
                      +..    .++. ++||+|+     ++++++   ..+++++.++|+|||.+++........ ...+..             
T Consensus       131 ~~~~~~~~~~~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~-------------  190 (230)
T 1fbn_A          131 ANKPQEYANIV-EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSID-VTKDPK-------------  190 (230)
T ss_dssp             TTCGGGGTTTS-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTC-SSSCHH-------------
T ss_pred             CCCcccccccC-ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCC-CCCCHH-------------
Confidence            987    5655 7899999     455666   678999999999999999973221111 111110             


Q ss_pred             eeecCHHHHHHHHHHcCCceeEEEeeCc----EEEEEEecCC
Q 026688          196 YTFLSEREIEDLCRACGLVDFKCTRNRG----FVMFTATKPS  233 (235)
Q Consensus       196 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~----~~~~~~~k~~  233 (235)
                        .+..+++. +|+++||+.+.......    ..+++++|++
T Consensus       191 --~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k~~  229 (230)
T 1fbn_A          191 --EIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFVGIWEG  229 (230)
T ss_dssp             --HHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEEEEECC
T ss_pred             --HhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEEEEeCC
Confidence              12236777 88999999888775544    5778888765

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.84  E-value=1.6e-20  Score=147.14  Aligned_cols=158  Identities=18%  Similarity=0.212  Sum_probs=109.0

Q ss_pred             HHHHhhcCC--CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC-------------CC--
Q 026688           51 ELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-------------PK--  113 (235)
Q Consensus        51 ~~i~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-------------~~--  113 (235)
                      +.+.+.+..  .++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|++++......             ..  
T Consensus        59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            344444422  35789999999999955444432 2349999999999999999865431100             00  


Q ss_pred             ------------CCeeEEeccccc-CCC-----CCCceeEEEecccccc----cCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          114 ------------ENFLLVRADISR-LPF-----ASSSIDAVHAGAAIHC----WSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       114 ------------~~~~~~~~d~~~-~~~-----~~~~~D~i~~~~~l~~----~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                                  ..+.+..+|+.+ .|+     +.++||+|++..+++|    ++++..+++++.++|||||.|++....
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~  217 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL  217 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                        014567778876 443     3456999999999999    556789999999999999999998644


Q ss_pred             cCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          172 VDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                      .......           ........+++.+++.++|+++||+++....
T Consensus       218 ~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~  255 (289)
T 2g72_A          218 EESWYLA-----------GEARLTVVPVSEEEVREALVRSGYKVRDLRT  255 (289)
T ss_dssp             SCCEEEE-----------TTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             CcceEEc-----------CCeeeeeccCCHHHHHHHHHHcCCeEEEeeE
Confidence            3211000           0001123467999999999999999877653

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.84  E-value=1.1e-19  Score=142.79  Aligned_cols=152  Identities=18%  Similarity=0.202  Sum_probs=117.4

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCCceeEEEe
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHA  138 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~  138 (235)
                      .++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.|++++...+.  ..++.+.++|+.+.++ +.++||+|++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKR--RFKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCC--SSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCC--CccEEEEECCccccccCCCCCcCEEEE
Confidence            457899999999999999988874 45899999999999999999876543  2468999999998776 5688999999


Q ss_pred             cccccc----cCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH----------------h--------H-
Q 026688          139 GAAIHC----WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ----------------N--------M-  189 (235)
Q Consensus       139 ~~~l~~----~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~----------------~--------~-  189 (235)
                      ..+++|    ..++..+++++.++|+|||.+++..++...      ....+..                .        + 
T Consensus       140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  213 (298)
T 1ri5_A          140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV------ILERYKQGRMSNDFYKIELEKMEDVPMESVREYR  213 (298)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH------HHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEE
T ss_pred             CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHH------HHHHHccCccCCeeEEEEeCccccccccccceEE
Confidence            999977    345578999999999999999999876421      0000000                0        0 


Q ss_pred             ----hh-cCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          190 ----MQ-ISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       190 ----~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                          .. ...+.++++++++.++++++||+++....
T Consensus       214 ~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~  249 (298)
T 1ri5_A          214 FTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKG  249 (298)
T ss_dssp             EEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred             EEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecC
Confidence                00 01124577999999999999999888763

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.84  E-value=1.4e-19  Score=134.85  Aligned_cols=138  Identities=15%  Similarity=0.107  Sum_probs=115.0

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.|++++...+.   .++++...|+.+..  .++||+|+++
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~--~~~fD~i~~~  132 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLG-AKSVLATDISDESMTAAEENAALNGI---YDIALQKTSLLADV--DGKFDLIVAN  132 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC---CCCEEEESSTTTTC--CSCEEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEeccccccC--CCCceEEEEC
Confidence            347899999999999999988763 46999999999999999999887653   34899999997643  5789999998


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      ..++++   ..+++++.++|+|||.+++.+...                          .+.+++.++++++||+++...
T Consensus       133 ~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~--------------------------~~~~~~~~~~~~~Gf~~~~~~  183 (205)
T 3grz_A          133 ILAEIL---LDLIPQLDSHLNEDGQVIFSGIDY--------------------------LQLPKIEQALAENSFQIDLKM  183 (205)
T ss_dssp             SCHHHH---HHHGGGSGGGEEEEEEEEEEEEEG--------------------------GGHHHHHHHHHHTTEEEEEEE
T ss_pred             CcHHHH---HHHHHHHHHhcCCCCEEEEEecCc--------------------------ccHHHHHHHHHHcCCceEEee
Confidence            887763   578999999999999999977653                          146788899999999999988


Q ss_pred             eeCcEEEEEEecC
Q 026688          220 RNRGFVMFTATKP  232 (235)
Q Consensus       220 ~~~~~~~~~~~k~  232 (235)
                      ..+.+..++.+++
T Consensus       184 ~~~~w~~~~~~~~  196 (205)
T 3grz_A          184 RAGRWIGLAISRK  196 (205)
T ss_dssp             EETTEEEEEEEEC
T ss_pred             ccCCEEEEEEecc
Confidence            8887777666655

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.84  E-value=1.2e-19  Score=141.87  Aligned_cols=137  Identities=15%  Similarity=0.124  Sum_probs=111.0

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.+++++...+    .++++.+.|+.+.+. .++||+|++..
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~-~~~fD~i~~~~  192 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKEN----LNISTALYDINAANI-QENYDFIVSTV  192 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCGGGCCC-CSCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHcC----CceEEEEeccccccc-cCCccEEEEcc
Confidence            578999999999999999999865  99999999999999999988764    279999999998776 68899999999


Q ss_pred             cccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEE
Q 026688          141 AIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  218 (235)
Q Consensus       141 ~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  218 (235)
                      +++|++++  ..+++++.++|+|||.+++...........             .......++.+++.+++..  |+++..
T Consensus       193 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~--~~~~~~  257 (286)
T 3m70_A          193 VFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC-------------PLPFSFTFAENELKEYYKD--WEFLEY  257 (286)
T ss_dssp             SGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC-------------SSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred             chhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC-------------CCCccccCCHHHHHHHhcC--CEEEEE
Confidence            99999765  489999999999999988876644321100             1122446788999998864  877665


Q ss_pred             E
Q 026688          219 T  219 (235)
Q Consensus       219 ~  219 (235)
                      .
T Consensus       258 ~  258 (286)
T 3m70_A          258 N  258 (286)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.83  E-value=1.6e-18  Score=128.90  Aligned_cols=139  Identities=16%  Similarity=0.109  Sum_probs=111.8

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .......+++.+...++.+|||+|||+|.++..+++.  ..+|+++|+++.+++.|++++...+.  ..++++..+|+.+
T Consensus        40 ~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~  115 (204)
T 3njr_A           40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGL--SPRMRAVQGTAPA  115 (204)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCTTG
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCEEEEeCchhh
Confidence            4455667777788777899999999999999999998  45999999999999999999887653  2379999999987


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  205 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (235)
                      .......||+|++...+    +.. +++++.++|+|||.+++.....+                          +..++.
T Consensus       116 ~~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~--------------------------~~~~~~  164 (204)
T 3njr_A          116 ALADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE--------------------------SETLLT  164 (204)
T ss_dssp             GGTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH--------------------------HHHHHH
T ss_pred             hcccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc--------------------------cHHHHH
Confidence            32233579999987644    455 99999999999999999876531                          345677


Q ss_pred             HHHHHcCCceeEEE
Q 026688          206 DLCRACGLVDFKCT  219 (235)
Q Consensus       206 ~~l~~~Gf~~~~~~  219 (235)
                      +.+++.|+++..+.
T Consensus       165 ~~l~~~g~~i~~i~  178 (204)
T 3njr_A          165 QLHARHGGQLLRID  178 (204)
T ss_dssp             HHHHHHCSEEEEEE
T ss_pred             HHHHhCCCcEEEEE
Confidence            88899998876654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.83  E-value=2.1e-20  Score=139.63  Aligned_cols=153  Identities=19%  Similarity=0.239  Sum_probs=113.4

Q ss_pred             CCCCeEEEecCCCchHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           60 VLGGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      .++.+|||+|||+|..+. .+++.+  .+++++|+|+.+++.+++++...+    .++++.+.|+.+.+++.++||+|++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENN----FKLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTT--CEEEEEECCHHHHHHHHHHHHHHT----CCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcC----CceEEEECchhhCCCCCCceeEEEE
Confidence            347899999999999844 444443  499999999999999999887643    4688999999988877789999999


Q ss_pred             ccccccc--CChHHHHHHHHHhccCCcEEEEEEeccCCCccc--chhHHHHHHhHh-hcCCceeecCHHHHHHHHHHcCC
Q 026688          139 GAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL--IPFSRLLRQNMM-QISGSYTFLSEREIEDLCRACGL  213 (235)
Q Consensus       139 ~~~l~~~--~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gf  213 (235)
                      ..+++|+  .++..+++++.++|+|||.+++.+++.......  .++......... .......+++.+++.+++.+.||
T Consensus        96 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~  175 (209)
T 2p8j_A           96 YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKV  175 (209)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEE
T ss_pred             cChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCc
Confidence            9999999  456799999999999999999999876432110  000000000000 01112368899999999999998


Q ss_pred             ceeEE
Q 026688          214 VDFKC  218 (235)
Q Consensus       214 ~~~~~  218 (235)
                      .....
T Consensus       176 ~~~~~  180 (209)
T 2p8j_A          176 LFKED  180 (209)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            65443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.83  E-value=1.1e-19  Score=146.19  Aligned_cols=156  Identities=15%  Similarity=0.152  Sum_probs=118.5

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      +..+|||+|||+|.++..++++.|..+++++|+ +.+++.+++         ..++++..+|+.+ +++  .||+|++..
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p--~~D~v~~~~  254 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG---------SNNLTYVGGDMFT-SIP--NADAVLLKY  254 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------BTTEEEEECCTTT-CCC--CCSEEEEES
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc---------CCCcEEEeccccC-CCC--CccEEEeeh
Confidence            468999999999999999999988889999999 999887764         2359999999976 544  399999999


Q ss_pred             cccccCChH--HHHHHHHHhccC---CcEEEEEEeccCCCcccc--hhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCC
Q 026688          141 AIHCWSSPS--TGVAEISRVLRP---GGVFVGTTYIVDGPFNLI--PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL  213 (235)
Q Consensus       141 ~l~~~~~~~--~~l~~~~~~L~p---gG~li~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  213 (235)
                      ++||++++.  +++++++++|+|   ||++++.+...+......  ............... ...++.++|.++++++||
T Consensus       255 ~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-g~~~t~~e~~~ll~~aGf  333 (352)
T 1fp2_A          255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLN-GKERNEEEWKKLFIEAGF  333 (352)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGT-CCCEEHHHHHHHHHHTTC
T ss_pred             hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhcc-CCCCCHHHHHHHHHHCCC
Confidence            999999887  999999999999   999999988764322110  111111111111111 455789999999999999


Q ss_pred             ceeEEEeeC-cEEEEEEe
Q 026688          214 VDFKCTRNR-GFVMFTAT  230 (235)
Q Consensus       214 ~~~~~~~~~-~~~~~~~~  230 (235)
                      +++++...+ ...++.++
T Consensus       334 ~~~~~~~~~~~~~vie~~  351 (352)
T 1fp2_A          334 QHYKISPLTGFLSLIEIY  351 (352)
T ss_dssp             CEEEEEEEETTEEEEEEE
T ss_pred             CeeEEEecCCCcEEEEEe
Confidence            988876543 44566654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.83  E-value=7.1e-20  Score=137.44  Aligned_cols=116  Identities=15%  Similarity=0.220  Sum_probs=100.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.++++...     ..++++.+.|+.+.+ 
T Consensus        39 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~-  110 (216)
T 3ofk_A           39 HTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKR-----WSHISWAATDILQFS-  110 (216)
T ss_dssp             HHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTT-----CSSEEEEECCTTTCC-
T ss_pred             HHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhccc-----CCCeEEEEcchhhCC-
Confidence            334455566666778999999999999999999864  999999999999999998765     337999999999877 


Q ss_pred             CCCceeEEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEecc
Q 026688          129 ASSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +.++||+|++..+++|++++   ..+++++.++|+|||.+++.++..
T Consensus       111 ~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          111 TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            57899999999999999987   477999999999999999988753

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.83  E-value=5.7e-19  Score=128.43  Aligned_cols=140  Identities=18%  Similarity=0.162  Sum_probs=109.9

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ..+....+++.+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++...+.  ..++ ++..|..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~-~~~~d~~~   86 (178)
T 3hm2_A           10 KQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV--SDRI-AVQQGAPR   86 (178)
T ss_dssp             HHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC--TTSE-EEECCTTG
T ss_pred             HHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC--CCCE-EEecchHh
Confidence            34455667777777778899999999999999999987778999999999999999999887653  2367 77888754


Q ss_pred             -CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHH
Q 026688          126 -LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI  204 (235)
Q Consensus       126 -~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (235)
                       ++...++||+|++..++++    ..+++++.++|+|||.+++.....+                          +...+
T Consensus        87 ~~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~~~~  136 (178)
T 3hm2_A           87 AFDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE--------------------------SEQML  136 (178)
T ss_dssp             GGGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH--------------------------HHHHH
T ss_pred             hhhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc--------------------------cHHHH
Confidence             3322278999999999887    6789999999999999998876531                          23456


Q ss_pred             HHHHHHcCCceeEE
Q 026688          205 EDLCRACGLVDFKC  218 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~  218 (235)
                      ..++++.|++...+
T Consensus       137 ~~~~~~~~~~~~~~  150 (178)
T 3hm2_A          137 WALRKQFGGTISSF  150 (178)
T ss_dssp             HHHHHHHCCEEEEE
T ss_pred             HHHHHHcCCeeEEE
Confidence            67778888776554

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.82  E-value=2.1e-19  Score=137.41  Aligned_cols=146  Identities=15%  Similarity=0.053  Sum_probs=112.5

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC-----Ccee
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS-----SSID  134 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~D  134 (235)
                      .++.+|||+|||+|.++..+++.++  +|+++|+|+.+++.++++..      ..++++.++|+.+.+...     ..||
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~d  126 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGDA  126 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCcc
Confidence            4578999999999999999999987  99999999999999998862      347999999998754321     2489


Q ss_pred             EEEecccccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHh----------HhhcCCceeecCHH
Q 026688          135 AVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN----------MMQISGSYTFLSER  202 (235)
Q Consensus       135 ~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  202 (235)
                      +|++..+++|++  +...+++++.++|+|||.+++.++....    ..+...+...          ..........++.+
T Consensus       127 ~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (245)
T 3ggd_A          127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC----IDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAE  202 (245)
T ss_dssp             EEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH----HHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHH
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc----cHHHHHHHhCCCCCchhhhhccccCCCCCccCHH
Confidence            999999999998  6689999999999999999999886532    1121111111          00111122347899


Q ss_pred             HHHHHHHHcCCceeEEE
Q 026688          203 EIEDLCRACGLVDFKCT  219 (235)
Q Consensus       203 ~~~~~l~~~Gf~~~~~~  219 (235)
                      ++.+++  +||+++...
T Consensus       203 ~~~~~~--aGf~~~~~~  217 (245)
T 3ggd_A          203 DIELYF--PDFEILSQG  217 (245)
T ss_dssp             HHHHHC--TTEEEEEEE
T ss_pred             HHHHHh--CCCEEEecc
Confidence            999999  999987765

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.82  E-value=1.2e-18  Score=128.33  Aligned_cols=153  Identities=12%  Similarity=0.176  Sum_probs=119.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      ...+.+++.+...++.+|||+|||+|.++..+++.  ..+++++|+++.+++.+++++...+.. ..++++...|+.+. 
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~-  114 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLD-NYDIRVVHSDLYEN-  114 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCT-TSCEEEEECSTTTT-
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCC-ccceEEEECchhcc-
Confidence            67778888887777899999999999999999988  459999999999999999998765421 11399999999773 


Q ss_pred             CCCCceeEEEecccccc-cCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688          128 FASSSIDAVHAGAAIHC-WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  206 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~-~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (235)
                      .+.++||+|++...+++ ..+...+++++.++|+|||.+++..+...                          ...++.+
T Consensus       115 ~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~~~~~~  168 (194)
T 1dus_A          115 VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ--------------------------GAKSLAK  168 (194)
T ss_dssp             CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH--------------------------HHHHHHH
T ss_pred             cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCC--------------------------ChHHHHH
Confidence            34678999999888776 34456899999999999999999887642                          1234666


Q ss_pred             HHHHcCCceeEE-EeeCcEEEEEEec
Q 026688          207 LCRACGLVDFKC-TRNRGFVMFTATK  231 (235)
Q Consensus       207 ~l~~~Gf~~~~~-~~~~~~~~~~~~k  231 (235)
                      .+++. |..+++ .....+.++.++|
T Consensus       169 ~l~~~-~~~~~~~~~~~~~~~~~~~k  193 (194)
T 1dus_A          169 YMKDV-FGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred             HHHHH-hcceEEEecCCcEEEEEEee
Confidence            77776 443343 4556777777775

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.82  E-value=2.6e-20  Score=141.67  Aligned_cols=152  Identities=9%  Similarity=0.124  Sum_probs=107.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--  126 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--  126 (235)
                      ..+.+...+. .++.+|||||||+|..+..+++..+ .+++++|+|+.+++.|+++....    ..++.+..+|....  
T Consensus        49 ~m~~~a~~~~-~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~----~~~~~~~~~~a~~~~~  122 (236)
T 3orh_A           49 YMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAP  122 (236)
T ss_dssp             HHHHHHHHHT-TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGG
T ss_pred             HHHHHHHhhc-cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC----CCceEEEeehHHhhcc
Confidence            3444444444 4578999999999999999988765 58999999999999999988765    34678888887653  


Q ss_pred             CCCCCceeEEEe-----cccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688          127 PFASSSIDAVHA-----GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE  201 (235)
Q Consensus       127 ~~~~~~~D~i~~-----~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (235)
                      ++++++||.|++     ...++|..++..+++++.|+|||||.+++......         .   ...............
T Consensus       123 ~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~---------~---~~~~~~~~~~~~~~~  190 (236)
T 3orh_A          123 TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSW---------G---ELMKSKYSDITIMFE  190 (236)
T ss_dssp             GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHH---------H---HHTTTTCSCHHHHHH
T ss_pred             cccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCc---------h---hhhhhhhhhhhhhhH
Confidence            466788999985     34566777888999999999999999987432210         0   000000011111224


Q ss_pred             HHHHHHHHHcCCceeEE
Q 026688          202 REIEDLCRACGLVDFKC  218 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~~~~  218 (235)
                      +.+...|.++||++..+
T Consensus       191 ~~~~~~L~eaGF~~~~i  207 (236)
T 3orh_A          191 ETQVPALLEAGFRRENI  207 (236)
T ss_dssp             HHTHHHHHHHTCCGGGE
T ss_pred             HHHHHHHHHcCCeEEEE
Confidence            55667788999986444

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.82  E-value=8.8e-19  Score=128.77  Aligned_cols=137  Identities=19%  Similarity=0.200  Sum_probs=111.6

Q ss_pred             CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      ........+.+.+...++.+|||+|||+|..+..+++.+  .+++++|+++.+++.+++++...+.  ..++.+.+.|+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~   92 (192)
T 1l3i_A           17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGL--GDNVTLMEGDAP   92 (192)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTC--CTTEEEEESCHH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCC--CcceEEEecCHH
Confidence            356677777887877788999999999999999999887  5999999999999999998877653  257899999987


Q ss_pred             cCCCCC-CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHH
Q 026688          125 RLPFAS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  203 (235)
Q Consensus       125 ~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (235)
                      + +++. +.||+|++..++++   ...+++++.++|+|||.+++..+..                          .+..+
T Consensus        93 ~-~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~~~--------------------------~~~~~  142 (192)
T 1l3i_A           93 E-ALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAILL--------------------------ETKFE  142 (192)
T ss_dssp             H-HHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECBH--------------------------HHHHH
T ss_pred             H-hcccCCCCCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEecCc--------------------------chHHH
Confidence            6 2222 58999999877654   4788999999999999999987643                          12456


Q ss_pred             HHHHHHHcCCce
Q 026688          204 IEDLCRACGLVD  215 (235)
Q Consensus       204 ~~~~l~~~Gf~~  215 (235)
                      +.+.+++.||.+
T Consensus       143 ~~~~l~~~g~~~  154 (192)
T 1l3i_A          143 AMECLRDLGFDV  154 (192)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             HHHHHHHCCCce
Confidence            788899999943

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.81  E-value=3.6e-19  Score=139.89  Aligned_cols=159  Identities=17%  Similarity=0.130  Sum_probs=108.5

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCC---CCCeeEEeccc------ccC--CCC
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADI------SRL--PFA  129 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~~~~d~------~~~--~~~  129 (235)
                      ++.+|||+|||+|..+..+++.+ ..+|+|+|+|+.+++.|+++....+...   .-++++.+.|+      .++  +++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            46899999999998777666654 3589999999999999999886543100   00256777877      222  245


Q ss_pred             CCceeEEEeccccccc---CChHHHHHHHHHhccCCcEEEEEEeccCCCcccc-----------hhHHHH---H-----H
Q 026688          130 SSSIDAVHAGAAIHCW---SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-----------PFSRLL---R-----Q  187 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~-----------~~~~~~---~-----~  187 (235)
                      .++||+|+|..++|++   .+...+++++.++|||||.+++.+++........           +....+   .     .
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  206 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR  206 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence            6799999999999875   3446899999999999999999988643200000           000000   0     0


Q ss_pred             --hH--h--hcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          188 --NM--M--QISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       188 --~~--~--~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                        .+  .  .......+++++++.++++++||+++....
T Consensus       207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~  245 (302)
T 2vdw_A          207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVD  245 (302)
T ss_dssp             EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecC
Confidence              00  0  001113467889999999999999988754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.81  E-value=8.2e-19  Score=134.83  Aligned_cols=136  Identities=14%  Similarity=0.173  Sum_probs=114.0

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .++.+|||+|||+|.++..+++.++  +|+++|+++.+++.+++++..++.   . +++...|+.+. ++.++||+|+++
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~---~-v~~~~~d~~~~-~~~~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGV---R-PRFLEGSLEAA-LPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTC---C-CEEEESCHHHH-GGGCCEEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC---c-EEEEECChhhc-CcCCCCCEEEEC
Confidence            4478999999999999999999876  999999999999999999887643   2 88889998762 345789999987


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      ...++   ...+++.+.++|+|||.++++....                          .+.+++.+.++++||+++...
T Consensus       192 ~~~~~---~~~~l~~~~~~LkpgG~lils~~~~--------------------------~~~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          192 LYAEL---HAALAPRYREALVPGGRALLTGILK--------------------------DRAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             CCHHH---HHHHHHHHHHHEEEEEEEEEEEEEG--------------------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred             CcHHH---HHHHHHHHHHHcCCCCEEEEEeecc--------------------------CCHHHHHHHHHHCCCEEEEEe
Confidence            65553   3578999999999999999987653                          135788999999999999998


Q ss_pred             eeCcEEEEEEec
Q 026688          220 RNRGFVMFTATK  231 (235)
Q Consensus       220 ~~~~~~~~~~~k  231 (235)
                      ..+.+..++++|
T Consensus       243 ~~~~W~~l~~~k  254 (254)
T 2nxc_A          243 AEGEWVLLAYGR  254 (254)
T ss_dssp             EETTEEEEEEEC
T ss_pred             ccCCeEEEEEEC
Confidence            888888888875

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.81  E-value=4.5e-19  Score=142.94  Aligned_cols=157  Identities=16%  Similarity=0.142  Sum_probs=118.3

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      +..+|||||||+|.++..+++++|..+++++|+ +.+++.+++         ..++++..+|+.+ +++  .||+|++..
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~v~~~~  259 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFK-SIP--SADAVLLKW  259 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTT-CCC--CCSEEEEES
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCC-CCC--CceEEEEcc
Confidence            468999999999999999999998889999999 788876653         2359999999987 654  499999999


Q ss_pred             cccccCChH--HHHHHHHHhccC---CcEEEEEEeccCCCccc--chhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCC
Q 026688          141 AIHCWSSPS--TGVAEISRVLRP---GGVFVGTTYIVDGPFNL--IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL  213 (235)
Q Consensus       141 ~l~~~~~~~--~~l~~~~~~L~p---gG~li~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  213 (235)
                      ++||++++.  +++++++++|+|   ||.+++.+...+.....  ....................++.++|.++++++||
T Consensus       260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf  339 (358)
T 1zg3_A          260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGF  339 (358)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCC
Confidence            999999877  999999999999   99999988765432111  01111111111111112346799999999999999


Q ss_pred             ceeEEEeeCc-EEEEEEe
Q 026688          214 VDFKCTRNRG-FVMFTAT  230 (235)
Q Consensus       214 ~~~~~~~~~~-~~~~~~~  230 (235)
                      +++++...+. ..++.++
T Consensus       340 ~~~~~~~~~~~~~vie~~  357 (358)
T 1zg3_A          340 SSYKITPISGFKSLIEVY  357 (358)
T ss_dssp             CEEEEEEETTTEEEEEEE
T ss_pred             CeeEEEecCCCcEEEEEe
Confidence            9988876554 4555554

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.81  E-value=1.9e-18  Score=134.45  Aligned_cols=156  Identities=13%  Similarity=0.095  Sum_probs=120.2

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      +..+.+.+.+.+.+. .++.+|||+|||+|..+..+++..+..+|+++|+|+.+++.+++++...+.   .++++.++|+
T Consensus        93 ~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~v~~~~~d~  168 (276)
T 2b3t_A           93 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDW  168 (276)
T ss_dssp             TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCST
T ss_pred             chHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEEcch
Confidence            445566777777775 457899999999999999999887778999999999999999999877653   3799999999


Q ss_pred             ccCCCCCCceeEEEecc-------------cccccC------------ChHHHHHHHHHhccCCcEEEEEEeccCCCccc
Q 026688          124 SRLPFASSSIDAVHAGA-------------AIHCWS------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL  178 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~-------------~l~~~~------------~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~  178 (235)
                      .+. ++.++||+|+++.             +++|.+            ....+++++.++|+|||.+++....       
T Consensus       169 ~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~-------  240 (276)
T 2b3t_A          169 FSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-------  240 (276)
T ss_dssp             TGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-------
T ss_pred             hhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-------
Confidence            763 3357899999983             333322            2357889999999999999986321       


Q ss_pred             chhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE--eeCcEEEEEEec
Q 026688          179 IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATK  231 (235)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~~~~~~~k  231 (235)
                                          .+.+++.++++++||..+.+.  ..+...+++++|
T Consensus       241 --------------------~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~  275 (276)
T 2b3t_A          241 --------------------QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY  275 (276)
T ss_dssp             --------------------SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred             --------------------hHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence                                356788999999999876654  344555666654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.80  E-value=9.7e-20  Score=138.62  Aligned_cols=117  Identities=9%  Similarity=0.193  Sum_probs=91.8

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-  126 (235)
                      ...+.+.... ..++.+|||+|||+|.++..+++.++ .+|+++|+|+.+++.|+++....    ..++.+.++|+.+. 
T Consensus        48 ~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~  121 (236)
T 1zx0_A           48 PYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVA  121 (236)
T ss_dssp             HHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHG
T ss_pred             HHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhc----CCCeEEEecCHHHhh
Confidence            4445555544 34578999999999999999977543 48999999999999999987654    24789999999887 


Q ss_pred             -CCCCCceeEEEe-cccccccCC-----hHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 -PFASSSIDAVHA-GAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 -~~~~~~~D~i~~-~~~l~~~~~-----~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                       ++++++||+|++ ...+ +..+     ...+++++.++|||||.+++.+..
T Consensus       122 ~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          122 PTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             GGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             cccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence             777889999999 5543 2222     247799999999999999986654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.80  E-value=4e-18  Score=123.15  Aligned_cols=117  Identities=15%  Similarity=0.102  Sum_probs=97.6

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .++.+|||+|||+|.++..+++.+   +|+|+|+|+.+++.            ..++++.++|+.+ +++.++||+|+++
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~------------~~~~~~~~~d~~~-~~~~~~fD~i~~n   85 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES------------HRGGNLVRADLLC-SINQESVDVVVFN   85 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT------------CSSSCEEECSTTT-TBCGGGCSEEEEC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc------------ccCCeEEECChhh-hcccCCCCEEEEC
Confidence            446799999999999999999886   99999999999987            1268899999987 5556899999999


Q ss_pred             ccccccCCh---------HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHH
Q 026688          140 AAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  210 (235)
Q Consensus       140 ~~l~~~~~~---------~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  210 (235)
                      ..+++.++.         ..+++++.+.+ |||.+++.....                          .+.+++.+++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--------------------------~~~~~l~~~l~~  138 (170)
T 3q87_B           86 PPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--------------------------NRPKEVLARLEE  138 (170)
T ss_dssp             CCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--------------------------GCHHHHHHHHHH
T ss_pred             CCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--------------------------CCHHHHHHHHHH
Confidence            888866554         47888999999 999999987653                          356788999999


Q ss_pred             cCCceeEEE
Q 026688          211 CGLVDFKCT  219 (235)
Q Consensus       211 ~Gf~~~~~~  219 (235)
                      +||+...+.
T Consensus       139 ~gf~~~~~~  147 (170)
T 3q87_B          139 RGYGTRILK  147 (170)
T ss_dssp             TTCEEEEEE
T ss_pred             CCCcEEEEE
Confidence            999876665

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.80  E-value=8.7e-19  Score=136.31  Aligned_cols=135  Identities=19%  Similarity=0.171  Sum_probs=106.2

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEecccccCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLP  127 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~~  127 (235)
                      .+.+...+...++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.+++++... +   ..++++..+|+.+ +
T Consensus        99 ~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~-~  174 (275)
T 1yb2_A           99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIAD-F  174 (275)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTT-C
T ss_pred             HHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECchhc-c
Confidence            346666677777899999999999999999987 56679999999999999999998765 4   3579999999987 5


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  207 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (235)
                      ++.++||+|++     +.+++..+++++.++|+|||.+++.++...                          ..+++.+.
T Consensus       175 ~~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--------------------------~~~~~~~~  223 (275)
T 1yb2_A          175 ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD--------------------------QSEKTVLS  223 (275)
T ss_dssp             CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH--------------------------HHHHHHHH
T ss_pred             CcCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH--------------------------HHHHHHHH
Confidence            55678999997     577888999999999999999999876421                          23456677


Q ss_pred             HHHcCCceeEEE
Q 026688          208 CRACGLVDFKCT  219 (235)
Q Consensus       208 l~~~Gf~~~~~~  219 (235)
                      ++++||..++..
T Consensus       224 l~~~Gf~~~~~~  235 (275)
T 1yb2_A          224 LSASGMHHLETV  235 (275)
T ss_dssp             SGGGTEEEEEEE
T ss_pred             HHHCCCeEEEEE
Confidence            778888776654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.80  E-value=6.2e-19  Score=151.10  Aligned_cols=167  Identities=10%  Similarity=0.071  Sum_probs=123.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCC---CCCCCeeEEeccc
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN---FPKENFLLVRADI  123 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~d~  123 (235)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|++++.....   ....++++.++|+
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            455666777665568999999999999999999987 446999999999999999987754211   0135799999999


Q ss_pred             ccCCCCCCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHH--------HH----hH
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL--------RQ----NM  189 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~--------~~----~~  189 (235)
                      .++++..+.||+|++..+++|++++.  .+++++.++|+|| .+++.+++.+.    .+....+        ..    ..
T Consensus       788 ~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey----N~lF~~Lnp~tr~~dPd~~~~~~  862 (950)
T 3htx_A          788 LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF----NTILQRSTPETQEENNSEPQLPK  862 (950)
T ss_dssp             TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG----HHHHTCC------------CCSS
T ss_pred             HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh----hhhhhhccccccccccccccccc
Confidence            99888788999999999999999875  5899999999999 88888876531    1111000        00    00


Q ss_pred             hhcCCceeecCHHHHHH----HHHHcCCceeEEE
Q 026688          190 MQISGSYTFLSEREIED----LCRACGLVDFKCT  219 (235)
Q Consensus       190 ~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~~~  219 (235)
                      .....+...++.++++.    +.++.||.+....
T Consensus       863 fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvG  896 (950)
T 3htx_A          863 FRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSG  896 (950)
T ss_dssp             CSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ccccCcceeecHHHHHHHHHHHHHhcCcEEEEEc
Confidence            11223445677888777    6777899764443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.80  E-value=3e-19  Score=134.22  Aligned_cols=154  Identities=18%  Similarity=0.198  Sum_probs=107.6

Q ss_pred             hhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhh----hcCCCCCCCeeEEecccccCCCCC
Q 026688           55 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ----QESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      +.+...++.+|||+|||+|.++..+++..|..+|+|+|+|+.+++.+.++..    ..+   ..++.+.++|+.+++++.
T Consensus        21 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~---~~~v~~~~~d~~~l~~~~   97 (218)
T 3mq2_A           21 EQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG---LPNLLYLWATAERLPPLS   97 (218)
T ss_dssp             HHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC---CTTEEEEECCSTTCCSCC
T ss_pred             HHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC---CCceEEEecchhhCCCCC
Confidence            3344556789999999999999999999888899999999998886443332    222   347999999999988765


Q ss_pred             CceeEEEecc---cc--cccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688          131 SSIDAVHAGA---AI--HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  205 (235)
Q Consensus       131 ~~~D~i~~~~---~l--~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (235)
                      +. |.|.+..   ..  +|++++..+++++.++|||||.+++........ ...+.   +    .........+..+++.
T Consensus        98 ~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~---~----~~~~~~~~~~~~~~l~  168 (218)
T 3mq2_A           98 GV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWR-PSVPE---V----GEHPEPTPDSADEWLA  168 (218)
T ss_dssp             CE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBT-TBCGG---G----TTCCCCCHHHHHHHHH
T ss_pred             CC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccc-ccccc---c----ccCCccchHHHHHHHH
Confidence            55 7666332   23  377888999999999999999999965433211 11110   0    0111111122345588


Q ss_pred             HHHHHcCCceeEEEe
Q 026688          206 DLCRACGLVDFKCTR  220 (235)
Q Consensus       206 ~~l~~~Gf~~~~~~~  220 (235)
                      .+++++||++..+..
T Consensus       169 ~~l~~aGf~i~~~~~  183 (218)
T 3mq2_A          169 PRYAEAGWKLADCRY  183 (218)
T ss_dssp             HHHHHTTEEEEEEEE
T ss_pred             HHHHHcCCCceeeec
Confidence            899999999877764

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.80  E-value=1e-17  Score=122.16  Aligned_cols=137  Identities=15%  Similarity=0.175  Sum_probs=112.6

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      +......+.+.+.+...++.+|||+|||+|.++..+++  +..+++++|+++.+++.+++++...+   ..++++.+.|+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~   92 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFN---IKNCQIIKGRA   92 (183)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTT---CCSEEEEESCH
T ss_pred             cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcC---CCcEEEEECCc
Confidence            34567778888888777789999999999999999988  45699999999999999999988765   24799999999


Q ss_pred             ccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHH
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  203 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (235)
                      .+ +++.++||+|++..+    .+...+++++.++  |||.+++..+...                          +..+
T Consensus        93 ~~-~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~--------------------------~~~~  139 (183)
T 2yxd_A           93 ED-VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLE--------------------------NAAK  139 (183)
T ss_dssp             HH-HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH--------------------------HHHH
T ss_pred             cc-cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccc--------------------------cHHH
Confidence            87 555678999999887    5677889999998  9999999876531                          2456


Q ss_pred             HHHHHHHcCCceeEE
Q 026688          204 IEDLCRACGLVDFKC  218 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~  218 (235)
                      +.+.++++||.+..+
T Consensus       140 ~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          140 IINEFESRGYNVDAV  154 (183)
T ss_dssp             HHHHHHHTTCEEEEE
T ss_pred             HHHHHHHcCCeEEEE
Confidence            788899999865443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.80  E-value=1.5e-18  Score=129.97  Aligned_cols=118  Identities=24%  Similarity=0.318  Sum_probs=98.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ....+.+...+  .++.+|||+|||+|.++..+++.++. +++++|+++.+++.++++...     ..++.+.+.|+.+.
T Consensus        30 ~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~  101 (215)
T 2pxx_A           30 SSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKL  101 (215)
T ss_dssp             HHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSC
T ss_pred             HHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcC
Confidence            34455555555  34789999999999999999998753 899999999999999998754     34789999999888


Q ss_pred             CCCCCceeEEEecccccccC---------------ChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          127 PFASSSIDAVHAGAAIHCWS---------------SPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~---------------~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +++.++||+|++..+++++.               +...+++++.++|+|||.+++.++..
T Consensus       102 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            87778999999998887654               44689999999999999999988754

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.80  E-value=1.3e-18  Score=134.29  Aligned_cols=154  Identities=22%  Similarity=0.292  Sum_probs=111.6

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      .+.+...+.  ++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++..        . .+.+.|+.+++++
T Consensus        45 ~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~--------~-~~~~~d~~~~~~~  111 (260)
T 2avn_A           45 GSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV--------K-NVVEAKAEDLPFP  111 (260)
T ss_dssp             HHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC--------S-CEEECCTTSCCSC
T ss_pred             HHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC--------C-CEEECcHHHCCCC
Confidence            344444444  578999999999999999998854  99999999999999998743        1 2788999888877


Q ss_pred             CCceeEEEeccccccc-CChHHHHHHHHHhccCCcEEEEEEeccCCCccc---chhHHHHHHhHhhcC-C--------ce
Q 026688          130 SSSIDAVHAGAAIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL---IPFSRLLRQNMMQIS-G--------SY  196 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~-~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~--------~~  196 (235)
                      .++||+|++..+++|+ +++..+++++.++|+|||.+++..++.......   ..........+.... .        ..
T Consensus       112 ~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (260)
T 2avn_A          112 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNS  191 (260)
T ss_dssp             TTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEE
T ss_pred             CCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEE
Confidence            7899999998877666 778899999999999999999988764210000   000011111111000 0        12


Q ss_pred             eecCHHHHHHHHHHcCCceeEEE
Q 026688          197 TFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       197 ~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      .+++++++.++   +||+++.+.
T Consensus       192 ~~~~~~~l~~l---aGf~~~~~~  211 (260)
T 2avn_A          192 YAFKPEDLDSL---EGFETVDIR  211 (260)
T ss_dssp             ECBCGGGGSSC---TTEEEEEEE
T ss_pred             eccCHHHHHHh---cCceEEEEE
Confidence            36899999888   999988775

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.80  E-value=4e-18  Score=127.74  Aligned_cols=107  Identities=20%  Similarity=0.141  Sum_probs=90.4

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~  138 (235)
                      ++.+|||+|||+|.++..+++..|...++|+|+++.+++.|++++...+   ..++.++++|+.+++  ++.++||+|++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            4679999999999999999999888899999999999999999987765   357999999998865  66778999998


Q ss_pred             cccccccC--------ChHHHHHHHHHhccCCcEEEEEEe
Q 026688          139 GAAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       139 ~~~l~~~~--------~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +....+..        ....+++++.++|+|||.+++.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            86543322        124789999999999999998764

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.80  E-value=8.2e-18  Score=126.25  Aligned_cols=161  Identities=13%  Similarity=0.074  Sum_probs=115.1

Q ss_pred             CHHHHHHHHh---hcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           46 PEKEFELMKG---YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        46 ~~~~~~~i~~---~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      ..++...+..   .+...|+.+|||+|||+|.++..+++. ++..+|+++|+++.+++.++++...     ..++..+..
T Consensus        59 rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-----~~ni~~V~~  133 (233)
T 4df3_A           59 RSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-----RRNIFPILG  133 (233)
T ss_dssp             TCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-----CTTEEEEES
T ss_pred             chHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-----hcCeeEEEE
Confidence            3455555554   455778999999999999999999987 7888999999999999999988765     347888888


Q ss_pred             cccc---CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceee
Q 026688          122 DISR---LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF  198 (235)
Q Consensus       122 d~~~---~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (235)
                      |...   .+...+.+|+|++.  +.+..++..++.++.++|||||.++++....... ...              .... 
T Consensus       134 d~~~p~~~~~~~~~vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d-~~~--------------p~~~-  195 (233)
T 4df3_A          134 DARFPEKYRHLVEGVDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSID-VTT--------------EPSE-  195 (233)
T ss_dssp             CTTCGGGGTTTCCCEEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHH-HHT--------------CCCH-
T ss_pred             eccCccccccccceEEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccCC-CCC--------------ChHH-
Confidence            8754   34456789998864  3444566789999999999999999876433100 000              0000 


Q ss_pred             cCHHHHHHHHHHcCCceeEEEeeCc----EEEEEEe
Q 026688          199 LSEREIEDLCRACGLVDFKCTRNRG----FVMFTAT  230 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~~~~~----~~~~~~~  230 (235)
                       ...+..+.|+++||++++.....+    ..+++++
T Consensus       196 -~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~~~  230 (233)
T 4df3_A          196 -VYKREIKTLMDGGLEIKDVVHLDPFDRDHAMIYAV  230 (233)
T ss_dssp             -HHHHHHHHHHHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred             -HHHHHHHHHHHCCCEEEEEEccCCCCCceEEEEEE
Confidence             112335677899999988765443    4555554

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.79  E-value=8.1e-19  Score=126.08  Aligned_cols=164  Identities=7%  Similarity=0.024  Sum_probs=118.7

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      |..+...+.+.+++..  +.+|||+|||+|.++..++...|.++|+++|+|+.|++.+++++...+.  ..++.+  .|.
T Consensus        34 p~ld~fY~~~~~~l~~--~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~--~~~v~~--~d~  107 (200)
T 3fzg_A           34 ATLNDFYTYVFGNIKH--VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT--TIKYRF--LNK  107 (200)
T ss_dssp             GGHHHHHHHHHHHSCC--CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC--SSEEEE--ECC
T ss_pred             HhHHHHHHHHHhhcCC--CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CccEEE--ecc
Confidence            4456667777777755  7899999999999999999998888999999999999999999987653  114444  666


Q ss_pred             ccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHH
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  203 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (235)
                      ... .+.+.||+|++..++|++++.+..+.++.+.|+|||.++-- ++..-. .              ........-...
T Consensus       108 ~~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISf-ptksl~-G--------------r~~gm~~~Y~~~  170 (200)
T 3fzg_A          108 ESD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISF-PIKSLS-G--------------KEKGMEENYQLW  170 (200)
T ss_dssp             HHH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEE-ECCCCC-----------------CTTCCCCHHHH
T ss_pred             ccc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEe-ChHHhc-C--------------CCcchhhhHHHH
Confidence            544 34688999999999999966677778999999998766643 332110 0              000111122345


Q ss_pred             HHHHHHHcCCceeEEEeeCcEEEEEEec
Q 026688          204 IEDLCRACGLVDFKCTRNRGFVMFTATK  231 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~k  231 (235)
                      |++.+ ...+.+++...++.=.+|+.+|
T Consensus       171 ~~~~~-~~~~~~~~~~~~~nEl~y~~~~  197 (200)
T 3fzg_A          171 FESFT-KGWIKILDSKVIGNELVYITSG  197 (200)
T ss_dssp             HHHHT-TTTSCEEEEEEETTEEEEEECC
T ss_pred             HHHhc-cCcceeeeeeeeCceEEEEEec
Confidence            56655 5567778888888766666665

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.79  E-value=2.4e-18  Score=131.23  Aligned_cols=129  Identities=15%  Similarity=0.004  Sum_probs=103.4

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC---CCceeEE
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAV  136 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~i  136 (235)
                      .++.+|||+|||+|..+..++...+..+|+++|+|+.+++.++++....+   ..++++.++|+.+++..   .++||+|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---LENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEeccHHHhcccccccCCccEE
Confidence            35789999999999999999987677799999999999999999987765   34699999999876643   5789999


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCcee
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF  216 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  216 (235)
                      ++..    +.+...+++.+.++|+|||.+++......        .                -...++.+.+++.||.+.
T Consensus       146 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~--------~----------------~~~~~~~~~l~~~g~~~~  197 (240)
T 1xdz_A          146 TARA----VARLSVLSELCLPLVKKNGLFVALKAASA--------E----------------EELNAGKKAITTLGGELE  197 (240)
T ss_dssp             EEEC----CSCHHHHHHHHGGGEEEEEEEEEEECC-C--------H----------------HHHHHHHHHHHHTTEEEE
T ss_pred             EEec----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc--------h----------------HHHHHHHHHHHHcCCeEe
Confidence            9866    46678999999999999999988632210        0                012456788899999877


Q ss_pred             EEE
Q 026688          217 KCT  219 (235)
Q Consensus       217 ~~~  219 (235)
                      ...
T Consensus       198 ~~~  200 (240)
T 1xdz_A          198 NIH  200 (240)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.79  E-value=5.5e-18  Score=130.48  Aligned_cols=142  Identities=18%  Similarity=0.167  Sum_probs=115.4

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEec
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRA  121 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~  121 (235)
                      +........+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.+++++... +   ..++++...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~  155 (258)
T 2pwy_A           79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLG  155 (258)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEES
T ss_pred             cccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEEC
Confidence            344556677788888778899999999999999999998 66679999999999999999998765 4   357999999


Q ss_pred             ccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688          122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE  201 (235)
Q Consensus       122 d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (235)
                      |+.+.+++.++||+|++     +.+++..+++++.++|+|||.+++..+...                          ..
T Consensus       156 d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~  204 (258)
T 2pwy_A          156 KLEEAELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNIT--------------------------QV  204 (258)
T ss_dssp             CGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH--------------------------HH
T ss_pred             chhhcCCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH--------------------------HH
Confidence            99887676788999997     467778899999999999999999876421                          12


Q ss_pred             HHHHHHHHHcCCceeEEE
Q 026688          202 REIEDLCRACGLVDFKCT  219 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~~~~~  219 (235)
                      .++...++++||..+...
T Consensus       205 ~~~~~~l~~~gf~~~~~~  222 (258)
T 2pwy_A          205 LELVRAAEAHPFRLERVL  222 (258)
T ss_dssp             HHHHHHHTTTTEEEEEEE
T ss_pred             HHHHHHHHHCCCceEEEE
Confidence            455667777888765544

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.79  E-value=3.6e-18  Score=131.34  Aligned_cols=143  Identities=21%  Similarity=0.272  Sum_probs=117.0

Q ss_pred             CCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           43 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        43 ~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      .+........+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|++++...+.  ..++++...
T Consensus        75 ~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~v~~~~~  152 (255)
T 3mb5_A           75 QIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF--DDRVTIKLK  152 (255)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC--TTTEEEECS
T ss_pred             ccccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC--CCceEEEEC
Confidence            3345566778888888888899999999999999999998 7778999999999999999999887664  345999999


Q ss_pred             ccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688          122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE  201 (235)
Q Consensus       122 d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (235)
                      |+.+. ++.++||+|++     +.+++..+++++.++|+|||.+++..+..+                          ..
T Consensus       153 d~~~~-~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~  200 (255)
T 3mb5_A          153 DIYEG-IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSN--------------------------QV  200 (255)
T ss_dssp             CGGGC-CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHH--------------------------HH
T ss_pred             chhhc-cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHH--------------------------HH
Confidence            99864 55678999997     467778899999999999999998765421                          23


Q ss_pred             HHHHHHHHHcC--CceeEEE
Q 026688          202 REIEDLCRACG--LVDFKCT  219 (235)
Q Consensus       202 ~~~~~~l~~~G--f~~~~~~  219 (235)
                      .++.+.++++|  |..++..
T Consensus       201 ~~~~~~l~~~g~~f~~~~~~  220 (255)
T 3mb5_A          201 MRLHEKLREFKDYFMKPRTI  220 (255)
T ss_dssp             HHHHHHHHHTGGGBSCCEEE
T ss_pred             HHHHHHHHHcCCCccccEEE
Confidence            56677888898  8766554

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.79  E-value=2.2e-18  Score=130.27  Aligned_cols=133  Identities=19%  Similarity=0.241  Sum_probs=103.1

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      +....+.+.+..... .++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.++++        ..++++.+.|+
T Consensus        32 ~~~~~l~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~d~  100 (226)
T 3m33_A           32 PDPELTFDLWLSRLL-TPQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARAN--------APHADVYEWNG  100 (226)
T ss_dssp             SCTTHHHHHHHHHHC-CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCS
T ss_pred             CCHHHHHHHHHHhcC-CCCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------CCCceEEEcch
Confidence            334555665555333 3478999999999999999999854  999999999999999987        23689999999


Q ss_pred             -ccCCCC-CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688          124 -SRLPFA-SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE  201 (235)
Q Consensus       124 -~~~~~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (235)
                       ..+|++ .++||+|++.      .++..+++++.++|+|||.++.  ..                         ...+.
T Consensus       101 ~~~~~~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~--~~-------------------------~~~~~  147 (226)
T 3m33_A          101 KGELPAGLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLY--VG-------------------------PRLNV  147 (226)
T ss_dssp             CSSCCTTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEE--EE-------------------------SSSCC
T ss_pred             hhccCCcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEE--eC-------------------------CcCCH
Confidence             456776 7899999986      4667889999999999999991  11                         12355


Q ss_pred             HHHHHHHHHcCCceeEEEe
Q 026688          202 REIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~~~~~~  220 (235)
                      .++.+.++++||.++....
T Consensus       148 ~~~~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          148 PEVPERLAAVGWDIVAEDH  166 (226)
T ss_dssp             THHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHCCCeEEEEEe
Confidence            6777888888887766543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.79  E-value=2.4e-18  Score=128.95  Aligned_cols=126  Identities=17%  Similarity=0.233  Sum_probs=104.8

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .++.+|||+|||+|.++..++     .+++++|+++.                  ++.+...|+.+.+++.++||+|++.
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~~~~~~fD~v~~~  122 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVPLEDESVDVAVFC  122 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCCCCCCCEeEEEEe
Confidence            456899999999999988773     38999999986                  3557889998888777899999999


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      .++|+ .++..+++++.++|+|||.+++.++...                        +.+.+++.++++++||+++...
T Consensus       123 ~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~------------------------~~~~~~~~~~l~~~Gf~~~~~~  177 (215)
T 2zfu_A          123 LSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSR------------------------FEDVRTFLRAVTKLGFKIVSKD  177 (215)
T ss_dssp             SCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGGG------------------------CSCHHHHHHHHHHTTEEEEEEE
T ss_pred             hhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCC------------------------CCCHHHHHHHHHHCCCEEEEEe
Confidence            99974 8889999999999999999999876531                        1378999999999999988876


Q ss_pred             eeC-cEEEEEEecCC
Q 026688          220 RNR-GFVMFTATKPS  233 (235)
Q Consensus       220 ~~~-~~~~~~~~k~~  233 (235)
                      ..+ .+.+++++|..
T Consensus       178 ~~~~~~~~~~~~k~~  192 (215)
T 2zfu_A          178 LTNSHFFLFDFQKTG  192 (215)
T ss_dssp             CCSTTCEEEEEEECS
T ss_pred             cCCCeEEEEEEEecC
Confidence            443 56777887753

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.79  E-value=8.3e-18  Score=129.66  Aligned_cols=140  Identities=14%  Similarity=0.180  Sum_probs=109.6

Q ss_pred             HHHHHhhcCCC-CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-
Q 026688           50 FELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  127 (235)
Q Consensus        50 ~~~i~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-  127 (235)
                      ...+..++... ++.+|||+|||+|..+..++++++. +|+|+|+++.+++.|++++...+.  ..++++.++|+.+.+ 
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~--~~~v~~~~~D~~~~~~  113 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQL--EDQIEIIEYDLKKITD  113 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTC--TTTEEEECSCGGGGGG
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCC--cccEEEEECcHHHhhh
Confidence            34555666666 7899999999999999999998753 999999999999999999987765  447999999998864 


Q ss_pred             -CCCCceeEEEeccccccc-----C---------------ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHH
Q 026688          128 -FASSSIDAVHAGAAIHCW-----S---------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR  186 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~-----~---------------~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~  186 (235)
                       ++.++||+|+++..+...     .               +...+++.+.++|+|||.+++....               
T Consensus       114 ~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------  178 (259)
T 3lpm_A          114 LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP---------------  178 (259)
T ss_dssp             TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT---------------
T ss_pred             hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH---------------
Confidence             446899999997554332     1               1246899999999999999985432               


Q ss_pred             HhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          187 QNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                                  ....++...+++.||....+.
T Consensus       179 ------------~~~~~~~~~l~~~~~~~~~~~  199 (259)
T 3lpm_A          179 ------------ERLLDIIDIMRKYRLEPKRIQ  199 (259)
T ss_dssp             ------------TTHHHHHHHHHHTTEEEEEEE
T ss_pred             ------------HHHHHHHHHHHHCCCceEEEE
Confidence                        234677888899999876654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.79  E-value=2e-17  Score=125.23  Aligned_cols=131  Identities=13%  Similarity=0.069  Sum_probs=102.9

Q ss_pred             CCCCCeEEEecCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEE
Q 026688           59 PVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAV  136 (235)
Q Consensus        59 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i  136 (235)
                      ..++.+|||+||| +|.++..+++.. ..+|+++|+++.+++.|++++...+.    ++++.++|+... +++.++||+|
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~----~v~~~~~d~~~~~~~~~~~fD~I  127 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS----NVRLVKSNGGIIKGVVEGTFDVI  127 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC----CCEEEECSSCSSTTTCCSCEEEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC----CcEEEeCCchhhhhcccCceeEE
Confidence            3457899999999 999999999884 35999999999999999999887642    789999997433 3446899999


Q ss_pred             EecccccccCC-------------------hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCcee
Q 026688          137 HAGAAIHCWSS-------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT  197 (235)
Q Consensus       137 ~~~~~l~~~~~-------------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (235)
                      +++..+++..+                   ...+++++.++|+|||.+++..+...                        
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------------  183 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE------------------------  183 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH------------------------
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH------------------------
Confidence            99866654432                   26789999999999999999765421                        


Q ss_pred             ecCHHHHHHHHHHcCCceeEEE
Q 026688          198 FLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       198 ~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                       ....++.+.++++||.+..+.
T Consensus       184 -~~~~~~~~~l~~~g~~~~~~~  204 (230)
T 3evz_A          184 -KLLNVIKERGIKLGYSVKDIK  204 (230)
T ss_dssp             -HHHHHHHHHHHHTTCEEEEEE
T ss_pred             -hHHHHHHHHHHHcCCceEEEE
Confidence             134678899999999766654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.79  E-value=2.1e-19  Score=134.55  Aligned_cols=155  Identities=17%  Similarity=0.005  Sum_probs=99.6

Q ss_pred             HHHHHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ....+.+.+.+.. .++.+|||+|||+|.++..+++.++..+++++|+++.+++.+++++...+   . ++++.++|+.+
T Consensus        15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~d~~~   90 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG---A-VVDWAAADGIE   90 (215)
T ss_dssp             HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHHHHH
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC---C-ceEEEEcchHh
Confidence            4456667776654 56889999999999999999999887899999999999999999887653   2 68888899877


Q ss_pred             CCCCC-----CceeEEEecccccccCCh--------------------------HHHHHHHHHhccCCcEEEEEEeccCC
Q 026688          126 LPFAS-----SSIDAVHAGAAIHCWSSP--------------------------STGVAEISRVLRPGGVFVGTTYIVDG  174 (235)
Q Consensus       126 ~~~~~-----~~~D~i~~~~~l~~~~~~--------------------------~~~l~~~~~~L~pgG~li~~~~~~~~  174 (235)
                       +++.     ++||+|+++..+++..+.                          ..+++++.++|+|||.+++.....  
T Consensus        91 -~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--  167 (215)
T 4dzr_A           91 -WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH--  167 (215)
T ss_dssp             -HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT--
T ss_pred             -hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC--
Confidence             4444     899999997554332211                          567889999999999955444322  


Q ss_pred             CcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH--HcCCceeEEEe--eCcEEEEEEecC
Q 026688          175 PFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR--ACGLVDFKCTR--NRGFVMFTATKP  232 (235)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~Gf~~~~~~~--~~~~~~~~~~k~  232 (235)
                                              ...+.+.++++  ++||..+.+..  .+...+++++|+
T Consensus       168 ------------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~  205 (215)
T 4dzr_A          168 ------------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE  205 (215)
T ss_dssp             ------------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred             ------------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence                                    24567888888  89997766643  334455666654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.78  E-value=3.2e-18  Score=130.84  Aligned_cols=149  Identities=14%  Similarity=0.050  Sum_probs=109.4

Q ss_pred             CCCeEEEecCCC--chHHHHH-HHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC----C--CC
Q 026688           61 LGGNIIDASCGS--GLFSRIF-AKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----A--SS  131 (235)
Q Consensus        61 ~~~~vLdiG~G~--G~~~~~l-~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~----~--~~  131 (235)
                      ...+|||+|||+  +.++..+ .+..|.++|+++|.|+.|++.|++++...+   ..++.++++|+.+.+.    +  ..
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~---~~~~~~v~aD~~~~~~~l~~~~~~~  154 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP---EGRTAYVEADMLDPASILDAPELRD  154 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS---SSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC---CCcEEEEEecccChhhhhccccccc
Confidence            457999999997  4344444 445678899999999999999999886532   3469999999987420    1  23


Q ss_pred             cee-----EEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHH
Q 026688          132 SID-----AVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  203 (235)
Q Consensus       132 ~~D-----~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (235)
                      .||     .|+++.+|||+++.   ..+++++.+.|+|||+|++++...+..   ......+...+........+++.++
T Consensus       155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~---p~~~~~~~~~~~~~g~p~~~rs~~e  231 (277)
T 3giw_A          155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFA---PQEVGRVAREYAARNMPMRLRTHAE  231 (277)
T ss_dssp             TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTS---HHHHHHHHHHHHHTTCCCCCCCHHH
T ss_pred             ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCC---HHHHHHHHHHHHhcCCCCccCCHHH
Confidence            455     68899999999884   579999999999999999998876421   1122333333333334467889999


Q ss_pred             HHHHHHHcCCceeE
Q 026688          204 IEDLCRACGLVDFK  217 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~  217 (235)
                      +..+|.  ||++++
T Consensus       232 i~~~f~--Glelve  243 (277)
T 3giw_A          232 AEEFFE--GLELVE  243 (277)
T ss_dssp             HHHTTT--TSEECT
T ss_pred             HHHHhC--CCcccC
Confidence            999995  998543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.78  E-value=5.9e-18  Score=126.71  Aligned_cols=107  Identities=17%  Similarity=0.132  Sum_probs=89.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~  138 (235)
                      ++.+|||+|||+|.++..+++..|...++|+|+|+.+++.|++++...+   ..++.++++|+.+++  ++.++||.|++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~---~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            4679999999999999999999888899999999999999999987765   357999999998764  56788999987


Q ss_pred             cccccccCC--------hHHHHHHHHHhccCCcEEEEEEe
Q 026688          139 GAAIHCWSS--------PSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       139 ~~~l~~~~~--------~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .....+...        ...+++++.++|+|||.+++.+.
T Consensus       115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td  154 (213)
T 2fca_A          115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  154 (213)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence            654332221        25789999999999999998764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.77  E-value=1.1e-17  Score=129.26  Aligned_cols=109  Identities=10%  Similarity=0.057  Sum_probs=91.8

Q ss_pred             hhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688           55 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  134 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  134 (235)
                      .++...++.+|||||||+|.++..++.+.+.++|+++|+|+.+++.|++++...+.   .++++.++|+.+++  .++||
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl---~~v~~v~gDa~~l~--d~~FD  190 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV---DGVNVITGDETVID--GLEFD  190 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC---CSEEEEESCGGGGG--GCCCS
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC---CCeEEEECchhhCC--CCCcC
Confidence            45667779999999999998776555554567999999999999999999887653   58999999998865  68899


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +|++...   .++..++++++.++|+|||.+++....
T Consensus       191 vV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          191 VLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             EEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             EEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            9998654   467889999999999999999987643

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.77  E-value=1.8e-17  Score=123.72  Aligned_cols=144  Identities=14%  Similarity=0.068  Sum_probs=100.3

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----CCCCCce
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSI  133 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~  133 (235)
                      ...++.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.+.+....     ..++.++.+|+...    ++. ++|
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-----~~~v~~~~~d~~~~~~~~~~~-~~f  127 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----RNNIIPLLFDASKPWKYSGIV-EKV  127 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----CSSEEEECSCTTCGGGTTTTC-CCE
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-----CCCeEEEEcCCCCchhhcccc-cce
Confidence            44567899999999999999999886556999999999988766665543     23688888888763    343 789


Q ss_pred             eEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH----HHHH
Q 026688          134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE----DLCR  209 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~  209 (235)
                      |+|++.. ..+ .+...+++++.++|||||.+++.......                     ....+++++.    +.++
T Consensus       128 D~V~~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------------~~~~~~~~~~~~~~~~l~  184 (210)
T 1nt2_A          128 DLIYQDI-AQK-NQIEILKANAEFFLKEKGEVVIMVKARSI---------------------DSTAEPEEVFKSVLKEME  184 (210)
T ss_dssp             EEEEECC-CST-THHHHHHHHHHHHEEEEEEEEEEEEHHHH---------------------CTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEec-cCh-hHHHHHHHHHHHHhCCCCEEEEEEecCCc---------------------cccCCHHHHHHHHHHHHH
Confidence            9999873 221 22334589999999999999998543200                     0012333332    2378


Q ss_pred             HcCCceeEEEeeC----cEEEEEEec
Q 026688          210 ACGLVDFKCTRNR----GFVMFTATK  231 (235)
Q Consensus       210 ~~Gf~~~~~~~~~----~~~~~~~~k  231 (235)
                      ++ |++++.....    ...+++++|
T Consensus       185 ~~-f~~~~~~~~~p~~~~h~~~~~~~  209 (210)
T 1nt2_A          185 GD-FKIVKHGSLMPYHRDHIFIHAYR  209 (210)
T ss_dssp             TT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred             hh-cEEeeeecCCCCCCCcEEEEEEc
Confidence            88 9988887552    345666664

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.77  E-value=8.2e-18  Score=123.15  Aligned_cols=108  Identities=19%  Similarity=0.154  Sum_probs=84.4

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-CCCCceeEEEe
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHA  138 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i~~  138 (235)
                      .++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.|++++...+   ..++++.+.+...++ +..++||+|++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~~~~~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLG---IENTELILDGHENLDHYVREPIRAAIF   95 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHT---CCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence            34789999999999999999988  4599999999999999999988765   257899888777643 34678999998


Q ss_pred             cc-cccc--------cCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          139 GA-AIHC--------WSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       139 ~~-~l~~--------~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +. .+++        ..+...+++++.++|+|||.+++..+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  138 (185)
T 3mti_A           96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG  138 (185)
T ss_dssp             EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence            73 2222        1223477899999999999999987654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.77  E-value=1.1e-17  Score=132.38  Aligned_cols=153  Identities=18%  Similarity=0.170  Sum_probs=112.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCC----CCCCCeeEEecccccCC----CC--C
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN----FPKENFLLVRADISRLP----FA--S  130 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~~~d~~~~~----~~--~  130 (235)
                      ++.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++....+.    ....++.+.++|+...+    ++  .
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            4789999999999999999875 356999999999999999998765310    00336899999998865    43  3


Q ss_pred             CceeEEEeccccccc-CC---hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHh-------------H----
Q 026688          131 SSIDAVHAGAAIHCW-SS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-------------M----  189 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~-~~---~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~-------------~----  189 (235)
                      ++||+|++..++|++ .+   +..+++++.++|+|||.+++.++..+.      +...+...             +    
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~------l~~~~~~~~~~~~~~~~~~~~f~~~~  186 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFE------LIRRLEASETESFGNEIYTVKFQKKG  186 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH------HHHHHTTSSSSEEECSSEEEEESCSS
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHH------HHHHHHhhccCccCCeeEEEEeCCCC
Confidence            589999999999887 44   358999999999999999999886421      00100000             0    


Q ss_pred             --------------hhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          190 --------------MQISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       190 --------------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                                    ..........+.+++.+++++.||+++....
T Consensus       187 ~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~  231 (313)
T 3bgv_A          187 DYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKT  231 (313)
T ss_dssp             CCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEE
T ss_pred             CCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecC
Confidence                          0000112346789999999999999887763

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.77  E-value=2.6e-18  Score=127.12  Aligned_cols=111  Identities=14%  Similarity=0.227  Sum_probs=90.6

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-CCCCceeEEE
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVH  137 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i~  137 (235)
                      .++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...+.  ..++++.++|+.+.+ ...++||+|+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL--IDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC--GGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCeEEEECCHHHHhhhccCCceEEE
Confidence            447899999999999999999873 556999999999999999999887653  357999999998764 4557899999


Q ss_pred             ecccccc------cC---ChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          138 AGAAIHC------WS---SPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       138 ~~~~l~~------~~---~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ++..+..      ..   +...+++++.++|+|||.+++..+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence            8865511      11   23478999999999999999988654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.76  E-value=6.6e-18  Score=124.14  Aligned_cols=126  Identities=16%  Similarity=0.124  Sum_probs=100.8

Q ss_pred             CCCHHHHHHHHhhcCC---CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688           44 PGPEKEFELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  120 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (235)
                      |......+.+.+.+..   .++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++...+.   .++++.+
T Consensus        24 p~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~   99 (189)
T 3p9n_A           24 PTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEALGL---SGATLRR   99 (189)
T ss_dssp             --CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHHTC---SCEEEEE
T ss_pred             cCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCC---CceEEEE
Confidence            4456666666665532   457899999999999999887764 35899999999999999999887652   4799999


Q ss_pred             cccccCC--CCCCceeEEEeccccccc-CChHHHHHHHHH--hccCCcEEEEEEeccC
Q 026688          121 ADISRLP--FASSSIDAVHAGAAIHCW-SSPSTGVAEISR--VLRPGGVFVGTTYIVD  173 (235)
Q Consensus       121 ~d~~~~~--~~~~~~D~i~~~~~l~~~-~~~~~~l~~~~~--~L~pgG~li~~~~~~~  173 (235)
                      +|+.+.+  ++.++||+|+++..+++. .+...+++.+.+  +|+|||.+++......
T Consensus       100 ~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          100 GAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             SCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             ccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            9998753  346789999999887764 556789999999  9999999999887653

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.76  E-value=8.3e-18  Score=125.29  Aligned_cols=115  Identities=17%  Similarity=0.155  Sum_probs=93.1

Q ss_pred             HHHHHHHHhhcCCC---CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           47 EKEFELMKGYLKPV---LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        47 ~~~~~~i~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      ....+.+.+.+...   ++.+|||+|||+|..+..+++..+..+++++|+++.+++.+++++...+   ..++++...|+
T Consensus        48 ~~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~  124 (207)
T 1jsx_A           48 EMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRV  124 (207)
T ss_dssp             CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCT
T ss_pred             HHHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEecch
Confidence            34455555544321   3689999999999999999998777899999999999999999987765   33599999999


Q ss_pred             ccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .+.+ +.++||+|++..    +.+...+++.+.++|+|||.+++..
T Consensus       125 ~~~~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~  165 (207)
T 1jsx_A          125 EEFP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             TTSC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hhCC-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            8765 457899999754    3556789999999999999999864

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.76  E-value=1.8e-17  Score=128.95  Aligned_cols=140  Identities=20%  Similarity=0.214  Sum_probs=111.8

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|++++...+.  ..++++...|+.
T Consensus        97 ~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~  174 (277)
T 1o54_A           97 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL--IERVTIKVRDIS  174 (277)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC--GGGEEEECCCGG
T ss_pred             CHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHH
Confidence            4455567777777777899999999999999999998 6677999999999999999999877543  247899999998


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHH
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI  204 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (235)
                      +. ++.++||+|++     +.+++..+++++.++|+|||.+++..+...                          ...++
T Consensus       175 ~~-~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~--------------------------~~~~~  222 (277)
T 1o54_A          175 EG-FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTN--------------------------QVQET  222 (277)
T ss_dssp             GC-CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH--------------------------HHHHH
T ss_pred             Hc-ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH--------------------------HHHHH
Confidence            75 45678999997     456778899999999999999999875421                          12455


Q ss_pred             HHHHHHcCCceeEEE
Q 026688          205 EDLCRACGLVDFKCT  219 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~  219 (235)
                      .+.+++.||..++..
T Consensus       223 ~~~l~~~gf~~~~~~  237 (277)
T 1o54_A          223 LKKLQELPFIRIEVW  237 (277)
T ss_dssp             HHHHHHSSEEEEEEE
T ss_pred             HHHHHHCCCceeEEE
Confidence            666777888765554

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.76  E-value=2.4e-18  Score=129.78  Aligned_cols=153  Identities=13%  Similarity=0.094  Sum_probs=99.5

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCC-HHHHHHH---HHHhhhcCCCCCCCeeEEecccccCCCC-CCcee
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS-ENMLKQC---YEFVQQESNFPKENFLLVRADISRLPFA-SSSID  134 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s-~~~~~~a---~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D  134 (235)
                      .++.+|||||||+|.++..+++..+...|+|+|+| +.+++.|   +++....+   ..++.+.++|+..+|.. .+.+|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~---~~~v~~~~~d~~~l~~~~~d~v~   99 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG---LSNVVFVIAAAESLPFELKNIAD   99 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC---CSSEEEECCBTTBCCGGGTTCEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEcCHHHhhhhccCeEE
Confidence            34789999999999999999987778899999999 7777776   66665544   35799999999887521 14455


Q ss_pred             EEEecccccc-----cCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCC-ceeecCHHHHHHHH
Q 026688          135 AVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG-SYTFLSEREIEDLC  208 (235)
Q Consensus       135 ~i~~~~~l~~-----~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l  208 (235)
                      .|.++....+     ..+...+++++.++|||||.+++.....+.. ...++..      ...+. ...++..+++...+
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~el~~~l  172 (225)
T 3p2e_A          100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EEAEIKK------RGLPLLSKAYFLSEQYKAEL  172 (225)
T ss_dssp             EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC---------------------CCHHHHHSHHHHHHH
T ss_pred             EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hhchhhh------cCCCCCChhhcchHHHHHHH
Confidence            5554432211     1234578999999999999999954433220 0011000      00000 01112233599999


Q ss_pred             HHcCCceeEEEeeC
Q 026688          209 RACGLVDFKCTRNR  222 (235)
Q Consensus       209 ~~~Gf~~~~~~~~~  222 (235)
                      +++||++......+
T Consensus       173 ~~aGf~v~~~~~~~  186 (225)
T 3p2e_A          173 SNSGFRIDDVKELD  186 (225)
T ss_dssp             HHHTCEEEEEEEEC
T ss_pred             HHcCCCeeeeeecC
Confidence            99999988776443

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.76  E-value=7.7e-18  Score=122.34  Aligned_cols=117  Identities=16%  Similarity=0.143  Sum_probs=95.1

Q ss_pred             cCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC---CCCce
Q 026688           57 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSI  133 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~  133 (235)
                      +...++.+|||+|||.                +++|+|+.|++.|+++..       .++++.++|+.++++   +.++|
T Consensus         8 ~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~f   64 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESSF   64 (176)
T ss_dssp             TTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSCE
T ss_pred             cCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCCE
Confidence            3455689999999986                139999999999998853       248899999998776   67899


Q ss_pred             eEEEeccccccc-CChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcC
Q 026688          134 DAVHAGAAIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  212 (235)
Q Consensus       134 D~i~~~~~l~~~-~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  212 (235)
                      |+|++..+++|+ +++.+++++++++|||||.+++..+......                 ......+.+++.++|+++|
T Consensus        65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~aG  127 (176)
T 2ld4_A           65 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD-----------------NNSKVKTASKLCSALTLSG  127 (176)
T ss_dssp             EEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC-----------------SSSSSCCHHHHHHHHHHTT
T ss_pred             eEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc-----------------cccccCCHHHHHHHHHHCC
Confidence            999999999999 8899999999999999999999665432100                 0222357899999999999


Q ss_pred             C
Q 026688          213 L  213 (235)
Q Consensus       213 f  213 (235)
                      |
T Consensus       128 f  128 (176)
T 2ld4_A          128 L  128 (176)
T ss_dssp             C
T ss_pred             C
Confidence            9

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.76  E-value=2.7e-17  Score=124.82  Aligned_cols=153  Identities=13%  Similarity=0.071  Sum_probs=106.6

Q ss_pred             hcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc---CCCCCC
Q 026688           56 YLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASS  131 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~  131 (235)
                      .+...++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+.+.....     .++.+..+|+.+   ++...+
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~  146 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIA  146 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCC
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCC
Confidence            4445567899999999999999999873 5569999999999888877766552     478999999987   344467


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHc
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  211 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  211 (235)
                      +||+|++...  .......++.++.++|+|||.+++........ ...+.              ...+. .+ .++|+++
T Consensus       147 ~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~-~~~~~--------------~~~~~-~~-~~~l~~~  207 (233)
T 2ipx_A          147 MVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIKANCID-STASA--------------EAVFA-SE-VKKMQQE  207 (233)
T ss_dssp             CEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHC-SSSCH--------------HHHHH-HH-HHTTGGG
T ss_pred             cEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcccccc-cCCCH--------------HHHHH-HH-HHHHHHC
Confidence            8999998544  11112456889999999999999965432100 00000              00111 23 4888999


Q ss_pred             CCceeEEEeeCc----EEEEEEecC
Q 026688          212 GLVDFKCTRNRG----FVMFTATKP  232 (235)
Q Consensus       212 Gf~~~~~~~~~~----~~~~~~~k~  232 (235)
                      ||++++......    ..+++++++
T Consensus       208 Gf~~~~~~~~~~~~~~~~~v~~~~~  232 (233)
T 2ipx_A          208 NMKPQEQLTLEPYERDHAVVVGVYR  232 (233)
T ss_dssp             TEEEEEEEECTTTSSSEEEEEEEEC
T ss_pred             CCceEEEEecCCccCCcEEEEEEeC
Confidence            999888654332    566777664

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.76  E-value=3.5e-17  Score=122.17  Aligned_cols=115  Identities=17%  Similarity=0.098  Sum_probs=100.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .......+.+.+...++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.+++++...+   ..++++..+|..+
T Consensus        62 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~--~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~  136 (210)
T 3lbf_A           62 QPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV--QHVCSVERIKGLQWQARRRLKNLD---LHNVSTRHGDGWQ  136 (210)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGG
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHcC---CCceEEEECCccc
Confidence            55667788888887888999999999999999999985  499999999999999999988765   3479999999988


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ...+.++||+|++..+++|+++      .+.++|+|||.+++....
T Consensus       137 ~~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          137 GWQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CCGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             CCccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence            6555688999999999998875      588999999999998776

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.75  E-value=6.5e-17  Score=120.91  Aligned_cols=137  Identities=9%  Similarity=0.044  Sum_probs=110.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      -++.+.+++.+  +.+|||+|||+|.++..+++.++..+|+++|+++.+++.|++++..+++  ..++++..+|..+...
T Consensus        11 RL~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl--~~~I~~~~gD~l~~~~   86 (230)
T 3lec_A           11 RLQKVANYVPK--GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL--TSKIDVRLANGLSAFE   86 (230)
T ss_dssp             HHHHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCC
T ss_pred             HHHHHHHhCCC--CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhhccc
Confidence            34566666765  6899999999999999999998877899999999999999999998875  4579999999987654


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      +.+.||+|+.......  -...++....+.|+++|++++....                            ..+.++++|
T Consensus        87 ~~~~~D~IviaGmGg~--lI~~IL~~~~~~l~~~~~lIlqp~~----------------------------~~~~lr~~L  136 (230)
T 3lec_A           87 EADNIDTITICGMGGR--LIADILNNDIDKLQHVKTLVLQPNN----------------------------REDDLRKWL  136 (230)
T ss_dssp             GGGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESS----------------------------CHHHHHHHH
T ss_pred             cccccCEEEEeCCchH--HHHHHHHHHHHHhCcCCEEEEECCC----------------------------ChHHHHHHH
Confidence            4447999886544331  1246788889999999998876532                            357889999


Q ss_pred             HHcCCceeEEE
Q 026688          209 RACGLVDFKCT  219 (235)
Q Consensus       209 ~~~Gf~~~~~~  219 (235)
                      .++||.+++..
T Consensus       137 ~~~Gf~i~~E~  147 (230)
T 3lec_A          137 AANDFEIVAED  147 (230)
T ss_dssp             HHTTEEEEEEE
T ss_pred             HHCCCEEEEEE
Confidence            99999987765

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.75  E-value=6.9e-17  Score=130.42  Aligned_cols=124  Identities=15%  Similarity=0.123  Sum_probs=99.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ....+.+++.+...++.+|||+|||+|.++..+++.+|..+|+++|+|+.+++.+++++..++.....++++...|+.+ 
T Consensus       208 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-  286 (375)
T 4dcm_A          208 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-  286 (375)
T ss_dssp             CHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-
T ss_pred             cHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-
Confidence            3445667888877777999999999999999999998888999999999999999999887653212357889999987 


Q ss_pred             CCCCCceeEEEecccccccCC---h--HHHHHHHHHhccCCcEEEEEEec
Q 026688          127 PFASSSIDAVHAGAAIHCWSS---P--STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~---~--~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +++.++||+|+++..+++...   .  .++++++.++|+|||.++++...
T Consensus       287 ~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          287 GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            455679999999988876322   2  36899999999999999997644

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.75  E-value=2.1e-17  Score=126.50  Aligned_cols=117  Identities=12%  Similarity=0.081  Sum_probs=89.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      ...+.+++.+...++.+|||+|||+|.++..+++++.  +|+++|+|+.|++.|++++...    .....+...+.....
T Consensus        32 ~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~  105 (261)
T 3iv6_A           32 SDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPK  105 (261)
T ss_dssp             CHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCG
T ss_pred             HHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhc----cceeeeeeccccccc
Confidence            3456777778777789999999999999999999875  9999999999999999987542    112222222220011


Q ss_pred             CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEec
Q 026688          128 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ...++||+|+++.+++|+...  ..+++++.++| |||.++++...
T Consensus       106 ~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          106 ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            124689999999999998644  57899999999 99999998764

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.74  E-value=1.1e-16  Score=124.47  Aligned_cols=140  Identities=15%  Similarity=0.099  Sum_probs=109.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      .....+.+.+.  ++.+|||+|||+|.++..+++.++. +|+|+|+|+.+++.|++++..++.  ..++++.++|+.+.+
T Consensus       114 ~~~~~l~~~~~--~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~--~~~v~~~~~D~~~~~  188 (278)
T 2frn_A          114 KERVRMAKVAK--PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFP  188 (278)
T ss_dssp             HHHHHHHHHCC--TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCC
T ss_pred             HHHHHHHHhCC--CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCC--CceEEEEECCHHHhc
Confidence            34455555554  3789999999999999999998764 799999999999999999987764  345899999998876


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  207 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (235)
                      . .++||+|++...    .....+++++.++|+|||.+++.+......                    ......+++.+.
T Consensus       189 ~-~~~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--------------------~~~~~~~~i~~~  243 (278)
T 2frn_A          189 G-ENIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL--------------------MPREPFETFKRI  243 (278)
T ss_dssp             C-CSCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG--------------------TTTTTHHHHHHH
T ss_pred             c-cCCccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeecccc--------------------ccccHHHHHHHH
Confidence            5 678999998533    334678999999999999999988764210                    001245678889


Q ss_pred             HHHcCCceeE
Q 026688          208 CRACGLVDFK  217 (235)
Q Consensus       208 l~~~Gf~~~~  217 (235)
                      ++++|+....
T Consensus       244 ~~~~G~~~~~  253 (278)
T 2frn_A          244 TKEYGYDVEK  253 (278)
T ss_dssp             HHHTTCEEEE
T ss_pred             HHHcCCeeEE
Confidence            9999998655

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.74  E-value=2.3e-16  Score=118.71  Aligned_cols=162  Identities=10%  Similarity=0.022  Sum_probs=109.4

Q ss_pred             CHHHHHHHHhhcC---CCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           46 PEKEFELMKGYLK---PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        46 ~~~~~~~i~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      ..+....++..+.   ..++.+|||+|||+|..+..+++. ++.++|+++|+++.+++...+....     ..++.++.+
T Consensus        58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----r~nv~~i~~  132 (232)
T 3id6_C           58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----RPNIFPLLA  132 (232)
T ss_dssp             TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----CTTEEEEEC
T ss_pred             HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCeEEEEc
Confidence            4455666666554   677899999999999999999886 5677999999999987655544433     247899999


Q ss_pred             ccccCC---CCCCceeEEEecccccccCChHHH-HHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCcee
Q 026688          122 DISRLP---FASSSIDAVHAGAAIHCWSSPSTG-VAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT  197 (235)
Q Consensus       122 d~~~~~---~~~~~~D~i~~~~~l~~~~~~~~~-l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (235)
                      |+....   ...++||+|++....   ++.... ...+.++|||||.++++..........               ... 
T Consensus       133 Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~---------------~~~-  193 (232)
T 3id6_C          133 DARFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTK---------------DPK-  193 (232)
T ss_dssp             CTTCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-------C---------------CSS-
T ss_pred             ccccchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCC---------------CHH-
Confidence            987532   123689999987554   344444 455666999999999985432100000               000 


Q ss_pred             ecCHHHHHHHHHHcCCceeEEEeeC----cEEEEEEecC
Q 026688          198 FLSEREIEDLCRACGLVDFKCTRNR----GFVMFTATKP  232 (235)
Q Consensus       198 ~~~~~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~k~  232 (235)
                       -..++....|+++||++++.....    ...+++++|+
T Consensus       194 -e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~~  231 (232)
T 3id6_C          194 -EIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYK  231 (232)
T ss_dssp             -SSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEEC
T ss_pred             -HHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEeC
Confidence             012445677888999998887542    3577777764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.74  E-value=4e-17  Score=128.45  Aligned_cols=151  Identities=11%  Similarity=0.104  Sum_probs=109.6

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEecccccCCC--CCCceeEE
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPF--ASSSIDAV  136 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~~~--~~~~~D~i  136 (235)
                      ..+.+|||+|||+|..+..+++..+..+|+++|+|+.+++.|++++... ......++++..+|+.+...  +.++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            3468999999999999999998766679999999999999999987421 00114589999999977542  36789999


Q ss_pred             EecccccccCCh----HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcC
Q 026688          137 HAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  212 (235)
Q Consensus       137 ~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  212 (235)
                      ++.....+.+..    ..+++++.++|+|||.+++......        .              ......++.+.++++|
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~--------~--------------~~~~~~~~~~~l~~~G  231 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW--------L--------------DLELIEKMSRFIRETG  231 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT--------T--------------CHHHHHHHHHHHHHHT
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc--------c--------------chHHHHHHHHHHHhCC
Confidence            997666544332    5889999999999999998754320        0              0123567888999999


Q ss_pred             CceeEEEe-------eCcEEEEEEecC
Q 026688          213 LVDFKCTR-------NRGFVMFTATKP  232 (235)
Q Consensus       213 f~~~~~~~-------~~~~~~~~~~k~  232 (235)
                      |..+....       .+.+.+++++|.
T Consensus       232 F~~v~~~~~~vP~yp~g~w~f~~as~~  258 (304)
T 3bwc_A          232 FASVQYALMHVPTYPCGSIGTLVCSKK  258 (304)
T ss_dssp             CSEEEEEECCCTTSTTSCCEEEEEESS
T ss_pred             CCcEEEEEeecccccCcceEEEEEeCC
Confidence            98877653       234556667763

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.74  E-value=2.2e-16  Score=119.32  Aligned_cols=160  Identities=11%  Similarity=0.088  Sum_probs=112.0

Q ss_pred             CHHHHHHHHh---hcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           46 PEKEFELMKG---YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        46 ~~~~~~~i~~---~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      .......+..   .+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.+++++...     .++++.++
T Consensus        55 ~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-----~~v~~~~~  129 (227)
T 1g8a_A           55 RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILG  129 (227)
T ss_dssp             TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEEC
T ss_pred             chhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-----CCCEEEEc
Confidence            3455566643   333566889999999999999999987 45569999999999999999887642     47999999


Q ss_pred             ccccCC---CCCCceeEEEecccccccCCh-HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCcee
Q 026688          122 DISRLP---FASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT  197 (235)
Q Consensus       122 d~~~~~---~~~~~~D~i~~~~~l~~~~~~-~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (235)
                      |+.+..   ...++||+|++...   .++. ..+++++.++|+|||.+++........ ...+               ..
T Consensus       130 d~~~~~~~~~~~~~~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~---------------~~  190 (227)
T 1g8a_A          130 DATKPEEYRALVPKVDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSID-VTKE---------------PE  190 (227)
T ss_dssp             CTTCGGGGTTTCCCEEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTC-TTSC---------------HH
T ss_pred             cCCCcchhhcccCCceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCC-CCCC---------------hh
Confidence            997632   12358999997654   2233 345999999999999999983322111 0001               01


Q ss_pred             ecCHHHHHHHHHHcCCceeEEEeeCc----EEEEEEec
Q 026688          198 FLSEREIEDLCRACGLVDFKCTRNRG----FVMFTATK  231 (235)
Q Consensus       198 ~~~~~~~~~~l~~~Gf~~~~~~~~~~----~~~~~~~k  231 (235)
                      .+..+++..+ .++ |++++......    ..+++++|
T Consensus       191 ~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          191 QVFREVEREL-SEY-FEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             HHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEEEEC
T ss_pred             hhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEEEEe
Confidence            2345677776 777 99888765432    56677765

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.74  E-value=1.3e-16  Score=122.97  Aligned_cols=117  Identities=13%  Similarity=0.075  Sum_probs=93.9

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh---cCCCCCCCeeEEecccccC--
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ESNFPKENFLLVRADISRL--  126 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~~~~~~~~~~~~d~~~~--  126 (235)
                      .+..++...++.+|||+|||+|.++..++++.+..+|+++|+++.+++.|++++..   .+.  ..++++++.|+.+.  
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l--~~~v~~~~~D~~~~~~  104 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF--SARIEVLEADVTLRAK  104 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT--GGGEEEEECCTTCCHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC--cceEEEEeCCHHHHhh
Confidence            45556666667899999999999999999998778999999999999999999876   543  33699999999876  


Q ss_pred             -----CCCCCceeEEEeccccccc------------------CChHHHHHHHHHhccCCcEEEEEEe
Q 026688          127 -----PFASSSIDAVHAGAAIHCW------------------SSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 -----~~~~~~~D~i~~~~~l~~~------------------~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                           +++.++||+|+++-.+...                  .....+++.+.++|+|||.+++...
T Consensus       105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence                 2456789999998433221                  2346889999999999999998654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.74  E-value=1.5e-17  Score=124.87  Aligned_cols=108  Identities=15%  Similarity=0.097  Sum_probs=90.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C--CCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~i~  137 (235)
                      ...+|||||||+|.++..+++..|...|+|+|+++.+++.|++++...+   ..++.++++|+.+. +  ++.++||.|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~---l~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG---LSNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT---CSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHcCCCChheEE
Confidence            4679999999999999999999988899999999999999999987765   35799999998774 3  5678999999


Q ss_pred             ecccccccCCh--------HHHHHHHHHhccCCcEEEEEEec
Q 026688          138 AGAAIHCWSSP--------STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       138 ~~~~l~~~~~~--------~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +++...+....        ..+++++.++|+|||.+++.+..
T Consensus       111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~  152 (218)
T 3dxy_A          111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW  152 (218)
T ss_dssp             EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence            87554433222        15899999999999999998754

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.73  E-value=7.2e-17  Score=123.46  Aligned_cols=129  Identities=10%  Similarity=-0.086  Sum_probs=103.2

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC---CCceeEE
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAV  136 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~i  136 (235)
                      .++.+|||+|||+|..+..++...+..+|+++|+++.+++.+++++...+.   .+++++++|+++.+..   .++||+|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l---~~v~~~~~d~~~~~~~~~~~~~fD~I  155 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL---KGARALWGRAEVLAREAGHREAYARA  155 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CceEEEECcHHHhhcccccCCCceEE
Confidence            457899999999999999999988888999999999999999999887763   4699999999886532   3789999


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCcee
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF  216 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  216 (235)
                      ++..    +.+...+++.+.++|+|||.+++......        .                -...++...++..||.+.
T Consensus       156 ~s~a----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~--------~----------------~e~~~~~~~l~~~G~~~~  207 (249)
T 3g89_A          156 VARA----VAPLCVLSELLLPFLEVGGAAVAMKGPRV--------E----------------EELAPLPPALERLGGRLG  207 (249)
T ss_dssp             EEES----SCCHHHHHHHHGGGEEEEEEEEEEECSCC--------H----------------HHHTTHHHHHHHHTEEEE
T ss_pred             EECC----cCCHHHHHHHHHHHcCCCeEEEEEeCCCc--------H----------------HHHHHHHHHHHHcCCeEE
Confidence            9854    34567899999999999999987553210        0                112356677788899877


Q ss_pred             EEE
Q 026688          217 KCT  219 (235)
Q Consensus       217 ~~~  219 (235)
                      .+.
T Consensus       208 ~~~  210 (249)
T 3g89_A          208 EVL  210 (249)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.73  E-value=1.5e-16  Score=123.87  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=101.5

Q ss_pred             CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhc-C-CCCCCCeeEEec
Q 026688           45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE-S-NFPKENFLLVRA  121 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~-~-~~~~~~~~~~~~  121 (235)
                      ........+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|++++... + .  ..++++...
T Consensus        83 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~--~~~v~~~~~  160 (280)
T 1i9g_A           83 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP--PDNWRLVVS  160 (280)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC--CTTEEEECS
T ss_pred             ecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC--CCcEEEEEC
Confidence            34556677888888777899999999999999999985 55679999999999999999988765 2 2  347999999


Q ss_pred             ccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       122 d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      |+.+.+++.++||+|++     +.+++..+++++.++|+|||.+++..+.
T Consensus       161 d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          161 DLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             CGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             chHhcCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            99887766788999997     4567788999999999999999998765

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.73  E-value=1.8e-16  Score=118.28  Aligned_cols=135  Identities=11%  Similarity=0.072  Sum_probs=107.1

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF  128 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~  128 (235)
                      ++.+.+++..  +.+|||+|||+|.++..+++.++..+|+++|+++.+++.|++++..++.  ..++++..+|..+ ++.
T Consensus         6 L~~l~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~i~~~~~d~l~~l~~   81 (225)
T 3kr9_A            6 LELVASFVSQ--GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL--KEKIQVRLANGLAAFEE   81 (225)
T ss_dssp             HHHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG
T ss_pred             HHHHHHhCCC--CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEECchhhhccc
Confidence            4556666664  6899999999999999999998878999999999999999999998875  4479999999965 331


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                       ...||+|+....-..  -...++..+.+.|+|+|++++....                            ..+.++++|
T Consensus        82 -~~~~D~IviaG~Gg~--~i~~Il~~~~~~L~~~~~lVlq~~~----------------------------~~~~vr~~L  130 (225)
T 3kr9_A           82 -TDQVSVITIAGMGGR--LIARILEEGLGKLANVERLILQPNN----------------------------REDDLRIWL  130 (225)
T ss_dssp             -GGCCCEEEEEEECHH--HHHHHHHHTGGGCTTCCEEEEEESS----------------------------CHHHHHHHH
T ss_pred             -CcCCCEEEEcCCChH--HHHHHHHHHHHHhCCCCEEEEECCC----------------------------CHHHHHHHH
Confidence             236999987544221  1357889999999999998885432                            356788999


Q ss_pred             HHcCCceeEEE
Q 026688          209 RACGLVDFKCT  219 (235)
Q Consensus       209 ~~~Gf~~~~~~  219 (235)
                      .++||.++...
T Consensus       131 ~~~Gf~i~~e~  141 (225)
T 3kr9_A          131 QDHGFQIVAES  141 (225)
T ss_dssp             HHTTEEEEEEE
T ss_pred             HHCCCEEEEEE
Confidence            99999987764

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.73  E-value=1.3e-16  Score=119.53  Aligned_cols=118  Identities=15%  Similarity=0.124  Sum_probs=97.6

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .......+.+.+...++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++...+   ..++.+...|+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~  138 (215)
T 2yxe_A           62 AIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG---YDNVIVIVGDGT  138 (215)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEESCGG
T ss_pred             cHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcc
Confidence            45566777777777778999999999999999999876 44699999999999999999887654   346899999986


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ......++||+|++..+++|++      +++.++|+|||.+++.....
T Consensus       139 ~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          139 LGYEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             GCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred             cCCCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence            5322357899999999999876      47899999999999987643

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.73  E-value=1.3e-16  Score=120.16  Aligned_cols=137  Identities=11%  Similarity=0.056  Sum_probs=108.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      .++.+.+++.+  +.+|||+|||+|.++..+++.++..+|+++|+++.+++.|++++..++.  ..++++..+|..+...
T Consensus        11 RL~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~I~v~~gD~l~~~~   86 (244)
T 3gnl_A           11 RLEKVASYITK--NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL--TEQIDVRKGNGLAVIE   86 (244)
T ss_dssp             HHHHHHTTCCS--SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCC
T ss_pred             HHHHHHHhCCC--CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEecchhhccC
Confidence            45566777765  6899999999999999999998877899999999999999999988775  4579999999987543


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      +...||+|++...-..  -...++....+.|++++++++....                            ..+.++++|
T Consensus        87 ~~~~~D~IviagmGg~--lI~~IL~~~~~~L~~~~~lIlq~~~----------------------------~~~~lr~~L  136 (244)
T 3gnl_A           87 KKDAIDTIVIAGMGGT--LIRTILEEGAAKLAGVTKLILQPNI----------------------------AAWQLREWS  136 (244)
T ss_dssp             GGGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESS----------------------------CHHHHHHHH
T ss_pred             ccccccEEEEeCCchH--HHHHHHHHHHHHhCCCCEEEEEcCC----------------------------ChHHHHHHH
Confidence            3346999986543321  1246788899999999999886532                            356789999


Q ss_pred             HHcCCceeEEE
Q 026688          209 RACGLVDFKCT  219 (235)
Q Consensus       209 ~~~Gf~~~~~~  219 (235)
                      .++||.++...
T Consensus       137 ~~~Gf~i~~E~  147 (244)
T 3gnl_A          137 EQNNWLITSEA  147 (244)
T ss_dssp             HHHTEEEEEEE
T ss_pred             HHCCCEEEEEE
Confidence            99999975554

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.72  E-value=7.8e-17  Score=128.78  Aligned_cols=122  Identities=19%  Similarity=0.205  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcC-------CC-CCCC
Q 026688           45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES-------NF-PKEN  115 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~-------~~-~~~~  115 (235)
                      ........++..+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|++++...+       .. ...+
T Consensus        89 ~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~  168 (336)
T 2b25_A           89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence            34455667777777777899999999999999999987 666799999999999999999887421       00 0247


Q ss_pred             eeEEecccccC--CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          116 FLLVRADISRL--PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       116 ~~~~~~d~~~~--~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +++..+|+.+.  +++.++||+|++.     .+++..+++++.++|+|||.+++..+.
T Consensus       169 v~~~~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          169 VDFIHKDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             EEEEESCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             eEEEECChHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            99999999875  4556689999974     345556899999999999999987764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.72  E-value=2.5e-17  Score=122.20  Aligned_cols=125  Identities=14%  Similarity=0.140  Sum_probs=95.1

Q ss_pred             CCHHHHHHHHhhcCCC-CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           45 GPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        45 ~~~~~~~~i~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      ......+.+.+.+... ++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++...+.. ..++++.++|+
T Consensus        36 ~~~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~  113 (201)
T 2ift_A           36 TGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCS-SEQAEVINQSS  113 (201)
T ss_dssp             --CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCC-TTTEEEECSCH
T ss_pred             CHHHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCC-ccceEEEECCH
Confidence            3445555666555432 478999999999999998777753 58999999999999999998876521 04799999998


Q ss_pred             ccCCC--CCCc-eeEEEecccccccCChHHHHHHH--HHhccCCcEEEEEEecc
Q 026688          124 SRLPF--ASSS-IDAVHAGAAIHCWSSPSTGVAEI--SRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       124 ~~~~~--~~~~-~D~i~~~~~l~~~~~~~~~l~~~--~~~L~pgG~li~~~~~~  172 (235)
                      .+...  +.++ ||+|++...++ ..+...+++.+  .++|+|||.+++.....
T Consensus       114 ~~~~~~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          114 LDFLKQPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             HHHTTSCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             HHHHHhhccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            76432  3568 99999987744 55566788888  66899999999887654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.72  E-value=3.1e-16  Score=126.79  Aligned_cols=118  Identities=19%  Similarity=0.233  Sum_probs=96.6

Q ss_pred             HHHHHHHhhcC--CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           48 KEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        48 ~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .+.+.+.+.+.  ..++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.+++++..++.    ++++.+.|+.+
T Consensus       218 ~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~~~----~v~~~~~D~~~  291 (381)
T 3dmg_A          218 LLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEANAL----KAQALHSDVDE  291 (381)
T ss_dssp             HHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHTTC----CCEEEECSTTT
T ss_pred             HHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC----CeEEEEcchhh
Confidence            34455544442  33578999999999999999999864  999999999999999999887642    48899999988


Q ss_pred             CCCCCCceeEEEecccccc-----cCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          126 LPFASSSIDAVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~-----~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .+.+.++||+|+++..+++     ..+...+++++.++|+|||.++++...
T Consensus       292 ~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          292 ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence            7655689999999988887     334468999999999999999998654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.71  E-value=1.3e-16  Score=126.38  Aligned_cols=118  Identities=16%  Similarity=0.168  Sum_probs=99.9

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..+++.++ ..+|+++|+|+.+++.|++++...+   ..++++...|+.
T Consensus        60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g---~~~v~~~~~d~~  136 (317)
T 1dl5_A           60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGY  136 (317)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGG
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCeEEEECChh
Confidence            346677888888877889999999999999999999876 3679999999999999999987765   346999999998


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +.+.+.++||+|++..+++|+.      +.+.++|+|||.+++.....
T Consensus       137 ~~~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          137 YGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             GCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCBG
T ss_pred             hccccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECCC
Confidence            7544457899999999999886      57889999999999976544

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.71  E-value=1.7e-16  Score=127.03  Aligned_cols=119  Identities=17%  Similarity=0.225  Sum_probs=98.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ....+.+.+.+...++.+|||+|||+|.++..+++.++..+|+++|+|+.+++.+++++...+.    ..++...|+.+.
T Consensus       182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~----~~~~~~~d~~~~  257 (343)
T 2pjd_A          182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV----EGEVFASNVFSE  257 (343)
T ss_dssp             CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC----CCEEEECSTTTT
T ss_pred             cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCEEEEcccccc
Confidence            3456677777765567899999999999999999998877999999999999999999877542    467788888764


Q ss_pred             CCCCCceeEEEecccccc-----cCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 PFASSSIDAVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~-----~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +  .++||+|+++..+++     ..+..++++++.++|+|||.+++....
T Consensus       258 ~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          258 V--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             C--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             c--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            3  578999999998875     234568999999999999999998764

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.71  E-value=3e-16  Score=118.81  Aligned_cols=114  Identities=17%  Similarity=0.148  Sum_probs=96.6

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.+++++...+     ++++...|+.+
T Consensus        55 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~-----~v~~~~~d~~~  127 (231)
T 1vbf_A           55 ALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN-----NIKLILGDGTL  127 (231)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS-----SEEEEESCGGG
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC-----CeEEEECCccc
Confidence            45667788888877778999999999999999999987  499999999999999999886532     78999999977


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .....++||+|++..+++|+.      .++.++|+|||.+++.....
T Consensus       128 ~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          128 GYEEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             CCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             ccccCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence            332457899999999999876      36899999999999987654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.71  E-value=7.6e-16  Score=117.87  Aligned_cols=117  Identities=13%  Similarity=0.121  Sum_probs=92.1

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF  128 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~  128 (235)
                      +.+..+....++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++++...+.  ..++++..+|+.+ ++.
T Consensus        53 ~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~l~~  130 (248)
T 3tfw_A           53 QFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV--DQRVTLREGPALQSLES  130 (248)
T ss_dssp             HHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHT
T ss_pred             HHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHh
Confidence            3333333444578999999999999999999866 67999999999999999999987664  3479999999876 232


Q ss_pred             C--CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          129 A--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       129 ~--~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .  .++||+|++...   ..+...+++++.++|+|||.|++.+...
T Consensus       131 ~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          131 LGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             CCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             cCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence            1  348999998653   3344678999999999999999876543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.71  E-value=3.3e-17  Score=119.04  Aligned_cols=124  Identities=15%  Similarity=0.163  Sum_probs=94.4

Q ss_pred             CHHHHHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .....+.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.+++++...+.  ..++++...|+.
T Consensus        15 ~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~   91 (177)
T 2esr_A           15 SDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTKA--ENRFTLLKMEAE   91 (177)
T ss_dssp             ---CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTTC--GGGEEEECSCHH
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECcHH
Confidence            3445566666665 4457899999999999999999873 46999999999999999999887653  247999999997


Q ss_pred             c-CCCCCCceeEEEecccccccCChHHHHHHHH--HhccCCcEEEEEEeccC
Q 026688          125 R-LPFASSSIDAVHAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       125 ~-~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~pgG~li~~~~~~~  173 (235)
                      + .+...+.||+|+++..++ .......++.+.  ++|+|||.+++......
T Consensus        92 ~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           92 RAIDCLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             HHHHHBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HhHHhhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            7 333346799999986653 233456677776  99999999999887653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.71  E-value=1.3e-16  Score=127.45  Aligned_cols=112  Identities=19%  Similarity=0.311  Sum_probs=93.5

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      +.+.+.+...++.+|||+|||+|.++..+++.+ ..+|+|+|+++ +++.|++++...+.  ..++++..+|+.+.+++.
T Consensus        54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNKL--EDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTSCCSC
T ss_pred             HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcCC--CCcEEEEEeeHHHhcCCC
Confidence            455555555668899999999999999999885 35899999997 99999999887654  358999999999888777


Q ss_pred             CceeEEEecc---cccccCChHHHHHHHHHhccCCcEEE
Q 026688          131 SSIDAVHAGA---AIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       131 ~~~D~i~~~~---~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      ++||+|++..   .+.+..+...++.++.++|+|||.++
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            8999999876   45555556789999999999999998

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.71  E-value=3.3e-16  Score=121.99  Aligned_cols=126  Identities=15%  Similarity=0.129  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeC-CHHHHHHHHHHhh-----hcCCC--CCCC
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQ-----QESNF--PKEN  115 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~-s~~~~~~a~~~~~-----~~~~~--~~~~  115 (235)
                      +....+.+.+.......++.+|||+|||+|.++..+++.+ ..+|+++|+ ++.+++.+++++.     ..+..  ...+
T Consensus        62 ~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~  140 (281)
T 3bzb_A           62 SGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRAS  140 (281)
T ss_dssp             CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CC
T ss_pred             cHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCC
Confidence            3344566666666544557899999999999999998875 348999999 8999999999883     32210  0026


Q ss_pred             eeEEecccccC--CC----CCCceeEEEecccccccCChHHHHHHHHHhcc---C--CcEEEEEEe
Q 026688          116 FLLVRADISRL--PF----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLR---P--GGVFVGTTY  170 (235)
Q Consensus       116 ~~~~~~d~~~~--~~----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~---p--gG~li~~~~  170 (235)
                      +++...|..+.  .+    +.++||+|++..+++|.++...+++.+.++|+   |  ||.+++...
T Consensus       141 v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~  206 (281)
T 3bzb_A          141 PKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFT  206 (281)
T ss_dssp             CEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred             eEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence            77775554331  11    35789999999999998888999999999999   9  998877543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.71  E-value=4.8e-17  Score=130.32  Aligned_cols=125  Identities=11%  Similarity=0.047  Sum_probs=99.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhh-------hcCCCCCCCeeEE
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------QESNFPKENFLLV  119 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~-------~~~~~~~~~~~~~  119 (235)
                      ...+..+++.+...++.+|||+|||+|..+..++...+..+++|+|+++.+++.|++...       ..+.. ..+++++
T Consensus       159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~-~~rVefi  237 (438)
T 3uwp_A          159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-HAEYTLE  237 (438)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-CCEEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-CCCeEEE
Confidence            455677788888888999999999999999999877554469999999999999987542       22221 2479999


Q ss_pred             ecccccCCCCC--CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          120 RADISRLPFAS--SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       120 ~~d~~~~~~~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ++|+.+.++..  ..+|+|+++..++ .++....|.++.++|||||.|++.+....
T Consensus       238 ~GD~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          238 RGDFLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             ECCTTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             ECcccCCccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence            99999877543  4799999987664 46677889999999999999999876554

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.70  E-value=1.9e-16  Score=119.23  Aligned_cols=122  Identities=10%  Similarity=0.134  Sum_probs=94.9

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-  125 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-  125 (235)
                      ...+.+...+...++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.|++++...+.  ..++++.++|+.+ 
T Consensus        45 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~  122 (221)
T 3u81_A           45 AKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL--QDKVTILNGASQDL  122 (221)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC--CCceEEEECCHHHH
Confidence            334444444444457899999999999999999864 367999999999999999999887664  3469999999855 


Q ss_pred             CCC-C----CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          126 LPF-A----SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       126 ~~~-~----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ++. .    .++||+|++....++..+...++..+ ++|+|||.+++.+...
T Consensus       123 l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          123 IPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             GGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             HHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence            232 1    16899999988777776666777777 9999999999866543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.70  E-value=1.1e-16  Score=128.39  Aligned_cols=108  Identities=14%  Similarity=0.239  Sum_probs=90.7

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.|++++...+.  ..+++++.+|+.+.+++.++||+|++
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s~-~l~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~fD~Iis  139 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSS-ISDYAVKIVKANKL--DHVVTIIKGKVEEVELPVEKVDIIIS  139 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTTC--TTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcHH-HHHHHHHHHHHcCC--CCcEEEEECcHHHccCCCCceEEEEE
Confidence            3457899999999999999999984 46999999995 99999999887764  44699999999998887889999998


Q ss_pred             ccc---ccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          139 GAA---IHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       139 ~~~---l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ..+   +.+..+...+++.+.++|+|||.++....
T Consensus       140 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  174 (349)
T 3q7e_A          140 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA  174 (349)
T ss_dssp             CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             ccccccccCchhHHHHHHHHHHhCCCCCEEccccc
Confidence            665   34446778899999999999999985433

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.70  E-value=1.2e-16  Score=121.19  Aligned_cols=112  Identities=18%  Similarity=0.175  Sum_probs=86.4

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc---CCCCCCCeeEEeccccc-CC--CCCCce
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---SNFPKENFLLVRADISR-LP--FASSSI  133 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~~~~~~~~~~~~d~~~-~~--~~~~~~  133 (235)
                      .++.+|||||||+|.++..+++..+...++|+|+|+.+++.|++++...   ......++.++++|+.+ ++  ++.++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            3467899999999999999999988889999999999999999876531   00114579999999986 55  667899


Q ss_pred             eEEEecccccccCC--------hHHHHHHHHHhccCCcEEEEEEec
Q 026688          134 DAVHAGAAIHCWSS--------PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       134 D~i~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      |.|++.....+...        ...+++++.++|+|||.|++.+..
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            99987544332211        136899999999999999987654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.70  E-value=1.3e-16  Score=118.47  Aligned_cols=124  Identities=12%  Similarity=0.125  Sum_probs=97.0

Q ss_pred             CCCHHHHHHHHhhcCCC-CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           44 PGPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      |......+.+.+.+... ++.+|||+|||+|.++..+++++. .+|+++|+|+.+++.|++++...+   ..++++.+.|
T Consensus        36 p~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~D  111 (202)
T 2fpo_A           36 PTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSN  111 (202)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSC
T ss_pred             CCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECC
Confidence            44566666776666532 578999999999999998877763 489999999999999999988765   2479999999


Q ss_pred             ccc-CCCCCCceeEEEecccccccCChHHHHHHHHH--hccCCcEEEEEEecc
Q 026688          123 ISR-LPFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYIV  172 (235)
Q Consensus       123 ~~~-~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~li~~~~~~  172 (235)
                      +.+ .+...++||+|++...++ ......+++.+.+  +|+|||.+++.....
T Consensus       112 ~~~~~~~~~~~fD~V~~~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          112 AMSFLAQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             HHHHHSSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             HHHHHhhcCCCCCEEEECCCCC-CCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            876 454557899999987744 5566778888866  599999999887654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.70  E-value=1.8e-16  Score=116.07  Aligned_cols=126  Identities=19%  Similarity=0.182  Sum_probs=99.8

Q ss_pred             CCCHHHHHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           44 PGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      |......+.+.+.+.. .++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.|++++...+.  ..++++..+|
T Consensus        26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d  102 (187)
T 2fhp_A           26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKE--PEKFEVRKMD  102 (187)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESC
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCC--CcceEEEECc
Confidence            5567777888877743 457899999999999999888854 46999999999999999999877653  2479999999


Q ss_pred             cccCC----CCCCceeEEEecccccccCChHHHHHHH--HHhccCCcEEEEEEeccC
Q 026688          123 ISRLP----FASSSIDAVHAGAAIHCWSSPSTGVAEI--SRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       123 ~~~~~----~~~~~~D~i~~~~~l~~~~~~~~~l~~~--~~~L~pgG~li~~~~~~~  173 (235)
                      +.+..    .+.++||+|+++..++ ..+....++.+  .++|+|||.+++......
T Consensus       103 ~~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          103 ANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HHHHHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            87632    2257899999987744 44566777777  889999999999877653

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.69  E-value=5.2e-17  Score=117.18  Aligned_cols=122  Identities=16%  Similarity=0.191  Sum_probs=96.4

Q ss_pred             CCCHHHHHHHHhhcCCC--CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           44 PGPEKEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      +......+.+.+.+...  ++.+|||+|||+|.++..+++.++  .++++|+|+.+++.+++++...+   . ++++.+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~   95 (171)
T 1ws6_A           22 PSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTG---L-GARVVAL   95 (171)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHT---C-CCEEECS
T ss_pred             CCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcC---C-ceEEEec
Confidence            44566666666665431  578999999999999999999887  59999999999999999987764   2 7899999


Q ss_pred             ccccC-C-CC--CCceeEEEecccccccCChHHHHHHHH--HhccCCcEEEEEEeccC
Q 026688          122 DISRL-P-FA--SSSIDAVHAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       122 d~~~~-~-~~--~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~pgG~li~~~~~~~  173 (235)
                      |+.+. + .+  .++||+|++...++  .+....++.+.  ++|+|||.+++......
T Consensus        96 d~~~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A           96 PVEVFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             cHHHHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            98763 2 11  24799999987765  45556777777  99999999999887654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.69  E-value=2.4e-16  Score=127.59  Aligned_cols=118  Identities=16%  Similarity=0.222  Sum_probs=96.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+.......++.+|||+|||+|.++..+++.+. .+|+|+|+| .+++.|++++..++.  ..+++++++|+.+.++
T Consensus        51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~  126 (376)
T 3r0q_C           51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKANNL--DHIVEVIEGSVEDISL  126 (376)
T ss_dssp             HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHTTC--TTTEEEEESCGGGCCC
T ss_pred             HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHcCC--CCeEEEEECchhhcCc
Confidence            344555555666789999999999999999999853 499999999 999999999887765  4569999999998876


Q ss_pred             CCCceeEEEeccccccc---CChHHHHHHHHHhccCCcEEEEEEec
Q 026688          129 ASSSIDAVHAGAAIHCW---SSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      + ++||+|++..+.+++   .....+++.+.++|+|||.+++....
T Consensus       127 ~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          127 P-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             S-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             C-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            6 889999996655544   44678999999999999999875543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.69  E-value=8.5e-16  Score=123.58  Aligned_cols=127  Identities=20%  Similarity=0.055  Sum_probs=104.3

Q ss_pred             CCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688           42 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  120 (235)
Q Consensus        42 ~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (235)
                      ..+....+...+.......++.+|||+|||+|.++..++... +...++|+|+++.+++.|++++...+.  . ++++.+
T Consensus       184 ~a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~--~-~i~~~~  260 (354)
T 3tma_A          184 RGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL--S-WIRFLR  260 (354)
T ss_dssp             SCSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC--T-TCEEEE
T ss_pred             CCCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC--C-ceEEEe
Confidence            345566777888888887778999999999999999999976 667999999999999999999988764  2 799999


Q ss_pred             cccccCCCCCCceeEEEecccccccCC--------hHHHHHHHHHhccCCcEEEEEEec
Q 026688          121 ADISRLPFASSSIDAVHAGAAIHCWSS--------PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       121 ~d~~~~~~~~~~~D~i~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .|+.+++.+.+.||+|+++-.+.....        ...+++.+.++|+|||.+++.++.
T Consensus       261 ~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          261 ADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             CCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             CChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            999998766677999999755432211        157899999999999999997654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.69  E-value=1.5e-16  Score=120.62  Aligned_cols=120  Identities=13%  Similarity=0.144  Sum_probs=95.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ....+.+...+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.|++++...+.  ..++++..+|+.+.
T Consensus        57 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~  134 (232)
T 3ntv_A           57 RLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF--ENQVRIIEGNALEQ  134 (232)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC--TTTEEEEESCGGGC
T ss_pred             HHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECCHHHH
Confidence            3444555555554557899999999999999999977778999999999999999999987654  34899999999764


Q ss_pred             -C-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 -P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 -~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                       + ...++||+|++...   ..+...+++.+.++|+|||.+++....
T Consensus       135 ~~~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~  178 (232)
T 3ntv_A          135 FENVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVL  178 (232)
T ss_dssp             HHHHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred             HHhhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence             3 22578999997643   344568899999999999999885543

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.69  E-value=5.1e-16  Score=122.77  Aligned_cols=123  Identities=20%  Similarity=0.180  Sum_probs=95.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ......+...+...++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...+   ..++.+.+.|+..
T Consensus       104 d~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g---~~~v~~~~~D~~~  180 (315)
T 1ixk_A          104 EASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLH  180 (315)
T ss_dssp             CHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGG
T ss_pred             CHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC---CCeEEEEECChhh
Confidence            33444555666777789999999999999999998753 4699999999999999999988765   3479999999988


Q ss_pred             CCCCCCceeEEEecc------cccccCCh----------------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          126 LPFASSSIDAVHAGA------AIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~------~l~~~~~~----------------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .+...+.||+|++..      ++.+.++.                ..+++++.++|+|||.+++++.+.
T Consensus       181 ~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          181 IGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             GGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            654456899999842      23322221                478999999999999999988764

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.68  E-value=2e-16  Score=121.52  Aligned_cols=147  Identities=13%  Similarity=0.043  Sum_probs=98.1

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC---CCCC---Ccee
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFAS---SSID  134 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~---~~~D  134 (235)
                      ++.+|||+|||+|.++..++++.+..+|+++|+|+.+++.|++++...+.  ..++++.++|+.+.   +++.   ++||
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL--SDLIKVVKVPQKTLLMDALKEESEIIYD  142 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC--CccEEEEEcchhhhhhhhhhcccCCccc
Confidence            46799999999999999998875556999999999999999999887654  34699999997652   3432   5899


Q ss_pred             EEEecccccccC---------------ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCC----c
Q 026688          135 AVHAGAAIHCWS---------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG----S  195 (235)
Q Consensus       135 ~i~~~~~l~~~~---------------~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  195 (235)
                      +|+++..+++..               ....++.++.++|+|||.+.+....          .............    .
T Consensus       143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~----------~~~~~~~l~~~g~~~~~~  212 (254)
T 2h00_A          143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRI----------IHDSLQLKKRLRWYSCML  212 (254)
T ss_dssp             EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHH----------HHHHHHHGGGBSCEEEEE
T ss_pred             EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHH----------HHHHHhcccceEEEEECC
Confidence            999986554432               0124567889999999987654321          1111111111110    0


Q ss_pred             eeecCHHHHHHHHHHcCCceeEEE
Q 026688          196 YTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       196 ~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      ......+++.++++++||..+.+.
T Consensus       213 ~~~~~~~~~~~~l~~~Gf~~v~~~  236 (254)
T 2h00_A          213 GKKCSLAPLKEELRIQGVPKVTYT  236 (254)
T ss_dssp             SSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred             CChhHHHHHHHHHHHcCCCceEEE
Confidence            112233789999999999877654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.68  E-value=7.4e-16  Score=117.02  Aligned_cols=116  Identities=15%  Similarity=0.151  Sum_probs=96.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .......+.+.+...++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.+++++...+   ..++.+..+|.. 
T Consensus        76 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~-  150 (235)
T 1jg1_A           76 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDGS-  150 (235)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGG-
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEECCcc-
Confidence            456677788888777789999999999999999999875 699999999999999999987765   346899999973 


Q ss_pred             CCCCC-CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          126 LPFAS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       126 ~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .+++. ..||+|++..+++++.      +++.+.|+|||.+++.....
T Consensus       151 ~~~~~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          151 KGFPPKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             GCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             cCCCCCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEecC
Confidence            23333 4599999999988775      36899999999999988754

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.68  E-value=5.1e-16  Score=120.97  Aligned_cols=121  Identities=16%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      +..+.+.+.+++.+...++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...+.  ..++++.++|+
T Consensus       106 ~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l--~~~v~~~~~D~  182 (284)
T 1nv8_A          106 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEF  182 (284)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESST
T ss_pred             hhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECcc
Confidence            444567777777665334679999999999999999998 778999999999999999999987654  33699999999


Q ss_pred             ccCCCCCCce---eEEEeccccc-----------ccC--------ChHHHHHHHH-HhccCCcEEEEEE
Q 026688          124 SRLPFASSSI---DAVHAGAAIH-----------CWS--------SPSTGVAEIS-RVLRPGGVFVGTT  169 (235)
Q Consensus       124 ~~~~~~~~~~---D~i~~~~~l~-----------~~~--------~~~~~l~~~~-~~L~pgG~li~~~  169 (235)
                      .+. ++ ++|   |+|+++-...           |.+        +...+++++. +.|+|||.+++..
T Consensus       183 ~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          183 LEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             TGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             hhh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence            773 22 578   9999972111           221        1237899999 9999999999854

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.68  E-value=3.8e-16  Score=117.37  Aligned_cols=118  Identities=12%  Similarity=0.075  Sum_probs=92.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCC-CCeeEEecccccC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPK-ENFLLVRADISRL  126 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~d~~~~  126 (235)
                      .+..+.......+..+|||+|||+|..+..+++.. +.++|+++|+++.+++.|++++...+.  . .++++.++|+.+.
T Consensus        44 ~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~~i~~~~gda~~~  121 (221)
T 3dr5_A           44 LLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY--SPSRVRFLLSRPLDV  121 (221)
T ss_dssp             HHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC--CGGGEEEECSCHHHH
T ss_pred             HHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CcCcEEEEEcCHHHH
Confidence            34444444444344599999999999999999875 367999999999999999999987764  3 4799999998764


Q ss_pred             -C-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 -P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 -~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                       + ++.++||+|++....   .+...+++++.++|+|||.+++....
T Consensus       122 l~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          122 MSRLANDSYQLVFGQVSP---MDLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             GGGSCTTCEEEEEECCCT---TTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             HHHhcCCCcCeEEEcCcH---HHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence             2 335789999986533   34457899999999999999985543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.68  E-value=4.1e-15  Score=120.26  Aligned_cols=142  Identities=15%  Similarity=0.102  Sum_probs=110.8

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      +....+...+.... ..++.+|||+|||+|.++..++..++..+|+|+|+|+.+++.|++++...+.  ..++++.++|+
T Consensus       201 ~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl--~~~i~~~~~D~  277 (373)
T 3tm4_A          201 HLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV--LDKIKFIQGDA  277 (373)
T ss_dssp             CCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC--GGGCEEEECCG
T ss_pred             CccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC--CCceEEEECCh
Confidence            44667777777777 6678999999999999999999988766899999999999999999987754  35799999999


Q ss_pred             ccCCCCCCceeEEEecccccccC----Ch----HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCc
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWS----SP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS  195 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~----~~----~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (235)
                      .+++.+.++||+|+++..+....    ..    ..+++.+.++|  +|.+++...                         
T Consensus       278 ~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------------------  330 (373)
T 3tm4_A          278 TQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------------------  330 (373)
T ss_dssp             GGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------------------
T ss_pred             hhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------------------
Confidence            99887778999999975543221    11    46788888888  555555443                         


Q ss_pred             eeecCHHHHHHHHHHcCCceeEEE
Q 026688          196 YTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       196 ~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                          +.+.+++.+.+.||+..+..
T Consensus       331 ----~~~~~~~~~~~~G~~~~~~~  350 (373)
T 3tm4_A          331 ----EKKAIEEAIAENGFEIIHHR  350 (373)
T ss_dssp             ----CHHHHHHHHHHTTEEEEEEE
T ss_pred             ----CHHHHHHHHHHcCCEEEEEE
Confidence                34667788899999876654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.67  E-value=2.3e-15  Score=113.36  Aligned_cols=120  Identities=13%  Similarity=0.100  Sum_probs=92.7

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ...+.+..++...++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...+.  ..++++..+|+.+.
T Consensus        45 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~  122 (223)
T 3duw_A           45 TQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL--NDRVEVRTGLALDS  122 (223)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHH
Confidence            3333444443444578999999999999999999866 67999999999999999999987664  34699999999653


Q ss_pred             -C-CC---CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          127 -P-FA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       127 -~-~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                       + ++   .++||+|++.....   ....+++++.++|+|||.+++.....
T Consensus       123 ~~~~~~~~~~~fD~v~~d~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          123 LQQIENEKYEPFDFIFIDADKQ---NNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             HHHHHHTTCCCCSEEEECSCGG---GHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             HHHHHhcCCCCcCEEEEcCCcH---HHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence             1 11   15799999875532   34578999999999999988876543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.67  E-value=1e-17  Score=127.80  Aligned_cols=154  Identities=16%  Similarity=0.114  Sum_probs=111.5

Q ss_pred             HHHHHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ....+.+...+. ..++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.+++++...+.  ..++++.++|+.+
T Consensus        63 ~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~  138 (241)
T 3gdh_A           63 EKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGI--ADKIEFICGDFLL  138 (241)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHH
T ss_pred             HHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCC--CcCeEEEECChHH
Confidence            333444444432 2257899999999999999999986  4999999999999999999887653  2479999999988


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  205 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (235)
                      .+ +.++||+|+++..+++..+....+.++.++|+|||.+++.........              .........+.+++.
T Consensus       139 ~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~~~--------------~~~~lp~~~~~~~~~  203 (241)
T 3gdh_A          139 LA-SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITNN--------------IVYFLPRNADIDQVA  203 (241)
T ss_dssp             HG-GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHHHHHHCSC--------------EEEEEETTBCHHHHH
T ss_pred             hc-ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHHHHhhCCc--------------eEEECCCCCCHHHHH
Confidence            66 467999999999999888777678889999999998664322110000              000012234667788


Q ss_pred             HHHHHcCCceeEEE
Q 026688          206 DLCRACGLVDFKCT  219 (235)
Q Consensus       206 ~~l~~~Gf~~~~~~  219 (235)
                      .++...|...+...
T Consensus       204 ~~l~~~g~~~i~~~  217 (241)
T 3gdh_A          204 SLAGPGGQVEIEQN  217 (241)
T ss_dssp             HTTCTTCCEEEEEE
T ss_pred             HHhccCCCEEEEeh
Confidence            88887776555443

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.67  E-value=3.7e-15  Score=113.93  Aligned_cols=116  Identities=12%  Similarity=0.076  Sum_probs=96.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ......+...+...++.+|||+|||+|.++..+++.  ..+++++|+++.+++.++++....+.  ..++++...|+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~  152 (248)
T 2yvl_A           77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNL--GKNVKFFNVDFKDA  152 (248)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTC--CTTEEEECSCTTTS
T ss_pred             chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCC--CCcEEEEEcChhhc
Confidence            445556777777777899999999999999999988  45999999999999999999877653  35789999999874


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ..+.+.||+|++     +.+++..+++++.++|+|||.+++..+.
T Consensus       153 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          153 EVPEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             CCCTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             ccCCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            424578999997     4567778999999999999999998864

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.67  E-value=2.2e-17  Score=124.91  Aligned_cols=158  Identities=13%  Similarity=0.079  Sum_probs=94.1

Q ss_pred             HHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           50 FELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        50 ~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ++.+++.+.. ..+.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.++++..........++.+...  ..  +
T Consensus        25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~--~~--~   99 (232)
T 3opn_A           25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVL--AD--F   99 (232)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCG--GG--C
T ss_pred             HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCH--hH--c
Confidence            3444444443 3467999999999999999999853 499999999999999876432110000011222111  11  1


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      +...+|.+.+..++.++   ..+++++.++|+|||.+++.....     .......+...-.......+..+.+++.+++
T Consensus       100 ~~~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~~p~-----~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l  171 (232)
T 3opn_A          100 EQGRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALIKPQ-----FEAGREQVGKNGIIRDPKVHQMTIEKVLKTA  171 (232)
T ss_dssp             CSCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEECHH-----HHSCHHHHC-CCCCCCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEECcc-----cccCHHHhCcCCeecCcchhHHHHHHHHHHH
Confidence            11224555555554443   678999999999999999864110     0000000000000001122345789999999


Q ss_pred             HHcCCceeEEEe
Q 026688          209 RACGLVDFKCTR  220 (235)
Q Consensus       209 ~~~Gf~~~~~~~  220 (235)
                      +++||++.....
T Consensus       172 ~~aGf~v~~~~~  183 (232)
T 3opn_A          172 TQLGFSVKGLTF  183 (232)
T ss_dssp             HHHTEEEEEEEE
T ss_pred             HHCCCEEEEEEE
Confidence            999999887764

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.67  E-value=1.4e-15  Score=110.15  Aligned_cols=100  Identities=20%  Similarity=0.231  Sum_probs=84.4

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------CC
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA  129 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~  129 (235)
                      ..++.+|||+|||+|.++..+++. ++..+++++|+++ +++             ..++++...|+.+.+        ++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------------IVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------------cCcEEEEEcccccchhhhhhhccCC
Confidence            456789999999999999999988 5667999999999 642             236889999998765        56


Q ss_pred             CCceeEEEecccccccCCh-----------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          130 SSSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .++||+|++...+++..+.           ..+++++.++|+|||.+++..+..
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            6899999999888877765           688999999999999999987754

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.67  E-value=3.1e-16  Score=121.02  Aligned_cols=107  Identities=11%  Similarity=0.124  Sum_probs=83.9

Q ss_pred             CCCeEEEecCCCch----HHHHHHHcCC----CceEEEEeCCHHHHHHHHHHhhhc----CC------------C---CC
Q 026688           61 LGGNIIDASCGSGL----FSRIFAKSGL----FSLVVALDYSENMLKQCYEFVQQE----SN------------F---PK  113 (235)
Q Consensus        61 ~~~~vLdiG~G~G~----~~~~l~~~~~----~~~v~~~D~s~~~~~~a~~~~~~~----~~------------~---~~  113 (235)
                      ++.+|||+|||+|.    +++.+++..+    ..+|+|+|+|+.+++.|++..-..    +.            .   ..
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999998    5555666522    358999999999999999864100    00            0   00


Q ss_pred             ---------CCeeEEecccccCCCC-CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEE
Q 026688          114 ---------ENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       114 ---------~~~~~~~~d~~~~~~~-~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~  167 (235)
                               .++.|.+.|+.+.+++ .+.||+|+|..+++|++++  .++++++.+.|+|||+|++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                     2689999999886554 4789999999999999766  6899999999999999987

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.66  E-value=6.8e-16  Score=122.79  Aligned_cols=112  Identities=19%  Similarity=0.280  Sum_probs=90.6

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      .+.+.....++.+|||+|||+|.++..+++.+ ..+|+|+|++ .+++.|++++..++.  ..+++++.+|+.+.+++.+
T Consensus        29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~~~  104 (328)
T 1g6q_1           29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELNGF--SDKITLLRGKLEDVHLPFP  104 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHTTC--TTTEEEEESCTTTSCCSSS
T ss_pred             HHHhhHhhcCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHcCC--CCCEEEEECchhhccCCCC
Confidence            34333333457899999999999999999875 3589999999 599999999887664  4579999999998877778


Q ss_pred             ceeEEEeccc---ccccCChHHHHHHHHHhccCCcEEEE
Q 026688          132 SIDAVHAGAA---IHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       132 ~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      +||+|++...   +.+......++..+.++|+|||.++.
T Consensus       105 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            9999998754   44445667899999999999999984

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.66  E-value=7.1e-16  Score=123.67  Aligned_cols=118  Identities=14%  Similarity=0.213  Sum_probs=96.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.+ ..+|+++|+|+ +++.|++++...+.  ..+++++.+|+.+.++
T Consensus        38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~l--~~~v~~~~~d~~~~~~  113 (348)
T 2y1w_A           38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNNL--TDRIVVIPGKVEEVSL  113 (348)
T ss_dssp             HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTTC--TTTEEEEESCTTTCCC
T ss_pred             HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHcCC--CCcEEEEEcchhhCCC
Confidence            34556666665668899999999999999998874 45999999996 88999998877654  3579999999998765


Q ss_pred             CCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEec
Q 026688          129 ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      + ++||+|++..+++|+...  ...+.++.++|+|||.+++...+
T Consensus       114 ~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (348)
T 2y1w_A          114 P-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGD  157 (348)
T ss_dssp             S-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEE
T ss_pred             C-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence            5 689999999888887544  47788999999999999865443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.66  E-value=4.6e-16  Score=117.97  Aligned_cols=121  Identities=17%  Similarity=0.149  Sum_probs=97.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .......+...+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.|++++...+.  ..++.+..+|+.+
T Consensus        39 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~  116 (233)
T 2gpy_A           39 DLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL--ESRIELLFGDALQ  116 (233)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCGGG
T ss_pred             CHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECCHHH
Confidence            34445555555555567899999999999999999987777999999999999999999887653  3479999999977


Q ss_pred             C-CCC--CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          126 L-PFA--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       126 ~-~~~--~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      . +..  .+.||+|++.....   +...+++.+.++|+|||.+++.+..
T Consensus       117 ~~~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          117 LGEKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             SHHHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             HHHhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            4 322  47899999876643   5678999999999999999987543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.66  E-value=3e-16  Score=120.28  Aligned_cols=122  Identities=16%  Similarity=0.092  Sum_probs=90.9

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc--CCCceEEEEeCCHHHHHHHHHHhhhc---CCCCCCC-------
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQE---SNFPKEN-------  115 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~---~~~~~~~-------  115 (235)
                      +..+.+++.+...++.+|||+|||+|.++..+++.  .+..+|+|+|+|+.+++.|++++...   +.  ..+       
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~--~~~~~~~~~~  115 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL--TARELERREQ  115 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc--cccchhhhhh
Confidence            34455555554445789999999999999999887  55568999999999999999877543   11  001       


Q ss_pred             ------------------ee-------------EEecccccCCC-----CCCceeEEEecccccccCC---------hHH
Q 026688          116 ------------------FL-------------LVRADISRLPF-----ASSSIDAVHAGAAIHCWSS---------PST  150 (235)
Q Consensus       116 ------------------~~-------------~~~~d~~~~~~-----~~~~~D~i~~~~~l~~~~~---------~~~  150 (235)
                                        ++             +.+.|+.+...     ...+||+|+++..+.+..+         ...
T Consensus       116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~  195 (250)
T 1o9g_A          116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG  195 (250)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred             hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence                              55             89999876321     3358999999876655443         248


Q ss_pred             HHHHHHHhccCCcEEEEEEec
Q 026688          151 GVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       151 ~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +++++.++|+|||+++++...
T Consensus       196 ~l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          196 LLRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             HHHHHHHHSCTTCEEEEEESS
T ss_pred             HHHHHHHhcCCCcEEEEeCcc
Confidence            899999999999999985443

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.66  E-value=2.7e-16  Score=119.87  Aligned_cols=121  Identities=9%  Similarity=0.062  Sum_probs=94.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ....+.+..++...++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.|++++...+.  ..++++..+|+.+
T Consensus        46 ~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~  123 (242)
T 3r3h_A           46 PEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ--EHKIKLRLGPALD  123 (242)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC--TTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHH
Confidence            33444444444444578999999999999999999764 67999999999999999999987764  4589999999976


Q ss_pred             C-CCC-----CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          126 L-PFA-----SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       126 ~-~~~-----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      . +..     .++||+|++...   ..+...+++++.++|+|||.|++.+...
T Consensus       124 ~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~  173 (242)
T 3r3h_A          124 TLHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW  173 (242)
T ss_dssp             HHHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred             HHHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence            4 211     478999998654   2344578999999999999999976654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.66  E-value=2.2e-15  Score=116.66  Aligned_cols=99  Identities=26%  Similarity=0.360  Sum_probs=85.3

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .++.+|||+|||+|.++..+++..+..+++++|+|+.+++.++++.        .++.+...|+.+++++.++||+|++.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~  155 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--------PQVTFCVASSHRLPFSDTSMDAIIRI  155 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTSCSBCTTCEEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcchhhCCCCCCceeEEEEe
Confidence            3578999999999999999999865669999999999999998863        36789999998888777899999986


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      .+.       ..++++.++|+|||.+++.++...
T Consensus       156 ~~~-------~~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          156 YAP-------CKAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             SCC-------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCh-------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence            553       348999999999999999988754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.66  E-value=8.3e-16  Score=119.01  Aligned_cols=154  Identities=13%  Similarity=0.056  Sum_probs=99.4

Q ss_pred             HHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCee-EEecccccCC
Q 026688           50 FELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP  127 (235)
Q Consensus        50 ~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~d~~~~~  127 (235)
                      +..+++.+.. .++.+|||+|||+|.++..+++.+ ..+|+|+|+++.|++.+.+.        ..++. +...++..++
T Consensus        73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~--------~~rv~~~~~~ni~~l~  143 (291)
T 3hp7_A           73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQ--------DDRVRSMEQYNFRYAE  143 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHT--------CTTEEEECSCCGGGCC
T ss_pred             HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh--------CcccceecccCceecc
Confidence            3344444443 356799999999999999998885 35899999999999885442        22332 2223443322


Q ss_pred             ---CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHH
Q 026688          128 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI  204 (235)
Q Consensus       128 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (235)
                         ++..+||+|++..+++++   ..++.++.++|+|||.+++.......  ........  .. .-.....+....+++
T Consensus       144 ~~~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lvkPqfe--~~~~~~~~--~G-~vrd~~~~~~~~~~v  215 (291)
T 3hp7_A          144 PVDFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVALVKPQFE--AGREQIGK--NG-IVRESSIHEKVLETV  215 (291)
T ss_dssp             GGGCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEECGGGT--SCGGGCC---CC-CCCCHHHHHHHHHHH
T ss_pred             hhhCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEECcccc--cChhhcCC--CC-ccCCHHHHHHHHHHH
Confidence               334469999998887754   67899999999999999987422110  00000000  00 000011233567889


Q ss_pred             HHHHHHcCCceeEEEe
Q 026688          205 EDLCRACGLVDFKCTR  220 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~~  220 (235)
                      ..+++++||.+.....
T Consensus       216 ~~~~~~~Gf~v~~~~~  231 (291)
T 3hp7_A          216 TAFAVDYGFSVKGLDF  231 (291)
T ss_dssp             HHHHHHTTEEEEEEEE
T ss_pred             HHHHHHCCCEEEEEEE
Confidence            9999999999877764

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.66  E-value=2.9e-15  Score=112.59  Aligned_cols=160  Identities=10%  Similarity=0.034  Sum_probs=115.7

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .+.+...+++.+..  +.+|||+|||+|-++..+....+.+.|+++|+++.+++.+++++...+    .+..+...|+..
T Consensus       119 lD~fY~~i~~~i~~--p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g----~~~~~~v~D~~~  192 (281)
T 3lcv_B          119 LDEFYRELFRHLPR--PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN----VPHRTNVADLLE  192 (281)
T ss_dssp             HHHHHHHHGGGSCC--CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT----CCEEEEECCTTT
T ss_pred             HHHHHHHHHhccCC--CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeeecc
Confidence            44555566666644  789999999999999999998888999999999999999999998764    357889999977


Q ss_pred             CCCCCCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHH
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  203 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (235)
                      .+ +.+.||++++.-+++|+++..  ..+ ++.+.|+|+|.++- .+... .....+...              ..-...
T Consensus       193 ~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVS-fp~ks-l~Grs~gm~--------------~~Y~~~  254 (281)
T 3lcv_B          193 DR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVT-FPTKS-LGQRSKGMF--------------QNYSQS  254 (281)
T ss_dssp             SC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEE-EECC--------CHH--------------HHHHHH
T ss_pred             cC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEe-ccchh-hcCCCcchh--------------hHHHHH
Confidence            55 457899999999999997653  444 89999999876654 33321 001111111              123467


Q ss_pred             HHHHHHHcCCceeEEEeeCcEEEEEEe
Q 026688          204 IEDLCRACGLVDFKCTRNRGFVMFTAT  230 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~  230 (235)
                      |++.+.+.|.. ++....+.=.+|+.+
T Consensus       255 ~e~~~~~~g~~-~~~~~~~nEl~y~i~  280 (281)
T 3lcv_B          255 FESQARERSCR-IQRLEIGNELIYVIQ  280 (281)
T ss_dssp             HHHHHHHHTCC-EEEEEETTEEEEEEC
T ss_pred             HHHHHHhcCCc-eeeeeecCeeEEEec
Confidence            88889999995 455555554455444

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.65  E-value=1.1e-15  Score=124.60  Aligned_cols=124  Identities=9%  Similarity=-0.042  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHH-------HHHhhhcCCCCCCCeeEE
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YEFVQQESNFPKENFLLV  119 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a-------~~~~~~~~~~~~~~~~~~  119 (235)
                      ......+++.+...++.+|||+|||+|.++..+++..+..+|+|+|+++.+++.|       ++++...+.. ..++++.
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-~~nV~~i  306 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEFS  306 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-CCceEEE
Confidence            4566777777777778999999999999999999875555899999999999988       7777665421 1478888


Q ss_pred             ecccccC--CC--CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          120 RADISRL--PF--ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       120 ~~d~~~~--~~--~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .+|....  ++  ..+.||+|+++.++. .++....++++.+.|+|||.+++.+...
T Consensus       307 ~gD~~~~~~~~~~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LKpGG~lVi~d~f~  362 (433)
T 1u2z_A          307 LKKSFVDNNRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCKIISLKSLR  362 (433)
T ss_dssp             ESSCSTTCHHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             EcCccccccccccccCCCCEEEEeCccc-cccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence            8754421  11  236899999876663 4566788999999999999999975443

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.65  E-value=1e-15  Score=116.99  Aligned_cols=102  Identities=20%  Similarity=0.277  Sum_probs=85.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--------CCCCCCCeeEEeccccc-CC--CC
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SNFPKENFLLVRADISR-LP--FA  129 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~~~~~~~~~~d~~~-~~--~~  129 (235)
                      ++.+|||+|||+|.++..+++.++...|+|+|+|+.+++.+++++...        +   ..++.+.++|+.+ ++  ++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~nv~~~~~D~~~~l~~~~~  125 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG---FQNINVLRGNAMKFLPNFFE  125 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST---TTTEEEEECCTTSCGGGTSC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC---CCcEEEEeccHHHHHHHhcc
Confidence            467999999999999999999988789999999999999999887654        3   3579999999976 44  55


Q ss_pred             CCceeEEEecccccccCCh-------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          130 SSSIDAVHAGAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~-------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+.+|.|++.     ++++             ..+++++.++|+|||.|++.+.
T Consensus       126 ~~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          126 KGQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             TTCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence            6789999853     3333             3789999999999999999653

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.65  E-value=1.9e-15  Score=120.15  Aligned_cols=126  Identities=14%  Similarity=0.091  Sum_probs=94.3

Q ss_pred             CCCCHHHHHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           43 FPGPEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        43 ~~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      ++......+.+.+.+. ..++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.|++++..++.. ..++++++.
T Consensus       134 f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~-~~~v~~i~~  210 (332)
T 2igt_A          134 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLE-QAPIRWICE  210 (332)
T ss_dssp             CGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCT-TSCEEEECS
T ss_pred             chHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCC-ccceEEEEC
Confidence            3444445555666553 33467999999999999999999875  9999999999999999998876541 124899999


Q ss_pred             ccccCCC----CCCceeEEEecccc----------cccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          122 DISRLPF----ASSSIDAVHAGAAI----------HCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       122 d~~~~~~----~~~~~D~i~~~~~l----------~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      |+.+...    ..++||+|+++-..          ++..+...+++.+.++|+|||.+++....
T Consensus       211 D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          211 DAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             CHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             cHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            9976421    14689999995431          22234468899999999999998776654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.64  E-value=5.4e-15  Score=111.51  Aligned_cols=119  Identities=21%  Similarity=0.270  Sum_probs=93.3

Q ss_pred             HHHHHHHhhcC--CCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCC--CCCCCeeEEecc
Q 026688           48 KEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN--FPKENFLLVRAD  122 (235)
Q Consensus        48 ~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~d  122 (235)
                      .....+.+.+.  ..++.+|||+|||+|..+..+++. ++..+|+++|+++.+++.+++++...+.  ....++.+...|
T Consensus        62 ~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  141 (226)
T 1i1n_A           62 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD  141 (226)
T ss_dssp             HHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC
Confidence            34445555554  556889999999999999999987 4556999999999999999998876421  002378999999


Q ss_pred             cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       123 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +...+...+.||+|++...++++      ++++.++|+|||.+++.....
T Consensus       142 ~~~~~~~~~~fD~i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          142 GRMGYAEEAPYDAIHVGAAAPVV------PQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             GGGCCGGGCCEEEEEECSBBSSC------CHHHHHTEEEEEEEEEEESCT
T ss_pred             cccCcccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEecC
Confidence            98655446789999998888765      468899999999999987653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.64  E-value=1.3e-16  Score=135.76  Aligned_cols=106  Identities=17%  Similarity=0.239  Sum_probs=88.7

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--CCCCCceeEEEec
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~i~~~  139 (235)
                      +.+|||||||.|.++..+++.+.  .|+|+|+++.+++.|+.+....+   ..++++.+.+++++  +...++||+|+|.
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEENP---DFAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTST---TSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhcC---CCceEEEECCHHHHhhhccCCCccEEEEC
Confidence            68999999999999999999986  99999999999999999987654   34799999999886  3456789999999


Q ss_pred             ccccccCChH--HHHHHHHHhccCCcEEEEEEecc
Q 026688          140 AAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       140 ~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .+++|++++.  ..+..+.+.|+++|..++.....
T Consensus       142 e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~  176 (569)
T 4azs_A          142 SVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV  176 (569)
T ss_dssp             SCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred             cchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence            9999999885  33556777888887666655443

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.64  E-value=8.6e-16  Score=114.64  Aligned_cols=105  Identities=14%  Similarity=0.134  Sum_probs=86.3

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~  138 (235)
                      ++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++++...+.  ..++++..+|..+. +...+ ||+|++
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~-fD~v~~  132 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL--IDRVELQVGDPLGIAAGQRD-IDILFM  132 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG--GGGEEEEESCHHHHHTTCCS-EEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CceEEEEEecHHHHhccCCC-CCEEEE
Confidence            468999999999999999998865 67999999999999999999876553  34699999999763 43345 999998


Q ss_pred             cccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ...   ..+...+++++.++|+|||.+++.+..
T Consensus       133 ~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~  162 (210)
T 3c3p_A          133 DCD---VFNGADVLERMNRCLAKNALLIAVNAL  162 (210)
T ss_dssp             ETT---TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred             cCC---hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence            633   345678999999999999999986543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.64  E-value=7e-16  Score=116.29  Aligned_cols=118  Identities=14%  Similarity=0.100  Sum_probs=91.6

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P  127 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~  127 (235)
                      .+.+.......++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...+.  ..++++.++|+.+. +
T Consensus        53 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~  130 (225)
T 3tr6_A           53 AQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL--SDKIGLRLSPAKDTLA  130 (225)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeCCHHHHHH
Confidence            33333333334578999999999999999999865 67999999999999999999987664  34699999998653 2


Q ss_pred             -CCC----CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          128 -FAS----SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       128 -~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                       ...    ++||+|++...   ..+...+++.+.++|+|||.+++.+...
T Consensus       131 ~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~  177 (225)
T 3tr6_A          131 ELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR  177 (225)
T ss_dssp             HHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             HhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence             111    78999996553   2345678999999999999999876553

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.63  E-value=6e-15  Score=114.32  Aligned_cols=106  Identities=18%  Similarity=0.166  Sum_probs=90.5

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      ..++.+|||+|||+|.++..+++..+..+|+++|+++.+++.|++++..++   ..++.+.++|+.+.+. .+.||+|++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~---l~~~~~~~~d~~~~~~-~~~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK---LNNVIPILADNRDVEL-KDVADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT---CSSEEEEESCGGGCCC-TTCEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEECChHHcCc-cCCceEEEE
Confidence            345789999999999999999998766799999999999999999998765   3478899999988733 568999998


Q ss_pred             cccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ....    +...++..+.+.|+|||.+++.....
T Consensus       193 d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          193 GYVH----KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             CCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            7553    55678999999999999999888764

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.63  E-value=3.2e-15  Score=116.98  Aligned_cols=107  Identities=16%  Similarity=0.156  Sum_probs=86.8

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--CCCCCceeEEEec
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~i~~~  139 (235)
                      +.+|||||||+|.++..+++..+..+++++|+++.+++.|++++....   ..+++++.+|..+.  ..+.++||+|++.
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~---~~rv~v~~~Da~~~l~~~~~~~fDvIi~D  166 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR---APRVKIRVDDARMVAESFTPASRDVIIRD  166 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC---TTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC---CCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence            359999999999999999998777899999999999999999876432   46899999998764  2345789999986


Q ss_pred             ccccccCC----hHHHHHHHHHhccCCcEEEEEEec
Q 026688          140 AAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       140 ~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ...+....    ...+++.++++|+|||.+++....
T Consensus       167 ~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          167 VFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             CSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            54332211    257899999999999999987764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.63  E-value=5.5e-15  Score=111.54  Aligned_cols=118  Identities=19%  Similarity=0.244  Sum_probs=93.2

Q ss_pred             HHHHHHHhhc--CCCCCCeEEEecCCCchHHHHHHHcC-----CCceEEEEeCCHHHHHHHHHHhhhcCC--CCCCCeeE
Q 026688           48 KEFELMKGYL--KPVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQESN--FPKENFLL  118 (235)
Q Consensus        48 ~~~~~i~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~  118 (235)
                      .....+.+.+  ...++.+|||+|||+|.++..+++..     +..+|+++|+++.+++.|++++...+.  ....++++
T Consensus        65 ~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  144 (227)
T 2pbf_A           65 HMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKI  144 (227)
T ss_dssp             HHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEE
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEE
Confidence            3444555555  35567899999999999999999875     456999999999999999998876531  00137899


Q ss_pred             EecccccCC----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          119 VRADISRLP----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       119 ~~~d~~~~~----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ...|+.+..    ...++||+|++...++++      ++++.++|+|||.+++....
T Consensus       145 ~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          145 IHKNIYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             EECCGGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred             EECChHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence            999998754    445789999999888865      47889999999999998764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.62  E-value=2e-15  Score=115.35  Aligned_cols=110  Identities=12%  Similarity=0.070  Sum_probs=88.9

Q ss_pred             cCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C-C-----
Q 026688           57 LKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-----  128 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----  128 (235)
                      +...++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++++...+.  ..++++..+|+.+. + +     
T Consensus        75 ~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~l~~~~~  152 (247)
T 1sui_A           75 LKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPVLDEMIKDEK  152 (247)
T ss_dssp             HHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHSGG
T ss_pred             HHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCeEEEECCHHHHHHHHHhccC
Confidence            3334468999999999999999999865 67999999999999999999887654  35799999998653 2 1     


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +.++||+|++...   ..+...+++.+.++|+|||.+++....
T Consensus       153 ~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~  192 (247)
T 1sui_A          153 NHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL  192 (247)
T ss_dssp             GTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred             CCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence            1478999998654   235578899999999999999986543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.62  E-value=1.3e-14  Score=112.56  Aligned_cols=109  Identities=14%  Similarity=0.117  Sum_probs=86.0

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--CCCCCCCeeEEeccccc-CCCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISR-LPFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~d~~~-~~~~~~~~D~i~  137 (235)
                      .+.+|||+|||+|.++..++++.+..+++++|+++.+++.|++++...  +. ..++++++.+|..+ ++...++||+|+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~-~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL-DDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT-TSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            468999999999999999998755679999999999999999987542  11 14689999999876 233357899999


Q ss_pred             ecccccccCC----hHHHHHHHHHhccCCcEEEEEEe
Q 026688          138 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       138 ~~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +.......+.    ...+++.+.++|+|||.+++...
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            9655432221    25789999999999999998753

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.61  E-value=1.6e-14  Score=119.56  Aligned_cols=123  Identities=18%  Similarity=0.194  Sum_probs=97.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      .....+...+...++.+|||+|||+|..+..+++..+. ..|+++|+++.+++.+++++...+   ..++.+.+.|+...
T Consensus       246 ~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~  322 (450)
T 2yxl_A          246 EASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG---IKIVKPLVKDARKA  322 (450)
T ss_dssp             HHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCTTCC
T ss_pred             chhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEEEcChhhc
Confidence            33445556667777899999999999999999987654 699999999999999999988765   34799999999876


Q ss_pred             C--CCCCceeEEEec------ccccccCCh----------------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          127 P--FASSSIDAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       127 ~--~~~~~~D~i~~~------~~l~~~~~~----------------~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +  ++.++||+|++.      .++.+.++.                ..+++++.++|+|||.+++++.+..
T Consensus       323 ~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          323 PEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             SSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             chhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            5  444789999973      233333332                4689999999999999999987653

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.61  E-value=3.9e-15  Score=123.71  Aligned_cols=115  Identities=15%  Similarity=0.248  Sum_probs=93.7

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      .+.+.+.+...++.+|||+|||+|.++..+++.+ ..+|+++|+|+ +++.|++++...++  ..+++++.+|+.+.+++
T Consensus       147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~s~-~l~~A~~~~~~~gl--~~~v~~~~~d~~~~~~~  222 (480)
T 3b3j_A          147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNNL--TDRIVVIPGKVEEVSLP  222 (480)
T ss_dssp             HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEECHH-HHHHHHHHHHHTTC--TTTEEEEESCTTTCCCS
T ss_pred             HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEcHH-HHHHHHHHHHHcCC--CCcEEEEECchhhCccC
Confidence            3455555555567899999999999999998853 46999999998 99999998887664  45899999999887654


Q ss_pred             CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEE
Q 026688          130 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~  169 (235)
                       ++||+|++...++|+.+.  ...+.++.++|+|||.+++..
T Consensus       223 -~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          223 -EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             -SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             -CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence             689999998887877654  467778899999999998644

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.61  E-value=1.6e-14  Score=107.63  Aligned_cols=157  Identities=9%  Similarity=-0.028  Sum_probs=109.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      .....+++.   .++.+|||+|||+|-++..+.   +...|+++|+|+.+++.+++.+...    ..+..+...|+...+
T Consensus        95 ~fY~~i~~~---~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~----g~~~~~~v~D~~~~~  164 (253)
T 3frh_A           95 TLYDFIFSA---ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK----DWDFTFALQDVLCAP  164 (253)
T ss_dssp             HHHHHHTSS---CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT----TCEEEEEECCTTTSC
T ss_pred             HHHHHHhcC---CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeecccCC
Confidence            334444444   447899999999999999888   5679999999999999999998765    347889999998876


Q ss_pred             CCCCceeEEEecccccccCChH-HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688          128 FASSSIDAVHAGAAIHCWSSPS-TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  206 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~-~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (235)
                      ++ +.||+|++.-++||+.+.+ ....++.+.|+++|.+ ++.++..-. ...+              .+...-...|++
T Consensus       165 ~~-~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vv-VsfPtksl~-Gr~~--------------gm~~~Y~~~~e~  227 (253)
T 3frh_A          165 PA-EAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMA-VSFPTRSLG-GRGK--------------GMEANYAAWFEG  227 (253)
T ss_dssp             CC-CBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEE-EEEECC--------------------------CHHHHHHH
T ss_pred             CC-CCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEE-EEcChHHhc-CCCc--------------chhhHHHHHHHH
Confidence            54 6899999999999886542 3444888899997554 444433210 0000              011122344555


Q ss_pred             HHHHcCCceeEEEeeCcEEEEEEecC
Q 026688          207 LCRACGLVDFKCTRNRGFVMFTATKP  232 (235)
Q Consensus       207 ~l~~~Gf~~~~~~~~~~~~~~~~~k~  232 (235)
                      .+ ...+.+++...++.=.+++.+|.
T Consensus       228 ~~-~~~~~~~~~~~~~nEl~~~i~~~  252 (253)
T 3frh_A          228 GL-PAEFEIEDKKTIGTELIYLIKKN  252 (253)
T ss_dssp             HS-CTTEEEEEEEEETTEEEEEEEEC
T ss_pred             Hh-hccchhhhheecCceEEEEEecC
Confidence            55 45577788888887777777764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.61  E-value=4.3e-15  Score=119.25  Aligned_cols=102  Identities=20%  Similarity=0.331  Sum_probs=85.8

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec-
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-  139 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~-  139 (235)
                      ++++|||||||+|.++...++.+. .+|+++|.|+ +++.|++.+..+++  ..+++++.+|++++.++ +++|+|++- 
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~~--~~~i~~i~~~~~~~~lp-e~~DvivsE~  157 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNGL--EDRVHVLPGPVETVELP-EQVDAIVSEW  157 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTTC--TTTEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcCC--CceEEEEeeeeeeecCC-ccccEEEeec
Confidence            478999999999999999888875 4899999986 88999998888876  56899999999988766 689999983 


Q ss_pred             --ccccccCChHHHHHHHHHhccCCcEEEE
Q 026688          140 --AAIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       140 --~~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                        ..+.+......++....+.|+|||.++-
T Consensus       158 ~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          158 MGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccccccchhhhHHHHHHhhCCCCceECC
Confidence              4455445567888888999999999874

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.61  E-value=2.2e-14  Score=106.15  Aligned_cols=99  Identities=15%  Similarity=0.286  Sum_probs=78.2

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCC--CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---------
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGL--FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------  127 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------  127 (235)
                      ..++.+|||+|||+|.++..++++.+  ..+|+|+|+++..           .   ..++.+.++|+.+.+         
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~---~~~v~~~~~d~~~~~~~~~~~~~~   85 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P---IPNVYFIQGEIGKDNMNNIKNINY   85 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C---CTTCEEEECCTTTTSSCCC-----
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C---CCCceEEEccccchhhhhhccccc
Confidence            34578999999999999999999876  5799999999831           0   346889999998765         


Q ss_pred             ----------------CCCCceeEEEecccccccC----Ch-------HHHHHHHHHhccCCcEEEEEEec
Q 026688          128 ----------------FASSSIDAVHAGAAIHCWS----SP-------STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ----------------~~~~~~D~i~~~~~l~~~~----~~-------~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                                      ++.++||+|++...+++..    +.       ..+++++.++|+|||.+++..+.
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence                            4567899999988776532    11       13788999999999999987654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.61  E-value=4e-15  Score=115.46  Aligned_cols=119  Identities=17%  Similarity=0.136  Sum_probs=94.4

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC--
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--  128 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~--  128 (235)
                      .+...+...++.+|||+|||+|..+..+++..+. .+|+++|+++.+++.+++++...+   ..++++.+.|+.+.+.  
T Consensus        74 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           74 IPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG---VLNTIIINADMRKYKDYL  150 (274)
T ss_dssp             HHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCHHHHHHHH
T ss_pred             HHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC---CCcEEEEeCChHhcchhh
Confidence            3445556667899999999999999999986544 699999999999999999988765   3479999999987643  


Q ss_pred             --CCCceeEEEecccc------c------------ccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          129 --ASSSIDAVHAGAAI------H------------CWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       129 --~~~~~D~i~~~~~l------~------------~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                        ..+.||+|++...+      .            .......+++++.++|+|||.+++++.+..
T Consensus       151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~  215 (274)
T 3ajd_A          151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME  215 (274)
T ss_dssp             HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence              25689999986322      1            113346889999999999999999987654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.61  E-value=1.2e-13  Score=102.76  Aligned_cols=141  Identities=14%  Similarity=0.117  Sum_probs=102.2

Q ss_pred             CCCCHHHHHHHHhhc---CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEE
Q 026688           43 FPGPEKEFELMKGYL---KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  119 (235)
Q Consensus        43 ~~~~~~~~~~i~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~  119 (235)
                      ++.+....+.+...+   ...++.+|||+|||+|.++..+++.+. .+++|+|+++.+++.+++++...+.    ++++.
T Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~  102 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKG----KFKVF  102 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTT----SEEEE
T ss_pred             ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCC----CEEEE
Confidence            444566655555443   344578999999999999999998853 4799999999999999999876542    78999


Q ss_pred             ecccccCCCCCCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCcee
Q 026688          120 RADISRLPFASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT  197 (235)
Q Consensus       120 ~~d~~~~~~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (235)
                      ++|+.+.+   .+||+|+++..+++...  ...+++.+.+++  |+ +++......                        
T Consensus       103 ~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~-~~~~~~~~~------------------------  152 (207)
T 1wy7_A          103 IGDVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DV-VYSIHLAKP------------------------  152 (207)
T ss_dssp             ESCGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SE-EEEEEECCH------------------------
T ss_pred             ECchHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--Cc-EEEEEeCCc------------------------
Confidence            99998864   48999999988776642  247888898888  44 443331110                        


Q ss_pred             ecCHHHHHHHHHHcCCceeEEE
Q 026688          198 FLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       198 ~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                       -+.+.+.+.+++.||+...+.
T Consensus       153 -~~~~~~~~~l~~~g~~~~~~~  173 (207)
T 1wy7_A          153 -EVRRFIEKFSWEHGFVVTHRL  173 (207)
T ss_dssp             -HHHHHHHHHHHHTTEEEEEEE
T ss_pred             -CCHHHHHHHHHHCCCeEEEEE
Confidence             123456677888898764443

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.60  E-value=1.2e-15  Score=115.91  Aligned_cols=109  Identities=16%  Similarity=0.114  Sum_probs=84.5

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ..+.+.+...++.+|||||||+|..+..+++.    .+.++|+++|+++.+++.|+.    .    ..+++++++|+.+.
T Consensus        71 ~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~----~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           71 AVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D----MENITLHQGDCSDL  142 (236)
T ss_dssp             HHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G----CTTEEEEECCSSCS
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c----CCceEEEECcchhH
Confidence            33333333334689999999999999999987    567799999999999888862    1    35799999999874


Q ss_pred             ---CCCC-CceeEEEecccccccCChHHHHHHHHH-hccCCcEEEEEEe
Q 026688          127 ---PFAS-SSIDAVHAGAAIHCWSSPSTGVAEISR-VLRPGGVFVGTTY  170 (235)
Q Consensus       127 ---~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~-~L~pgG~li~~~~  170 (235)
                         +... .+||+|++...  | .+...++.++.+ +|+|||.+++.+.
T Consensus       143 ~~l~~~~~~~fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          143 TTFEHLREMAHPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             GGGGGGSSSCSSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             HHHHhhccCCCCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence               4323 37999998665  3 366788999997 9999999998664

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.60  E-value=2.9e-14  Score=111.73  Aligned_cols=109  Identities=12%  Similarity=0.049  Sum_probs=83.4

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh--cCCCCCCCeeEEeccccc-CCCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--ESNFPKENFLLVRADISR-LPFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~~~~~~~~~~~~d~~~-~~~~~~~~D~i~  137 (235)
                      .+.+|||+|||+|..+..+++..+..+|+++|+|+.+++.|++++..  .+. ...++++..+|+.+ ++...++||+|+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF-DDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHHhhCCCCceEEE
Confidence            35899999999999999999886667999999999999999998753  111 13589999999865 333357899999


Q ss_pred             ecccccccC-----ChHHHHHHHHHhccCCcEEEEEEe
Q 026688          138 AGAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       138 ~~~~l~~~~-----~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +.....+..     ....+++.+.++|+|||.+++...
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence            854322111     125889999999999999998753

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.60  E-value=8.1e-14  Score=112.72  Aligned_cols=106  Identities=17%  Similarity=0.068  Sum_probs=86.9

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCC-CCCceeEEE
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVH  137 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~~D~i~  137 (235)
                      .++.+|||+| |+|.++..+++.++..+|+++|+++.+++.|++++...+.   .+++++.+|+.+ ++. ..++||+|+
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY---EDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC---CCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCEEEEEChhhhhchhhccCCccEEE
Confidence            3578999999 9999999999888767999999999999999999987653   279999999987 553 346899999


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEE-EEEEe
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVF-VGTTY  170 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l-i~~~~  170 (235)
                      ++..++... ...+++++.++|+|||.+ ++...
T Consensus       247 ~~~p~~~~~-~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          247 TDPPETLEA-IRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             ECCCSSHHH-HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             ECCCCchHH-HHHHHHHHHHHcccCCeEEEEEEe
Confidence            986654332 468899999999999954 55443

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.60  E-value=1.8e-14  Score=109.62  Aligned_cols=121  Identities=20%  Similarity=0.211  Sum_probs=93.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .....+.+...+...++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++++...+.  ..++.+..+|+.
T Consensus        45 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~v~~~~~d~~  122 (239)
T 2hnk_A           45 SPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL--ENKIFLKLGSAL  122 (239)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHH
T ss_pred             CHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHH
Confidence            334445555555445578999999999999999999865 57999999999999999999877653  235899999986


Q ss_pred             cC-C--------------CC-C-CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          125 RL-P--------------FA-S-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       125 ~~-~--------------~~-~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +. +              ++ . ++||+|++.....   +...+++.+.++|+|||.+++....
T Consensus       123 ~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~  183 (239)
T 2hnk_A          123 ETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE---NYPNYYPLILKLLKPGGLLIADNVL  183 (239)
T ss_dssp             HHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG---GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             HHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH---HHHHHHHHHHHHcCCCeEEEEEccc
Confidence            52 2              11 1 6899999875433   3457899999999999999987643

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.60  E-value=2.4e-14  Score=113.04  Aligned_cols=111  Identities=16%  Similarity=0.109  Sum_probs=87.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCC--CCCCCeeEEecccccC-CCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--FPKENFLLVRADISRL-PFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~d~~~~-~~~~~~~D~i~  137 (235)
                      .+.+|||+|||+|..+..+++..+..+++++|+++.+++.|++++...+.  ....++++..+|+.+. +...++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            46899999999999999999886667999999999999999998754110  0135799999999763 33457899999


Q ss_pred             ecccccc-cCC------hHHHHHHHHHhccCCcEEEEEEec
Q 026688          138 AGAAIHC-WSS------PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       138 ~~~~l~~-~~~------~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +....+. ...      ...+++.+.++|+|||.+++....
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence            9766543 111      258899999999999999987543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.60  E-value=4.4e-14  Score=108.90  Aligned_cols=137  Identities=15%  Similarity=0.141  Sum_probs=106.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ....+.+.+.+  +.+|||+|||+|.++..+++.+. ++|+++|++|.+++.+++++..++.  ..+++++++|..+.+ 
T Consensus       115 er~ri~~~~~~--g~~VlD~~aG~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~N~v--~~~v~~~~~D~~~~~-  188 (278)
T 3k6r_A          115 ERVRMAKVAKP--DELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFP-  188 (278)
T ss_dssp             HHHHHHHHCCT--TCEEEETTCTTTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCC-
T ss_pred             HHHHHHHhcCC--CCEEEEecCcCcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCcHHHhc-
Confidence            34556666655  88999999999999999998863 5899999999999999999998876  457999999998865 


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      ..+.||.|+++..    +....++..+.++|+|||+|.+........                    ......+.+++.+
T Consensus       189 ~~~~~D~Vi~~~p----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~--------------------~~~~~~e~i~~~~  244 (278)
T 3k6r_A          189 GENIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL--------------------MPREPFETFKRIT  244 (278)
T ss_dssp             CCSCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG--------------------TTTTTHHHHHHHH
T ss_pred             cccCCCEEEECCC----CcHHHHHHHHHHHcCCCCEEEEEeeecccc--------------------cchhHHHHHHHHH
Confidence            3578999997532    334578899999999999998876553210                    0012346677888


Q ss_pred             HHcCCce
Q 026688          209 RACGLVD  215 (235)
Q Consensus       209 ~~~Gf~~  215 (235)
                      ++.|+.+
T Consensus       245 ~~~g~~v  251 (278)
T 3k6r_A          245 KEYGYDV  251 (278)
T ss_dssp             HHTTCEE
T ss_pred             HHcCCcE
Confidence            8999875

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.60  E-value=1.1e-14  Score=110.01  Aligned_cols=118  Identities=19%  Similarity=0.305  Sum_probs=91.3

Q ss_pred             HHHHHHHHhhc--CCCCCCeEEEecCCCchHHHHHHHcCC------CceEEEEeCCHHHHHHHHHHhhhcCC--CCCCCe
Q 026688           47 EKEFELMKGYL--KPVLGGNIIDASCGSGLFSRIFAKSGL------FSLVVALDYSENMLKQCYEFVQQESN--FPKENF  116 (235)
Q Consensus        47 ~~~~~~i~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~------~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~  116 (235)
                      ......+.+.+  ...++.+|||+|||+|.++..+++...      ..+|+++|+++.+++.+++++...+.  ....++
T Consensus        68 p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v  147 (227)
T 1r18_A           68 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL  147 (227)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence            34455566666  355678999999999999999988532      25899999999999999998765320  001368


Q ss_pred             eEEecccccCCCCC-CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          117 LLVRADISRLPFAS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       117 ~~~~~d~~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ++...|..+ +++. ++||+|++...++++.      +++.+.|+|||.+++....
T Consensus       148 ~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          148 LIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             EEEESCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred             EEEECCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence            999999977 3333 7899999999988764      6789999999999998764

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.59  E-value=5.7e-15  Score=111.88  Aligned_cols=108  Identities=14%  Similarity=0.051  Sum_probs=87.0

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----CCCC--Cc
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFAS--SS  132 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~--~~  132 (235)
                      .++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.|++++...+.  ..++++..+|+.+.    +...  ++
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV--AEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            3468999999999999999998865 57999999999999999999877653  34699999997542    2222  68


Q ss_pred             eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ||+|++....   .+...+++++.++|+|||.+++.+...
T Consensus       149 fD~V~~d~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~~  185 (232)
T 3cbg_A          149 FDLIFIDADK---RNYPRYYEIGLNLLRRGGLMVIDNVLW  185 (232)
T ss_dssp             EEEEEECSCG---GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred             cCEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            9999986542   345688999999999999999876543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.58  E-value=5.2e-14  Score=111.36  Aligned_cols=110  Identities=13%  Similarity=0.123  Sum_probs=85.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--CCCCCCCeeEEecccccC-CCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISRL-PFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~  137 (235)
                      .+.+|||+|||+|..+..+++..+..+|+++|+|+.+++.|++++...  +. ...++++..+|..+. +...++||+|+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG-GSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-CCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            468999999999999999998766679999999999999999987642  11 035799999998663 22357899999


Q ss_pred             ecccccccC--C--hHHHHHHHHHhccCCcEEEEEEec
Q 026688          138 AGAAIHCWS--S--PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       138 ~~~~l~~~~--~--~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +......-+  .  ...+++.+.++|+|||.+++...+
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            865321111  1  158899999999999999987543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.58  E-value=7e-15  Score=111.10  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=91.7

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ...+.+.......++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.|++++...+.  ..++++..+|+.+.
T Consensus        56 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~  133 (229)
T 2avd_A           56 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALET  133 (229)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CCeEEEEEcCHHHH
Confidence            3334444444444578999999999999999998755 57999999999999999999887654  35799999998653


Q ss_pred             -C-CCC----CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 -P-FAS----SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 -~-~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                       + +..    ++||+|++...   ..+...+++.+.++|+|||.+++.+..
T Consensus       134 ~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          134 LDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             HHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             HHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence             1 111    68999998654   234468899999999999999986654

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.57  E-value=8.6e-15  Score=111.23  Aligned_cols=109  Identities=15%  Similarity=0.142  Sum_probs=87.6

Q ss_pred             cCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C-C-----
Q 026688           57 LKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-----  128 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----  128 (235)
                      +...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.|++++...+.  ..++++..+|..+. + +     
T Consensus        66 ~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~l~~~~~  143 (237)
T 3c3y_A           66 LKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV--EHKINFIESDAMLALDNLLQGQE  143 (237)
T ss_dssp             HHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHSTT
T ss_pred             HHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHhccC
Confidence            3334478999999999999999999865 67999999999999999999887654  34799999998653 2 2     


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +.++||+|++....   .+...+++.+.++|+|||.+++...
T Consensus       144 ~~~~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          144 SEGSYDFGFVDADK---PNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             CTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             CCCCcCEEEECCch---HHHHHHHHHHHHhcCCCeEEEEecC
Confidence            14789999986432   2346889999999999999988654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.57  E-value=4.2e-15  Score=118.86  Aligned_cols=112  Identities=16%  Similarity=0.111  Sum_probs=88.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCC------CchHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeE
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCG------SGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL  118 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G------~G~~~~~l~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~  118 (235)
                      ....++.++..+.. ++.+|||||||      +|..+..+++ ..|.++|+|+|+|+.+.       ..     ..++++
T Consensus       202 y~~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~-----~~rI~f  268 (419)
T 3sso_A          202 FTPHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VD-----ELRIRT  268 (419)
T ss_dssp             CHHHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GC-----BTTEEE
T ss_pred             HHHHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hc-----CCCcEE
Confidence            45566777666553 36899999999      6666665555 45778999999999872       11     458999


Q ss_pred             EecccccCCCC------CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          119 VRADISRLPFA------SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       119 ~~~d~~~~~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +++|+.++++.      .++||+|++.. .+++.+....++++.++|||||.+++.+..
T Consensus       269 v~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          269 IQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             EECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             EEecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            99999987765      58999999875 466677789999999999999999998876

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.57  E-value=2.5e-14  Score=112.70  Aligned_cols=108  Identities=11%  Similarity=0.077  Sum_probs=82.6

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--CCCCCCCeeEEecccccC-CCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISRL-PFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~  137 (235)
                      .+.+|||+|||+|..+..+++..+..+|+++|+++.+++.|++++...  +. ...++++..+|+.+. +...++||+|+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~-~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF-SHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG-GCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcccc-CCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            368999999999999999998866779999999999999999988642  11 135799999998763 33457899999


Q ss_pred             ecccccccCCh----HHHHHHHHHhccCCcEEEEEE
Q 026688          138 AGAAIHCWSSP----STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       138 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +....+..+..    ..+++.+.++|+|||.+++..
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            86543221111    578999999999999999865

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.56  E-value=2.2e-14  Score=113.88  Aligned_cols=109  Identities=18%  Similarity=0.169  Sum_probs=85.5

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--CCCCCCCeeEEecccccC--CCCCCceeE
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISRL--PFASSSIDA  135 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~d~~~~--~~~~~~~D~  135 (235)
                      ..+.+|||||||+|..+..+++..+..+|+++|+|+.+++.|++++...  +. ...++++..+|+.+.  ..+.++||+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl-~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-EDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-CCCcEEEEECCHHHHHHhccCCCccE
Confidence            3468999999999999999998866679999999999999999987642  11 035799999998763  233578999


Q ss_pred             EEecccccc--cCC--hHHHHHHHHHhccCCcEEEEEE
Q 026688          136 VHAGAAIHC--WSS--PSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       136 i~~~~~l~~--~~~--~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      |++......  ...  ...+++.+.++|+|||.+++..
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            998654211  111  2588999999999999999864

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.56  E-value=2.8e-13  Score=100.15  Aligned_cols=104  Identities=14%  Similarity=0.127  Sum_probs=78.4

Q ss_pred             CCCHHHHHHHHhhc---CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688           44 PGPEKEFELMKGYL---KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  120 (235)
Q Consensus        44 ~~~~~~~~~i~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (235)
                      +.+....+.+...+   ...++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.+++++.        ++++.+
T Consensus        31 ~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~  101 (200)
T 1ne2_A           31 PTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNCG--------GVNFMV  101 (200)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCT--------TSEEEE
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhcC--------CCEEEE
Confidence            33445445554433   34457899999999999999999873 3479999999999999998753        688999


Q ss_pred             cccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhc
Q 026688          121 ADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVL  159 (235)
Q Consensus       121 ~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L  159 (235)
                      +|+.+++   ++||+|+++..+++..+.  ..+++++.+.+
T Consensus       102 ~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          102 ADVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             CCGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE
T ss_pred             CcHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc
Confidence            9998864   689999999999888653  47889999988

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.56  E-value=8.5e-14  Score=108.29  Aligned_cols=108  Identities=12%  Similarity=0.060  Sum_probs=83.7

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--CC------CCCCCeeEEecccccC-CCCCC
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SN------FPKENFLLVRADISRL-PFASS  131 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~------~~~~~~~~~~~d~~~~-~~~~~  131 (235)
                      .+.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++ ..  +.      ....++++..+|..+. +. .+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            4689999999999999999988 6679999999999999999987 32  10      0146899999998653 22 57


Q ss_pred             ceeEEEecccccccC--C--hHHHHHHHHHhccCCcEEEEEEec
Q 026688          132 SIDAVHAGAAIHCWS--S--PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~--~--~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +||+|++....+..+  .  ...+++.+.++|+|||.+++....
T Consensus       152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  195 (281)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            899999865532211  1  257899999999999999987543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.56  E-value=1.9e-14  Score=112.24  Aligned_cols=115  Identities=12%  Similarity=0.107  Sum_probs=87.8

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.+++++...+.  ..+++++++|+.+
T Consensus        13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~D~~~   88 (285)
T 1zq9_A           13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPV--ASKLQVLVGDVLK   88 (285)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTT--GGGEEEEESCTTT
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcceec
Confidence            456778888888877789999999999999999999875  999999999999999998865432  2479999999988


Q ss_pred             CCCCCCceeEEEecccc-----------cccCChHHHH----HHH--HHhccCCcEEE
Q 026688          126 LPFASSSIDAVHAGAAI-----------HCWSSPSTGV----AEI--SRVLRPGGVFV  166 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l-----------~~~~~~~~~l----~~~--~~~L~pgG~li  166 (235)
                      .+++  .||+|+++..+           +|.++....+    +++  +++++|||.++
T Consensus        89 ~~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           89 TDLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             SCCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             ccch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            7654  79999996443           3333221110    233  36899999653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.56  E-value=1e-13  Score=107.98  Aligned_cols=111  Identities=14%  Similarity=0.142  Sum_probs=86.4

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCC-CCCCCeeEEecccccC-CCCCCceeEEE
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRADISRL-PFASSSIDAVH  137 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~~~D~i~  137 (235)
                      ..+.+|||+|||+|..+..+++..+..+++++|+++.+++.|++++...+. ...+++++...|..+. +...++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            346899999999999999999887677999999999999999998754210 0135799999998763 22257899999


Q ss_pred             ecccccccCCh----HHHHHHHHHhccCCcEEEEEEe
Q 026688          138 AGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       138 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +.....+.+..    ..+++.+.++|+|||.+++...
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            86543322221    5889999999999999998754

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.55  E-value=1.6e-13  Score=105.48  Aligned_cols=99  Identities=12%  Similarity=0.095  Sum_probs=81.8

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--CCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      .+.+|||+|||+|..+..+++. + .+++++|+++.+++.|++++...  +. ..+++++..+|..+..   ++||+|++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~-~~~rv~~~~~D~~~~~---~~fD~Ii~  145 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVK-NNKNFTHAKQLLDLDI---KKYDLIFC  145 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHH-TCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhcccc-CCCeEEEEechHHHHH---hhCCEEEE
Confidence            4689999999999999999988 6 79999999999999999876431  11 1457999999987754   78999997


Q ss_pred             cccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .     ..++..+++.+.++|+|||.+++...
T Consensus       146 d-----~~dp~~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          146 L-----QEPDIHRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             S-----SCCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             C-----CCChHHHHHHHHHhcCCCcEEEEEcC
Confidence            5     34666789999999999999998643

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.55  E-value=2.7e-14  Score=112.18  Aligned_cols=111  Identities=13%  Similarity=0.095  Sum_probs=85.1

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh--cCCCCCCCeeEEeccccc-CCCCCCceeEE
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--ESNFPKENFLLVRADISR-LPFASSSIDAV  136 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~~~~~~~~~~~~d~~~-~~~~~~~~D~i  136 (235)
                      ..+.+|||+|||+|..+..++++.+..+++++|+++.+++.|++++..  .+. ...+++++.+|..+ ++...++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~-~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY-SSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc-CCCcEEEEECcHHHHHhhCCCCceEE
Confidence            346899999999999999999887667999999999999999998764  111 03579999999866 33345789999


Q ss_pred             EecccccccCC----hHHHHHHHHHhccCCcEEEEEEec
Q 026688          137 HAGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       137 ~~~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ++....+..+.    ...+++++.++|+|||.+++....
T Consensus       173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            98654332211    246899999999999999987644

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.54  E-value=2.5e-13  Score=108.77  Aligned_cols=110  Identities=12%  Similarity=0.123  Sum_probs=88.6

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcCCC-----ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCc
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSGLF-----SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS  132 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  132 (235)
                      ...++.+|||+|||+|.++..+++..+.     ..++|+|+++.+++.|+.++...+.    ++.+.++|..... ....
T Consensus       127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~----~~~i~~~D~l~~~-~~~~  201 (344)
T 2f8l_A          127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ----KMTLLHQDGLANL-LVDP  201 (344)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC----CCEEEESCTTSCC-CCCC
T ss_pred             CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC----CceEEECCCCCcc-ccCC
Confidence            4445689999999999999998877532     6899999999999999998876542    5789999987633 3578


Q ss_pred             eeEEEecccccccCChH------------------HHHHHHHHhccCCcEEEEEEecc
Q 026688          133 IDAVHAGAAIHCWSSPS------------------TGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~------------------~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ||+|+++-.+.+++..+                  .++.++.+.|+|||.++++.+..
T Consensus       202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            99999997766554321                  57999999999999999988753

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.54  E-value=1.5e-13  Score=100.78  Aligned_cols=98  Identities=16%  Similarity=0.223  Sum_probs=74.5

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC-------C-
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-------S-  130 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~-  130 (235)
                      ..++.+|||+|||+|.++..++++  ...|+|+|+++..           .   ..+++++++|+.+.+..       . 
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~---~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------E---IAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------C---CTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------c---CCCeEEEEccccCHHHHHHHHHHhhc
Confidence            355789999999999999999988  4599999999741           1   34789999999875411       1 


Q ss_pred             ---CceeEEEecccccccC----C-------hHHHHHHHHHhccCCcEEEEEEecc
Q 026688          131 ---SSIDAVHAGAAIHCWS----S-------PSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       131 ---~~~D~i~~~~~l~~~~----~-------~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                         ++||+|++........    +       ...+++.+.++|+|||.+++..+..
T Consensus        87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence               4899999975432111    1       1467889999999999999887654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.54  E-value=6.3e-14  Score=115.36  Aligned_cols=123  Identities=20%  Similarity=0.193  Sum_probs=98.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .......+...+...++.+|||+|||+|..+..+++..+...|+++|+++.+++.+++++...+.    ++.+.+.|+.+
T Consensus       231 qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~----~~~~~~~D~~~  306 (429)
T 1sqg_A          231 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM----KATVKQGDGRY  306 (429)
T ss_dssp             CCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC----CCEEEECCTTC
T ss_pred             eCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC----CeEEEeCchhh
Confidence            34455566667777778999999999999999999988767999999999999999999887643    47889999987


Q ss_pred             CC--CCCCceeEEEec------ccccccCCh----------------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          126 LP--FASSSIDAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       126 ~~--~~~~~~D~i~~~------~~l~~~~~~----------------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .+  ++.++||+|++.      .++.+.++.                ..+++++.++|+|||.+++++.+.
T Consensus       307 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          307 PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             chhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            65  445789999973      233333332                377999999999999999998765

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.54  E-value=6.1e-14  Score=115.45  Aligned_cols=119  Identities=20%  Similarity=0.189  Sum_probs=93.4

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F  128 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~  128 (235)
                      ..+...+...++.+|||+|||+|..+..+++..+ .+.|+++|+++.+++.+++++...+.   . +.+.+.|+.+++ .
T Consensus        91 ~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~---~-v~~~~~Da~~l~~~  166 (464)
T 3m6w_A           91 QAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA---P-LAVTQAPPRALAEA  166 (464)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC---C-CEEECSCHHHHHHH
T ss_pred             HHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---e-EEEEECCHHHhhhh
Confidence            3445566677789999999999999999998754 36899999999999999999988763   3 889999987754 2


Q ss_pred             CCCceeEEEecc------cccccCCh----------------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          129 ASSSIDAVHAGA------AIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       129 ~~~~~D~i~~~~------~l~~~~~~----------------~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ..++||+|++.-      ++..-++.                ..+++++.++|+|||.|++++.+..
T Consensus       167 ~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~  233 (464)
T 3m6w_A          167 FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA  233 (464)
T ss_dssp             HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence            357899999632      22222221                4689999999999999999887653

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.53  E-value=1.9e-13  Score=113.52  Aligned_cols=120  Identities=16%  Similarity=0.124  Sum_probs=93.5

Q ss_pred             HHHHhhcCCC--CCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           51 ELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        51 ~~i~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      ..+...+...  ++.+|||+|||+|..+..+++... ...|+++|+++.+++.+++++...+   ..++.+.+.|+..++
T Consensus       105 ~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g---~~nv~~~~~D~~~~~  181 (479)
T 2frx_A          105 MLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG---ISNVALTHFDGRVFG  181 (479)
T ss_dssp             HHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCCSTTHH
T ss_pred             HHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHhh
Confidence            3344555555  789999999999999999998743 4699999999999999999998765   347899999998764


Q ss_pred             C-CCCceeEEEec------ccccccCC----------------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          128 F-ASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       128 ~-~~~~~D~i~~~------~~l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      . ..+.||.|++.      .++.+-++                ..++++++.++|||||.|++++.+..
T Consensus       182 ~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred             hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence            3 35789999983      22222222                13678999999999999999988654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.51  E-value=4.5e-14  Score=116.10  Aligned_cols=120  Identities=14%  Similarity=0.083  Sum_probs=93.0

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F  128 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~  128 (235)
                      ..+...+...++.+|||+|||+|..+..+++..+ ...|+++|+++.+++.+++++...+   ..++.+.+.|...++ .
T Consensus        95 ~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g---~~nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A           95 MIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG---VSNAIVTNHAPAELVPH  171 (456)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT---CSSEEEECCCHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhhh
Confidence            3445566677789999999999999999988643 4699999999999999999998876   347899999987754 2


Q ss_pred             CCCceeEEEeccc------ccccCC----------------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          129 ASSSIDAVHAGAA------IHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       129 ~~~~~D~i~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ..+.||+|++...      +..-++                ...+++++.++|+|||.|+.++.+..
T Consensus       172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  238 (456)
T 3m4x_A          172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA  238 (456)
T ss_dssp             HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred             ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence            3478999997432      111111                12679999999999999999988653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.50  E-value=3e-13  Score=109.60  Aligned_cols=106  Identities=14%  Similarity=0.034  Sum_probs=82.5

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEEEec
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~  139 (235)
                      ++.+|||+|||+|.++..+++.+.  .|+++|+|+.+++.+++++..++.    ...+.+.|+.+. +...+.||+|++.
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~----~~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGL----RVDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC----CCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCC----CCcEEEccHHHHHHHhcCCCCEEEEC
Confidence            478999999999999999999875  699999999999999999987754    235668888764 2112349999986


Q ss_pred             cccccc---------CChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          140 AAIHCW---------SSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       140 ~~l~~~---------~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .....-         .+...++..+.++|+|||.|++.+...
T Consensus       288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            443211         122478889999999999999877654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.50  E-value=1.7e-13  Score=111.12  Aligned_cols=110  Identities=14%  Similarity=0.104  Sum_probs=85.3

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCC-CeeEEecccccC-C-C--CCCcee
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRL-P-F--ASSSID  134 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~d~~~~-~-~--~~~~~D  134 (235)
                      .++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|++++..++.  .. +++++++|+.+. + .  ...+||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~n~~--~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHL--DMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTC--CCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCC--CccceEEEECCHHHHHHHHHHhCCCcc
Confidence            3478999999999999999998652 4899999999999999999988764  22 799999998763 2 1  235899


Q ss_pred             EEEecccc-----cccCCh----HHHHHHHHHhccCCcEEEEEEecc
Q 026688          135 AVHAGAAI-----HCWSSP----STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       135 ~i~~~~~l-----~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +|++.-..     .+..+.    ..+++.+.++|+|||.+++.....
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99986433     223332    356788899999999999887653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.48  E-value=3e-13  Score=99.53  Aligned_cols=100  Identities=18%  Similarity=0.248  Sum_probs=75.4

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCCC---------ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEE-ecccccCC-
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGLF---------SLVVALDYSENMLKQCYEFVQQESNFPKENFLLV-RADISRLP-  127 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~d~~~~~-  127 (235)
                      ..++.+|||+|||+|.++..+++..+.         .+|+++|+++..           .   ..++++. ..|+...+ 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~---~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P---LEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C---CTTCEEECSCCTTSHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c---CCCCeEEEeccCCCHHH
Confidence            345789999999999999999998543         689999999831           0   2367788 88876532 


Q ss_pred             -------CCCCceeEEEecccccc----cCCh-------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          128 -------FASSSIDAVHAGAAIHC----WSSP-------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       128 -------~~~~~~D~i~~~~~l~~----~~~~-------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                             ++.++||+|++...++.    ..+.       ..+++++.++|+|||.+++..+..
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence                   23468999999664443    2222       378999999999999999987643

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.48  E-value=3.1e-14  Score=110.13  Aligned_cols=113  Identities=19%  Similarity=0.154  Sum_probs=79.7

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEE--ecccccCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV--RADISRLPF  128 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~--~~d~~~~~~  128 (235)
                      ..+.+.....++.+|||+|||+|.++..++++   .+|+|+|+++ ++..+++....... ...++.+.  ++|+..++ 
T Consensus        72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~-~~~~v~~~~~~~D~~~l~-  145 (276)
T 2wa2_A           72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVET-FGWNLITFKSKVDVTKME-  145 (276)
T ss_dssp             HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCC-TTGGGEEEECSCCGGGCC-
T ss_pred             HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhh-cCCCeEEEeccCcHhhCC-
Confidence            44444433446789999999999999999987   4899999998 54333221100000 01167888  89998865 


Q ss_pred             CCCceeEEEecccccccCCh----H---HHHHHHHHhccCCc--EEEEEEec
Q 026688          129 ASSSIDAVHAGAAIHCWSSP----S---TGVAEISRVLRPGG--VFVGTTYI  171 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~----~---~~l~~~~~~L~pgG--~li~~~~~  171 (235)
                       .++||+|+|..+ ++..++    .   .+++.+.++|+|||  .+++..+.
T Consensus       146 -~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          146 -PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             -CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence             578999999877 444332    1   37899999999999  99987665

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.48  E-value=4.8e-13  Score=109.07  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=86.6

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCC-CeeEEecccccCCC----CCCceeE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRLPF----ASSSIDA  135 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~d~~~~~~----~~~~~D~  135 (235)
                      ++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.|++++..++.  .. +++++++|+.+...    ...+||+
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl--~~~~v~~~~~D~~~~~~~~~~~~~~fD~  296 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKL--DLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC--CGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CccceEEEECCHHHHHHHHHhcCCCCCE
Confidence            47899999999999999999975 35899999999999999999987652  03 78999999976421    1468999


Q ss_pred             EEecccc---------cccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          136 VHAGAAI---------HCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       136 i~~~~~l---------~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      |++.-..         ........++..+.+.|+|||.+++.....
T Consensus       297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            9986432         112334578999999999999999987654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.47  E-value=5.3e-13  Score=108.83  Aligned_cols=109  Identities=14%  Similarity=0.115  Sum_probs=87.1

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC----CCCceeEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAV  136 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~i  136 (235)
                      ++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.|++++..++.  ..++++.++|+.+...    ...+||+|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V  293 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGV--EDRMKFIVGSAFEEMEKLQKKGEKFDIV  293 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC--CccceEEECCHHHHHHHHHhhCCCCCEE
Confidence            47899999999999999999874 34899999999999999999987653  2379999999876421    24689999


Q ss_pred             Eecccccc---------cCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          137 HAGAAIHC---------WSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       137 ~~~~~l~~---------~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ++......         ..+...++..+.++|+|||.+++.+.+.
T Consensus       294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            98643321         1234578899999999999999988764

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.47  E-value=3.6e-14  Score=109.20  Aligned_cols=113  Identities=19%  Similarity=0.159  Sum_probs=79.8

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh-cCCCCCCCeeEE--ecccccC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-ESNFPKENFLLV--RADISRL  126 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~--~~d~~~~  126 (235)
                      +..+.+.....++.+|||+|||+|.++..+++.   .+|+|+|+++ ++..+++.... ...  ..++.+.  ++|+.++
T Consensus        63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~--~~~v~~~~~~~D~~~l  136 (265)
T 2oxt_A           63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESY--GWNIVKFKSRVDIHTL  136 (265)
T ss_dssp             HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBT--TGGGEEEECSCCTTTS
T ss_pred             HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhcc--CCCeEEEecccCHhHC
Confidence            344444433456789999999999999999887   4899999998 53322211000 000  1167888  8999886


Q ss_pred             CCCCCceeEEEecccccccCCh----H---HHHHHHHHhccCCc--EEEEEEec
Q 026688          127 PFASSSIDAVHAGAAIHCWSSP----S---TGVAEISRVLRPGG--VFVGTTYI  171 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~----~---~~l~~~~~~L~pgG--~li~~~~~  171 (235)
                      +  .++||+|+|..+ ++..++    .   .+++.+.++|+|||  .+++..+.
T Consensus       137 ~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          137 P--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             C--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             C--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            5  578999999877 544443    1   37899999999999  99987765

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.47  E-value=2.4e-13  Score=110.27  Aligned_cols=107  Identities=20%  Similarity=0.187  Sum_probs=85.8

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC----CCCceeEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAV  136 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~i  136 (235)
                      ++.+|||+|||+|.++..+++.  ..+|+++|+++.+++.|++++..++.   .+++++++|+.+...    ...+||+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~---~~~~~~~~d~~~~~~~~~~~~~~fD~I  283 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFDLV  283 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC---CCceEEECCHHHHHHHHHhcCCCeeEE
Confidence            4789999999999999999987  35899999999999999999987763   358999999976421    14689999


Q ss_pred             Eeccccccc---------CChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          137 HAGAAIHCW---------SSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       137 ~~~~~l~~~---------~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ++.-.....         .....++..+.++|+|||.+++.+...
T Consensus       284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            985432211         223478899999999999999987654

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.47  E-value=1.2e-13  Score=105.18  Aligned_cols=86  Identities=16%  Similarity=0.301  Sum_probs=71.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..+++++.  +|+++|+|+.+++.+++++..     ..++++.++|+.+
T Consensus        15 d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~   87 (244)
T 1qam_A           15 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQ   87 (244)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGG
T ss_pred             CHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHh
Confidence            567778888888877789999999999999999999874  999999999999999998753     3479999999998


Q ss_pred             CCCCC-CceeEEEec
Q 026688          126 LPFAS-SSIDAVHAG  139 (235)
Q Consensus       126 ~~~~~-~~~D~i~~~  139 (235)
                      .+++. ..| .|+++
T Consensus        88 ~~~~~~~~~-~vv~n  101 (244)
T 1qam_A           88 FKFPKNQSY-KIFGN  101 (244)
T ss_dssp             CCCCSSCCC-EEEEE
T ss_pred             CCcccCCCe-EEEEe
Confidence            87653 355 44443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.47  E-value=1.3e-12  Score=104.09  Aligned_cols=107  Identities=14%  Similarity=0.154  Sum_probs=86.9

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      .+...+.  ++.+|||+|||+|.++.. ++.  ..+|+++|+|+.+++.+++++..++.  ..++++.++|+.+..   +
T Consensus       188 ~i~~~~~--~~~~VLDlg~G~G~~~l~-a~~--~~~V~~vD~s~~ai~~a~~n~~~n~l--~~~v~~~~~D~~~~~---~  257 (336)
T 2yx1_A          188 RIMKKVS--LNDVVVDMFAGVGPFSIA-CKN--AKKIYAIDINPHAIELLKKNIKLNKL--EHKIIPILSDVREVD---V  257 (336)
T ss_dssp             HHHHHCC--TTCEEEETTCTTSHHHHH-TTT--SSEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCGGGCC---C
T ss_pred             HHHHhcC--CCCEEEEccCccCHHHHh-ccC--CCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECChHHhc---C
Confidence            3444443  478999999999999999 773  46999999999999999999988764  347999999998764   7


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .||+|++.....    ...+++.+.++|+|||.+++.+...
T Consensus       258 ~fD~Vi~dpP~~----~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          258 KGNRVIMNLPKF----AHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             CEEEEEECCTTT----GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             CCcEEEECCcHh----HHHHHHHHHHHcCCCCEEEEEEeec
Confidence            899999853211    2378999999999999999988764

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.46  E-value=2.8e-12  Score=105.63  Aligned_cols=113  Identities=17%  Similarity=0.222  Sum_probs=85.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--  125 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--  125 (235)
                      .+.+.+.+.+...++.+|||+|||+|.++..+++..  .+|+|+|+|+.+++.|++++..++.   .++++.++|+.+  
T Consensus       273 ~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~---~~v~f~~~d~~~~l  347 (433)
T 1uwv_A          273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGL---QNVTFYHENLEEDV  347 (433)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCTTSCC
T ss_pred             HHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEECCHHHHh
Confidence            355666677776667899999999999999999884  4999999999999999999887653   479999999977  


Q ss_pred             --CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          126 --LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       126 --~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                        .+++.++||+|+++-...-.   ..+++.+.+ ++|++.++++.
T Consensus       348 ~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc  389 (433)
T 1uwv_A          348 TKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSC  389 (433)
T ss_dssp             SSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEES
T ss_pred             hhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEEC
Confidence              23445689999975332211   245555544 68888777643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.44  E-value=5.3e-13  Score=115.74  Aligned_cols=108  Identities=15%  Similarity=0.149  Sum_probs=87.0

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEEEecc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAGA  140 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~~  140 (235)
                      +.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.+++++..++.. ..+++++++|+.+. +...++||+|++.-
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~-~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLT-GRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCC-STTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             CCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            78999999999999999998764 46999999999999999999887642 14799999999773 33457899999864


Q ss_pred             cc-----------cccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          141 AI-----------HCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       141 ~l-----------~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ..           ....+...+++.+.++|+|||.|+++...
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            32           22233457899999999999999987654

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.43  E-value=8.3e-13  Score=109.20  Aligned_cols=129  Identities=14%  Similarity=0.118  Sum_probs=101.4

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-------------CCceEEEEeCCHHHHHHHHHHhhh
Q 026688           41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-------------LFSLVVALDYSENMLKQCYEFVQQ  107 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-------------~~~~v~~~D~s~~~~~~a~~~~~~  107 (235)
                      +.+..+....+.+.+.+.+.++.+|||+|||+|.++..+++..             ....++|+|+++.+++.|+.++..
T Consensus       151 G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l  230 (445)
T 2okc_A          151 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  230 (445)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             CcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH
Confidence            3455678888899998887778899999999999999887642             235899999999999999998876


Q ss_pred             cCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCCh-----------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          108 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP-----------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       108 ~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~-----------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+.. ..++++.++|....+.. .+||+|+++-.+.+....                 ..++.++.+.|+|||++.++.+
T Consensus       231 ~g~~-~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          231 HGIG-TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             TTCC-SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hCCC-cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            6531 11578899998776543 489999998665543211                 3789999999999999999887


Q ss_pred             c
Q 026688          171 I  171 (235)
Q Consensus       171 ~  171 (235)
                      .
T Consensus       309 ~  309 (445)
T 2okc_A          309 D  309 (445)
T ss_dssp             H
T ss_pred             C
Confidence            5

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.43  E-value=2.2e-12  Score=106.03  Aligned_cols=119  Identities=18%  Similarity=0.259  Sum_probs=91.7

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEE
Q 026688           41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  119 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~  119 (235)
                      +.+..+....+.+.+.+...++.+|||+|||+|.++..++++. +...++|+|+++.+++.|            .++++.
T Consensus        19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~   86 (421)
T 2ih2_A           19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGI   86 (421)
T ss_dssp             --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEE
T ss_pred             ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEE
Confidence            4455578888999998876557799999999999999998864 456999999999888665            268899


Q ss_pred             ecccccCCCCCCceeEEEecccccc----------cCCh-------------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          120 RADISRLPFASSSIDAVHAGAAIHC----------WSSP-------------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       120 ~~d~~~~~~~~~~~D~i~~~~~l~~----------~~~~-------------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ++|+.... +.++||+|+++-.+..          +.+.                   ..+++.+.++|+|||.+++..+
T Consensus        87 ~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p  165 (421)
T 2ih2_A           87 LADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  165 (421)
T ss_dssp             ESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCChhhcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            99998764 3478999999633221          1111                   1568899999999999999887


Q ss_pred             cc
Q 026688          171 IV  172 (235)
Q Consensus       171 ~~  172 (235)
                      ..
T Consensus       166 ~~  167 (421)
T 2ih2_A          166 AT  167 (421)
T ss_dssp             GG
T ss_pred             hH
Confidence            63

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.41  E-value=1.3e-12  Score=102.42  Aligned_cols=91  Identities=14%  Similarity=0.188  Sum_probs=72.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.+++++...+   ..++++.++|+.+
T Consensus        27 ~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~~---~~~v~~~~~D~~~  101 (299)
T 2h1r_A           27 NPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYEG---YNNLEVYEGDAIK  101 (299)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHTT---CCCEEC----CCS
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC---CCceEEEECchhh
Confidence            456778888888877789999999999999999998754  99999999999999999886543   3479999999988


Q ss_pred             CCCCCCceeEEEeccccc
Q 026688          126 LPFASSSIDAVHAGAAIH  143 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~  143 (235)
                      .++  .+||+|+++...+
T Consensus       102 ~~~--~~~D~Vv~n~py~  117 (299)
T 2h1r_A          102 TVF--PKFDVCTANIPYK  117 (299)
T ss_dssp             SCC--CCCSEEEEECCGG
T ss_pred             CCc--ccCCEEEEcCCcc
Confidence            764  4899999875544

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.41  E-value=2.2e-12  Score=100.39  Aligned_cols=91  Identities=10%  Similarity=0.146  Sum_probs=79.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+++|+|+.+++.+++++..     ..+++++++|+.+
T Consensus        35 d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD~l~  107 (295)
T 3gru_A           35 DKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGDALK  107 (295)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHH-----CSSEEEEESCTTT
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhcc-----CCCeEEEECchhh
Confidence            567788899988888889999999999999999999854  999999999999999998863     4589999999998


Q ss_pred             CCCCCCceeEEEeccccc
Q 026688          126 LPFASSSIDAVHAGAAIH  143 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~  143 (235)
                      .+++...||.|+++..++
T Consensus       108 ~~~~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A          108 VDLNKLDFNKVVANLPYQ  125 (295)
T ss_dssp             SCGGGSCCSEEEEECCGG
T ss_pred             CCcccCCccEEEEeCccc
Confidence            887777899999875543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.40  E-value=2.1e-12  Score=100.13  Aligned_cols=117  Identities=15%  Similarity=0.012  Sum_probs=84.1

Q ss_pred             CCCCCCeEEEecCCC------chHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeE-EecccccCCCC
Q 026688           58 KPVLGGNIIDASCGS------GLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLL-VRADISRLPFA  129 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~------G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~d~~~~~~~  129 (235)
                      ...++.+|||+|||+      |.  ..+++..+ ..+|+|+|+++.        +        .++++ +++|+.+.+++
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v--------~~v~~~i~gD~~~~~~~  121 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V--------SDADSTLIGDCATVHTA  121 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B--------CSSSEEEESCGGGCCCS
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C--------CCCEEEEECccccCCcc
Confidence            455678999999955      65  44454443 579999999997        1        15778 99999887654


Q ss_pred             CCceeEEEecccccc-----cCC------hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceee
Q 026688          130 SSSIDAVHAGAAIHC-----WSS------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF  198 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~-----~~~------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (235)
                       ++||+|+++...+.     .+.      ...+++++.++|+|||.+++..+...                         
T Consensus       122 -~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-------------------------  175 (290)
T 2xyq_A          122 -NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-------------------------  175 (290)
T ss_dssp             -SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-------------------------
T ss_pred             -CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-------------------------
Confidence             68999999743221     111      13789999999999999999765431                         


Q ss_pred             cCHHHHHHHHHHcCCceeEEE
Q 026688          199 LSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                       ...++.+++++.||..+...
T Consensus       176 -~~~~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          176 -WNADLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             -CCHHHHHHHTTEEEEEEEEE
T ss_pred             -CHHHHHHHHHHcCCcEEEEE
Confidence             22467788888888776664

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.39  E-value=5.8e-12  Score=102.16  Aligned_cols=129  Identities=12%  Similarity=0.020  Sum_probs=97.6

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC-----------------------------------
Q 026688           41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-----------------------------------   85 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----------------------------------   85 (235)
                      ...|..+.+...++......++..|||++||+|.+++.++....+                                   
T Consensus       181 ~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~  260 (393)
T 3k0b_A          181 GSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANY  260 (393)
T ss_dssp             CSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred             CCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcc
Confidence            344566778888888888777899999999999999888765432                                   


Q ss_pred             ---ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccc-cC---ChHHHHHHHHHh
Q 026688           86 ---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC-WS---SPSTGVAEISRV  158 (235)
Q Consensus        86 ---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~-~~---~~~~~l~~~~~~  158 (235)
                         ..|+|+|+++.+++.|++++...+.  ..++++.+.|+.+.+.+ .+||+|+++-.+.. +.   +...+.+.+.+.
T Consensus       261 ~~~~~V~GvDid~~al~~Ar~Na~~~gl--~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~  337 (393)
T 3k0b_A          261 DQPLNIIGGDIDARLIEIAKQNAVEAGL--GDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIV  337 (393)
T ss_dssp             TCCCCEEEEESCHHHHHHHHHHHHHTTC--TTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHH
Confidence               4699999999999999999988765  34699999999987654 58999999844321 21   223455556666


Q ss_pred             ccC--CcEEEEEEecc
Q 026688          159 LRP--GGVFVGTTYIV  172 (235)
Q Consensus       159 L~p--gG~li~~~~~~  172 (235)
                      |++  ||.+++.+...
T Consensus       338 lk~~~g~~~~iit~~~  353 (393)
T 3k0b_A          338 YKRMPTWSVYVLTSYE  353 (393)
T ss_dssp             HHTCTTCEEEEEECCT
T ss_pred             HhcCCCCEEEEEECCH
Confidence            665  88888876643

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.38  E-value=5.6e-12  Score=102.06  Aligned_cols=128  Identities=15%  Similarity=0.057  Sum_probs=98.0

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC-----------------------------------
Q 026688           41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-----------------------------------   85 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----------------------------------   85 (235)
                      ...|..+.+...++......++.+|||++||+|.+++.++..+.+                                   
T Consensus       175 ~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~  254 (385)
T 3ldu_A          175 NKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDN  254 (385)
T ss_dssp             -CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhc
Confidence            344556778888888888778899999999999999988775322                                   


Q ss_pred             ---ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccc-cC---ChHHHHHHHHHh
Q 026688           86 ---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC-WS---SPSTGVAEISRV  158 (235)
Q Consensus        86 ---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~-~~---~~~~~l~~~~~~  158 (235)
                         ..|+|+|+++.+++.|++++...+.  ..++++.+.|+.+.+.+ .+||+|+++-.+.. +.   +...+.+.+.+.
T Consensus       255 ~~~~~V~GvDid~~ai~~Ar~Na~~~gl--~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~  331 (385)
T 3ldu_A          255 ESKFKIYGYDIDEESIDIARENAEIAGV--DEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYA  331 (385)
T ss_dssp             SCCCCEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHH
Confidence               4799999999999999999987764  34799999999987654 68999999765432 21   224566667677


Q ss_pred             ccC--CcEEEEEEec
Q 026688          159 LRP--GGVFVGTTYI  171 (235)
Q Consensus       159 L~p--gG~li~~~~~  171 (235)
                      |++  |+.+.+.+..
T Consensus       332 lk~~~g~~~~iit~~  346 (385)
T 3ldu_A          332 FRKLKNWSYYLITSY  346 (385)
T ss_dssp             HHTSBSCEEEEEESC
T ss_pred             HhhCCCCEEEEEECC
Confidence            776  8888877654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.37  E-value=5.5e-15  Score=112.86  Aligned_cols=116  Identities=13%  Similarity=0.151  Sum_probs=88.5

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.+++++..     ..++++.++|+.+
T Consensus        14 ~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~   86 (245)
T 1yub_A           14 SEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQ   86 (245)
T ss_dssp             CTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTT
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhh
Confidence            44566788888887778899999999999999999986  4999999999999988876542     3579999999998


Q ss_pred             CCCCC-CceeEEEeccc-----------ccccCChHHHH----HHHHHhccCCcEEEEEE
Q 026688          126 LPFAS-SSIDAVHAGAA-----------IHCWSSPSTGV----AEISRVLRPGGVFVGTT  169 (235)
Q Consensus       126 ~~~~~-~~~D~i~~~~~-----------l~~~~~~~~~l----~~~~~~L~pgG~li~~~  169 (235)
                      .+++. ++| .|+++..           +.|.......+    +.+.++|+|||.+.+..
T Consensus        87 ~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           87 FQFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             TTCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             cCcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            87653 578 6666522           22333344445    67999999999876533

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.37  E-value=1.3e-11  Score=99.71  Aligned_cols=127  Identities=13%  Similarity=0.074  Sum_probs=97.8

Q ss_pred             CCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC------------------------------------
Q 026688           42 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF------------------------------------   85 (235)
Q Consensus        42 ~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------------------------------------   85 (235)
                      ..|..+.+...++......++..+||.+||+|.+++..+....+                                    
T Consensus       175 ~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~  254 (384)
T 3ldg_A          175 GAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYD  254 (384)
T ss_dssp             -CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhcc
Confidence            34556778888888888778899999999999999888765332                                    


Q ss_pred             --ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccc-cCC---hHHHHHHHHHhc
Q 026688           86 --SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC-WSS---PSTGVAEISRVL  159 (235)
Q Consensus        86 --~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~-~~~---~~~~l~~~~~~L  159 (235)
                        ..++|+|+++.+++.|++++...+.  ...+++.+.|+.+.+.+ ..||+|+++--+.. +.+   ...+.+.+.+.|
T Consensus       255 ~~~~v~GvDid~~al~~Ar~Na~~~gl--~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~l  331 (384)
T 3ldg_A          255 IQLDISGFDFDGRMVEIARKNAREVGL--EDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETF  331 (384)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHH
Confidence              4699999999999999999988765  34699999999987754 58999999854421 222   245666666677


Q ss_pred             cC--CcEEEEEEec
Q 026688          160 RP--GGVFVGTTYI  171 (235)
Q Consensus       160 ~p--gG~li~~~~~  171 (235)
                      ++  ||.+.+.+..
T Consensus       332 k~~~g~~~~iit~~  345 (384)
T 3ldg_A          332 APLKTWSQFILTND  345 (384)
T ss_dssp             TTCTTSEEEEEESC
T ss_pred             hhCCCcEEEEEECC
Confidence            66  8888887764

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.36  E-value=3.6e-13  Score=105.71  Aligned_cols=104  Identities=13%  Similarity=0.068  Sum_probs=73.4

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeC----CHHHHHHHHHHhhhcCCCCCCCeeEEec-ccccCCCCCCce
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY----SENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSI  133 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~----s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~  133 (235)
                      ..++.+|||+|||+|.++..++++   .+|+++|+    ++.+++...  ....+   ..++.+.++ |+..++  .++|
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~~~---~~~v~~~~~~D~~~l~--~~~f  149 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MSTYG---WNLVRLQSGVDVFFIP--PERC  149 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCSTT---GGGEEEECSCCTTTSC--CCCC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhhcC---CCCeEEEeccccccCC--cCCC
Confidence            345789999999999999999987   38999999    554332110  01000   246888888 887764  4689


Q ss_pred             eEEEeccccc---ccCChH---HHHHHHHHhccCCcEEEEEEecc
Q 026688          134 DAVHAGAAIH---CWSSPS---TGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       134 D~i~~~~~l~---~~~~~~---~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      |+|+|...+.   +..+..   .++..+.++|+|||.+++..+..
T Consensus       150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            9999976653   222222   47888999999999999866543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.34  E-value=2.3e-11  Score=99.60  Aligned_cols=99  Identities=20%  Similarity=0.219  Sum_probs=77.3

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|++++..++.   . +++.++|+.+...  .+||+|++.
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~ngl---~-v~~~~~d~~~~~~--~~fD~Vv~d  360 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEINNV---D-AEFEVASDREVSV--KGFDTVIVD  360 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC---C-EEEEECCTTTCCC--TTCSEEEEC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC---c-EEEEECChHHcCc--cCCCEEEEc
Confidence            3478999999999999999998754  999999999999999999887653   3 8999999988642  389999985


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ......  ...+++.+. .|+|+|.++++.
T Consensus       361 PPr~g~--~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          361 PPRAGL--HPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             CCTTCS--CHHHHHHHH-HHCCSEEEEEES
T ss_pred             CCccch--HHHHHHHHH-hcCCCcEEEEEC
Confidence            432111  124555554 589999988864

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.31  E-value=1.5e-10  Score=89.40  Aligned_cols=111  Identities=16%  Similarity=0.281  Sum_probs=86.9

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--CCCCCCCeeEEecccccC-CCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISRL-PFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~  137 (235)
                      .+++||-||.|.|..+..+++..+..+++.+|+++.+++.+++.+...  +....++++++..|.... .-..++||+|+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi  162 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII  162 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence            368999999999999999999877779999999999999999987542  222257899999999764 33457899999


Q ss_pred             ecccccccCC----hHHHHHHHHHhccCCcEEEEEEec
Q 026688          138 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       138 ~~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ....-..-+.    ...+++.+++.|+|||.++.....
T Consensus       163 ~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s  200 (294)
T 3o4f_A          163 SDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV  200 (294)
T ss_dssp             ESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence            7543221111    147899999999999999986544

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.29  E-value=2e-11  Score=93.32  Aligned_cols=87  Identities=10%  Similarity=0.184  Sum_probs=72.7

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+++|+|+.+++.+++++..     ..+++++++|+.+
T Consensus        14 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~   86 (255)
T 3tqs_A           14 DSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQ   86 (255)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTT
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHh
Confidence            456778888888888889999999999999999999864  999999999999999998764     3479999999998


Q ss_pred             CCCCC----CceeEEEecc
Q 026688          126 LPFAS----SSIDAVHAGA  140 (235)
Q Consensus       126 ~~~~~----~~~D~i~~~~  140 (235)
                      .+++.    +.|| |+++.
T Consensus        87 ~~~~~~~~~~~~~-vv~Nl  104 (255)
T 3tqs_A           87 FDFSSVKTDKPLR-VVGNL  104 (255)
T ss_dssp             CCGGGSCCSSCEE-EEEEC
T ss_pred             CCHHHhccCCCeE-EEecC
Confidence            76542    4688 55543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.27  E-value=2.9e-11  Score=97.57  Aligned_cols=114  Identities=13%  Similarity=0.153  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ..+.+.+.+.+... +.+|||+|||+|.++..+++...  +|+++|+++.+++.|++++..++.   .+++++++|+.+.
T Consensus       200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~ng~---~~v~~~~~d~~~~  273 (369)
T 3bt7_A          200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAANHI---DNVQIIRMAAEEF  273 (369)
T ss_dssp             HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHTTC---CSEEEECCCSHHH
T ss_pred             HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC---CceEEEECCHHHH
Confidence            34455666666543 57899999999999999988654  999999999999999999987653   4799999998764


Q ss_pred             C--CCC--------------CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          127 P--FAS--------------SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       127 ~--~~~--------------~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .  +..              ..||+|++.-.-      ..+..++.+.|+++|.+++...+.
T Consensus       274 ~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvsc~p  329 (369)
T 3bt7_A          274 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYISCNP  329 (369)
T ss_dssp             HHHHSSCCCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEESCH
T ss_pred             HHHHhhccccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEECCH
Confidence            1  111              379999963211      123456777778999998887653

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.27  E-value=2.6e-11  Score=102.28  Aligned_cols=132  Identities=11%  Similarity=0.010  Sum_probs=99.2

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC------------------CceEEEEeCCHHHHHHHH
Q 026688           41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL------------------FSLVVALDYSENMLKQCY  102 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------------~~~v~~~D~s~~~~~~a~  102 (235)
                      +.+..+....+.+.+.+.+.++.+|||.+||+|.++..+++...                  ...++|+|+++.+++.|+
T Consensus       149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~  228 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  228 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence            44666788888888888877788999999999999988776421                  237999999999999999


Q ss_pred             HHhhhcCCCCC--CCeeEEecccccCC-CCCCceeEEEecccccccCC--------------hHHHHHHHHHhccCCcEE
Q 026688          103 EFVQQESNFPK--ENFLLVRADISRLP-FASSSIDAVHAGAAIHCWSS--------------PSTGVAEISRVLRPGGVF  165 (235)
Q Consensus       103 ~~~~~~~~~~~--~~~~~~~~d~~~~~-~~~~~~D~i~~~~~l~~~~~--------------~~~~l~~~~~~L~pgG~l  165 (235)
                      .++...+....  .++.+.++|....+ .....||+|+++-.+.....              ...++.++.+.|+|||++
T Consensus       229 ~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~  308 (541)
T 2ar0_A          229 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA  308 (541)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEE
Confidence            98876553100  02778899986543 33568999999865543221              137899999999999999


Q ss_pred             EEEEecc
Q 026688          166 VGTTYIV  172 (235)
Q Consensus       166 i~~~~~~  172 (235)
                      .++.+..
T Consensus       309 a~V~p~~  315 (541)
T 2ar0_A          309 AVVVPDN  315 (541)
T ss_dssp             EEEEEHH
T ss_pred             EEEecCc
Confidence            9988753

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.27  E-value=3.8e-10  Score=90.43  Aligned_cols=159  Identities=11%  Similarity=0.035  Sum_probs=101.0

Q ss_pred             CCeEEEecCCCchHHHHHHH--------c-------CCCceEEEEeCCHHHHHHHHHHhhhcCC--------C-CCCCee
Q 026688           62 GGNIIDASCGSGLFSRIFAK--------S-------GLFSLVVALDYSENMLKQCYEFVQQESN--------F-PKENFL  117 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~--------~-------~~~~~v~~~D~s~~~~~~a~~~~~~~~~--------~-~~~~~~  117 (235)
                      +.+|+|+|||+|.++..+..        +       .|..+|...|+-.......=+.+.....        . ...+..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            57899999999999887722        2       2567899999866554444333332100        0 000111


Q ss_pred             E---EecccccCCCCCCceeEEEecccccccCChH--------------------------------------HHHHHHH
Q 026688          118 L---VRADISRLPFASSSIDAVHAGAAIHCWSSPS--------------------------------------TGVAEIS  156 (235)
Q Consensus       118 ~---~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~--------------------------------------~~l~~~~  156 (235)
                      |   +.+.+..-.+|.+++|+|+++.++|++.+..                                      .+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   2333333457789999999999999987322                                      3578889


Q ss_pred             HhccCCcEEEEEEeccCCCcccc-----hhH-HHHHHhHh--------------hcCCceeecCHHHHHHHHH-HcCCce
Q 026688          157 RVLRPGGVFVGTTYIVDGPFNLI-----PFS-RLLRQNMM--------------QISGSYTFLSEREIEDLCR-ACGLVD  215 (235)
Q Consensus       157 ~~L~pgG~li~~~~~~~~~~~~~-----~~~-~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~-~~Gf~~  215 (235)
                      +.|+|||.++++.....+.....     ... ..+...+.              ...-...+.+.++++.+++ +.||++
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I  292 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI  292 (374)
T ss_dssp             HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence            99999999999999876532221     000 11211111              1223456789999999998 589988


Q ss_pred             eEEEe
Q 026688          216 FKCTR  220 (235)
Q Consensus       216 ~~~~~  220 (235)
                      .....
T Consensus       293 ~~le~  297 (374)
T 3b5i_A          293 DKLVV  297 (374)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.27  E-value=1.4e-10  Score=91.00  Aligned_cols=118  Identities=14%  Similarity=0.064  Sum_probs=87.2

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      .+...+...++.+|||+|||+|..+..+++. .+..+|+++|+++.+++.+++++...+   ..++.+...|+.+.+...
T Consensus        93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g---~~~v~~~~~D~~~~~~~~  169 (309)
T 2b9e_A           93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSD  169 (309)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTC
T ss_pred             HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCChHhcCccc
Confidence            4445566677899999999999999999886 345699999999999999999998765   347999999998764321


Q ss_pred             ---CceeEEEecc------cccccC-----------Ch-------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          131 ---SSIDAVHAGA------AIHCWS-----------SP-------STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       131 ---~~~D~i~~~~------~l~~~~-----------~~-------~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                         .+||.|++.-      ++..-+           +.       .++|+.+.++++ ||.|+.++.+..
T Consensus       170 ~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~  238 (309)
T 2b9e_A          170 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC  238 (309)
T ss_dssp             GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred             cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence               5799999741      221111           11       146777777776 999998887653

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.26  E-value=3.5e-11  Score=92.62  Aligned_cols=89  Identities=18%  Similarity=0.220  Sum_probs=74.9

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++ +|||||||+|.++..+++.+.  +|+++|+|+.+++.+++++.      ..+++++++|+.+
T Consensus        32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~------~~~v~vi~~D~l~  102 (271)
T 3fut_A           32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLS------GLPVRLVFQDALL  102 (271)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTT------TSSEEEEESCGGG
T ss_pred             CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcC------CCCEEEEECChhh
Confidence            46778888888888778 999999999999999999874  99999999999999999875      2479999999998


Q ss_pred             CCCCC-CceeEEEeccccc
Q 026688          126 LPFAS-SSIDAVHAGAAIH  143 (235)
Q Consensus       126 ~~~~~-~~~D~i~~~~~l~  143 (235)
                      .+++. ..+|.|+++...+
T Consensus       103 ~~~~~~~~~~~iv~NlPy~  121 (271)
T 3fut_A          103 YPWEEVPQGSLLVANLPYH  121 (271)
T ss_dssp             SCGGGSCTTEEEEEEECSS
T ss_pred             CChhhccCccEEEecCccc
Confidence            87653 2688888775443

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.25  E-value=2.4e-11  Score=94.94  Aligned_cols=90  Identities=17%  Similarity=0.207  Sum_probs=74.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ..+.+.+.+.+...++.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.|++++...+    .+++++++|+.++
T Consensus        12 pvLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g----~~v~~v~~d~~~l   87 (301)
T 1m6y_A           12 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREA   87 (301)
T ss_dssp             CTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCHHHH
Confidence            345667777777777899999999999999999998766799999999999999999987653    4799999999876


Q ss_pred             C--CC---CCceeEEEecc
Q 026688          127 P--FA---SSSIDAVHAGA  140 (235)
Q Consensus       127 ~--~~---~~~~D~i~~~~  140 (235)
                      +  +.   ..+||.|++..
T Consensus        88 ~~~l~~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           88 DFLLKTLGIEKVDGILMDL  106 (301)
T ss_dssp             HHHHHHTTCSCEEEEEEEC
T ss_pred             HHHHHhcCCCCCCEEEEcC
Confidence            4  11   15799999754

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.18  E-value=1e-10  Score=94.45  Aligned_cols=103  Identities=15%  Similarity=0.133  Sum_probs=83.0

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEecccccCC--CCCCceeEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISRLP--FASSSIDAV  136 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~~~--~~~~~~D~i  136 (235)
                      ++.+|||++||+|.++..++.+... .+|+++|+++..++.+++++..++.  ..+ +++.++|+.+.-  ...+.||+|
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl--~~~~v~v~~~Da~~~l~~~~~~~fD~V  129 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI--PEDRYEIHGMEANFFLRKEWGFGFDYV  129 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC--CGGGEEEECSCHHHHHHSCCSSCEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCceEEEEeCCHHHHHHHhhCCCCcEE
Confidence            4689999999999999999986433 5899999999999999999998764  234 899999986531  124579999


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ++.-    ...+..+++.+.+.|+|||.|+++.
T Consensus       130 ~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          130 DLDP----FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            9865    2234578999999999999887766

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.18  E-value=6.2e-10  Score=89.25  Aligned_cols=154  Identities=13%  Similarity=0.024  Sum_probs=99.1

Q ss_pred             CCeEEEecCCCchHHHHHHHc-----------------CCCceEEEEeCC-----------HHHHHHHHHHhhhcCCCCC
Q 026688           62 GGNIIDASCGSGLFSRIFAKS-----------------GLFSLVVALDYS-----------ENMLKQCYEFVQQESNFPK  113 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~-----------------~~~~~v~~~D~s-----------~~~~~~a~~~~~~~~~~~~  113 (235)
                      ..+|+|+||++|.++..+...                 .|..+|+..|+-           +.+.+.+++..   +.  .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~---g~--~  127 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN---GR--K  127 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT---CC--C
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc---cC--C
Confidence            578999999999998877654                 356788899986           33333332221   10  1


Q ss_pred             CCeeEEeccc---ccCCCCCCceeEEEecccccccCChHH---------------------------------------H
Q 026688          114 ENFLLVRADI---SRLPFASSSIDAVHAGAAIHCWSSPST---------------------------------------G  151 (235)
Q Consensus       114 ~~~~~~~~d~---~~~~~~~~~~D~i~~~~~l~~~~~~~~---------------------------------------~  151 (235)
                      .+..|+.+.-   ..-.+|.+++|+|+++.++|++.+...                                       +
T Consensus       128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F  207 (384)
T 2efj_A          128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF  207 (384)
T ss_dssp             TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            1234444433   334578899999999999999865421                                       2


Q ss_pred             HHHHHHhccCCcEEEEEEeccCCC--cccc-hhHHHHHHh-----------HhhcCCceeecCHHHHHHHHHHcC-Ccee
Q 026688          152 VAEISRVLRPGGVFVGTTYIVDGP--FNLI-PFSRLLRQN-----------MMQISGSYTFLSEREIEDLCRACG-LVDF  216 (235)
Q Consensus       152 l~~~~~~L~pgG~li~~~~~~~~~--~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~G-f~~~  216 (235)
                      |+.-.+.|+|||.+++........  .... ......+..           +.....+..+.+.++++.++++.| |++.
T Consensus       208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~  287 (384)
T 2efj_A          208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEIL  287 (384)
T ss_dssp             HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEE
Confidence            555689999999999999887653  2110 012222211           112333567789999999999985 7776


Q ss_pred             EEEe
Q 026688          217 KCTR  220 (235)
Q Consensus       217 ~~~~  220 (235)
                      ....
T Consensus       288 ~le~  291 (384)
T 2efj_A          288 YLET  291 (384)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6553

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.16  E-value=1.2e-10  Score=93.99  Aligned_cols=102  Identities=18%  Similarity=0.121  Sum_probs=82.0

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc---------------CCCCCCCeeEEeccccc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKENFLLVRADISR  125 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------------~~~~~~~~~~~~~d~~~  125 (235)
                      ++.+|||+|||+|..+..+++..+..+|+++|+++.+++.+++++..+               +.   .++++.+.|+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl---~~i~v~~~Da~~  123 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE---KTIVINHDDANR  123 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS---SEEEEEESCHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC---CceEEEcCcHHH
Confidence            478999999999999999999855568999999999999999999876               42   348899999876


Q ss_pred             CC-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          126 LP-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       126 ~~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .. ...+.||+|++.- .   .....+++.+.+.|+|||.++++.
T Consensus       124 ~~~~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          124 LMAERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            42 1135799999643 1   234678999999999999877765

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.15  E-value=5.3e-10  Score=97.06  Aligned_cols=130  Identities=15%  Similarity=0.017  Sum_probs=95.6

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-------------------------------------
Q 026688           41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-------------------------------------   83 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-------------------------------------   83 (235)
                      ...|..+.+...++......++..|||.+||+|.+++..+...                                     
T Consensus       170 ~~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~  249 (703)
T 3v97_A          170 GIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRAR  249 (703)
T ss_dssp             CCCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhh
Confidence            3445667888888888887778899999999999998877642                                     


Q ss_pred             -----CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC--CCceeEEEecccccc-cCC---hHHH-
Q 026688           84 -----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAAIHC-WSS---PSTG-  151 (235)
Q Consensus        84 -----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~~~~l~~-~~~---~~~~-  151 (235)
                           +...++|+|+++.+++.|+.++...+.  ...+++.+.|+.+...+  .+.||+|+++--+.. +.+   ...+ 
T Consensus       250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~agv--~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly  327 (703)
T 3v97_A          250 KGLAEYSSHFYGSDSDARVIQRARTNARLAGI--GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALH  327 (703)
T ss_dssp             HHHHHCCCCEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHH
T ss_pred             hccccCCccEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHH
Confidence                 125899999999999999999988765  34589999999886322  338999999844421 222   1233 


Q ss_pred             --HHHHHHhccCCcEEEEEEecc
Q 026688          152 --VAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       152 --l~~~~~~L~pgG~li~~~~~~  172 (235)
                        +.++.+.+.|||.+++.+...
T Consensus       328 ~~l~~~lk~~~~g~~~~ilt~~~  350 (703)
T 3v97_A          328 SLLGRIMKNQFGGWNLSLFSASP  350 (703)
T ss_dssp             HHHHHHHHHHCTTCEEEEEESCH
T ss_pred             HHHHHHHHhhCCCCeEEEEeCCH
Confidence              444555556899999877644

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.14  E-value=2.5e-10  Score=96.19  Aligned_cols=130  Identities=18%  Similarity=0.041  Sum_probs=97.5

Q ss_pred             cCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC---------------CceEEEEeCCHHHHHHHHHH
Q 026688           40 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL---------------FSLVVALDYSENMLKQCYEF  104 (235)
Q Consensus        40 ~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---------------~~~v~~~D~s~~~~~~a~~~  104 (235)
                      .+.+..+....+.+.+.+.+.++ +|||.+||+|.++..+.+...               ...++|+|+++.++..|+.+
T Consensus       224 ~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N  302 (544)
T 3khk_A          224 GGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN  302 (544)
T ss_dssp             STTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred             CCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence            35667788999999998887654 999999999999887754311               35899999999999999998


Q ss_pred             hhhcCCCCCCCeeEEecccccCC-CCCCceeEEEecccccc-------------------------cCC---h-HHHHHH
Q 026688          105 VQQESNFPKENFLLVRADISRLP-FASSSIDAVHAGAAIHC-------------------------WSS---P-STGVAE  154 (235)
Q Consensus       105 ~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i~~~~~l~~-------------------------~~~---~-~~~l~~  154 (235)
                      +...+.  ..++.+.++|....+ .+...||+|+++--+..                         .+.   . ..++.+
T Consensus       303 l~l~gi--~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~  380 (544)
T 3khk_A          303 MVIRGI--DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLH  380 (544)
T ss_dssp             HHHTTC--CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHH
T ss_pred             HHHhCC--CcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHH
Confidence            877654  223444778876543 34578999999744331                         111   1 268999


Q ss_pred             HHHhccCCcEEEEEEecc
Q 026688          155 ISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       155 ~~~~L~pgG~li~~~~~~  172 (235)
                      +.+.|+|||++.++.+..
T Consensus       381 ~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          381 MLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             HHHTEEEEEEEEEEEETH
T ss_pred             HHHHhccCceEEEEecch
Confidence            999999999999988753

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.10  E-value=1.8e-09  Score=90.77  Aligned_cols=132  Identities=17%  Similarity=0.061  Sum_probs=100.1

Q ss_pred             cCCCCCCHHHHHHHHhhcC----CCCCCeEEEecCCCchHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHhhhcCCCC
Q 026688           40 WGGFPGPEKEFELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFP  112 (235)
Q Consensus        40 ~~~~~~~~~~~~~i~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~  112 (235)
                      .+.+..|....+.+.+.+.    +.++.+|+|.+||+|.++..+++..   ....++|+|+++.+...|+.++...+.. 
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-  274 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP-  274 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC-
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC-
Confidence            3556778888888888776    4467899999999999998887763   2468999999999999999988766531 


Q ss_pred             CCCeeEEecccccC--C-CCCCceeEEEecccccc-------------------cC---Ch-HHHHHHHHHhcc-CCcEE
Q 026688          113 KENFLLVRADISRL--P-FASSSIDAVHAGAAIHC-------------------WS---SP-STGVAEISRVLR-PGGVF  165 (235)
Q Consensus       113 ~~~~~~~~~d~~~~--~-~~~~~~D~i~~~~~l~~-------------------~~---~~-~~~l~~~~~~L~-pgG~l  165 (235)
                      ..++.+.++|....  | .....||+|+++--+..                   ++   +. ..++.++.+.|+ |||++
T Consensus       275 ~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~  354 (542)
T 3lkd_A          275 IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVM  354 (542)
T ss_dssp             GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEE
T ss_pred             cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeE
Confidence            14678999998765  3 34578999998733210                   10   00 248999999999 99999


Q ss_pred             EEEEecc
Q 026688          166 VGTTYIV  172 (235)
Q Consensus       166 i~~~~~~  172 (235)
                      .++.+..
T Consensus       355 a~VlP~g  361 (542)
T 3lkd_A          355 AIVLPHG  361 (542)
T ss_dssp             EEEEETH
T ss_pred             EEEecch
Confidence            9988764

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.10  E-value=4.1e-10  Score=87.07  Aligned_cols=77  Identities=13%  Similarity=0.175  Sum_probs=65.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+..  .+|+++|+|+.+++.++++.       ..+++++++|+
T Consensus        27 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-------~~~v~~i~~D~   99 (279)
T 3uzu_A           27 DHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-------GELLELHAGDA   99 (279)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-------GGGEEEEESCG
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-------CCCcEEEECCh
Confidence            4567788888888878899999999999999999998652  33999999999999999883       13799999999


Q ss_pred             ccCCCC
Q 026688          124 SRLPFA  129 (235)
Q Consensus       124 ~~~~~~  129 (235)
                      .+.+++
T Consensus       100 ~~~~~~  105 (279)
T 3uzu_A          100 LTFDFG  105 (279)
T ss_dssp             GGCCGG
T ss_pred             hcCChh
Confidence            987654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.08  E-value=4e-11  Score=91.81  Aligned_cols=88  Identities=15%  Similarity=0.135  Sum_probs=66.6

Q ss_pred             HHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCH-------HHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           53 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE-------NMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        53 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~-------~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      +...+...++.+|||+|||+|..+..+++.+  .+|+++|+++       .+++.|+++...++.  ..+++++++|+.+
T Consensus        75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~--~~ri~~~~~d~~~  150 (258)
T 2r6z_A           75 IAKAVNHTAHPTVWDATAGLGRDSFVLASLG--LTVTAFEQHPAVACLLSDGIRRALLNPETQDT--AARINLHFGNAAE  150 (258)
T ss_dssp             HHHHTTGGGCCCEEETTCTTCHHHHHHHHTT--CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH--HTTEEEEESCHHH
T ss_pred             HHHHhCcCCcCeEEEeeCccCHHHHHHHHhC--CEEEEEECChhhhHHHHHHHHHHHhHHHhhCC--ccCeEEEECCHHH
Confidence            3444444456899999999999999999975  4999999999       999999887655432  2359999999977


Q ss_pred             C-C-CCC--CceeEEEecccccc
Q 026688          126 L-P-FAS--SSIDAVHAGAAIHC  144 (235)
Q Consensus       126 ~-~-~~~--~~~D~i~~~~~l~~  144 (235)
                      . + ++.  ++||+|++.-.+.+
T Consensus       151 ~l~~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          151 QMPALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHHHHHCCCSEEEECCCC--
T ss_pred             HHHhhhccCCCccEEEECCCCCC
Confidence            4 2 333  68999999876654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=99.07  E-value=1.6e-09  Score=86.21  Aligned_cols=156  Identities=14%  Similarity=0.071  Sum_probs=104.8

Q ss_pred             CCeEEEecCCCchHHHHHHHc----------------CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe---cc
Q 026688           62 GGNIIDASCGSGLFSRIFAKS----------------GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR---AD  122 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~----------------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~d  122 (235)
                      ..+|+|+||++|.++..+...                .|..+|+..|+-.......-+.+.....  ..+..|..   +.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~--~~~~~f~~gvpgS  129 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND--VDGVCFINGVPGS  129 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS--CTTCEEEEEEESC
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc--cCCCEEEEecchh
Confidence            578999999999887755433                4567899999988777777666543210  11223433   33


Q ss_pred             cccCCCCCCceeEEEecccccccCChH---------------------------------HHHHHHHHhccCCcEEEEEE
Q 026688          123 ISRLPFASSSIDAVHAGAAIHCWSSPS---------------------------------TGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       123 ~~~~~~~~~~~D~i~~~~~l~~~~~~~---------------------------------~~l~~~~~~L~pgG~li~~~  169 (235)
                      +..-.+|.+++|+|+++.++|++.+..                                 .+|+.-.+.|+|||.+++..
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            444457889999999999999986421                                 24888899999999999999


Q ss_pred             eccCCCcccc----hhHHHHHHhHh--------------hcCCceeecCHHHHHHHHHHcCC-ceeEEE
Q 026688          170 YIVDGPFNLI----PFSRLLRQNMM--------------QISGSYTFLSEREIEDLCRACGL-VDFKCT  219 (235)
Q Consensus       170 ~~~~~~~~~~----~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~Gf-~~~~~~  219 (235)
                      ....+.....    .+...+...|.              ...-+..+.+.++++..+++.|. ++....
T Consensus       210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e  278 (359)
T 1m6e_X          210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE  278 (359)
T ss_dssp             EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred             ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence            8776532110    11222222221              12334678889999999999965 665544

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.06  E-value=1.7e-09  Score=82.43  Aligned_cols=77  Identities=16%  Similarity=0.366  Sum_probs=65.5

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++ .      ..+++++++|+.+
T Consensus        16 d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~-~------~~~v~~i~~D~~~   87 (249)
T 3ftd_A           16 SEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI-G------DERLEVINEDASK   87 (249)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS-C------CTTEEEECSCTTT
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc-c------CCCeEEEEcchhh
Confidence            45677888888888778999999999999999999884 35999999999999999876 1      4579999999998


Q ss_pred             CCCCC
Q 026688          126 LPFAS  130 (235)
Q Consensus       126 ~~~~~  130 (235)
                      .+++.
T Consensus        88 ~~~~~   92 (249)
T 3ftd_A           88 FPFCS   92 (249)
T ss_dssp             CCGGG
T ss_pred             CChhH
Confidence            87653

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.05  E-value=1.1e-09  Score=83.54  Aligned_cols=143  Identities=13%  Similarity=0.037  Sum_probs=93.5

Q ss_pred             CCCCeEEEecCCCchHHHHHHHc-------CCC-----ceEEEEeCCH---HHHH-----------HHHHHhhhcC----
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKS-------GLF-----SLVVALDYSE---NMLK-----------QCYEFVQQES----  109 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~-------~~~-----~~v~~~D~s~---~~~~-----------~a~~~~~~~~----  109 (235)
                      .+..+|||+|+|+|..+..+.+.       .|.     ..++++|..|   +.+.           .+++.+..+.    
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            34579999999999988876553       453     5899999876   4444           4555554321    


Q ss_pred             ------C-CCCCCeeEEeccccc-CCC-CC---CceeEEEecccc-cccCC--hHHHHHHHHHhccCCcEEEEEEeccCC
Q 026688          110 ------N-FPKENFLLVRADISR-LPF-AS---SSIDAVHAGAAI-HCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDG  174 (235)
Q Consensus       110 ------~-~~~~~~~~~~~d~~~-~~~-~~---~~~D~i~~~~~l-~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~  174 (235)
                            . .+..++++..+|+.+ ++. +.   ..||+|+....- ..-++  ...+++.+.++|+|||.|+.  +..  
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysa--  214 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTS--  214 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCC--
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeC--
Confidence                  0 012457789999876 332 22   279999985321 11111  24789999999999999883  221  


Q ss_pred             CcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeC-cEEEEEEecC
Q 026688          175 PFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-GFVMFTATKP  232 (235)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-~~~~~~~~k~  232 (235)
                                                ...+++.|..+||++.+....+ ...+.++.|+
T Consensus       215 --------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~  247 (257)
T 2qy6_A          215 --------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVME  247 (257)
T ss_dssp             --------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC
T ss_pred             --------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEec
Confidence                                      1356788899999987765544 4456666654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.03  E-value=3.3e-10  Score=86.42  Aligned_cols=89  Identities=7%  Similarity=0.118  Sum_probs=67.6

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.+.+.+...++.+|||||||+|.++. +. ++...+|+++|+|+.+++.+++++..     ..+++++++|+.+
T Consensus         6 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~-----~~~v~~i~~D~~~   78 (252)
T 1qyr_A            6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMT   78 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGG
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhcc-----CCceEEEECchhh
Confidence            35567788888877778899999999999999 65 45422399999999999999987643     2479999999988


Q ss_pred             CCCCC-----CceeEEEeccc
Q 026688          126 LPFAS-----SSIDAVHAGAA  141 (235)
Q Consensus       126 ~~~~~-----~~~D~i~~~~~  141 (235)
                      .+++.     +..|.|+++..
T Consensus        79 ~~~~~~~~~~~~~~~vvsNlP   99 (252)
T 1qyr_A           79 FNFGELAEKMGQPLRVFGNLP   99 (252)
T ss_dssp             CCHHHHHHHHTSCEEEEEECC
T ss_pred             CCHHHhhcccCCceEEEECCC
Confidence            76432     23467776644

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.01  E-value=1.2e-08  Score=74.65  Aligned_cols=101  Identities=10%  Similarity=0.013  Sum_probs=74.2

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--------------
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--------------  126 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--------------  126 (235)
                      +.++|||+|||  ..+..+++. ++++|+.+|.+++..+.+++++...+.....++++..+|+.+.              
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence            36899999985  566666664 3679999999999999999999876531123789999996432              


Q ss_pred             -C--------C-CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          127 -P--------F-ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       127 -~--------~-~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                       +        . ..++||+|+...-.     ....+..+.+.|+|||.|++-.
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEETT
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEEeC
Confidence             1        1 13679999976532     2355666789999999997644

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.94  E-value=3.2e-09  Score=90.21  Aligned_cols=100  Identities=12%  Similarity=0.047  Sum_probs=74.7

Q ss_pred             CCeEEEecCCCchHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ...|||+|||+|-++...++.+    ...+|+++|-++ +...+++....+++  ..+|+++.+|+++..+| +++|+||
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~--~dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW--GSQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT--GGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC--CCeEEEEeCcceeccCC-cccCEEE
Confidence            4579999999999955544432    234799999997 66778887777776  56899999999998765 7899999


Q ss_pred             ec---ccccccCChHHHHHHHHHhccCCcEEE
Q 026688          138 AG---AAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       138 ~~---~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      +=   ..+.+-. ....+....+.|||||.++
T Consensus       434 SEwMG~fLl~E~-mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          434 SELLGSFADNEL-SPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCCCBTTBGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred             EEcCcccccccC-CHHHHHHHHHhcCCCcEEc
Confidence            62   2222222 2257778889999999876

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.94  E-value=2.5e-08  Score=86.18  Aligned_cols=134  Identities=13%  Similarity=0.010  Sum_probs=92.3

Q ss_pred             ccCCCCCCHHHHHHHHhh----cCC--CCCCeEEEecCCCchHHHHHHHcCC---CceEEEEeCCHHHHHHHH--HHhhh
Q 026688           39 VWGGFPGPEKEFELMKGY----LKP--VLGGNIIDASCGSGLFSRIFAKSGL---FSLVVALDYSENMLKQCY--EFVQQ  107 (235)
Q Consensus        39 ~~~~~~~~~~~~~~i~~~----~~~--~~~~~vLdiG~G~G~~~~~l~~~~~---~~~v~~~D~s~~~~~~a~--~~~~~  107 (235)
                      ..+.++-+..+.+.+...    +..  .++.+|||.|||+|.++..+++..+   ...++|+|+++.+++.|+  ..+..
T Consensus       293 k~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~l  372 (878)
T 3s1s_A          293 HEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLF  372 (878)
T ss_dssp             CCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred             cCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence            345667788888887776    332  3478999999999999999988753   358999999999999994  33322


Q ss_pred             cCC-CCCCCeeEEecccccC-CCCCCceeEEEecccccc-cC---------------------------C-hHHHHHHHH
Q 026688          108 ESN-FPKENFLLVRADISRL-PFASSSIDAVHAGAAIHC-WS---------------------------S-PSTGVAEIS  156 (235)
Q Consensus       108 ~~~-~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~~~l~~-~~---------------------------~-~~~~l~~~~  156 (235)
                      +.. .+.....+...|+... +.....||+|+++--+.. ..                           + ...++..+.
T Consensus       373 N~LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al  452 (878)
T 3s1s_A          373 PQLVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVT  452 (878)
T ss_dssp             TTTCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHH
T ss_pred             hhhhcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHH
Confidence            111 0012235566666552 223578999999754411 10                           1 124788999


Q ss_pred             HhccCCcEEEEEEecc
Q 026688          157 RVLRPGGVFVGTTYIV  172 (235)
Q Consensus       157 ~~L~pgG~li~~~~~~  172 (235)
                      +.|+|||.+.+..+..
T Consensus       453 ~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          453 ELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             HHSCTTCEEEEEEETH
T ss_pred             HhcCCCcEEEEEEChH
Confidence            9999999999988764

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.94  E-value=2.4e-09  Score=86.65  Aligned_cols=73  Identities=10%  Similarity=0.154  Sum_probs=62.1

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--CCCCCCCeeEEecccccC-CC-CCCceeEEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISRL-PF-ASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~d~~~~-~~-~~~~~D~i~  137 (235)
                      +.+|||+|||+|..+..+++.+.  +|+++|+|+.+++.|++++...  +   ..+++++++|+.+. +. +.+.||+|+
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~~~g---l~~i~~i~~Da~~~L~~~~~~~fDvV~  168 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLLLNE---GKDVNILTGDFKEYLPLIKTFHPDYIY  168 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHSCT---TCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHhccC---CCcEEEEECcHHHhhhhccCCCceEEE
Confidence            78999999999999999998764  9999999999999999998865  4   24799999999874 31 235899999


Q ss_pred             ec
Q 026688          138 AG  139 (235)
Q Consensus       138 ~~  139 (235)
                      +.
T Consensus       169 lD  170 (410)
T 3ll7_A          169 VD  170 (410)
T ss_dssp             EC
T ss_pred             EC
Confidence            85

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.91  E-value=1.5e-09  Score=82.84  Aligned_cols=109  Identities=15%  Similarity=0.021  Sum_probs=71.8

Q ss_pred             HHHhhcCCCCC--CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC----CCC--CCCeeEEeccc
Q 026688           52 LMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NFP--KENFLLVRADI  123 (235)
Q Consensus        52 ~i~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~--~~~~~~~~~d~  123 (235)
                      .+.+.+...++  .+|||+|||+|..+..++.++.  +|+++|+++.+.+.+++.+....    ...  ..+++++++|.
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            44555555556  8999999999999999999864  89999999987666665543210    000  13689999998


Q ss_pred             ccC-CCCCCceeEEEecccccccCChHHHHHHHHHhccCCc
Q 026688          124 SRL-PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG  163 (235)
Q Consensus       124 ~~~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG  163 (235)
                      .+. +...+.||+|++.-.+.+-. ....+++..+++++.+
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~~~~-~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFPHKQ-KSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCCC-C-----HHHHHHHHHS
T ss_pred             HHHHHhCcccCCEEEEcCCCCCcc-cchHHHHHHHHHHHhh
Confidence            763 32224799999987776532 2244555666665543

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.90  E-value=4.5e-09  Score=79.64  Aligned_cols=115  Identities=16%  Similarity=0.118  Sum_probs=74.8

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      .++.+.....+..+|||+|||+|.+++.++++.+...+.++|+..++....... ...    ..++.....++....++.
T Consensus        64 ~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~----g~~ii~~~~~~dv~~l~~  138 (277)
T 3evf_A           64 RWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSL----GWNIITFKDKTDIHRLEP  138 (277)
T ss_dssp             HHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBT----TGGGEEEECSCCTTTSCC
T ss_pred             HHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcC----CCCeEEEeccceehhcCC
Confidence            333333445567899999999999999988775555788899874431000000 000    114455556554445566


Q ss_pred             CceeEEEecccccccCCh-----H--HHHHHHHHhccCC-cEEEEEEec
Q 026688          131 SSIDAVHAGAAIHCWSSP-----S--TGVAEISRVLRPG-GVFVGTTYI  171 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~-----~--~~l~~~~~~L~pg-G~li~~~~~  171 (235)
                      ..||+|++..+.+ ....     .  .+++.+.++|+|| |.+++-.+.
T Consensus       139 ~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          139 VKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             CCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            7899999987655 2221     1  3568889999999 999997665

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.87  E-value=8.1e-08  Score=76.52  Aligned_cols=109  Identities=14%  Similarity=0.209  Sum_probs=79.5

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-----CCCCCCeeEEecccccC----CCCC
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----NFPKENFLLVRADISRL----PFAS  130 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~d~~~~----~~~~  130 (235)
                      .++++||-||.|.|..+..+++..+ .+++.+|+++.+++.|++.+....     ....++++++..|....    .-..
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~  282 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG  282 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence            3468999999999999999998654 789999999999999999875321     11124588899998642    1124


Q ss_pred             CceeEEEeccccccc-CCh---------HHHHHHHHHhccCCcEEEEEE
Q 026688          131 SSIDAVHAGAAIHCW-SSP---------STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~-~~~---------~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ++||+|+....-... .++         ..+++.+++.|+|||.++...
T Consensus       283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            679999976432111 111         367899999999999988653

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.83  E-value=1.4e-07  Score=75.23  Aligned_cols=126  Identities=14%  Similarity=0.044  Sum_probs=94.5

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC---CCCCeeEEecccccCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF---PKENFLLVRADISRLP  127 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~d~~~~~  127 (235)
                      ......+.+.++.+|||+.+|.|.-+.++++......++++|+++.-++..++++...+..   ...++.+...|....+
T Consensus       138 ~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~  217 (359)
T 4fzv_A          138 LLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG  217 (359)
T ss_dssp             HHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH
T ss_pred             HHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc
Confidence            3445567788899999999999999999999887778999999999999888888764321   1246788888887653


Q ss_pred             -CCCCceeEEEecccc--------cccCC------h----------HHHHHHHHHhccCCcEEEEEEeccCCCc
Q 026688          128 -FASSSIDAVHAGAAI--------HCWSS------P----------STGVAEISRVLRPGGVFVGTTYIVDGPF  176 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l--------~~~~~------~----------~~~l~~~~~~L~pgG~li~~~~~~~~~~  176 (235)
                       ...+.||.|++.--.        ..-++      +          .++|..+.++|||||.|+.++.+....+
T Consensus       218 ~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~E  291 (359)
T 4fzv_A          218 ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQ  291 (359)
T ss_dssp             HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTT
T ss_pred             hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhh
Confidence             345789999964221        10011      0          2678899999999999999999876533

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.80  E-value=1.3e-08  Score=86.64  Aligned_cols=102  Identities=14%  Similarity=0.102  Sum_probs=72.0

Q ss_pred             CCeEEEecCCCchHHHHHHHc----C---------CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           62 GGNIIDASCGSGLFSRIFAKS----G---------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~----~---------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      +..|||+|||+|-++...++.    +         ...+|+++|.++......+.+.. +++  ..+++++.+|+++..+
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~--~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW--KRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT--TTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC--CCeEEEEeCchhhccc
Confidence            468999999999997543222    2         23589999999977766555544 444  4579999999998765


Q ss_pred             C-----CCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEE
Q 026688          129 A-----SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       129 ~-----~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li  166 (235)
                      +     .++.|+||+=..=....+  ....|..+.+.|+|||.++
T Consensus       487 p~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            3     478999997433111111  1357777889999999876

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.76  E-value=5.2e-08  Score=74.37  Aligned_cols=86  Identities=16%  Similarity=0.219  Sum_probs=70.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ..+++.+++.+...++..+||.+||.|..+..++++  .+.|+|+|.++.+++.+++ +..      .++.++..++.++
T Consensus         8 pVLl~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l   78 (285)
T 1wg8_A            8 PVLYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHL   78 (285)
T ss_dssp             CTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGH
T ss_pred             hHHHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchH
Confidence            345677788888888899999999999999999998  4699999999999999998 642      4799999999876


Q ss_pred             C-----CCCCceeEEEeccc
Q 026688          127 P-----FASSSIDAVHAGAA  141 (235)
Q Consensus       127 ~-----~~~~~~D~i~~~~~  141 (235)
                      +     ...+++|.|++...
T Consensus        79 ~~~L~~~g~~~vDgIL~DLG   98 (285)
T 1wg8_A           79 KRHLAALGVERVDGILADLG   98 (285)
T ss_dssp             HHHHHHTTCSCEEEEEEECS
T ss_pred             HHHHHHcCCCCcCEEEeCCc
Confidence            3     12257999997543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.75  E-value=8.1e-09  Score=78.39  Aligned_cols=114  Identities=14%  Similarity=0.033  Sum_probs=73.0

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      ++.+.....+..+|||+|||+|.+++.+++..+...+.|+|+...+...+... ...    ..++.....+.....++..
T Consensus        81 ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~----g~~ii~~~~~~dv~~l~~~  155 (282)
T 3gcz_A           81 WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTL----GWNLIRFKDKTDVFNMEVI  155 (282)
T ss_dssp             HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBT----TGGGEEEECSCCGGGSCCC
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccC----CCceEEeeCCcchhhcCCC
Confidence            33333355667899999999999999988766666899999976532111100 000    1233333333222234467


Q ss_pred             ceeEEEecccccccCCh-------HHHHHHHHHhccCC--cEEEEEEec
Q 026688          132 SIDAVHAGAAIHCWSSP-------STGVAEISRVLRPG--GVFVGTTYI  171 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~-------~~~l~~~~~~L~pg--G~li~~~~~  171 (235)
                      ++|+|+|..... ....       ..+|+-+.++|+||  |.+++-.+.
T Consensus       156 ~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          156 PGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             CCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             CcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            899999987765 3322       14577778999999  999997765

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.72  E-value=2.9e-07  Score=77.43  Aligned_cols=130  Identities=17%  Similarity=0.135  Sum_probs=96.8

Q ss_pred             cCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc----C---------CCceEEEEeCCHHHHHHHHHHhh
Q 026688           40 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----G---------LFSLVVALDYSENMLKQCYEFVQ  106 (235)
Q Consensus        40 ~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~---------~~~~v~~~D~s~~~~~~a~~~~~  106 (235)
                      .+.+.-|....+.+.+.+.+.++.+|+|.+||+|.++....+.    .         ....++|+|+++.+...|+-++.
T Consensus       196 ~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~  275 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL  275 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence            3567788999999999999888899999999999998876543    1         12469999999999999998877


Q ss_pred             hcCCCCCCCeeEEecccccCCC----CCCceeEEEeccccccc---------C------Ch-HHHHHHHHHhcc------
Q 026688          107 QESNFPKENFLLVRADISRLPF----ASSSIDAVHAGAAIHCW---------S------SP-STGVAEISRVLR------  160 (235)
Q Consensus       107 ~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~i~~~~~l~~~---------~------~~-~~~l~~~~~~L~------  160 (235)
                      .++   ....++..+|....+.    ....||+|+++--+.--         +      +. ..++..+.+.|+      
T Consensus       276 lhg---~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l  352 (530)
T 3ufb_A          276 LHG---LEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGS  352 (530)
T ss_dssp             HHT---CSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSS
T ss_pred             hcC---CccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhcc
Confidence            665   3345677788765432    23579999998554211         0      01 256788888886      


Q ss_pred             -CCcEEEEEEecc
Q 026688          161 -PGGVFVGTTYIV  172 (235)
Q Consensus       161 -pgG~li~~~~~~  172 (235)
                       |||++.++.+..
T Consensus       353 ~~gGr~avVlP~g  365 (530)
T 3ufb_A          353 DNGGRAAVVVPNG  365 (530)
T ss_dssp             SSCCEEEEEEEHH
T ss_pred             CCCceEEEEecch
Confidence             799999988753

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.62  E-value=1.7e-07  Score=72.20  Aligned_cols=108  Identities=10%  Similarity=0.092  Sum_probs=80.2

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcC-----CCceEEEEeCCHH--------------------------HHHHHHHHhhhc
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSEN--------------------------MLKQCYEFVQQE  108 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~-----~~~~v~~~D~s~~--------------------------~~~~a~~~~~~~  108 (235)
                      ..++.|||+|+..|..+..++...     ++.+++++|..+.                          .++.+++++...
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            447899999999999988876542     3678999996421                          467788888876


Q ss_pred             CCCCCCCeeEEeccccc-CC-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          109 SNFPKENFLLVRADISR-LP-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       109 ~~~~~~~~~~~~~d~~~-~~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +.. ..+++++.+|+.+ ++ .+.++||+|++..-.+  ......+..+.+.|+|||.|++-+.
T Consensus       185 gl~-~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          185 DLL-DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             TCC-STTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCC-cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            641 2589999999976 33 3356899999765321  2234679999999999999988654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.60  E-value=1.2e-07  Score=64.70  Aligned_cols=97  Identities=12%  Similarity=0.113  Sum_probs=60.6

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCc-hHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSG-LFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G-~~~~~l~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      .+.|.+...  ++.+|||||||.| ..+..|++ .+.  .|+++|+++..++                  +++.|+.+..
T Consensus        26 aeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av~------------------~v~dDiF~P~   83 (153)
T 2k4m_A           26 AVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHGG------------------IVRDDITSPR   83 (153)
T ss_dssp             HHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSSTT------------------EECCCSSSCC
T ss_pred             HHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCccccc------------------eEEccCCCCc
Confidence            334444343  3679999999999 69999987 554  8999999885432                  7888887632


Q ss_pred             CCC-CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          128 FAS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       128 ~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ... +.||+|.+...-   ++.+..+.++.+.+  |.-++|.....+
T Consensus        84 ~~~Y~~~DLIYsirPP---~El~~~i~~lA~~v--~adliI~pL~~E  125 (153)
T 2k4m_A           84 MEIYRGAALIYSIRPP---AEIHSSLMRVADAV--GARLIIKPLTGE  125 (153)
T ss_dssp             HHHHTTEEEEEEESCC---TTTHHHHHHHHHHH--TCEEEEECBTTB
T ss_pred             ccccCCcCEEEEcCCC---HHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence            211 489999652211   12233344444432  567777666543

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.57  E-value=5e-06  Score=66.05  Aligned_cols=88  Identities=17%  Similarity=0.160  Sum_probs=64.4

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      ..++.++||+||.+|.++..+++++.  .|++||+.+ +-....    .     .+++++...|......+...+|+|+|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~-l~~~l~----~-----~~~V~~~~~d~~~~~~~~~~~D~vvs  276 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGP-MAQSLM----D-----TGQVTWLREDGFKFRPTRSNISWMVC  276 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSC-CCHHHH----T-----TTCEEEECSCTTTCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhh-cChhhc----c-----CCCeEEEeCccccccCCCCCcCEEEE
Confidence            34589999999999999999999865  999999864 222211    1     45899999999887666678999998


Q ss_pred             cccccccCChHHHHHHHHHhccCC
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPG  162 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pg  162 (235)
                      ..+.    ++...+..+.+.+..+
T Consensus       277 Dm~~----~p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          277 DMVE----KPAKVAALMAQWLVNG  296 (375)
T ss_dssp             CCSS----CHHHHHHHHHHHHHTT
T ss_pred             cCCC----ChHHhHHHHHHHHhcc
Confidence            6654    3545555555544443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.44  E-value=5.4e-07  Score=68.90  Aligned_cols=106  Identities=14%  Similarity=0.130  Sum_probs=67.3

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .++.+|||+||++|.++..+++..+...|.|+|+...+...... ....    ..++.....+..-..+....+|+|++.
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~----~~~iv~~~~~~di~~l~~~~~DlVlsD  154 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTL----GWNIVKFKDKSNVFTMPTEPSDTLLCD  154 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBT----TGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cccc----CCceEEeecCceeeecCCCCcCEEeec
Confidence            46889999999999999999987555678899997532100000 0000    112222222222222345789999997


Q ss_pred             ccccccCCh-------HHHHHHHHHhccCC-cEEEEEEec
Q 026688          140 AAIHCWSSP-------STGVAEISRVLRPG-GVFVGTTYI  171 (235)
Q Consensus       140 ~~l~~~~~~-------~~~l~~~~~~L~pg-G~li~~~~~  171 (235)
                      .... ....       ..++.-+.++|+|| |.+++-.+.
T Consensus       155 ~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          155 IGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             CcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            6655 3322       24577778999999 999998765

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.39  E-value=1.9e-06  Score=67.36  Aligned_cols=62  Identities=18%  Similarity=0.202  Sum_probs=53.7

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  108 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~  108 (235)
                      +-+.++.+.+++... .++..|||++||+|..+..+++.+.  +++|+|+++.+++.|++++...
T Consensus       219 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          219 PFPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CSCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            446678888888776 4578999999999999999999876  9999999999999999998764

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=98.31  E-value=1.4e-07  Score=91.95  Aligned_cols=148  Identities=16%  Similarity=0.148  Sum_probs=71.2

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCC-----CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCce
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSI  133 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~-----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~  133 (235)
                      .+..+|||||.|+|..+..+.+...     ..+++..|+|+...+.+++++...      .+.....|..+. ++..+.|
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~y 1312 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKA 1312 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----C
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCce
Confidence            3467999999999987666554421     347999999998888877766432      222222233321 2345679


Q ss_pred             eEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhc-CCceeecCHHHHHHHHHHcC
Q 026688          134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI-SGSYTFLSEREIEDLCRACG  212 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~G  212 (235)
                      |+|++..++|..++....+++++++|+|||.+++.+......  .    ......+... .......+.++|..+|..+|
T Consensus      1313 dlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~--~----g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~g 1386 (2512)
T 2vz8_A         1313 DLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHP--L----GEMVGFLTSPEQGGRHLLSQDQWESLFAGAS 1386 (2512)
T ss_dssp             CEEEEECC--------------------CCEEEEEEC--------------------------------CTTTTSSTTTT
T ss_pred             eEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEecccccc--c----cccccccccccccCCcccCHHHHHHHHHhCC
Confidence            999999999877788889999999999999999876542110  0    0000000000 01123467788888999999


Q ss_pred             CceeEEE
Q 026688          213 LVDFKCT  219 (235)
Q Consensus       213 f~~~~~~  219 (235)
                      |..+...
T Consensus      1387 f~~~~~~ 1393 (2512)
T 2vz8_A         1387 LHLVALK 1393 (2512)
T ss_dssp             EEEEEEE
T ss_pred             Cceeeec
Confidence            9876654

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.31  E-value=9.6e-06  Score=61.83  Aligned_cols=115  Identities=16%  Similarity=0.102  Sum_probs=75.4

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-ccccCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPF  128 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~  128 (235)
                      +..+.+.....++.+|||+||++|.++..++.......|.|+|+-..--+.-+ .....+   ..-+.+... |+..++.
T Consensus        83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~---w~lV~~~~~~Dv~~l~~  158 (321)
T 3lkz_A           83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYG---WNIVTMKSGVDVFYRPS  158 (321)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTT---GGGEEEECSCCTTSSCC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcC---CcceEEEeccCHhhCCC
Confidence            34444445556788999999999999998877755558999999653110000 000111   123677766 7766553


Q ss_pred             CCCceeEEEecccccccCChH-------HHHHHHHHhccCC-cEEEEEEec
Q 026688          129 ASSSIDAVHAGAAIHCWSSPS-------TGVAEISRVLRPG-GVFVGTTYI  171 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~-------~~l~~~~~~L~pg-G~li~~~~~  171 (235)
                        ..+|+|+|.-. +.-+++.       .+|.-+.+.|++| |.+.+-.+.
T Consensus       159 --~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~  206 (321)
T 3lkz_A          159 --ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC  206 (321)
T ss_dssp             --CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             --CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence              66999999877 6556652       3566667889988 888876554

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=98.29  E-value=7.4e-06  Score=64.85  Aligned_cols=152  Identities=13%  Similarity=0.142  Sum_probs=98.7

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCC------------------CCCCCeeEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN------------------FPKENFLLVRA  121 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------------------~~~~~~~~~~~  121 (235)
                      .+...|+.+|||.......+....+...++-+|. |++++.-++.+...+.                  ....+..++..
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            4568999999999999998887656556666666 7788777776655310                  00257889999


Q ss_pred             ccccCC--------C-CCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh
Q 026688          122 DISRLP--------F-ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM  190 (235)
Q Consensus       122 d~~~~~--------~-~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~  190 (235)
                      |+.+..        . ..+...++++=.++.+++..  .++++.+.+.. |+|.+++.+..... ....++...+...+.
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~-~~~~~fg~~m~~~l~  252 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGS-QPNDRFGAIMQSNLK  252 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCC-STTCCHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCC-CCcchHHHHHHHHhh
Confidence            997632        1 22457788888888888754  47778787776 77777665554431 112233332222222


Q ss_pred             h-----cCCceeecCHHHHHHHHHHcCCc
Q 026688          191 Q-----ISGSYTFLSEREIEDLCRACGLV  214 (235)
Q Consensus       191 ~-----~~~~~~~~~~~~~~~~l~~~Gf~  214 (235)
                      .     ..+...+.++++..+.|.++||.
T Consensus       253 ~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          253 ESRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             cccCCcccccccCCCHHHHHHHHHHCCCC
Confidence            1     11112456899999999999997

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.29  E-value=2e-05  Score=58.99  Aligned_cols=110  Identities=16%  Similarity=0.080  Sum_probs=67.8

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCC-CCe---eEEec-cccc
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-ENF---LLVRA-DISR  125 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-~~~---~~~~~-d~~~  125 (235)
                      .+|.+..-.+++.+|||+||+.|.+++..++.-....|.|.++.... .     +  .+..+. .++   .+..+ |+.+
T Consensus        63 ~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~--~P~~~~~~Gv~~i~~~~G~Df~~  134 (269)
T 2px2_A           63 RWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----E--EPMLMQSYGWNIVTMKSGVDVFY  134 (269)
T ss_dssp             HHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----C--CCCCCCSTTGGGEEEECSCCGGG
T ss_pred             HHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----c--CCCcccCCCceEEEeeccCCccC
Confidence            34444334456899999999999999999886322244555554321 0     0  011001 233   44446 9877


Q ss_pred             CCCCCCceeEEEecccccccCCh-------HHHHHHHHHhccCCc-EEEEEEec
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSP-------STGVAEISRVLRPGG-VFVGTTYI  171 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~-------~~~l~~~~~~L~pgG-~li~~~~~  171 (235)
                      .+  ...+|+|+|...-. -.+.       ..++.-+.+.|+||| .+++-.+.
T Consensus       135 ~~--~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          135 KP--SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             SC--CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             CC--CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence            43  45799999976543 2222       135666778999999 88887665

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.26  E-value=1.7e-06  Score=67.57  Aligned_cols=89  Identities=19%  Similarity=0.230  Sum_probs=70.9

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ..+++.+++.+...++..++|..||.|..+..++++ ++.++|+|+|.++.+++.++ ++.      ..+++++..++.+
T Consensus        43 pVLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~------~~Rv~lv~~nF~~  115 (347)
T 3tka_A           43 TVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID------DPRFSIIHGPFSA  115 (347)
T ss_dssp             CTTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC------CTTEEEEESCGGG
T ss_pred             cccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc------CCcEEEEeCCHHH
Confidence            346677888888888999999999999999999887 57789999999999999984 431      4589999999987


Q ss_pred             CC--CC----CCceeEEEecccc
Q 026688          126 LP--FA----SSSIDAVHAGAAI  142 (235)
Q Consensus       126 ~~--~~----~~~~D~i~~~~~l  142 (235)
                      +.  ++    .+++|.|++...+
T Consensus       116 l~~~L~~~g~~~~vDgILfDLGV  138 (347)
T 3tka_A          116 LGEYVAERDLIGKIDGILLDLGV  138 (347)
T ss_dssp             HHHHHHHTTCTTCEEEEEEECSC
T ss_pred             HHHHHHhcCCCCcccEEEECCcc
Confidence            53  11    1369999986443

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.16  E-value=4.7e-05  Score=56.22  Aligned_cols=115  Identities=16%  Similarity=0.114  Sum_probs=75.5

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-ccccCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPF  128 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~  128 (235)
                      +..+.+.....++.+|||+||++|.++..++.......|.|+|+-..-.+.- ......+   ...++|..+ |+..++ 
T Consensus        67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~g---wn~v~fk~gvDv~~~~-  141 (267)
T 3p8z_A           67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYG---WNIVKLMSGKDVFYLP-  141 (267)
T ss_dssp             HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTT---TTSEEEECSCCGGGCC-
T ss_pred             HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcC---cCceEEEeccceeecC-
Confidence            3444444455678899999999999999888775556899999865322100 0001122   246889988 976654 


Q ss_pred             CCCceeEEEecccccccCChH-------HHHHHHHHhccCCcEEEEEEecc
Q 026688          129 ASSSIDAVHAGAAIHCWSSPS-------TGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~-------~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                       ...+|.|+|...- .-+++.       ++|+-+.+.|++ |.+.+-...+
T Consensus       142 -~~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p  189 (267)
T 3p8z_A          142 -PEKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP  189 (267)
T ss_dssp             -CCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred             -CccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence             2669999997655 334431       356666788988 7777755543

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=98.15  E-value=5.1e-05  Score=59.39  Aligned_cols=151  Identities=13%  Similarity=0.029  Sum_probs=97.7

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---------CCCCc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------FASSS  132 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~  132 (235)
                      ...|+++|||.=.....+.. .....++-+| .|.+++..++.+...+..+..+..++.+|+.+ .         +....
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA  179 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred             CCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence            46899999998766554431 2236888888 59999999888875433234578889999875 2         22234


Q ss_pred             eeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHH-HhHhhcC-------Cceee-cC-
Q 026688          133 IDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QNMMQIS-------GSYTF-LS-  200 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~-~~-  200 (235)
                      .=++++-.+++++++.  ..+++.+.+.+.||+.|++.....+.. .......... ..+....       ....+ .+ 
T Consensus       180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  258 (310)
T 2uyo_A          180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGD-EWREQMQLRFRRVSDALGFEQAVDVQELIYHDEN  258 (310)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCS-HHHHHHHHHHHHHHC-----------CCTTCCTT
T ss_pred             CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCc-chhHHHHHHHHHHHHHcCCcCCCCccccccCCCC
Confidence            5677777888888754  478889999889999999887654321 0001112111 2222111       12222 35 


Q ss_pred             HHHHHHHHHHcCCcee
Q 026688          201 EREIEDLCRACGLVDF  216 (235)
Q Consensus       201 ~~~~~~~l~~~Gf~~~  216 (235)
                      .+++.+.|.++||+.+
T Consensus       259 ~~~~~~~f~~~G~~~~  274 (310)
T 2uyo_A          259 RAVVADWLNRHGWRAT  274 (310)
T ss_dssp             CCCHHHHHTTTTEEEE
T ss_pred             hHHHHHHHHHCcCccc
Confidence            7899999999999877

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=98.06  E-value=0.00012  Score=56.71  Aligned_cols=141  Identities=13%  Similarity=0.076  Sum_probs=85.3

Q ss_pred             CCCeEEEecCCCchHHHHH----HHcCCCc--eEEEEeCCH--------H-HHHHHHHHhhhcCCCCCC--CeeEEeccc
Q 026688           61 LGGNIIDASCGSGLFSRIF----AKSGLFS--LVVALDYSE--------N-MLKQCYEFVQQESNFPKE--NFLLVRADI  123 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l----~~~~~~~--~v~~~D~s~--------~-~~~~a~~~~~~~~~~~~~--~~~~~~~d~  123 (235)
                      +.-+|||+|-|+|.+....    .+..+..  .++.+|..+        . .-+.........+.....  .+++..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            3468999999999865432    2334544  456666421        1 111122222211100022  356778888


Q ss_pred             cc-CC-CCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCcee
Q 026688          124 SR-LP-FASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT  197 (235)
Q Consensus       124 ~~-~~-~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (235)
                      .+ ++ +....+|+|+....-- -.+|    ..+++.++++++|||.+.-  +.                          
T Consensus       176 ~~~l~~l~~~~~Da~flDgFsP-~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt--------------------------  226 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDAFSP-YKNPELWTLDFLSLIKERIDEKGYWVS--YS--------------------------  226 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECCSCT-TTSGGGGSHHHHHHHHTTEEEEEEEEE--SC--------------------------
T ss_pred             HHHHhhhcccceeEEEeCCCCc-ccCcccCCHHHHHHHHHHhCCCcEEEE--Ee--------------------------
Confidence            65 33 3445799999755322 2345    4899999999999998762  22                          


Q ss_pred             ecCHHHHHHHHHHcCCceeEEEeeC-cEEEEEEecC
Q 026688          198 FLSEREIEDLCRACGLVDFKCTRNR-GFVMFTATKP  232 (235)
Q Consensus       198 ~~~~~~~~~~l~~~Gf~~~~~~~~~-~~~~~~~~k~  232 (235)
                        ....+++.|.++||++.+....+ ..-+.+|.++
T Consensus       227 --aag~VRR~L~~aGF~V~k~~G~g~KReml~A~~~  260 (308)
T 3vyw_A          227 --SSLSVRKSLLTLGFKVGSSREIGRKRKGTVASLK  260 (308)
T ss_dssp             --CCHHHHHHHHHTTCEEEEEECC---CEEEEEESS
T ss_pred             --CcHHHHHHHHHCCCEEEecCCCCCCCceeEEecC
Confidence              23568899999999988877655 4577777765

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.98  E-value=3.2e-05  Score=59.12  Aligned_cols=62  Identities=19%  Similarity=0.190  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  108 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~  108 (235)
                      +-+..+++.+++... .++..|||..||+|..+....+.+.  +++|+|+++..++.+++++...
T Consensus       196 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhc
Confidence            446778888887765 4578999999999999999998876  9999999999999999998653

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.89  E-value=5.5e-05  Score=60.15  Aligned_cols=75  Identities=13%  Similarity=0.072  Sum_probs=60.9

Q ss_pred             CHHHHHHHHhhcCCC------CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEE
Q 026688           46 PEKEFELMKGYLKPV------LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  119 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~  119 (235)
                      .....+.|.+.+...      ++..|||||.|.|.++..|++.....+|+++|+++.++...++.. .     ..+++++
T Consensus        37 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii  110 (353)
T 1i4w_A           37 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQIL  110 (353)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEE
T ss_pred             CHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEE
Confidence            567788888887654      358899999999999999998632348999999999999888776 2     3579999


Q ss_pred             ecccccC
Q 026688          120 RADISRL  126 (235)
Q Consensus       120 ~~d~~~~  126 (235)
                      .+|+.++
T Consensus       111 ~~D~l~~  117 (353)
T 1i4w_A          111 KRDPYDW  117 (353)
T ss_dssp             CSCTTCH
T ss_pred             ECCccch
Confidence            9999654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.61  E-value=0.00068  Score=51.81  Aligned_cols=105  Identities=12%  Similarity=0.077  Sum_probs=69.2

Q ss_pred             HHHHHhhcC-----CCCCCeEEEecC------CCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCee
Q 026688           50 FELMKGYLK-----PVLGGNIIDASC------GSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFL  117 (235)
Q Consensus        50 ~~~i~~~~~-----~~~~~~vLdiG~------G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~  117 (235)
                      ..++.++++     .+.+.+|||+|+      -+|.  ..+.+.+|. +.++++|+.+-..              ... .
T Consensus        93 ytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s--------------da~-~  155 (344)
T 3r24_A           93 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS--------------DAD-S  155 (344)
T ss_dssp             HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC--------------SSS-E
T ss_pred             HHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc--------------CCC-e
Confidence            345555553     234799999997      4455  455566775 5999999976210              122 4


Q ss_pred             EEecccccCCCCCCceeEEEecccc---cccC--C------hHHHHHHHHHhccCCcEEEEEEecc
Q 026688          118 LVRADISRLPFASSSIDAVHAGAAI---HCWS--S------PSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       118 ~~~~d~~~~~~~~~~~D~i~~~~~l---~~~~--~------~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ++++|+..... ..+||+|++...-   .+.+  .      .+.++.-+.+.|+|||.+++-.+-.
T Consensus       156 ~IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG  220 (344)
T 3r24_A          156 TLIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  220 (344)
T ss_dssp             EEESCGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             EEEcccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence            58999765432 4789999986332   2211  1      1456777889999999999987654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.48  E-value=0.0022  Score=50.89  Aligned_cols=76  Identities=14%  Similarity=0.147  Sum_probs=55.3

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---CCCCceeEEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~i~  137 (235)
                      ..+++|+.||.|.++..+...+.. ..+.++|+++..++..+.+..        ...+.+.|+.+..   ++...+|+++
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~--------~~~~~~~Di~~~~~~~~~~~~~D~l~   73 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP--------HTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc--------ccccccCCHHHccHhHcCcCCcCEEE
Confidence            358999999999999999988732 368999999999999888753        3446788887753   1112689999


Q ss_pred             eccccccc
Q 026688          138 AGAAIHCW  145 (235)
Q Consensus       138 ~~~~l~~~  145 (235)
                      ...-+..+
T Consensus        74 ~gpPCq~f   81 (343)
T 1g55_A           74 MSPPCQPF   81 (343)
T ss_dssp             ECCC----
T ss_pred             EcCCCcch
Confidence            86554333

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.43  E-value=0.0057  Score=48.15  Aligned_cols=139  Identities=14%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCC-ceE-EEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---CCCCceeEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLF-SLV-VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAV  136 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~-~~v-~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~i  136 (235)
                      ..+++|+-||.|.++.-+.+.+.. ..+ .++|+++..++..+.+...       .  +...|+.++.   ++...+|++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-------~--~~~~DI~~~~~~~i~~~~~Dil   80 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-------E--VQVKNLDSISIKQIESLNCNTW   80 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-------C--CBCCCTTTCCHHHHHHTCCCEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-------C--cccCChhhcCHHHhccCCCCEE
Confidence            468999999999999999988732 356 7999999999888887632       1  4567776653   222368999


Q ss_pred             Eeccccccc-----------CChH-HHHHHHHH-hc-----cCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceee
Q 026688          137 HAGAAIHCW-----------SSPS-TGVAEISR-VL-----RPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF  198 (235)
Q Consensus       137 ~~~~~l~~~-----------~~~~-~~l~~~~~-~L-----~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (235)
                      +...-+..+           .++. ..+.++.+ ++     +|  .+++.+....    ...                 .
T Consensus        81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P--~~~~lENV~g----l~~-----------------~  137 (327)
T 3qv2_A           81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKP--KHIFIENVPL----FKE-----------------S  137 (327)
T ss_dssp             EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCC--SEEEEEECGG----GGG-----------------S
T ss_pred             EecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCC--CEEEEEchhh----hcC-----------------h
Confidence            976555444           2332 45555555 44     45  3444443321    000                 0


Q ss_pred             cCHHHHHHHHHHcCCceeEEE---------eeCcEEEEEEecC
Q 026688          199 LSEREIEDLCRACGLVDFKCT---------RNRGFVMFTATKP  232 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~---------~~~~~~~~~~~k~  232 (235)
                      -..+.+.+.|++.|+.+....         ......++++.+.
T Consensus       138 ~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~  180 (327)
T 3qv2_A          138 LVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLT  180 (327)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESS
T ss_pred             HHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeC
Confidence            124677888899999865443         2234567777654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.43  E-value=0.0048  Score=49.61  Aligned_cols=74  Identities=23%  Similarity=0.280  Sum_probs=56.9

Q ss_pred             CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC--------CCCcee
Q 026688           63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--------ASSSID  134 (235)
Q Consensus        63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D  134 (235)
                      .+++|+-||.|.++.-+.+.+. ..+.++|+++..++..+.+.        +...+++.|+.+...        ....+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N~--------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D   73 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINF--------PRSLHVQEDVSLLNAEIIKGFFKNDMPID   73 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHHC--------TTSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHhC--------CCCceEecChhhcCHHHHHhhcccCCCee
Confidence            5899999999999999998874 35779999999988887763        345677888877531        236799


Q ss_pred             EEEeccccccc
Q 026688          135 AVHAGAAIHCW  145 (235)
Q Consensus       135 ~i~~~~~l~~~  145 (235)
                      +|+...-+..+
T Consensus        74 ~i~ggpPCQ~f   84 (376)
T 3g7u_A           74 GIIGGPPCQGF   84 (376)
T ss_dssp             EEEECCCCCTT
T ss_pred             EEEecCCCCCc
Confidence            99976555444

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.42  E-value=0.00013  Score=55.79  Aligned_cols=105  Identities=9%  Similarity=-0.029  Sum_probs=79.4

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CC---CCCCceeEEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP---FASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~~D~i~  137 (235)
                      +..+||+=+|||.++..+...+  .+++.+|.++..++..++++..     ..++++...|... +.   .+...||+|+
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~l~~~~~~fdLVf  164 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNALLPPPEKRGLIF  164 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHHHCSCTTSCEEEE
T ss_pred             CCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHHhcCCCCCccEEE
Confidence            4678999999999999998854  4999999999999988887754     4579999999754 21   2345799999


Q ss_pred             ecccccccCChHHHHHHHHH--hccCCcEEEEEEeccC
Q 026688          138 AGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYIVD  173 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~--~L~pgG~li~~~~~~~  173 (235)
                      +.-.++.-.+..+++..+.+  .+.|+|.+++--+..+
T Consensus       165 iDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~  202 (283)
T 2oo3_A          165 IDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN  202 (283)
T ss_dssp             ECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred             ECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence            87766633344566665555  4568999998877653

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=97.38  E-value=0.024  Score=44.71  Aligned_cols=153  Identities=10%  Similarity=0.106  Sum_probs=93.1

Q ss_pred             CCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcC--------------C------CCCCCeeEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES--------------N------FPKENFLLV  119 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~--------------~------~~~~~~~~~  119 (235)
                      +...|+-+|||.-.....+.... +...++=+|. |+.++.=++.+...+              .      ....+.+++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v  168 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI  168 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence            46799999999987777776542 3345555555 555554333333210              0      013467888


Q ss_pred             ecccccC----------CCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH
Q 026688          120 RADISRL----------PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ  187 (235)
Q Consensus       120 ~~d~~~~----------~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~  187 (235)
                      ..|+.+.          .+.....=++++=.++.+++..  .++++.+.+... +|.+++.++...    ..++......
T Consensus       169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p----~d~fg~~M~~  243 (334)
T 3iei_A          169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNM----GDRFGQIMIE  243 (334)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCT----TSHHHHHHHH
T ss_pred             ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCC----CCHHHHHHHH
Confidence            8998652          1333455577777788877644  477888877765 455555565532    2344444333


Q ss_pred             hHhhc----CCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          188 NMMQI----SGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       188 ~~~~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      .+...    .+...+.++++..+.+.++||+.+...
T Consensus       244 ~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~  279 (334)
T 3iei_A          244 NLRRRQCDLAGVETCKSLESQKERLLSNGWETASAV  279 (334)
T ss_dssp             HHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEE
T ss_pred             HHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceee
Confidence            33322    222356788999999999999986654

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.23  E-value=0.0074  Score=47.66  Aligned_cols=140  Identities=14%  Similarity=0.135  Sum_probs=86.3

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---CCCCceeEEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~i~  137 (235)
                      ..+++|+-||.|.++.-+.+.+.. ..+.++|+++...+..+.+..        ...+...|+.++.   ++...+|+++
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~--------~~~~~~~DI~~~~~~~~~~~~~D~l~   74 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP--------ETNLLNRNIQQLTPQVIKKWNVDTIL   74 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------TSCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC--------CCceeccccccCCHHHhccCCCCEEE
Confidence            358999999999999999888742 357899999999888877643        3446677887653   2223689999


Q ss_pred             eccccccc---------CChH-HHHHHHH---Hhcc-CCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHH
Q 026688          138 AGAAIHCW---------SSPS-TGVAEIS---RVLR-PGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  203 (235)
Q Consensus       138 ~~~~l~~~---------~~~~-~~l~~~~---~~L~-pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (235)
                      ...-...+         .++. ..+.++.   +.++ |  .+++.+....-    ..                 .-..+.
T Consensus        75 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl----~~-----------------~~~~~~  131 (333)
T 4h0n_A           75 MSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGF----EN-----------------STVRNL  131 (333)
T ss_dssp             ECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTG----GG-----------------SHHHHH
T ss_pred             ecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhh----hh-----------------hhHHHH
Confidence            76444333         2222 2333333   3444 5  34444443210    00                 012357


Q ss_pred             HHHHHHHcCCceeEEE---------eeCcEEEEEEecC
Q 026688          204 IEDLCRACGLVDFKCT---------RNRGFVMFTATKP  232 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~---------~~~~~~~~~~~k~  232 (235)
                      +.+.|++.|+.+....         ......++++.+.
T Consensus       132 i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~  169 (333)
T 4h0n_A          132 FIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRN  169 (333)
T ss_dssp             HHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEET
T ss_pred             HHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeC
Confidence            7888899999865443         2234567777654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.02  E-value=0.05  Score=42.78  Aligned_cols=72  Identities=18%  Similarity=0.184  Sum_probs=53.3

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCCceeEEEecc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGA  140 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~~  140 (235)
                      ..+++|+.||.|.++..+...+. ..+.++|+++..++..+.+....       .   ..|+.++.. .-..+|+|+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~~-------~---~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK-------P---EGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC-------C---BSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCC-------C---cCCHHHcCHhhCCCCCEEEECC
Confidence            47899999999999999998874 46889999999999888876421       1   577766431 113589999764


Q ss_pred             cccc
Q 026688          141 AIHC  144 (235)
Q Consensus       141 ~l~~  144 (235)
                      -+..
T Consensus        80 PCQ~   83 (327)
T 2c7p_A           80 PCQA   83 (327)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            4433

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.97  E-value=0.0024  Score=50.27  Aligned_cols=62  Identities=11%  Similarity=0.039  Sum_probs=52.5

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  108 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~  108 (235)
                      +-+..+++.+++... .++..|||.-||+|..+....+.+.  +++|+|+++...+.+++++...
T Consensus       236 ~kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          236 RFPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             CCCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCS
T ss_pred             cCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHhc
Confidence            445678888887654 4578999999999999999988876  9999999999999999988654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.94  E-value=0.0031  Score=49.50  Aligned_cols=61  Identities=21%  Similarity=0.327  Sum_probs=51.6

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCH---HHHHHHHHHhhh
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE---NMLKQCYEFVQQ  107 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~---~~~~~a~~~~~~  107 (235)
                      +-+..+++.++.... .++..|||.-||+|..+....+.+.  +++|+|+++   ..++.+++++..
T Consensus       226 ~kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          226 QKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             CCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHH
Confidence            456788888887765 4578999999999999999998876  999999999   999999998764

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.78  E-value=0.0056  Score=49.84  Aligned_cols=63  Identities=8%  Similarity=-0.019  Sum_probs=48.8

Q ss_pred             CCCCCeEEEecCCCchHHHHHH-HcCCC-ceEEEEeCCHHHHHHHHHHhhh--cCCCCC-CCeeEEeccc
Q 026688           59 PVLGGNIIDASCGSGLFSRIFA-KSGLF-SLVVALDYSENMLKQCYEFVQQ--ESNFPK-ENFLLVRADI  123 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~-~~~~~-~~v~~~D~s~~~~~~a~~~~~~--~~~~~~-~~~~~~~~d~  123 (235)
                      ..++..++|+|++.|..+..++ +..+. .+|+++|++|...+..++++..  ++.  . .+++++..-+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~--~~~~v~~~~~al  291 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTN--FASRITVHGCGA  291 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTST--TGGGEEEECSEE
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccC--CCCCEEEEEeEE
Confidence            3568999999999999999888 45543 6999999999999999998876  221  2 4666655444

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.70  E-value=0.012  Score=47.23  Aligned_cols=101  Identities=14%  Similarity=0.135  Sum_probs=65.4

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc----C-CC
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----L-PF  128 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~-~~  128 (235)
                      +.....++.+||.+|+|. |..+..+++..--..|+++|.+++-++.+++.-.        . .++..+-.+    + ..
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa--------~-~vi~~~~~~~~~~~~~~  254 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA--------T-HVINSKTQDPVAAIKEI  254 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC--------S-EEEETTTSCHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC--------C-EEecCCccCHHHHHHHh
Confidence            445566789999999986 7777777775321269999999998888865311        1 112111111    0 11


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ..+.+|+|+-...      ....+..+.++|+|+|++++...
T Consensus       255 ~~gg~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          255 TDGGVNFALESTG------SPEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             TTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             cCCCCcEEEECCC------CHHHHHHHHHHHhcCCEEEEeCC
Confidence            1237999984332      12467889999999999987654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.70  E-value=0.025  Score=42.73  Aligned_cols=107  Identities=16%  Similarity=0.155  Sum_probs=70.8

Q ss_pred             CCeEEEecCCCchHHHHHHHc-------CCCceEEEEe-----CCHH-------------------HHHHHHHHh-----
Q 026688           62 GGNIIDASCGSGLFSRIFAKS-------GLFSLVVALD-----YSEN-------------------MLKQCYEFV-----  105 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~-------~~~~~v~~~D-----~s~~-------------------~~~~a~~~~-----  105 (235)
                      ++.|+|+|+-.|..+..++..       ++..+++++|     +.+.                   ..+..++.+     
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            689999999999988876542       3567999999     2210                   011112111     


Q ss_pred             -hhcCCCCCCCeeEEecccccC-C-----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          106 -QQESNFPKENFLLVRADISRL-P-----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       106 -~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                       ...+.. ..+++++.+++.+. |     .+...+|++.+..-.  .......+..+...|+|||.|++-+..
T Consensus       150 ~~~~g~~-~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          150 SDFFGHV-TQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             TSTTTTS-CCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhhcCCC-CCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence             112211 26899999999763 2     234579999976632  223346788999999999999987754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.64  E-value=0.011  Score=51.59  Aligned_cols=129  Identities=16%  Similarity=0.145  Sum_probs=79.8

Q ss_pred             CCCeEEEecCCCchHHHHHHHcC-------C-----CceEEEEeC---CHHHHHHHH-----------HHhhhcCC----
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSG-------L-----FSLVVALDY---SENMLKQCY-----------EFVQQESN----  110 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~-------~-----~~~v~~~D~---s~~~~~~a~-----------~~~~~~~~----  110 (235)
                      +.-+|+|+|.|+|.....+.+..       |     ...++.+|.   +.+.+..+-           +.+..+..    
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            35699999999998877664431       1     256899998   444444322           22222211    


Q ss_pred             -------CCCCCeeEEeccccc-CC-CC---CCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEEEeccCC
Q 026688          111 -------FPKENFLLVRADISR-LP-FA---SSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDG  174 (235)
Q Consensus       111 -------~~~~~~~~~~~d~~~-~~-~~---~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~~  174 (235)
                             .....+++..+|+.+ ++ +.   ...+|+++....--. .+|    ..++..+.++++|||.+.-  ..   
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~-~np~~w~~~~~~~l~~~~~~g~~~~t--~~---  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPA-KNPDMWNEQLFNAMARMTRPGGTFST--FT---  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEE--SC---
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCC-CChhhhhHHHHHHHHHHhCCCCEEEe--cc---
Confidence                   001245667778754 22 21   367999997653322 222    5789999999999997652  11   


Q ss_pred             CcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          175 PFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                                               ....+++.|.++||.+.+...
T Consensus       212 -------------------------~~~~vr~~l~~aGf~~~~~~~  232 (689)
T 3pvc_A          212 -------------------------AAGFVRRGLQQAGFNVTKVKG  232 (689)
T ss_dssp             -------------------------CCHHHHHHHHHTTCEEEEEEC
T ss_pred             -------------------------CcHHHHHHHHhCCeEEEeccC
Confidence                                     224678888999998766553

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.62  E-value=0.04  Score=47.83  Aligned_cols=128  Identities=15%  Similarity=0.095  Sum_probs=78.8

Q ss_pred             CCeEEEecCCCchHHHHHHHcC------------CCceEEEEeC---CHHHHHHHHH-----------HhhhcCCC----
Q 026688           62 GGNIIDASCGSGLFSRIFAKSG------------LFSLVVALDY---SENMLKQCYE-----------FVQQESNF----  111 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~------------~~~~v~~~D~---s~~~~~~a~~-----------~~~~~~~~----  111 (235)
                      .-+|||+|.|+|.+.....+..            ....++++|.   +.+.+..+-.           ....+...    
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            4689999999998766554431            1246899998   6666653332           22222110    


Q ss_pred             -------CCCCeeEEeccccc-CC-CC---CCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEEEeccCCC
Q 026688          112 -------PKENFLLVRADISR-LP-FA---SSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGP  175 (235)
Q Consensus       112 -------~~~~~~~~~~d~~~-~~-~~---~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~~~  175 (235)
                             ....+++..+|+.+ ++ +.   ...+|+|+....-. -.+|    ..+++.+.++++|||.+...  .    
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p-~~np~~w~~~~~~~l~~~~~~g~~~~t~--~----  219 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAP-AKNPDMWTQNLFNAMARLARPGGTLATF--T----  219 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCG-GGCGGGSCHHHHHHHHHHEEEEEEEEES--C----
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCC-cCChhhhhHHHHHHHHHHhCCCCEEEec--c----
Confidence                   01224456666644 22 11   36799999755332 2234    47899999999999987631  1    


Q ss_pred             cccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688          176 FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  220 (235)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  220 (235)
                                              ....+++.|.++||.+.+...
T Consensus       220 ------------------------~~~~vr~~L~~aGf~v~~~~~  240 (676)
T 3ps9_A          220 ------------------------SAGFVRRGLQDAGFTMQKRKG  240 (676)
T ss_dssp             ------------------------CCHHHHHHHHHHTCEEEEEEC
T ss_pred             ------------------------CcHHHHHHHHhCCeEEEeccc
Confidence                                    124678888999998766553

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.61  E-value=0.049  Score=43.58  Aligned_cols=105  Identities=15%  Similarity=0.142  Sum_probs=66.6

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C---C
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P---F  128 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~---~  128 (235)
                      ......++.+||-.|+|. |..+..+++..--..|+++|.++.-++.+++.=...      -+.....|..+ . .   .
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~------vi~~~~~~~~~~i~~~~~~  249 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA------TVDPSAGDVVEAIAGPVGL  249 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE------EECTTSSCHHHHHHSTTSS
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE------EECCCCcCHHHHHHhhhhc
Confidence            445666789999999976 777777877643238999999998888877631100      01100111111 0 0   1


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ..+.+|+|+-...      ....+..+.++|++||.+++....
T Consensus       250 ~~gg~Dvvid~~G------~~~~~~~~~~~l~~~G~vv~~G~~  286 (370)
T 4ej6_A          250 VPGGVDVVIECAG------VAETVKQSTRLAKAGGTVVILGVL  286 (370)
T ss_dssp             STTCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred             cCCCCCEEEECCC------CHHHHHHHHHHhccCCEEEEEecc
Confidence            2247999995322      135688899999999999886543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.51  E-value=0.029  Score=45.36  Aligned_cols=103  Identities=16%  Similarity=0.167  Sum_probs=67.3

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-----C-C-C
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----L-P-F  128 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-----~-~-~  128 (235)
                      ....++.+||-+|+|. |.++..+++..--..|+++|.+++-++.+++.    +      ...+...-.+     + . .
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----G------a~~i~~~~~~~~~~~v~~~t  250 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G------FEIADLSLDTPLHEQIAALL  250 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T------CEEEETTSSSCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----C------CcEEccCCcchHHHHHHHHh
Confidence            3556789999999876 78888888764223799999999888888652    1      1222111101     0 0 1


Q ss_pred             CCCceeEEEeccccc---------ccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          129 ASSSIDAVHAGAAIH---------CWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~---------~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ....+|+|+-...-.         |.+++...+..+.++|++||.+++..
T Consensus       251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            124699999654321         22344457889999999999998754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.40  E-value=0.026  Score=40.77  Aligned_cols=96  Identities=18%  Similarity=0.215  Sum_probs=60.0

Q ss_pred             hhcCCCCCCeEEEecC--CCchHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----
Q 026688           55 GYLKPVLGGNIIDASC--GSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----  127 (235)
                      +.....++++||..|+  |.|.....+++ .+  ++|+++|.+++.++.+++    .+   . .. .  .|..+..    
T Consensus        32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~----~g---~-~~-~--~d~~~~~~~~~   98 (198)
T 1pqw_A           32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSR----LG---V-EY-V--GDSRSVDFADE   98 (198)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHT----TC---C-SE-E--EETTCSTHHHH
T ss_pred             HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cC---C-CE-E--eeCCcHHHHHH
Confidence            3345566889999995  34655555554 34  489999999887766643    11   1 11 1  1222110    


Q ss_pred             ----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                          .....+|+++.+..       ...+..+.+.|+|+|.++....
T Consensus        99 ~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A           99 ILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             HHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred             HHHHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence                11246999996432       1457889999999999987654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.39  E-value=0.017  Score=45.80  Aligned_cols=94  Identities=14%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeE
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  135 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  135 (235)
                      ....++.+||-+|+|. |..+..+++.. .++|+++|.+++-++.+++.    +   . . .++ .+....  . ..+|+
T Consensus       172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G---a-~-~v~-~~~~~~--~-~~~D~  237 (348)
T 3two_A          172 SKVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSM----G---V-K-HFY-TDPKQC--K-EELDF  237 (348)
T ss_dssp             TTCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHT----T---C-S-EEE-SSGGGC--C-SCEEE
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhc----C---C-C-eec-CCHHHH--h-cCCCE
Confidence            4666789999999976 77777777764 45999999999888877652    1   1 1 122 333222  2 27999


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      |+-...-.      ..+..+.++|+|+|.+++...
T Consensus       238 vid~~g~~------~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          238 IISTIPTH------YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             EEECCCSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred             EEECCCcH------HHHHHHHHHHhcCCEEEEECC
Confidence            98533221      247788999999999998654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.37  E-value=0.051  Score=43.92  Aligned_cols=106  Identities=16%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC------C
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------P  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~  127 (235)
                      ......++.+||.+|+|. |..+..+++...-.+|+++|.++..++.+++.    +      ..++..+-.+.      .
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G------a~~i~~~~~~~~~~~~~~  248 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----G------FETIDLRNSAPLRDQIDQ  248 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----T------CEEEETTSSSCHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C------CcEEcCCCcchHHHHHHH
Confidence            334566789999999986 88888887764222899999999888877642    1      12222111111      0


Q ss_pred             -CCCCceeEEEeccccccc--------CChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 -FASSSIDAVHAGAAIHCW--------SSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~--------~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       .....+|+|+-...-...        .++...+..+.++|+++|++++...
T Consensus       249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          249 ILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             HHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             HhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence             112369999965432210        0123468889999999999886543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.32  E-value=0.029  Score=44.57  Aligned_cols=100  Identities=15%  Similarity=0.173  Sum_probs=65.9

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-----C
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~  127 (235)
                      ......++.+||-+|+|. |.++..+++.. .+ +|+++|.++.-++.+++.=.        . .++..+-.+.     .
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa--------~-~vi~~~~~~~~~~v~~  229 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALEYGA--------T-DIINYKNGDIVEQILK  229 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHHHTC--------C-EEECGGGSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC--------c-eEEcCCCcCHHHHHHH
Confidence            445667789999999976 77777887764 34 79999999988888876311        1 1211111110     0


Q ss_pred             -CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       .....+|+|+-...-      ...+..+.++|+|+|.++....
T Consensus       230 ~t~g~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          230 ATDGKGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             HTTTCCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             HcCCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEecc
Confidence             123469999943221      2457889999999999987653

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.32  E-value=0.14  Score=40.13  Aligned_cols=139  Identities=17%  Similarity=0.249  Sum_probs=84.0

Q ss_pred             CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCCceeEEEeccc
Q 026688           63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAA  141 (235)
Q Consensus        63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~~~  141 (235)
                      .+|||+-||.|.++.-+.+.+- ..+.++|+++...+..+.+..         ..+...|+.++.. .-...|+++...-
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~~---------~~~~~~DI~~i~~~~~~~~D~l~ggpP   70 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHS---------AKLIKGDISKISSDEFPKCDGIIGGPP   70 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHCC---------SEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHCC---------CCcccCChhhCCHhhCCcccEEEecCC
Confidence            4799999999999999988874 357799999988888776532         2467788887642 1246899986544


Q ss_pred             cccc---------CChH-HHHH---HHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          142 IHCW---------SSPS-TGVA---EISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       142 l~~~---------~~~~-~~l~---~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      +..+         .|+. .++.   ++.+.++|. + ++.+....    ..              .....-....+.+.|
T Consensus        71 CQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk-~-~~~ENV~g----l~--------------~~~~~~~~~~i~~~l  130 (331)
T 3ubt_Y           71 SQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI-F-FLAENVKG----MM--------------AQRHNKAVQEFIQEF  130 (331)
T ss_dssp             GGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS-E-EEEEECCG----GG--------------GCTTSHHHHHHHHHH
T ss_pred             CCCcCCCCCccCCCCchhHHHHHHHHHHhccCCe-E-EEeeeecc----cc--------------cccccchhhhhhhhh
Confidence            3332         2332 2333   445556784 3 33333221    00              000011235677788


Q ss_pred             HHcCCceeEEE---------eeCcEEEEEEec
Q 026688          209 RACGLVDFKCT---------RNRGFVMFTATK  231 (235)
Q Consensus       209 ~~~Gf~~~~~~---------~~~~~~~~~~~k  231 (235)
                      ++.|+.+....         .....+++++.|
T Consensus       131 ~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r  162 (331)
T 3ubt_Y          131 DNAGYDVHIILLNANDYGVAQDRKRVFYIGFR  162 (331)
T ss_dssp             HHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEE
T ss_pred             ccCCcEEEEEecccccCCCCcccceEEEEEEc
Confidence            89999764443         222346666665

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.27  E-value=0.042  Score=45.54  Aligned_cols=76  Identities=17%  Similarity=0.155  Sum_probs=53.9

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-------------
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-------------  128 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-------------  128 (235)
                      ..+++|+-||.|.++.-+.+.+. ..+.++|+++...+..+.+...     .+...+++.|+.++..             
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~-----~p~~~~~~~DI~~i~~~~~~~~~~~~~~~  161 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYC-----DPATHHFNEDIRDITLSHQEGVSDEAAAE  161 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCC-----CTTTCEEESCTHHHHCTTCTTSCHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhccc-----CCCcceeccchhhhhhccccccchhhHHh
Confidence            46899999999999999988764 3588999999888877776522     1234567788765421             


Q ss_pred             ----CCCceeEEEeccccc
Q 026688          129 ----ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ----~~~~~D~i~~~~~l~  143 (235)
                          ....+|+++...-+.
T Consensus       162 ~i~~~~~~~Dvl~gGpPCQ  180 (482)
T 3me5_A          162 HIRQHIPEHDVLLAGFPCQ  180 (482)
T ss_dssp             HHHHHSCCCSEEEEECCCC
T ss_pred             hhhhcCCCCCEEEecCCCc
Confidence                113589988654443

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.24  E-value=0.049  Score=43.43  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=65.7

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------  127 (235)
                      +.....++.+||-+|+|. |..+..+++.. .++|+++|.++.-++.+++.    +   . . .++..+..+..      
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G---a-~-~vi~~~~~~~~~~v~~~  252 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFAL----G---A-D-HGINRLEEDWVERVYAL  252 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH----T---C-S-EEEETTTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHc----C---C-C-EEEcCCcccHHHHHHHH
Confidence            445566789999999876 77777777754 45999999999888887653    1   1 1 12221111110      


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .....+|+|+-...       ...+..+.++|+|+|.+++....
T Consensus       253 ~~g~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          253 TGDRGADHILEIAG-------GAGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             HTTCCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEECCC
T ss_pred             hCCCCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEecC
Confidence            12347999985433       12367788999999999987543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.23  E-value=0.047  Score=43.38  Aligned_cols=99  Identities=18%  Similarity=0.232  Sum_probs=64.4

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc------cc-cC
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD------IS-RL  126 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d------~~-~~  126 (235)
                      .....++.+||-+|+|. |..+..+++.. .+ +|+++|.++.-++.+++.    +   . . .++..+      .. .+
T Consensus       166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l----G---a-~-~vi~~~~~~~~~~~~~i  235 (356)
T 1pl8_A          166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEI----G---A-D-LVLQISKESPQEIARKV  235 (356)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT----T---C-S-EEEECSSCCHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh----C---C-C-EEEcCcccccchHHHHH
Confidence            34566789999999976 77788887764 34 899999999888877642    1   1 1 122211      10 00


Q ss_pred             -CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          127 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       ......+|+|+-...     . ...+..+.++|+|+|.++....
T Consensus       236 ~~~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          236 EGQLGCKPEVTIECTG-----A-EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             HHHHTSCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred             HHHhCCCCCEEEECCC-----C-hHHHHHHHHHhcCCCEEEEEec
Confidence             000146899984322     1 2457888999999999987654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.18  E-value=0.031  Score=44.09  Aligned_cols=100  Identities=15%  Similarity=0.158  Sum_probs=65.5

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--C--C
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F--A  129 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~--~  129 (235)
                      ......++.+||-.|+|. |..+..+++.. .++|+++|.+++-++.+++.    +    .. .++..+-.+..  .  .
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~i~~~~~~~~~~~~~~  229 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRL----G----AE-VAVNARDTDPAAWLQKE  229 (340)
T ss_dssp             HTTTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----T----CS-EEEETTTSCHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHc----C----CC-EEEeCCCcCHHHHHHHh
Confidence            344566789999999976 88888888764 45999999999988887652    1    11 11111111110  0  1


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+.+|+|+....      ....++.+.++|+|+|.+++...
T Consensus       230 ~g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          230 IGGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             HSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeCC
Confidence            136888885322      23568889999999999987643

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.17  E-value=0.055  Score=43.86  Aligned_cols=99  Identities=14%  Similarity=0.050  Sum_probs=61.7

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-----C-CCC
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FAS  130 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~  130 (235)
                      ...++.+||-+|+|. |..+..+++...-..|+++|.++.-++.+++.=.        . .++..+-.+.     . ...
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa--------~-~vi~~~~~~~~~~i~~~t~g  280 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA--------D-HVIDPTKENFVEAVLDYTNG  280 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC--------S-EEECTTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC--------C-EEEcCCCCCHHHHHHHHhCC
Confidence            456688999999975 7777777776532389999999988888876311        1 1111111110     0 123


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhc----cCCcEEEEEEe
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVL----RPGGVFVGTTY  170 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L----~pgG~li~~~~  170 (235)
                      ..+|+|+-     ....+...+..+.+.|    +++|.+++...
T Consensus       281 ~g~D~vid-----~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          281 LGAKLFLE-----ATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCCSEEEE-----CSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCCEEEE-----CCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            46999984     3333333455555555    99999998654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.03  E-value=0.085  Score=41.45  Aligned_cols=97  Identities=19%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             cCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------C
Q 026688           57 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------F  128 (235)
Q Consensus        57 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------~  128 (235)
                      ....++.+||-.|+ | .|..+..+++.. .++|++++.+++-++.+++.    +    .. .++..+-.+..      .
T Consensus       144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~~~~~~~~~~~~~~~~~~  213 (334)
T 3qwb_A          144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEY----G----AE-YLINASKEDILRQVLKFT  213 (334)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CS-EEEETTTSCHHHHHHHHT
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C----Cc-EEEeCCCchHHHHHHHHh
Confidence            35567899999994 3 477777777653 45999999999888877652    1    11 12211111110      1


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ....+|+|+.+..-       ..+..+.++|+++|.++....
T Consensus       214 ~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          214 NGKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             TTSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence            23469999964432       347788899999999988643

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.02  E-value=0.026  Score=45.20  Aligned_cols=97  Identities=15%  Similarity=0.141  Sum_probs=62.5

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-CCCCCce
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PFASSSI  133 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~  133 (235)
                      ....++.+||-+|+|. |..+..+++.. .++|+++|.+++-++.+++. .      . . .++...-.+ . ... +.+
T Consensus       190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~l-G------a-~-~vi~~~~~~~~~~~~-~g~  258 (369)
T 1uuf_A          190 WQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL-G------A-D-EVVNSRNADEMAAHL-KSF  258 (369)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH-T------C-S-EEEETTCHHHHHTTT-TCE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C------C-c-EEeccccHHHHHHhh-cCC
Confidence            3556789999999975 77777777754 35899999999888888752 1      1 1 111111101 0 111 579


Q ss_pred             eEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      |+|+....-.      ..+..+.++|+|+|.++....
T Consensus       259 Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          259 DFILNTVAAP------HNLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             EEEEECCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred             CEEEECCCCH------HHHHHHHHHhccCCEEEEecc
Confidence            9998543321      236778899999999887543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.02  E-value=0.094  Score=41.73  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=67.8

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-----ccccc-C
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVR-----ADISR-L  126 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-----~d~~~-~  126 (235)
                      ......++.+||-+|+|. |..+..+++.. .++ |+++|.+++-++.+++. ..      .-+.+..     .|+.+ .
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~~------~~~~~~~~~~~~~~~~~~v  244 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-CP------EVVTHKVERLSAEESAKKI  244 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-CT------TCEEEECCSCCHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-ch------hcccccccccchHHHHHHH
Confidence            344566789999999976 77777887764 345 99999999999988875 31      1222221     11111 0


Q ss_pred             --CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 --PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 --~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                        ......+|+|+-...      ....+..+.++|+++|.+++....
T Consensus       245 ~~~t~g~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          245 VESFGGIEPAVALECTG------VESSIAAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             HHHTSSCCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECCCC
T ss_pred             HHHhCCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEccC
Confidence              012357999995322      224578899999999999986543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.01  E-value=0.13  Score=40.59  Aligned_cols=103  Identities=16%  Similarity=0.067  Sum_probs=64.4

Q ss_pred             HhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----
Q 026688           54 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  127 (235)
Q Consensus        54 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----  127 (235)
                      .......++.+||-.|+|. |.++..+++..-...++++|.++.-++.+++.    +     -..++...-.+.+     
T Consensus       153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----G-----a~~~i~~~~~~~~~~~~~  223 (346)
T 4a2c_A          153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----G-----AMQTFNSSEMSAPQMQSV  223 (346)
T ss_dssp             HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T-----CSEEEETTTSCHHHHHHH
T ss_pred             HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----C-----CeEEEeCCCCCHHHHHHh
Confidence            3445566789999999976 56666666654334678999999888887762    1     1112211111100     


Q ss_pred             -CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          128 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                       .....+|+|+....      ....++.+.+++++||.+++....
T Consensus       224 ~~~~~g~d~v~d~~G------~~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          224 LRELRFNQLILETAG------VPQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             HGGGCSSEEEEECSC------SHHHHHHHHHHCCTTCEEEECCCC
T ss_pred             hcccCCccccccccc------ccchhhhhhheecCCeEEEEEecc
Confidence             12245788774322      235678889999999999876543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.98  E-value=0.37  Score=41.96  Aligned_cols=156  Identities=10%  Similarity=0.150  Sum_probs=90.5

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCC------CceEEEEeCC-HHHHHHHHHHhhhcC-------------CC--------C
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGL------FSLVVALDYS-ENMLKQCYEFVQQES-------------NF--------P  112 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~------~~~v~~~D~s-~~~~~~a~~~~~~~~-------------~~--------~  112 (235)
                      +...|+-+|||.-.....+....+      ...+..+|++ |+.++.=++.+...+             ..        .
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  186 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT  186 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence            467899999999888887765533      1245555555 445554444443111             00        0


Q ss_pred             CCCeeEEecccccCC----------C-CCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccc
Q 026688          113 KENFLLVRADISRLP----------F-ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLI  179 (235)
Q Consensus       113 ~~~~~~~~~d~~~~~----------~-~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~  179 (235)
                      ..+..++..|+.+..          + .....-++++=.++.+++..  .++++.+.+.  |+|.+++.+..... ....
T Consensus       187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~-~~~d  263 (695)
T 2zwa_A          187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPK-GPFE  263 (695)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTT-CTTS
T ss_pred             CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCC-CCCC
Confidence            136788899997631          1 23344556666777777644  4777777754  66777665654321 1223


Q ss_pred             hhHHHHHHhHhhc----CCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          180 PFSRLLRQNMMQI----SGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       180 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      ++.......+...    .....+.+.++..+.|.++||..+...
T Consensus       264 ~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~  307 (695)
T 2zwa_A          264 PFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVG  307 (695)
T ss_dssp             HHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEE
T ss_pred             hHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCccee
Confidence            3433333333221    222345679999999999999865544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.96  E-value=0.058  Score=43.26  Aligned_cols=102  Identities=17%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             HhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-----ccc-C
Q 026688           54 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-----ISR-L  126 (235)
Q Consensus        54 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~  126 (235)
                      .......++.+||-+|+|. |..+..+++..--.+|+++|.++.-++.+++.    +   .  ..++...     +.+ .
T Consensus       186 ~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----G---a--~~vi~~~~~~~~~~~~i  256 (378)
T 3uko_A          186 WNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----G---V--NEFVNPKDHDKPIQEVI  256 (378)
T ss_dssp             HTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----T---C--CEEECGGGCSSCHHHHH
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C---C--cEEEccccCchhHHHHH
Confidence            3445566789999999975 77777777764223799999999888877642    1   1  1122111     110 0


Q ss_pred             -CCCCCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          127 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       127 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                       ....+.+|+|+-...     . ...+..+.++|++| |.+++...
T Consensus       257 ~~~~~gg~D~vid~~g-----~-~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          257 VDLTDGGVDYSFECIG-----N-VSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             HHHTTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HHhcCCCCCEEEECCC-----C-HHHHHHHHHHhhccCCEEEEEcc
Confidence             011237999984322     2 24578899999997 99987654

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.92  E-value=0.055  Score=41.88  Aligned_cols=72  Identities=11%  Similarity=0.069  Sum_probs=54.0

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---CC-CCceeE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FA-SSSIDA  135 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~-~~~~D~  135 (235)
                      ...+++|+-||.|.++..+.+.+.... +.++|+++...+..+.+.        +...+...|+.++.   ++ ...+|+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~--------~~~~~~~~DI~~i~~~~i~~~~~~Dl   86 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH--------QGKIMYVGDVRSVTQKHIQEWGPFDL   86 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT--------TTCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC--------CCCceeCCChHHccHHHhcccCCcCE
Confidence            367999999999999999998876444 699999999887776653        23456788887753   11 136899


Q ss_pred             EEecc
Q 026688          136 VHAGA  140 (235)
Q Consensus       136 i~~~~  140 (235)
                      ++...
T Consensus        87 l~ggp   91 (295)
T 2qrv_A           87 VIGGS   91 (295)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99754

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.90  E-value=0.075  Score=42.37  Aligned_cols=93  Identities=14%  Similarity=0.160  Sum_probs=61.0

Q ss_pred             CCCeEEEec-CCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec--cccc-C-CCCCCcee
Q 026688           61 LGGNIIDAS-CGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA--DISR-L-PFASSSID  134 (235)
Q Consensus        61 ~~~~vLdiG-~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~~~~D  134 (235)
                      ++.+||-.| +|. |..+..+++....++|+++|.+++-++.+++.    +   . . .++..  |..+ . ....+.+|
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----G---a-d-~vi~~~~~~~~~v~~~~~~g~D  241 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----G---A-H-HVIDHSKPLAAEVAALGLGAPA  241 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----T---C-S-EEECTTSCHHHHHHTTCSCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----C---C-C-EEEeCCCCHHHHHHHhcCCCce
Confidence            578899998 554 88888888862245999999999888887652    1   1 1 11111  1111 0 12235799


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      +|+....      ....+..+.++|+|+|.+++.
T Consensus       242 vvid~~g------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          242 FVFSTTH------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence            9884322      234678899999999999876

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.89  E-value=0.12  Score=40.92  Aligned_cols=99  Identities=16%  Similarity=0.127  Sum_probs=63.5

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc-ccC----C--
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRL----P--  127 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~----~--  127 (235)
                      .....++.+||-+|+|. |..+..+++.. .++|+++|.+++-++.+++.    +   . . .++..+- .+.    .  
T Consensus       163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G---a-~-~~~~~~~~~~~~~~i~~~  232 (352)
T 1e3j_A          163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC----G---A-D-VTLVVDPAKEEESSIIER  232 (352)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----T---C-S-EEEECCTTTSCHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----C---C-C-EEEcCcccccHHHHHHHH
Confidence            34566789999999875 77777777753 34799999999888887642    1   1 1 1221110 111    0  


Q ss_pred             CC---CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 FA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ..   ...+|+|+....      ....+..+.++|+|+|.++....
T Consensus       233 ~~~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          233 IRSAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             HHHHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             hccccCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence            11   246899984332      12457888999999999987654

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.88  E-value=0.062  Score=42.19  Aligned_cols=97  Identities=9%  Similarity=-0.041  Sum_probs=61.7

Q ss_pred             hhcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CC----
Q 026688           55 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP----  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~----  127 (235)
                      +.....++++||..|+  |.|..+..+++.. .++|+++|.+++.++.+++ +.      . ...   .|..+ ..    
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~-~g------~-~~~---~d~~~~~~~~~~  206 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ-IG------F-DAA---FNYKTVNSLEEA  206 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TT------C-SEE---EETTSCSCHHHH
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-cC------C-cEE---EecCCHHHHHHH
Confidence            4445667899999998  4466666555542 3489999999888877733 21      1 111   12221 00    


Q ss_pred             ---CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                         ...+.+|+++.+..-       ..+..+.++|+++|.+++...
T Consensus       207 ~~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          207 LKKASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             HHHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred             HHHHhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEEec
Confidence               112469999865442       347888899999999987543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.80  E-value=0.074  Score=41.63  Aligned_cols=99  Identities=12%  Similarity=0.011  Sum_probs=63.3

Q ss_pred             hcCCCCCCeEEEec-CC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC------C
Q 026688           56 YLKPVLGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------P  127 (235)
Q Consensus        56 ~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~  127 (235)
                      .....++.+||-.| +| .|..+..+++.. .++|++++.+++-++.+++.-        ... ++..+-.+.      .
T Consensus       135 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~G--------a~~-~~~~~~~~~~~~~~~~  204 (325)
T 3jyn_A          135 TYQVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKALG--------AWE-TIDYSHEDVAKRVLEL  204 (325)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHT--------CSE-EEETTTSCHHHHHHHH
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC--------CCE-EEeCCCccHHHHHHHH
Confidence            34556789999998 34 477777776653 349999999998888877531        111 111111111      0


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .....+|+|+.+..-       ..+..+.++|+++|.++.....
T Consensus       205 ~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~~  241 (325)
T 3jyn_A          205 TDGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGNA  241 (325)
T ss_dssp             TTTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECCCT
T ss_pred             hCCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEecC
Confidence            123479999854332       3477889999999999886543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.76  E-value=0.03  Score=43.70  Aligned_cols=93  Identities=9%  Similarity=0.012  Sum_probs=60.1

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCce
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  133 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (235)
                      ......++.+||-.|+|. |..+..+++.. .++|++++ +++-++.+++.=.         -.++ .|..++   .+.+
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~lGa---------~~v~-~d~~~v---~~g~  200 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKRGV---------RHLY-REPSQV---TQKY  200 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHHTE---------EEEE-SSGGGC---CSCE
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHcCC---------CEEE-cCHHHh---CCCc
Confidence            445566789999999964 77777777753 34999999 8888888766311         1122 242222   4679


Q ss_pred             eEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      |+|+-...-.       .+..+.++|+|+|.++...
T Consensus       201 Dvv~d~~g~~-------~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          201 FAIFDAVNSQ-------NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EEEECC--------------TTGGGEEEEEEEEEEC
T ss_pred             cEEEECCCch-------hHHHHHHHhcCCCEEEEEe
Confidence            9998432211       2356789999999998863

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.76  E-value=0.1  Score=41.71  Aligned_cols=101  Identities=14%  Similarity=0.094  Sum_probs=64.1

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-----ccc-C-
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-----ISR-L-  126 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~-  126 (235)
                      ......++.+||-+|+|. |..+..+++..--.+|+++|.+++-++.+++.    +   . . .++..+     +.+ . 
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G---a-~-~vi~~~~~~~~~~~~i~  255 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----G---A-T-ECLNPKDYDKPIYEVIC  255 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----T---C-S-EEECGGGCSSCHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C---C-c-EEEecccccchHHHHHH
Confidence            445566789999999875 77777777754222799999999888887642    1   1 1 111111     111 0 


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                      ....+.+|+|+-...-      ...+..+.++|+++ |.++....
T Consensus       256 ~~t~gg~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          256 EKTNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             HHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HHhCCCCCEEEECCCC------HHHHHHHHHHHhcCCCEEEEEcc
Confidence            0112379999843221      24578899999999 99987553

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.75  E-value=0.12  Score=40.74  Aligned_cols=103  Identities=14%  Similarity=0.109  Sum_probs=62.0

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C-CCCC
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P-FASS  131 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~  131 (235)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.+++-++.+++.-..      .-+.....|..+ . . ....
T Consensus       158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~------~~i~~~~~~~~~~v~~~t~g~  231 (348)
T 4eez_A          158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD------VTINSGDVNPVDEIKKITGGL  231 (348)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS------EEEEC-CCCHHHHHHHHTTSS
T ss_pred             ccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe------EEEeCCCCCHHHHhhhhcCCC
Confidence            34566789999999987 44555555544356999999999877777653211      011111122211 0 0 1223


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+|.++....      ....+....++++++|.+++...
T Consensus       232 g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          232 GVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             CEEEEEECCS------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CceEEEEecc------CcchhheeheeecCCceEEEEec
Confidence            5676664221      23567889999999999887643

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.70  E-value=0.14  Score=41.00  Aligned_cols=100  Identities=18%  Similarity=0.171  Sum_probs=64.0

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-----ccc-C
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-----ISR-L  126 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~  126 (235)
                      ......++.+||-+|+|. |..+..+++.. .+ +|+++|.++.-++.+++.    +   . . .++...     +.+ .
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~l----G---a-~-~vi~~~~~~~~~~~~~  255 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVF----G---A-T-DFVNPNDHSEPISQVL  255 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT----T---C-C-EEECGGGCSSCHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh----C---C-c-eEEeccccchhHHHHH
Confidence            344556789999999875 77777777764 34 799999999888887642    1   1 1 111111     110 0


Q ss_pred             -CCCCCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          127 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       127 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                       ....+.+|+|+-....      ...+..+.++|+++ |.+++...
T Consensus       256 ~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          256 SKMTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             HHHHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HHHhCCCCCEEEECCCC------HHHHHHHHHHhhcCCcEEEEEcC
Confidence             0112368999843221      24578899999999 99887543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.66  E-value=0.092  Score=42.13  Aligned_cols=100  Identities=22%  Similarity=0.255  Sum_probs=63.9

Q ss_pred             hcC-CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc------ccc-C
Q 026688           56 YLK-PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD------ISR-L  126 (235)
Q Consensus        56 ~~~-~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d------~~~-~  126 (235)
                      ... ..++.+||-+|+|. |..+..+++..--.+|+++|.+++-++.+++.    +   . . .++..+      +.+ .
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----G---a-~-~vi~~~~~~~~~~~~~v  259 (380)
T 1vj0_A          189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----G---A-D-LTLNRRETSVEERRKAI  259 (380)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----T---C-S-EEEETTTSCHHHHHHHH
T ss_pred             hcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----C---C-c-EEEeccccCcchHHHHH
Confidence            345 56789999999775 77777777764214999999999888887642    1   1 1 122211      111 1


Q ss_pred             -C-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          127 -P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 -~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       . .....+|+|+-....      ...+..+.++|+++|.++....
T Consensus       260 ~~~~~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          260 MDITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             HHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             HHHhCCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence             0 112369999854321      2357888999999999887643

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.66  E-value=0.14  Score=40.91  Aligned_cols=100  Identities=13%  Similarity=0.110  Sum_probs=64.1

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-----ccc-C
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-----ISR-L  126 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~  126 (235)
                      ......++.+||-+|+|. |..+..+++.. .+ +|+++|.+++-++.+++.    +   . . .++..+     +.+ .
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l----G---a-~-~vi~~~~~~~~~~~~v  258 (376)
T 1e3i_A          189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKAL----G---A-T-DCLNPRELDKPVQDVI  258 (376)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT----T---C-S-EEECGGGCSSCHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh----C---C-c-EEEccccccchHHHHH
Confidence            344566789999999875 77777777764 34 799999999888877642    1   1 1 111111     110 0


Q ss_pred             -CCCCCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          127 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       127 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                       ....+.+|+|+-...     . ...+..+.++|+++ |.+++...
T Consensus       259 ~~~~~~g~Dvvid~~G-----~-~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          259 TELTAGGVDYSLDCAG-----T-AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             HHHHTSCBSEEEESSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HHHhCCCccEEEECCC-----C-HHHHHHHHHHhhcCCCEEEEECC
Confidence             011236899984322     1 24578899999999 99987544

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.65  E-value=0.15  Score=40.71  Aligned_cols=100  Identities=15%  Similarity=0.127  Sum_probs=63.8

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-----ccc-C
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-----ISR-L  126 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~  126 (235)
                      ......++.+||-+|+|. |..+..+++.. .+ +|+++|.+++-++.+++.    +   . . .++..+     +.+ .
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~l----G---a-~-~vi~~~~~~~~~~~~~  254 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEV----G---A-T-ECVNPQDYKKPIQEVL  254 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT----T---C-S-EEECGGGCSSCHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh----C---C-c-eEecccccchhHHHHH
Confidence            344556789999999875 77777777764 34 799999999888887642    1   1 1 111111     110 0


Q ss_pred             -CCCCCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          127 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       127 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                       ....+.+|+|+-...     . ...+..+.++|+++ |.+++...
T Consensus       255 ~~~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          255 TEMSNGGVDFSFEVIG-----R-LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             HHHTTSCBSEEEECSC-----C-HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             HHHhCCCCcEEEECCC-----C-HHHHHHHHHHhhcCCcEEEEecc
Confidence             011236899984322     1 24578899999999 99887543

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.59  E-value=0.075  Score=41.79  Aligned_cols=100  Identities=11%  Similarity=-0.016  Sum_probs=63.8

Q ss_pred             hhcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-----C
Q 026688           55 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~  127 (235)
                      +.....++.+||-.|+  |.|..+..+++.. .++|++++.+++-++.+.+.+.      . . .++...-.+.     .
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g------~-~-~~~~~~~~~~~~~~~~  213 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELG------F-D-GAIDYKNEDLAAGLKR  213 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC------C-S-EEEETTTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcC------C-C-EEEECCCHHHHHHHHH
Confidence            5556677899999998  3477777766653 3499999999987777733221      1 1 1111111110     0


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ...+.+|+++.+..-       ..+..+.++|+++|.+++...
T Consensus       214 ~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          214 ECPKGIDVFFDNVGG-------EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             HCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred             hcCCCceEEEECCCc-------chHHHHHHHHhhCCEEEEEee
Confidence            112469999854331       358889999999999987644

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.57  E-value=0.046  Score=43.11  Aligned_cols=100  Identities=15%  Similarity=0.180  Sum_probs=62.3

Q ss_pred             HhhcCCCCCCeEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-----
Q 026688           54 KGYLKPVLGGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----  126 (235)
Q Consensus        54 ~~~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----  126 (235)
                      .+.....++.+||-.|+|.  |..+..+++.. .++|+++|.++.-++.+++.-        ... ++...-.+.     
T Consensus       137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lg--------a~~-~~~~~~~~~~~~~~  206 (340)
T 3gms_A          137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRLG--------AAY-VIDTSTAPLYETVM  206 (340)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHT--------CSE-EEETTTSCHHHHHH
T ss_pred             HHhcccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhCC--------CcE-EEeCCcccHHHHHH
Confidence            3445667789999999874  66666666643 349999999988888877631        111 111111111     


Q ss_pred             C-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          127 P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 ~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      . .....+|+++.+..-.       ......++|+++|.++....
T Consensus       207 ~~~~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          207 ELTNGIGADAAIDSIGGP-------DGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             HHTTTSCEEEEEESSCHH-------HHHHHHHTEEEEEEEEECCC
T ss_pred             HHhCCCCCcEEEECCCCh-------hHHHHHHHhcCCCEEEEEee
Confidence            0 1234799998543322       23345589999999988654

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.54  E-value=0.091  Score=41.48  Aligned_cols=99  Identities=13%  Similarity=0.126  Sum_probs=64.8

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc--ccc-C-C-CCCC
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD--ISR-L-P-FASS  131 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d--~~~-~-~-~~~~  131 (235)
                      ...++.+||-+|+|. |..+..+++.....+|+++|.+++-++.+++.    +   . . .++..+  ..+ . . ....
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----G---a-~-~~i~~~~~~~~~v~~~t~g~  238 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----G---A-D-AAVKSGAGAADAIRELTGGQ  238 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----T---C-S-EEEECSTTHHHHHHHHHGGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C---C-C-EEEcCCCcHHHHHHHHhCCC
Confidence            455689999999976 77777777764245999999999988888652    1   1 1 122111  111 0 0 1123


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .+|+|+-...     . ...+..+.++|+++|.+++....
T Consensus       239 g~d~v~d~~G-----~-~~~~~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          239 GATAVFDFVG-----A-QSTIDTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             CEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCeEEEECCC-----C-HHHHHHHHHHHhcCCEEEEECCC
Confidence            7999984322     1 24688999999999999886543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=95.53  E-value=0.14  Score=41.06  Aligned_cols=77  Identities=9%  Similarity=0.034  Sum_probs=48.1

Q ss_pred             CCCeEEEecCCCchHHHHHHHcC-------CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCce
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSG-------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  133 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~-------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (235)
                      .+-.|+|+|+|.|.++..+++..       ...+++.+|+|+...+.=++.+...     .++.+. .++.++|  .. .
T Consensus        80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~-----~~v~W~-~~l~~lp--~~-~  150 (387)
T 1zkd_A           80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVP--EG-P  150 (387)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSC--CS-S
T ss_pred             CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-----CCeEEe-CChhhcC--CC-C
Confidence            34679999999999988876541       2348999999998777555554331     134432 2233333  12 3


Q ss_pred             eEEEecccccccC
Q 026688          134 DAVHAGAAIHCWS  146 (235)
Q Consensus       134 D~i~~~~~l~~~~  146 (235)
                      -+|+++.++..++
T Consensus       151 ~~viANE~fDAlP  163 (387)
T 1zkd_A          151 AVILANEYFDVLP  163 (387)
T ss_dssp             EEEEEESSGGGSC
T ss_pred             eEEEeccccccCc
Confidence            4666666665544

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.52  E-value=0.026  Score=43.77  Aligned_cols=57  Identities=23%  Similarity=0.218  Sum_probs=40.3

Q ss_pred             CCeeEEeccccc-C-CCCCCceeEEEecccccccC--------------------ChHHHHHHHHHhccCCcEEEEEEe
Q 026688          114 ENFLLVRADISR-L-PFASSSIDAVHAGAAIHCWS--------------------SPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       114 ~~~~~~~~d~~~-~-~~~~~~~D~i~~~~~l~~~~--------------------~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .++.++++|..+ + .++.++||+|+++--.....                    ....+++++.++|+|||.+++...
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            357899999976 2 24568999999974442111                    013467899999999999988764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.46  E-value=0.12  Score=40.84  Aligned_cols=98  Identities=12%  Similarity=0.008  Sum_probs=63.1

Q ss_pred             hhcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc---C---
Q 026688           55 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---L---  126 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~---  126 (235)
                      +.....++.+||..|+  |.|..+..+++.. .++|++++.+++.++.+++.+   +   . .. .+  |..+   .   
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~---g---~-~~-~~--d~~~~~~~~~~  217 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKF---G---F-DD-AF--NYKEESDLTAA  217 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTS---C---C-SE-EE--ETTSCSCSHHH
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc---C---C-ce-EE--ecCCHHHHHHH
Confidence            4455667899999997  3477776666653 348999999988877776422   1   1 11 11  2211   1   


Q ss_pred             --CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          127 --PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 --~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                        ....+.+|+++.+...       ..+..+.++|+++|.+++...
T Consensus       218 ~~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          218 LKRCFPNGIDIYFENVGG-------KMLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             HHHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred             HHHHhCCCCcEEEECCCH-------HHHHHHHHHHhcCCEEEEEcc
Confidence              0112469999854331       357889999999999987643

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.41  E-value=0.2  Score=39.88  Aligned_cols=99  Identities=11%  Similarity=0.083  Sum_probs=63.6

Q ss_pred             hhcCCCCCCeEEEec-C-CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-----C
Q 026688           55 GYLKPVLGGNIIDAS-C-GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG-~-G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~  127 (235)
                      ......++.+||-.| + |.|..+..+++.. .++|++++.+++-++.+++.    +   . . .++..+-.+.     .
T Consensus       157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~----G---a-~-~~~~~~~~~~~~~~~~  226 (362)
T 2c0c_A          157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSL----G---C-D-RPINYKTEPVGTVLKQ  226 (362)
T ss_dssp             HHTCCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T---C-S-EEEETTTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHc----C---C-c-EEEecCChhHHHHHHH
Confidence            334556789999999 3 4587777777754 35899999998888777652    1   1 1 1111111110     0


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .....+|+|+....     .  ..++.+.++|+++|.++....
T Consensus       227 ~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          227 EYPEGVDVVYESVG-----G--AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             HCTTCEEEEEECSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred             hcCCCCCEEEECCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence            11246999985433     1  467889999999999887654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.41  E-value=0.13  Score=41.16  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=63.9

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-----ccc-C
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-----ISR-L  126 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~  126 (235)
                      ......++.+||-+|+|. |..+..+++.. .+ .|+++|.++.-++.+++. .      . . .++...     +.+ .
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~l-G------a-~-~vi~~~~~~~~~~~~v  253 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEF-G------A-T-ECINPQDFSKPIQEVL  253 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHH-T------C-S-EEECGGGCSSCHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc-C------C-c-eEeccccccccHHHHH
Confidence            344566789999999875 77777777754 34 799999999888888653 1      1 1 111111     110 0


Q ss_pred             -CCCCCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          127 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       127 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                       ....+.+|+|+....-      ...+..+.++|+++ |.+++...
T Consensus       254 ~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          254 IEMTDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             HHHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HHHhCCCCCEEEECCCc------HHHHHHHHHhhccCCcEEEEEec
Confidence             0112368999843221      24578899999999 99987653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.36  E-value=0.096  Score=41.36  Aligned_cols=98  Identities=12%  Similarity=0.093  Sum_probs=62.9

Q ss_pred             hhcCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc--ccc-C-C-
Q 026688           55 GYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD--ISR-L-P-  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d--~~~-~-~-  127 (235)
                      ......++.+||-.|+ | .|..+..+++.. .++|++++.+++-++.+++.    +   . . .+...+  +.+ . . 
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g---a-~-~v~~~~~~~~~~v~~~  222 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSV----G---A-D-IVLPLEEGWAKAVREA  222 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH----T---C-S-EEEESSTTHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C---C-c-EEecCchhHHHHHHHH
Confidence            4445667899999997 3 477777777754 35999999999888877763    1   1 1 122222  111 0 0 


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .....+|+|+....-.       .+..+.++|+++|.+++..
T Consensus       223 ~~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          223 TGGAGVDMVVDPIGGP-------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             TTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred             hCCCCceEEEECCchh-------HHHHHHHhhcCCCEEEEEE
Confidence            1224799999644321       3678889999999998764

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=95.30  E-value=0.62  Score=42.19  Aligned_cols=77  Identities=13%  Similarity=0.156  Sum_probs=52.9

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--------------
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--------------  126 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--------------  126 (235)
                      ...+++|+-||.|.++.-+.+.+....+.++|+++..++..+.+.        +...++..|+.++              
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~--------p~~~~~~~DI~~l~~~~~~~di~~~~~  610 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN--------PGSTVFTEDCNILLKLVMAGETTNSRG  610 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC--------TTSEEECSCHHHHHHHHHHTCSBCTTC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC--------CCCccccccHHHHhhhccchhhhhhhh
Confidence            356899999999999999988874236889999999888777663        2344555554221              


Q ss_pred             -CCC-CCceeEEEeccccccc
Q 026688          127 -PFA-SSSIDAVHAGAAIHCW  145 (235)
Q Consensus       127 -~~~-~~~~D~i~~~~~l~~~  145 (235)
                       .++ .+.+|+|+...-...+
T Consensus       611 ~~lp~~~~vDll~GGpPCQ~F  631 (1002)
T 3swr_A          611 QRLPQKGDVEMLCGGPPCQGF  631 (1002)
T ss_dssp             CBCCCTTTCSEEEECCCCTTC
T ss_pred             hhcccCCCeeEEEEcCCCcch
Confidence             111 3468999976544333

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.16  E-value=0.21  Score=39.57  Aligned_cols=95  Identities=14%  Similarity=0.086  Sum_probs=60.5

Q ss_pred             hcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------
Q 026688           56 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  127 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------  127 (235)
                      .....++.+||-.|+  |.|..+..+++.. .++|++++.+++-++.+++.    +   . . .+.  |..+..      
T Consensus       165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g---a-~-~~~--d~~~~~~~~~~~  232 (351)
T 1yb5_A          165 SACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN----G---A-H-EVF--NHREVNYIDKIK  232 (351)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T---C-S-EEE--ETTSTTHHHHHH
T ss_pred             hhCCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHc----C---C-C-EEE--eCCCchHHHHHH
Confidence            345567899999997  3466666666543 35899999999877766542    1   1 1 111  221111      


Q ss_pred             --CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          128 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       128 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                        .....+|+++.+..-       ..+..+.++|+++|.++...
T Consensus       233 ~~~~~~~~D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          233 KYVGEKGIDIIIEMLAN-------VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             HHHCTTCEEEEEESCHH-------HHHHHHHHHEEEEEEEEECC
T ss_pred             HHcCCCCcEEEEECCCh-------HHHHHHHHhccCCCEEEEEe
Confidence              112469999865432       34678899999999998765

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.01  E-value=0.17  Score=39.97  Aligned_cols=98  Identities=11%  Similarity=0.076  Sum_probs=62.8

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-----C-
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-  127 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~-  127 (235)
                      .... ++.+||-+|+|. |..+..+++.. .+ +|+++|.+++-++.+++.-       . . .++..+-.+.     . 
T Consensus       163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~G-------a-~-~~~~~~~~~~~~~v~~~  231 (348)
T 2d8a_A          163 AGPI-SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVG-------A-D-YVINPFEEDVVKEVMDI  231 (348)
T ss_dssp             TSCC-TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHHT-------C-S-EEECTTTSCHHHHHHHH
T ss_pred             hcCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhC-------C-C-EEECCCCcCHHHHHHHH
Confidence            3445 788999999964 77777777764 34 8999999998888776431       1 1 1111111110     0 


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .....+|+|+.....      ...+..+.+.|+++|.++....
T Consensus       232 ~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          232 TDGNGVDVFLEFSGA------PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             TTTSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             cCCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEcc
Confidence            112469999854331      2457888999999999887654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.00  E-value=0.14  Score=40.35  Aligned_cols=95  Identities=20%  Similarity=0.170  Sum_probs=62.0

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC------C
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA------S  130 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~------~  130 (235)
                      ...++.+||-+|+|. |..+..+++.. .++|+++|.++.-++.+++ +   +   . . .+  .|..+..+.      .
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~-l---G---a-~-~~--~d~~~~~~~~~~~~~~  228 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE-L---G---A-D-LV--VNPLKEDAAKFMKEKV  228 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH-T---T---C-S-EE--ECTTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-C---C---C-C-EE--ecCCCccHHHHHHHHh
Confidence            556689999999864 77777776653 3599999999988887764 1   1   1 1 11  122211100      0


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +.+|+|+.....      ...++.+.++|+++|.++....
T Consensus       229 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          229 GGVHAAVVTAVS------KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             SSEEEEEESSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEecc
Confidence            468999854321      2457888999999999887543

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.99  E-value=0.095  Score=41.44  Aligned_cols=100  Identities=12%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             cCCCCCCeEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc---C-CCCC
Q 026688           57 LKPVLGGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---L-PFAS  130 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~-~~~~  130 (235)
                      ....++.+||..|+|.  |..+..+++....++|+++|.+++.++.+++. .      . ...+...+...   . ....
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~-g------~-~~~~~~~~~~~~~~~~~~~~  237 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-G------A-DYVINASMQDPLAEIRRITE  237 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-T------C-SEEEETTTSCHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-C------C-CEEecCCCccHHHHHHHHhc
Confidence            4556789999999984  55555555542124899999999888877542 1      1 11111111100   0 1111


Q ss_pred             -CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          131 -SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       131 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       +.+|+++....-      ...++.+.++|+|+|.++....
T Consensus       238 ~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          238 SKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             TSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEECCS
T ss_pred             CCCceEEEECCCC------HHHHHHHHHHHhcCCEEEEECC
Confidence             479999854332      2457788899999999887543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.98  E-value=0.14  Score=39.97  Aligned_cols=96  Identities=9%  Similarity=0.038  Sum_probs=61.0

Q ss_pred             hcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------
Q 026688           56 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  127 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------  127 (235)
                      .....++.+||-.|+  |.|.....+++.. .++|+++|.+++.++.+++.    +   . .. ..  |..+..      
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~----g---~-~~-~~--~~~~~~~~~~~~  202 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA----G---A-WQ-VI--NYREEDLVERLK  202 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH----T---C-SE-EE--ETTTSCHHHHHH
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C---C-CE-EE--ECCCccHHHHHH
Confidence            345566899999994  3466666555542 24899999998888777652    1   1 11 11  221110      


Q ss_pred             --CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                        .....+|+++.+..       ...++.+.++|+++|.++....
T Consensus       203 ~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          203 EITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             HHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred             HHhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence              11246999986544       2447888999999999887654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.97  E-value=0.19  Score=39.55  Aligned_cols=94  Identities=15%  Similarity=0.089  Sum_probs=62.1

Q ss_pred             CCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------
Q 026688           58 KPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------  127 (235)
Q Consensus        58 ~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------  127 (235)
                      ...++.+||..|+  |.|..+..+++.. .++|+++|.+++.++.+++.    +   . . .++  |..+..        
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~----g---a-~-~~~--d~~~~~~~~~~~~~  230 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKAL----G---A-D-ETV--NYTHPDWPKEVRRL  230 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T---C-S-EEE--ETTSTTHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----C---C-C-EEE--cCCcccHHHHHHHH
Confidence            4556899999998  4577777777653 34999999999888887642    1   1 1 111  221110        


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .....+|+++.... .      ..+..+.++|+++|.++....
T Consensus       231 ~~~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          231 TGGKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             TTTTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred             hCCCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence            11247999996544 2      246788899999999887543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.96  E-value=0.037  Score=44.48  Aligned_cols=101  Identities=17%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ++.+|+-+|+|. |......++.. .++|+++|.++.-++.+++.+..       .+.....+..++...-...|+|+..
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g~-------~~~~~~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFCG-------RIHTRYSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTT-------SSEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcCC-------eeEeccCCHHHHHHHHcCCCEEEEC
Confidence            478999999975 55444444433 34899999999887777654321       1211111111111001357999874


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ........+.-+.++..+.++|||.++-..
T Consensus       239 ~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          239 VLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            322211222223456778899999887654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.74  E-value=0.43  Score=37.18  Aligned_cols=91  Identities=14%  Similarity=0.189  Sum_probs=57.4

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ..+|.-||+|. | .++..+.+.+...+|+++|.+++.++.+.+.    +     -+.-...|..+.  .....|+|+..
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G-----~~~~~~~~~~~~--~~~~aDvVila  101 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G-----IIDEGTTSIAKV--EDFSPDFVMLS  101 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T-----SCSEEESCTTGG--GGGCCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----C-----CcchhcCCHHHH--hhccCCEEEEe
Confidence            46899999986 4 4566666666544899999999887776542    1     111122333320  12457999865


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      -....   ...+++++...++|+..++
T Consensus       102 vp~~~---~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A          102 SPVRT---FREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             SCGGG---HHHHHHHHHHHSCTTCEEE
T ss_pred             CCHHH---HHHHHHHHhhccCCCcEEE
Confidence            43321   2467888888899876554

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.73  E-value=0.2  Score=39.63  Aligned_cols=99  Identities=10%  Similarity=-0.007  Sum_probs=62.7

Q ss_pred             hhcCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----
Q 026688           55 GYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----  127 (235)
                      +.....++.+||-.|+ | .|..+..+++.. .++|+++|.++.-++.+++.-       . .. ++..+-.+..     
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lG-------a-~~-~~~~~~~~~~~~~~~  230 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERLG-------A-KR-GINYRSEDFAAVIKA  230 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHT-------C-SE-EEETTTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcC-------C-CE-EEeCCchHHHHHHHH
Confidence            3445667899999953 3 477777777653 358999999998888877631       1 11 1111111100     


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .....+|+++.+..-       ..+..+.+.|+++|.++....
T Consensus       231 ~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          231 ETGQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             HHSSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred             HhCCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence            113569999964432       246788899999999887653

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.72  E-value=0.058  Score=42.94  Aligned_cols=98  Identities=10%  Similarity=0.104  Sum_probs=60.9

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc-cC--CCCCCc
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RL--PFASSS  132 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~--~~~~~~  132 (235)
                      ....++.+||-+|+|. |..+..+++.. .++|+++|.++.-++.+++. .      . . .++..+-. +.  ... +.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~l-G------a-~-~v~~~~~~~~~~~~~~-~~  243 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM-G------A-D-HYIATLEEGDWGEKYF-DT  243 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH-T------C-S-EEEEGGGTSCHHHHSC-SC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc-C------C-C-EEEcCcCchHHHHHhh-cC
Confidence            4556789999999865 77777777653 34899999998888887652 1      1 1 11211111 10  111 47


Q ss_pred             eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +|+|+......    ....+..+.++|+++|.++...
T Consensus       244 ~D~vid~~g~~----~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          244 FDLIVVCASSL----TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             EEEEEECCSCS----TTCCTTTGGGGEEEEEEEEECC
T ss_pred             CCEEEECCCCC----cHHHHHHHHHHhcCCCEEEEec
Confidence            99999644320    0122456788999999988754

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.69  E-value=0.39  Score=37.87  Aligned_cols=92  Identities=11%  Similarity=0.151  Sum_probs=59.0

Q ss_pred             CCCeEEEe-cCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec--cccc-C-CCCCCcee
Q 026688           61 LGGNIIDA-SCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA--DISR-L-PFASSSID  134 (235)
Q Consensus        61 ~~~~vLdi-G~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~~~~D  134 (235)
                      ++.+||-. |+|. |..+..+++.. .++|++++.+++-++.+++.-       . . .++..  |..+ . ......+|
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lG-------a-~-~vi~~~~~~~~~~~~~~~~g~D  219 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMG-------A-D-IVLNHKESLLNQFKTQGIELVD  219 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHT-------C-S-EEECTTSCHHHHHHHHTCCCEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcC-------C-c-EEEECCccHHHHHHHhCCCCcc
Confidence            68899999 4554 77777777753 359999999998888887631       1 1 11111  1110 0 11235699


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      +|+....      ....+..+.++|+++|.++..
T Consensus       220 vv~d~~g------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          220 YVFCTFN------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred             EEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence            9985322      235578899999999999754

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.69  E-value=0.19  Score=39.18  Aligned_cols=91  Identities=13%  Similarity=0.123  Sum_probs=59.0

Q ss_pred             eEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEEEecc
Q 026688           64 NIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAGA  140 (235)
Q Consensus        64 ~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~~  140 (235)
                      +||-.|+ | .|..+..+++.. .++|++++.+++-++.+++.    +   . ...+-..+.... ....+.+|+++-..
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~l----G---a-~~vi~~~~~~~~~~~~~~~~d~v~d~~  219 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSL----G---A-NRILSRDEFAESRPLEKQLWAGAIDTV  219 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH----T---C-SEEEEGGGSSCCCSSCCCCEEEEEESS
T ss_pred             eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C---C-CEEEecCCHHHHHhhcCCCccEEEECC
Confidence            4999997 4 478888887764 45999999999888888763    1   1 111111111111 12235789887432


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                           .  ...+..+.++|+|+|.++....
T Consensus       220 -----g--~~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          220 -----G--DKVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             -----C--HHHHHHHHHTEEEEEEEEECCC
T ss_pred             -----C--cHHHHHHHHHHhcCCEEEEEec
Confidence                 1  1368899999999999987643

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.66  E-value=0.14  Score=40.51  Aligned_cols=96  Identities=15%  Similarity=0.139  Sum_probs=61.1

Q ss_pred             cCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc---cCC----
Q 026688           57 LKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS---RLP----  127 (235)
Q Consensus        57 ~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~---~~~----  127 (235)
                      ....++.+||..|+  |.|..+..+++.. .++|+++|.+++.++.+++.    +   . . .+  .|..   +..    
T Consensus       165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~----g---~-~-~~--~d~~~~~~~~~~~~  232 (347)
T 2hcy_A          165 ANLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSI----G---G-E-VF--IDFTKEKDIVGAVL  232 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHT----T---C-C-EE--EETTTCSCHHHHHH
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHc----C---C-c-eE--EecCccHhHHHHHH
Confidence            35566899999998  3566666666543 34999999988877766541    1   1 1 11  1322   110    


Q ss_pred             -CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       ...+.+|+++.+...      ...++.+.+.|+++|.++....
T Consensus       233 ~~~~~~~D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          233 KATDGGAHGVINVSVS------EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HHHTSCEEEEEECSSC------HHHHHHHTTSEEEEEEEEECCC
T ss_pred             HHhCCCCCEEEECCCc------HHHHHHHHHHHhcCCEEEEEeC
Confidence             011268999864432      2467889999999999887544

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.63  E-value=0.29  Score=38.31  Aligned_cols=96  Identities=15%  Similarity=0.127  Sum_probs=61.8

Q ss_pred             hcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------
Q 026688           56 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  127 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------  127 (235)
                      .....++.+||-.|+  |.|..+..+++.. .++|+++|.+++.++.+++.    +   . .. ..  |..+..      
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~----g---~-~~-~~--d~~~~~~~~~i~  207 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKL----G---C-HH-TI--NYSTQDFAEVVR  207 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T---C-SE-EE--ETTTSCHHHHHH
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C---C-CE-EE--ECCCHHHHHHHH
Confidence            345567899999995  4577666666643 34999999999887777652    1   1 11 11  221111      


Q ss_pred             --CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                        .....+|+++.+..-       ..++.+.++|+++|.++....
T Consensus       208 ~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          208 EITGGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             HHHTTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred             HHhCCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence              112469999865432       347788999999999887653

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.62  E-value=0.28  Score=38.87  Aligned_cols=96  Identities=8%  Similarity=-0.010  Sum_probs=60.7

Q ss_pred             hcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------
Q 026688           56 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  127 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------  127 (235)
                      .....++.+||-.|+  |.|..+..+++.. .++|+++|.+++-++.+++. .      . .. ..  |..+..      
T Consensus       157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-g------~-~~-~~--~~~~~~~~~~~~  224 (354)
T 2j8z_A          157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKL-G------A-AA-GF--NYKKEDFSEATL  224 (354)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH-T------C-SE-EE--ETTTSCHHHHHH
T ss_pred             hcCCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-C------C-cE-EE--ecCChHHHHHHH
Confidence            345566889999984  3466666666543 35899999999888877542 1      1 11 11  221110      


Q ss_pred             --CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                        .....+|+++.+..-       ..+..+.++|+++|.++....
T Consensus       225 ~~~~~~~~d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          225 KFTKGAGVNLILDCIGG-------SYWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             HHTTTSCEEEEEESSCG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred             HHhcCCCceEEEECCCc-------hHHHHHHHhccCCCEEEEEec
Confidence              112469999865432       136778899999999987654

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.55  E-value=0.045  Score=43.57  Aligned_cols=100  Identities=14%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             cCCC-CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688           57 LKPV-LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  134 (235)
Q Consensus        57 ~~~~-~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  134 (235)
                      .... ++.+||-+|+|. |..+..+++.. .++|+++|.+++-++.+++.+.      ...+ +...+........+.+|
T Consensus       175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lG------a~~v-i~~~~~~~~~~~~~g~D  246 (357)
T 2cf5_A          175 FGLKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLG------ADDY-VIGSDQAKMSELADSLD  246 (357)
T ss_dssp             TSTTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSC------CSCE-EETTCHHHHHHSTTTEE
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcC------Ccee-eccccHHHHHHhcCCCC
Confidence            3445 688999999875 66666676653 3489999999877776653221      1111 11111111100124699


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +|+-...-.      ..+..+.++|+|+|.++....
T Consensus       247 ~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          247 YVIDTVPVH------HALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             EEEECCCSC------CCSHHHHTTEEEEEEEEECSC
T ss_pred             EEEECCCCh------HHHHHHHHHhccCCEEEEeCC
Confidence            998543321      125667889999999987543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.54  E-value=0.081  Score=42.22  Aligned_cols=99  Identities=15%  Similarity=0.128  Sum_probs=59.6

Q ss_pred             cCCC-CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-ccccCCCCCCce
Q 026688           57 LKPV-LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSI  133 (235)
Q Consensus        57 ~~~~-~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~  133 (235)
                      .... ++.+||-+|+|. |..+..+++.. .++|++++.+++-++.+++.+.      . . .++.. +........+.+
T Consensus       182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lG------a-~-~v~~~~~~~~~~~~~~~~  252 (366)
T 1yqd_A          182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFG------A-D-SFLVSRDQEQMQAAAGTL  252 (366)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSC------C-S-EEEETTCHHHHHHTTTCE
T ss_pred             cCcCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcC------C-c-eEEeccCHHHHHHhhCCC
Confidence            3444 688999999865 66666666653 3589999999887777654321      1 1 11111 111111011469


Q ss_pred             eEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      |+|+......      ..++.+.++|+++|.++....
T Consensus       253 D~vid~~g~~------~~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          253 DGIIDTVSAV------HPLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             EEEEECCSSC------CCSHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCcH------HHHHHHHHHHhcCCEEEEEcc
Confidence            9998543321      124567788999999887543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.52  E-value=0.18  Score=39.97  Aligned_cols=89  Identities=16%  Similarity=0.162  Sum_probs=57.6

Q ss_pred             CeEEEecCCC-chHH-HHHH-HcCCCce-EEEEeCCHH---HHHHHHHHhhhcCCCCCCCeeEEecccccCCCC-----C
Q 026688           63 GNIIDASCGS-GLFS-RIFA-KSGLFSL-VVALDYSEN---MLKQCYEFVQQESNFPKENFLLVRADISRLPFA-----S  130 (235)
Q Consensus        63 ~~vLdiG~G~-G~~~-~~l~-~~~~~~~-v~~~D~s~~---~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~  130 (235)
                      .+||-+|+|. |.++ ..++ +.. .++ |+++|.+++   -++.+++.    +      ....  |..+..+.     .
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~l----G------a~~v--~~~~~~~~~i~~~~  240 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEEL----D------ATYV--DSRQTPVEDVPDVY  240 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHT----T------CEEE--ETTTSCGGGHHHHS
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHc----C------Cccc--CCCccCHHHHHHhC
Confidence            8999999865 7777 7777 543 345 999999887   77777642    1      1112  22211110     1


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +.+|+|+-...     . ...+..+.++|+++|.++....
T Consensus       241 gg~Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          241 EQMDFIYEATG-----F-PKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             CCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECCC-----C-hHHHHHHHHHHhcCCEEEEEeC
Confidence            36899984322     1 2457889999999999887654

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.49  E-value=0.27  Score=40.42  Aligned_cols=96  Identities=18%  Similarity=0.218  Sum_probs=61.8

Q ss_pred             cCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---cc--------
Q 026688           57 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DI--------  123 (235)
Q Consensus        57 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~--------  123 (235)
                      ....++.+||-+|+ | .|..+..+++.. .+++++++.++.-++.+++.=.        . .++..   |.        
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~lGa--------~-~vi~~~~~d~~~~~~~~~  293 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAMGA--------E-AIIDRNAEGYRFWKDENT  293 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTC--------C-EEEETTTTTCCSEEETTE
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC--------c-EEEecCcCcccccccccc
Confidence            35567899999997 4 377777777764 4589999999988888865311        1 11111   10        


Q ss_pred             ----------ccC-C-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          124 ----------SRL-P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       124 ----------~~~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                                ..+ . .....+|+|+-...       ...+..+.++|+++|.+++..
T Consensus       294 ~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          294 QDPKEWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             ECHHHHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEESC
T ss_pred             cchHHHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEEe
Confidence                      000 0 11257999984322       145788899999999998754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.47  E-value=0.093  Score=40.58  Aligned_cols=94  Identities=17%  Similarity=0.048  Sum_probs=58.7

Q ss_pred             CCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc-ccCCCCCCceeE
Q 026688           59 PVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSIDA  135 (235)
Q Consensus        59 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~  135 (235)
                      ..++.+||-.|+ | .|..+..+++.. .++|+++|.+++-++.+++.    +   . . .+...+- .+..-.-+.+|+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g---a-~-~~~~~~~~~~~~~~~~~~d~  192 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL----G---A-E-EAATYAEVPERAKAWGGLDL  192 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT----T---C-S-EEEEGGGHHHHHHHTTSEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----C---C-C-EEEECCcchhHHHHhcCceE
Confidence            556899999998 3 477777777654 35999999998877777541    1   1 1 1111111 111000156999


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      |+. ..-       ..++.+.++++++|.++....
T Consensus       193 vid-~g~-------~~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          193 VLE-VRG-------KEVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             EEE-CSC-------TTHHHHHTTEEEEEEEEEC--
T ss_pred             EEE-CCH-------HHHHHHHHhhccCCEEEEEeC
Confidence            986 322       247788999999999887543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.41  E-value=0.084  Score=41.68  Aligned_cols=96  Identities=10%  Similarity=0.104  Sum_probs=62.3

Q ss_pred             CCCCCCeEEEecCCC-chHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe----ccc-ccCCCCC
Q 026688           58 KPVLGGNIIDASCGS-GLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR----ADI-SRLPFAS  130 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~----~d~-~~~~~~~  130 (235)
                      .. ++.+||-+|+|. |..+..+++.. +.++|+++|.+++-++.+++. .      . . .++.    .|. .+.. ..
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l-G------a-~-~vi~~~~~~~~~~~~~-~g  236 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL-G------A-D-YVSEMKDAESLINKLT-DG  236 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-T------C-S-EEECHHHHHHHHHHHH-TT
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh-C------C-C-EEeccccchHHHHHhh-cC
Confidence            44 689999999975 67777776653 235899999999888888653 1      1 1 1111    111 1111 12


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ..+|+|+.....      ...++.+.++|+|+|.++....
T Consensus       237 ~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          237 LGASIAIDLVGT------EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             CCEEEEEESSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCccEEEECCCC------hHHHHHHHHHhhcCCEEEEeCC
Confidence            379999954321      2467889999999999887654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.30  E-value=0.062  Score=43.02  Aligned_cols=101  Identities=13%  Similarity=0.140  Sum_probs=54.2

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ++.+|+-+|+|. |......++.. .++|+++|.++..++.+.+...       ..+.....+..++.-.-..+|+|+..
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~~g-------~~~~~~~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDVFG-------GRVITLTATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTT-------TSEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHhcC-------ceEEEecCCHHHHHHHHhCCCEEEEC
Confidence            368999999964 44444443332 3499999999987776654331       12222111111111001357999865


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ........+.-+.+.+.+.++|||.++...
T Consensus       237 ~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          237 VLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            443311111123466778889999877543

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=94.15  E-value=0.087  Score=42.89  Aligned_cols=46  Identities=11%  Similarity=0.156  Sum_probs=35.8

Q ss_pred             CCeEEEecCCCchHHHHHHHcC----C-CceEEEEeCCHHHHHHHHHHhhh
Q 026688           62 GGNIIDASCGSGLFSRIFAKSG----L-FSLVVALDYSENMLKQCYEFVQQ  107 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~----~-~~~v~~~D~s~~~~~~a~~~~~~  107 (235)
                      +.+|+|+|+|.|.+...+++..    + ..+++.||+|+.+.+.=++++..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            4799999999999988776532    1 24799999999887776666653

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=94.13  E-value=0.29  Score=38.12  Aligned_cols=96  Identities=16%  Similarity=0.091  Sum_probs=58.3

Q ss_pred             hhcCCCCCCeEEEec-CCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCCCCC
Q 026688           55 GYLKPVLGGNIIDAS-CGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASS  131 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~  131 (235)
                      ......++.+||-.| +|. |..+..+++.. .++|++++ ++.-++.+++.    +   . . .++..+-.+ ......
T Consensus       146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~l----G---a-~-~~i~~~~~~~~~~~~~  214 (321)
T 3tqh_A          146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKAL----G---A-E-QCINYHEEDFLLAIST  214 (321)
T ss_dssp             HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHHH----T---C-S-EEEETTTSCHHHHCCS
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHHc----C---C-C-EEEeCCCcchhhhhcc
Confidence            445667789999996 554 88888887764 45888887 45446665542    1   1 1 122111111 111124


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      .+|+|+-...      . ..+..+.++|+++|.++..
T Consensus       215 g~D~v~d~~g------~-~~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          215 PVDAVIDLVG------G-DVGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             CEEEEEESSC------H-HHHHHHGGGEEEEEEEEEC
T ss_pred             CCCEEEECCC------c-HHHHHHHHhccCCCEEEEe
Confidence            6899884322      1 2247889999999999875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.11  E-value=0.074  Score=42.45  Aligned_cols=101  Identities=16%  Similarity=0.140  Sum_probs=57.7

Q ss_pred             CCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           62 GGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      +.+|+-+|+|. |......++.. .++|+++|.+++-++.+++....       .+.....+..++.-.-..+|+|+...
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~DvVI~~~  238 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-------RVELLYSNSAEIETAVAEADLLIGAV  238 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHHHHHHHHTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhCc-------eeEeeeCCHHHHHHHHcCCCEEEECC
Confidence            58999999975 55444444432 23899999999888877665432       12222111111110013589998655


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .......+.-+.+...+.++|||.++....
T Consensus       239 ~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          239 LVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            443211221123456778899998876543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.00  E-value=0.5  Score=37.20  Aligned_cols=95  Identities=13%  Similarity=0.010  Sum_probs=60.9

Q ss_pred             hhcCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----
Q 026688           55 GYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----  127 (235)
                      +.....++.+||-+|+ | .|..+..+++.. .++|+++ .++.-++.+++.    +      ...+. +-.+..     
T Consensus       144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~l----G------a~~i~-~~~~~~~~~~~  210 (343)
T 3gaz_A          144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDL----G------ATPID-ASREPEDYAAE  210 (343)
T ss_dssp             TTTCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHH----T------SEEEE-TTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHc----C------CCEec-cCCCHHHHHHH
Confidence            4455667899999994 4 477777777653 3589999 788877777653    1      11111 111110     


Q ss_pred             -CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          128 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                       .....+|+|+-...     .  ..+..+.++|+++|.++...
T Consensus       211 ~~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          211 HTAGQGFDLVYDTLG-----G--PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             HHTTSCEEEEEESSC-----T--HHHHHHHHHEEEEEEEEESC
T ss_pred             HhcCCCceEEEECCC-----c--HHHHHHHHHHhcCCeEEEEc
Confidence             12347999985332     1  45788899999999988754

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.99  E-value=0.41  Score=38.20  Aligned_cols=95  Identities=13%  Similarity=0.074  Sum_probs=56.2

Q ss_pred             CCCCCeEEEec-CC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--C-CCCCce
Q 026688           59 PVLGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--P-FASSSI  133 (235)
Q Consensus        59 ~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~~~~~  133 (235)
                      ..++.+||-.| +| .|..+..+++.. .++|++++ ++.-++.+++    .+   . . .++..+-.+.  . .....+
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~----lG---a-~-~v~~~~~~~~~~~~~~~~g~  249 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRK----LG---A-D-DVIDYKSGSVEEQLKSLKPF  249 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHH----TT---C-S-EEEETTSSCHHHHHHTSCCB
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHH----cC---C-C-EEEECCchHHHHHHhhcCCC
Confidence            55688999999 44 477777777754 35899988 6666666543    11   1 1 1111111110  0 012468


Q ss_pred             eEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      |+|+....     .....+....++++++|.++...
T Consensus       250 D~vid~~g-----~~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          250 DFILDNVG-----GSTETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             SEEEESSC-----TTHHHHGGGGBCSSSCCEEEESC
T ss_pred             CEEEECCC-----ChhhhhHHHHHhhcCCcEEEEeC
Confidence            99884332     22234567788999999988754

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.93  E-value=0.59  Score=35.83  Aligned_cols=77  Identities=13%  Similarity=0.191  Sum_probs=53.5

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C--------C-
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--------F-  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--------~-  128 (235)
                      +++||-.|++.|   .++..|++++.  +|++++.++..++.+.+.+...+   ..++.++..|+.+. .        . 
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~~v~~~~~~~~   86 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN---HENVVFHQLDVTDPIATMSSLADFIK   86 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT---CCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEccCCCcHHHHHHHHHHHH
Confidence            567888887665   33445566665  99999999988777777665543   34788999999764 2        0 


Q ss_pred             -CCCceeEEEeccccc
Q 026688          129 -ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 -~~~~~D~i~~~~~l~  143 (235)
                       ..+..|+++.+..+.
T Consensus        87 ~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           87 THFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHSSCCEEEECCCCC
T ss_pred             HhCCCCCEEEECCccc
Confidence             014789999876653

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=93.78  E-value=0.67  Score=34.73  Aligned_cols=100  Identities=23%  Similarity=0.274  Sum_probs=64.6

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C---------
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F---------  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~---------  128 (235)
                      ++++|-.|++.|   ..+..+++.+.  +|+.+|.+++.++...+.+       ..++.++..|+.+.. .         
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEF-------GPRVHALRSDIADLNEIAVLGAAAGQ   78 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCcceEEEccCCCHHHHHHHHHHHHH
Confidence            678888887665   33445666665  8999999988777766554       236788889987632 0         


Q ss_pred             CCCceeEEEecccccccC-----ChH--------------HHHHHHHHhccCCcEEEEEEe
Q 026688          129 ASSSIDAVHAGAAIHCWS-----SPS--------------TGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~-----~~~--------------~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .-+..|+++.+.......     +.+              ...+.+.+.++++|.++....
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence            014789999876543321     111              235566667777888776554

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.77  E-value=0.83  Score=34.31  Aligned_cols=105  Identities=18%  Similarity=0.263  Sum_probs=66.7

Q ss_pred             CCeEEEecCC--Cc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC--
Q 026688           62 GGNIIDASCG--SG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--  129 (235)
Q Consensus        62 ~~~vLdiG~G--~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--  129 (235)
                      ++++|-.|++  .|   .++..+++.+.  +|+.++.++...+.+.+.....+   ..++.++.+|+.+..     +.  
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~   81 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLD---RNDSIILPCDVTNDAEIETCFASI   81 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSS---SCCCEEEECCCSSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcC---CCCceEEeCCCCCHHHHHHHHHHH
Confidence            5788888876  33   34556666665  89999988766666655544432   236888999997642     00  


Q ss_pred             ---CCceeEEEecccccc----c-----CChH--------------HHHHHHHHhccCCcEEEEEEec
Q 026688          130 ---SSSIDAVHAGAAIHC----W-----SSPS--------------TGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       130 ---~~~~D~i~~~~~l~~----~-----~~~~--------------~~l~~~~~~L~pgG~li~~~~~  171 (235)
                         .+..|+++.+..+..    .     .+.+              .+++.+...++++|.++.....
T Consensus        82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  149 (266)
T 3oig_A           82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL  149 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence               146899997755432    1     1111              2456677778888888876643

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=93.76  E-value=0.59  Score=36.97  Aligned_cols=98  Identities=5%  Similarity=-0.074  Sum_probs=62.5

Q ss_pred             hhcCCCCC--CeEEEecC--CCchHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--
Q 026688           55 GYLKPVLG--GNIIDASC--GSGLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  127 (235)
Q Consensus        55 ~~~~~~~~--~~vLdiG~--G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--  127 (235)
                      ......++  .+||-.|+  |.|..+..+++.. .+ +|+++|.+++-++.+++.+.      . .. .  .|..+..  
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g------~-~~-~--~d~~~~~~~  220 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELG------F-DA-A--INYKKDNVA  220 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSC------C-SE-E--EETTTSCHH
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcC------C-ce-E--EecCchHHH
Confidence            44556667  89999998  3466666666654 45 89999999877776654221      1 11 1  1221111  


Q ss_pred             -----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 -----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 -----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                           ...+.+|+++.+..       ...+..+.++|+++|++++...
T Consensus       221 ~~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          221 EQLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             HHHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence                 11126899986544       1467889999999999987643

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=93.70  E-value=0.99  Score=35.11  Aligned_cols=78  Identities=13%  Similarity=0.202  Sum_probs=53.7

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      +++||-.|++.|   .++..|++.+.  +|++++.++..++.+.+.+...+.  ..++.++..|+.+..     +     
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~   83 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGS--GPEVMGVQLDVASREGFKMAADEVEA   83 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            568888888765   34445666665  899999999888877776654421  236888999987632     0     


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      ..+..|+++.+..+.
T Consensus        84 ~~g~id~lv~nAg~~   98 (319)
T 3ioy_A           84 RFGPVSILCNNAGVN   98 (319)
T ss_dssp             HTCCEEEEEECCCCC
T ss_pred             hCCCCCEEEECCCcC
Confidence            014689999876653

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=93.57  E-value=0.33  Score=38.62  Aligned_cols=88  Identities=11%  Similarity=0.053  Sum_probs=56.2

Q ss_pred             CCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCH---HHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC------CC
Q 026688           62 GGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSE---NMLKQCYEFVQQESNFPKENFLLVRADISRLPFA------SS  131 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~---~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~------~~  131 (235)
                      +.+||-+|+|. |..+..+++.. .++|+++|.++   +-++.+++.    +      ....  | .+ .+.      ..
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~~----g------a~~v--~-~~-~~~~~~~~~~~  245 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEET----K------TNYY--N-SS-NGYDKLKDSVG  245 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHHH----T------CEEE--E-CT-TCSHHHHHHHC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHHh----C------Ccee--c-hH-HHHHHHHHhCC
Confidence            78999999853 55555555542 24999999987   766666542    1      1122  2 21 110      14


Q ss_pred             ceeEEEecccccccCChHHHH-HHHHHhccCCcEEEEEEe
Q 026688          132 SIDAVHAGAAIHCWSSPSTGV-AEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l-~~~~~~L~pgG~li~~~~  170 (235)
                      .+|+|+......      ..+ +.+.+.|+++|.++....
T Consensus       246 ~~d~vid~~g~~------~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          246 KFDVIIDATGAD------VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CEEEEEECCCCC------THHHHHHGGGEEEEEEEEECSC
T ss_pred             CCCEEEECCCCh------HHHHHHHHHHHhcCCEEEEEec
Confidence            699998544321      245 888999999999887644

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.29  E-value=0.28  Score=38.65  Aligned_cols=95  Identities=14%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  127 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------  127 (235)
                      .... ++.+||-+|+|. |..+..+++.. .+ +|+++|.+++-++.+++. ..         .++  |..+..      
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a~---------~v~--~~~~~~~~~~~~  225 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-AD---------RLV--NPLEEDLLEVVR  225 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-CS---------EEE--CTTTSCHHHHHH
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-HH---------hcc--CcCccCHHHHHH
Confidence            4455 789999999864 67777777764 35 899999998776666542 11         111  211100      


Q ss_pred             -CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       .....+|+|+....     . ...++.+.++|+++|.++....
T Consensus       226 ~~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          226 RVTGSGVEVLLEFSG-----N-EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             HHHSSCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             HhcCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence             01246999985332     1 2457889999999999887643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=93.23  E-value=1  Score=36.00  Aligned_cols=113  Identities=11%  Similarity=0.028  Sum_probs=67.9

Q ss_pred             HHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           51 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        51 ~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      +.+++.+.. ..+.+||.++.+.|.++..++...    ++.+.=|--.....+.++..++.. ...+++.  +..+.  .
T Consensus        27 ~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~----~~~~~ds~~~~~~~~~n~~~~~~~-~~~~~~~--~~~~~--~   97 (375)
T 4dcm_A           27 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHK----PYSIGDSYISELATRENLRLNGID-ESSVKFL--DSTAD--Y   97 (375)
T ss_dssp             HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGC----CEEEESCHHHHHHHHHHHHHTTCC-GGGSEEE--ETTSC--C
T ss_pred             HHHHHhhhhccCCCCEEEECCCCCHHHHhhccCC----ceEEEhHHHHHHHHHHHHHHcCCC-ccceEec--ccccc--c
Confidence            455555433 245789999999999999887653    344432444445566666665531 1234442  22221  2


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ...||+|+.... -+.......|..+...|+||+.+++...+..
T Consensus        98 ~~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~  140 (375)
T 4dcm_A           98 PQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAKARD  140 (375)
T ss_dssp             CSSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEEEEEEEGGG
T ss_pred             ccCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEEEEEecccc
Confidence            367999885221 1111224668889999999999988776653

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=93.10  E-value=3.5  Score=36.41  Aligned_cols=44  Identities=14%  Similarity=0.091  Sum_probs=35.0

Q ss_pred             CCeEEEecCCCchHHHHHHHcCC-----CceEEEEeCCHHHHHHHHHHh
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGL-----FSLVVALDYSENMLKQCYEFV  105 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~-----~~~v~~~D~s~~~~~~a~~~~  105 (235)
                      ..+|||+-||.|.++.-+.+.+.     .-.+.++|+++.+++.-+.+.
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            47899999999999988876541     125789999999888877763

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=93.07  E-value=1.2  Score=36.42  Aligned_cols=98  Identities=18%  Similarity=0.117  Sum_probs=61.1

Q ss_pred             cCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEecccc---------
Q 026688           57 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADIS---------  124 (235)
Q Consensus        57 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~---------  124 (235)
                      ....++.+||-.|+ | .|..+..+++.. .+++++++.+++-++.+++.    +   ... +.....|..         
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~l----G---a~~~i~~~~~~~~~~~~~~~~~  287 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRAL----G---CDLVINRAELGITDDIADDPRR  287 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T---CCCEEEHHHHTCCTTGGGCHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C---CCEEEecccccccccccccccc
Confidence            45567899999997 4 377777777653 45899999999888877542    1   111 111111110         


Q ss_pred             ----------cC-CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          125 ----------RL-PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       125 ----------~~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                                .. ......+|+|+-...-       ..+....++++++|.++...
T Consensus       288 ~~~~~~~~~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          288 VVETGRKLAKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEESC
T ss_pred             cchhhhHHHHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEEe
Confidence                      00 0012468999854332       35778889999999998864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.06  E-value=1.3  Score=29.67  Aligned_cols=91  Identities=10%  Similarity=0.063  Sum_probs=57.0

Q ss_pred             CCeEEEecCCC-chH-HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeE
Q 026688           62 GGNIIDASCGS-GLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  135 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~-~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~  135 (235)
                      ..+|+-+|+|. |.. +..|.+.+.  .|+++|.+++.++.+++.          .+.++.+|..+..    .....+|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~~----------g~~~i~gd~~~~~~l~~a~i~~ad~   74 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRER----------GVRAVLGNAANEEIMQLAHLECAKW   74 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHT----------TCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHc----------CCCEEECCCCCHHHHHhcCcccCCE
Confidence            46899999976 533 334444454  899999999888777641          4567788876531    12346888


Q ss_pred             EEecccccccCChH--HHHHHHHHhccCCcEEEEEE
Q 026688          136 VHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       136 i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~  169 (235)
                      +++.     .++..  ..+-...+.+.|+..++...
T Consensus        75 vi~~-----~~~~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           75 LILT-----IPNGYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             EEEC-----CSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             EEEE-----CCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence            8853     23322  22334556677887766544

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=93.03  E-value=1.7  Score=35.20  Aligned_cols=45  Identities=7%  Similarity=0.012  Sum_probs=36.3

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCC-ce----EEEEeCCHHHHHHHHHHhh
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLF-SL----VVALDYSENMLKQCYEFVQ  106 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~-~~----v~~~D~s~~~~~~a~~~~~  106 (235)
                      ..+|+|+-||.|.....+.+.+.. ..    |.++|+++..+..-+.+..
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            468999999999999999887621 13    7889999999888777664

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.95  E-value=1.3  Score=33.95  Aligned_cols=104  Identities=12%  Similarity=0.172  Sum_probs=65.4

Q ss_pred             CCCeEEEecCCCc-----hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C--
Q 026688           61 LGGNIIDASCGSG-----LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F--  128 (235)
Q Consensus        61 ~~~~vLdiG~G~G-----~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--  128 (235)
                      .++++|-.|++.|     .++..+++.+.  +|+.++.++...+.+++.....     .++.++.+|+.+..     +  
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEEL-----GAFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHH-----TCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHH
Confidence            3678888887632     34556666665  8999999876555555544432     25778889987632     0  


Q ss_pred             ---CCCceeEEEecccccc-------c--CCh--------------HHHHHHHHHhccCCcEEEEEEec
Q 026688          129 ---ASSSIDAVHAGAAIHC-------W--SSP--------------STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       129 ---~~~~~D~i~~~~~l~~-------~--~~~--------------~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                         .-+..|+++.+..+..       +  .+.              ..+++.+.+.++++|.++.....
T Consensus       103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~  171 (293)
T 3grk_A          103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY  171 (293)
T ss_dssp             HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred             HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence               0147899998765432       0  011              13456677777788888876543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=92.94  E-value=1.1  Score=34.20  Aligned_cols=100  Identities=17%  Similarity=0.126  Sum_probs=65.7

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++.+|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.+       ..+...+.+|+.+..          -
T Consensus        29 gKvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~-------g~~~~~~~~Dv~~~~~v~~~~~~~~~   99 (273)
T 4fgs_A           29 AKIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEI-------GGGAVGIQADSANLAELDRLYEKVKA   99 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHc-------CCCeEEEEecCCCHHHHHHHHHHHHH
Confidence            677787787776   34556666665  9999999998887766554       235677888987632          0


Q ss_pred             CCCceeEEEecccccccCC-----h--------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          129 ASSSIDAVHAGAAIHCWSS-----P--------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~-----~--------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .-+..|+++.+........     .              -...+.+.+.++.+|.++....
T Consensus       100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS  160 (273)
T 4fgs_A          100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS  160 (273)
T ss_dssp             HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence            1257899998765433211     1              1345677778888887766543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.83  E-value=2.4  Score=32.08  Aligned_cols=103  Identities=17%  Similarity=0.147  Sum_probs=65.5

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCC------------HHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYS------------ENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.+|.+            ...++.+...+...    ..++.++..|+.+.
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~   83 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT----GRKAYTAEVDVRDR   83 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT----TSCEEEEECCTTCH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc----CCceEEEEccCCCH
Confidence            578888887665   34445666665  89999987            66666665555443    34788899999763


Q ss_pred             C-----CC-----CCceeEEEecccccccC---Ch--------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          127 P-----FA-----SSSIDAVHAGAAIHCWS---SP--------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 ~-----~~-----~~~~D~i~~~~~l~~~~---~~--------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .     +.     -+..|+++.+.......   +.              -.+++.+.+.++++|.++....
T Consensus        84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence            2     00     13789999876543221   11              1345667777778888776543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.82  E-value=0.082  Score=42.35  Aligned_cols=97  Identities=19%  Similarity=0.120  Sum_probs=56.1

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-----------------
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-----------------  122 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----------------  122 (235)
                      ++.+|+-+|+|. |.....+++.. .++|+++|.++.-++.+++. .         .++...+                 
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~l-G---------a~~~~l~~~~~~~~gya~~~~~~~  251 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRSV-G---------AQWLDLGIDAAGEGGYARELSEAE  251 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHHT-T---------CEECCCC-------------CHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C---------CeEEeccccccccccchhhhhHHH
Confidence            578999999986 55555444432 34899999999887777652 1         1121111                 


Q ss_pred             ----cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          123 ----ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       123 ----~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                          ...+.-.-...|+|+..-....-..+.-+-+++.+.+|||+.++-.
T Consensus       252 ~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv  301 (381)
T 3p2y_A          252 RAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL  301 (381)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred             HhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence                0011101257899996432221112222346788889998876643

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=92.72  E-value=0.34  Score=37.84  Aligned_cols=97  Identities=11%  Similarity=0.082  Sum_probs=58.9

Q ss_pred             CCCCCC-eEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc-cc-C-CCCCC
Q 026688           58 KPVLGG-NIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SR-L-PFASS  131 (235)
Q Consensus        58 ~~~~~~-~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~-~-~~~~~  131 (235)
                      ...++. +||-.|+ | .|..+..+++.. .+++++++.+++-++.+++. .      . ...+-..+. .+ . .....
T Consensus       146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l-G------a-~~v~~~~~~~~~~~~~~~~~  216 (330)
T 1tt7_A          146 GLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQL-G------A-SEVISREDVYDGTLKALSKQ  216 (330)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHH-T------C-SEEEEHHHHCSSCCCSSCCC
T ss_pred             CcCCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C------C-cEEEECCCchHHHHHHhhcC
Confidence            344454 8999997 4 477777766653 24899999988777777652 1      1 111111111 11 1 11234


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+|+|+....     .  ..+..+.++++++|++++...
T Consensus       217 ~~d~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          217 QWQGAVDPVG-----G--KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             CEEEEEESCC-----T--HHHHHHHTTEEEEEEEEECCC
T ss_pred             CccEEEECCc-----H--HHHHHHHHhhcCCCEEEEEec
Confidence            6899884332     2  357888999999999987543

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=92.40  E-value=2.4  Score=31.94  Aligned_cols=105  Identities=19%  Similarity=0.221  Sum_probs=65.6

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeC-CHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~-s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      ++++|-.|++.|   ..+..|++.+.  +|+.++. ++..++...+.+...    ..++.++..|+.+..     +.   
T Consensus        18 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~   91 (270)
T 3is3_A           18 GKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKAL----GSDAIAIKADIRQVPEIVKLFDQAV   91 (270)
T ss_dssp             TCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            577888887665   33445666665  8888776 455566555555443    346888899987632     00   


Q ss_pred             --CCceeEEEecccccccCC-----h--------------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          130 --SSSIDAVHAGAAIHCWSS-----P--------------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       130 --~~~~D~i~~~~~l~~~~~-----~--------------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                        -+..|+++.+........     .              -.+++.+.+.++++|.++......
T Consensus        92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence              136899997755433211     1              134567778888888888766543

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=92.36  E-value=4.8  Score=37.77  Aligned_cols=44  Identities=16%  Similarity=0.127  Sum_probs=36.6

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHh
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  105 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~  105 (235)
                      ..+++|+-||.|.++.-+.+.+....+.++|+++..++..+.+.
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~  894 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN  894 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence            56899999999999999988874235889999999888777663

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=92.31  E-value=2.3  Score=31.82  Aligned_cols=105  Identities=19%  Similarity=0.191  Sum_probs=67.6

Q ss_pred             CCeEEEecCC----Cc-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---------
Q 026688           62 GGNIIDASCG----SG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------  127 (235)
Q Consensus        62 ~~~vLdiG~G----~G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------  127 (235)
                      ++++|--|++    -| ..+..|++.+.  +|..+|.++..++.+.+.+...+   ..++.++..|+.+..         
T Consensus         6 gK~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~   80 (256)
T 4fs3_A            6 NKTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLN---QPEAHLYQIDVQSDEEVINGFEQI   80 (256)
T ss_dssp             TCEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGT---CSSCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CCcEEEEEccCCCHHHHHHHHHHH
Confidence            6788888853    33 34556777775  99999999988888887776643   346788889987632         


Q ss_pred             -CCCCceeEEEeccccccc-------C--ChH--------------HHHHHHHHhccCCcEEEEEEec
Q 026688          128 -FASSSIDAVHAGAAIHCW-------S--SPS--------------TGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~-------~--~~~--------------~~l~~~~~~L~pgG~li~~~~~  171 (235)
                       -.-+..|+++.+..+...       .  ..+              ...+.+...++.+|.|+.....
T Consensus        81 ~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~  148 (256)
T 4fs3_A           81 GKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYL  148 (256)
T ss_dssp             HHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECG
T ss_pred             HHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecc
Confidence             012578999876543211       1  111              1223455667788988766543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=92.26  E-value=0.13  Score=41.60  Aligned_cols=42  Identities=21%  Similarity=0.117  Sum_probs=31.8

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYE  103 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~  103 (235)
                      ++.+|+-+|+|. |.....+++.. .+.|+++|.++.-++.+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence            468999999996 65555555543 4599999999988777765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.12  E-value=2.2  Score=29.94  Aligned_cols=91  Identities=10%  Similarity=0.071  Sum_probs=53.8

Q ss_pred             CCeEEEecCCC-chH-HHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----CC-CCCce
Q 026688           62 GGNIIDASCGS-GLF-SRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PF-ASSSI  133 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~-~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~-~~~~~  133 (235)
                      +.+|+-+|+|. |.. +..+.+. +.  .|+++|.+++.++.+++.          .+.+..+|..+.    .. ....+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~~~----------g~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHRSE----------GRNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHHHT----------TCCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHHHC----------CCCEEEcCCCCHHHHHhccCCCCC
Confidence            56899999875 433 3344455 54  899999999877665531          244566666432    11 23568


Q ss_pred             eEEEecccccccCChH--HHHHHHHHhccCCcEEEEEE
Q 026688          134 DAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~  169 (235)
                      |+|+...     ++..  ..+-...+.+.|++.++...
T Consensus       107 d~vi~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          107 KLVLLAM-----PHHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CEEEECC-----SSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CEEEEeC-----CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            9888632     2222  22233455566777777644

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.05  E-value=0.49  Score=36.93  Aligned_cols=97  Identities=13%  Similarity=0.118  Sum_probs=58.3

Q ss_pred             CCCCCC-eEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc-cc-C-CCCCC
Q 026688           58 KPVLGG-NIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SR-L-PFASS  131 (235)
Q Consensus        58 ~~~~~~-~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~-~-~~~~~  131 (235)
                      ...++. +||-.|+ | .|..+..+++.. .++|++++.+++-++.+++ +   +   ... .+-..+. .+ . .....
T Consensus       145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~-l---G---a~~-~i~~~~~~~~~~~~~~~~  215 (328)
T 1xa0_A          145 GLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV-L---G---AKE-VLAREDVMAERIRPLDKQ  215 (328)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH-T---T---CSE-EEECC---------CCSC
T ss_pred             CCCCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH-c---C---CcE-EEecCCcHHHHHHHhcCC
Confidence            344454 8999997 3 477777777654 3589999999877777764 2   1   111 1111111 01 0 11234


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+|+|+-...     .  ..+..+.++++++|.+++...
T Consensus       216 ~~d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          216 RWAAAVDPVG-----G--RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             CEEEEEECST-----T--TTHHHHHHTEEEEEEEEECSC
T ss_pred             cccEEEECCc-----H--HHHHHHHHhhccCCEEEEEee
Confidence            6899885432     1  247788899999999987543

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=92.03  E-value=1.7  Score=32.58  Aligned_cols=104  Identities=12%  Similarity=0.101  Sum_probs=63.1

Q ss_pred             CCCCeEEEecCC--Cc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-
Q 026688           60 VLGGNIIDASCG--SG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-  128 (235)
Q Consensus        60 ~~~~~vLdiG~G--~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-  128 (235)
                      ..+++||-.|++  .|   .++..|++.+.  +|+.++.+....+.+++.....     .++.++.+|+.+..     + 
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~   84 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEF-----GSELVFPCDVADDAQIDALFA   84 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHT-----TCCCEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHc-----CCcEEEECCCCCHHHHHHHHH
Confidence            347889999875  33   23445566665  8999998865555554443332     24778889987632     0 


Q ss_pred             ----CCCceeEEEeccccccc----------CChH--------------HHHHHHHHhccCCcEEEEEEe
Q 026688          129 ----ASSSIDAVHAGAAIHCW----------SSPS--------------TGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 ----~~~~~D~i~~~~~l~~~----------~~~~--------------~~l~~~~~~L~pgG~li~~~~  170 (235)
                          .-+..|+++.+..+...          .+.+              .+++.+.+.++++|.++....
T Consensus        85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           85 SLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             HHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence                01478999987654321          1111              235566666777787776554

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=92.03  E-value=2.7  Score=32.08  Aligned_cols=103  Identities=20%  Similarity=0.236  Sum_probs=62.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHH-HHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSEN-MLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~-~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----  128 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.++.++. ..+...+.+...    ..++.++.+|+.+..     +    
T Consensus        47 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~  120 (291)
T 3ijr_A           47 GKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE----GVKCVLLPGDLSDEQHCKDIVQETV  120 (291)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT----TCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            578888887665   33445566665  8999998764 344444444332    346888999997632     0    


Q ss_pred             -CCCceeEEEecccccccC------Ch--------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          129 -ASSSIDAVHAGAAIHCWS------SP--------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 -~~~~~D~i~~~~~l~~~~------~~--------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       .-+..|+++.+.......      +.              -.+++.+.+.++++|.++....
T Consensus       121 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          121 RQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence             014689999775432211      11              1345667777788888776543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=92.01  E-value=1.5  Score=33.24  Aligned_cols=75  Identities=13%  Similarity=0.112  Sum_probs=51.1

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC---------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---------A  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~  129 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.+|.++..++...+.+...    ..++.++..|+.+...         .
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~~  106 (275)
T 4imr_A           33 GRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIAS----GGTAQELAGDLSEAGAGTDLIERAEA  106 (275)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHT----TCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc----CCeEEEEEecCCCHHHHHHHHHHHHH
Confidence            577887787655   33445566665  8999999887777766666543    3468889999976420         0


Q ss_pred             CCceeEEEecccc
Q 026688          130 SSSIDAVHAGAAI  142 (235)
Q Consensus       130 ~~~~D~i~~~~~l  142 (235)
                      .+..|+++.+...
T Consensus       107 ~g~iD~lvnnAg~  119 (275)
T 4imr_A          107 IAPVDILVINASA  119 (275)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            1468999987654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.87  E-value=0.84  Score=30.55  Aligned_cols=67  Identities=21%  Similarity=0.191  Sum_probs=43.7

Q ss_pred             CCeEEEecCCC-ch-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeE
Q 026688           62 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  135 (235)
Q Consensus        62 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~  135 (235)
                      ..+|+-+|+|. |. ++..+.+.+.  +|+++|.+++.++.+++.          ...++.+|..+..    .....+|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~~----------~~~~~~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLEDE----------GFDAVIADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHT----------TCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHC----------CCcEEECCCCCHHHHHhCCcccCCE
Confidence            46899999975 33 3334444454  899999999887766541          3567778876531    12356898


Q ss_pred             EEecc
Q 026688          136 VHAGA  140 (235)
Q Consensus       136 i~~~~  140 (235)
                      |+...
T Consensus        74 vi~~~   78 (141)
T 3llv_A           74 VLITG   78 (141)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            88543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=91.62  E-value=3.1  Score=30.69  Aligned_cols=73  Identities=22%  Similarity=0.321  Sum_probs=49.4

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-CCC
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-ASS  131 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-~~~  131 (235)
                      ++++||-.|++.|   .++..+++.+.  +|+.++.++..++...+.+       ..++.+...|+.+..     + ..+
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~   83 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNAL-------KDNYTIEVCNLANKEECSNLISKTS   83 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CSSEEEEECCTTSHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHh-------ccCccEEEcCCCCHHHHHHHHHhcC
Confidence            4678888887665   33445566665  8999999988777766554       236778888886532     1 124


Q ss_pred             ceeEEEecccc
Q 026688          132 SIDAVHAGAAI  142 (235)
Q Consensus       132 ~~D~i~~~~~l  142 (235)
                      ..|+++.+...
T Consensus        84 ~id~li~~Ag~   94 (249)
T 3f9i_A           84 NLDILVCNAGI   94 (249)
T ss_dssp             CCSEEEECCC-
T ss_pred             CCCEEEECCCC
Confidence            68999987654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=91.53  E-value=2.6  Score=31.59  Aligned_cols=81  Identities=16%  Similarity=0.283  Sum_probs=50.0

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   .++..+++.+.  +|++++.++..++...+.+.....  ..++.++.+|+.+..     +.    
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFE--PQKTLFIQCDVADQQQLRDTFRKVVD   82 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSC--GGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcC--CCceEEEecCCCCHHHHHHHHHHHHH
Confidence            567888887654   33445555665  899999998776665554433110  235778888987632     00    


Q ss_pred             -CCceeEEEecccccccC
Q 026688          130 -SSSIDAVHAGAAIHCWS  146 (235)
Q Consensus       130 -~~~~D~i~~~~~l~~~~  146 (235)
                       -+..|+++.+.......
T Consensus        83 ~~g~id~lv~~Ag~~~~~  100 (267)
T 2gdz_A           83 HFGRLDILVNNAGVNNEK  100 (267)
T ss_dssp             HHSCCCEEEECCCCCCSS
T ss_pred             HcCCCCEEEECCCCCChh
Confidence             13579999876654333

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.50  E-value=3.5  Score=31.03  Aligned_cols=71  Identities=8%  Similarity=0.130  Sum_probs=48.2

Q ss_pred             CCeEEEecCCCchHHHHHHH----cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           62 GGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~----~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      .++||-.|+  |.++..+++    .+.  +|++++.++........          .+++++.+|+.++.  ...+|+|+
T Consensus         5 ~~~ilVtGa--G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~----------~~~~~~~~D~~d~~--~~~~d~vi   68 (286)
T 3ius_A            5 TGTLLSFGH--GYTARVLSRALAPQGW--RIIGTSRNPDQMEAIRA----------SGAEPLLWPGEEPS--LDGVTHLL   68 (286)
T ss_dssp             CCEEEEETC--CHHHHHHHHHHGGGTC--EEEEEESCGGGHHHHHH----------TTEEEEESSSSCCC--CTTCCEEE
T ss_pred             cCcEEEECC--cHHHHHHHHHHHHCCC--EEEEEEcChhhhhhHhh----------CCCeEEEecccccc--cCCCCEEE
Confidence            368999995  666665554    344  89999998865443322          35888999998765  46789999


Q ss_pred             ecccccccCCh
Q 026688          138 AGAAIHCWSSP  148 (235)
Q Consensus       138 ~~~~l~~~~~~  148 (235)
                      .........++
T Consensus        69 ~~a~~~~~~~~   79 (286)
T 3ius_A           69 ISTAPDSGGDP   79 (286)
T ss_dssp             ECCCCBTTBCH
T ss_pred             ECCCccccccH
Confidence            76655433333

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=91.46  E-value=0.84  Score=34.22  Aligned_cols=102  Identities=14%  Similarity=0.026  Sum_probs=60.8

Q ss_pred             CCeEEEecCCCchHHH----HHHH-cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC--
Q 026688           62 GGNIIDASCGSGLFSR----IFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--  129 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~----~l~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--  129 (235)
                      +++||-.|++ |.+..    .|++ .+.  .|++++.++..++...+.+...    ..++.++.+|+.+..     +.  
T Consensus         4 ~k~vlITGas-ggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~   76 (276)
T 1wma_A            4 IHVALVTGGN-KGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAE----GLSPRFHQLDIDDLQSIRALRDFL   76 (276)
T ss_dssp             CCEEEESSCS-SHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhc----CCeeEEEECCCCCHHHHHHHHHHH
Confidence            4677776654 44444    4444 444  8999999987777666655543    236788889987632     00  


Q ss_pred             ---CCceeEEEecccccccC----C-h--------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          130 ---SSSIDAVHAGAAIHCWS----S-P--------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 ---~~~~D~i~~~~~l~~~~----~-~--------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                         .+.+|+++.+.......    . .              ..+++.+.+.++++|.++....
T Consensus        77 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           77 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence               13789999765432211    1 1              1245556666666777776543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=91.42  E-value=0.93  Score=37.68  Aligned_cols=91  Identities=11%  Similarity=0.015  Sum_probs=55.3

Q ss_pred             CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           59 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        59 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ..++++|+-+|+|. |......++.. ..+|+++|.++.-++.+++.          ...+  .++.+.   -...|+|+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~~----------Ga~~--~~l~e~---l~~aDvVi  334 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMME----------GFDV--VTVEEA---IGDADIVV  334 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----------TCEE--CCHHHH---GGGCSEEE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCEE--ecHHHH---HhCCCEEE
Confidence            34588999999986 55555554443 35999999999877666531          1222  233221   13579998


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ....-.++-     -.+..+.++|||.++....
T Consensus       335 ~atgt~~~i-----~~~~l~~mk~ggilvnvG~  362 (494)
T 3ce6_A          335 TATGNKDII-----MLEHIKAMKDHAILGNIGH  362 (494)
T ss_dssp             ECSSSSCSB-----CHHHHHHSCTTCEEEECSS
T ss_pred             ECCCCHHHH-----HHHHHHhcCCCcEEEEeCC
Confidence            753322211     1256677899998875443

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=91.41  E-value=3  Score=31.56  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=49.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.+|.+++.++...+.+       ..++.++..|+.+..     +.    
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~~   99 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKI-------GCGAAACRVDVSDEQQIIAMVDACVA   99 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHH-------CSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc-------CCcceEEEecCCCHHHHHHHHHHHHH
Confidence            567888887665   34456666665  9999999988777665554       236778888987632     00    


Q ss_pred             -CCceeEEEeccccc
Q 026688          130 -SSSIDAVHAGAAIH  143 (235)
Q Consensus       130 -~~~~D~i~~~~~l~  143 (235)
                       -+..|+++.+....
T Consensus       100 ~~g~iD~lvnnAg~~  114 (277)
T 3gvc_A          100 AFGGVDKLVANAGVV  114 (277)
T ss_dssp             HHSSCCEEEECCCCC
T ss_pred             HcCCCCEEEECCCCC
Confidence             14689999876554

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=91.37  E-value=0.28  Score=38.45  Aligned_cols=58  Identities=21%  Similarity=0.122  Sum_probs=41.3

Q ss_pred             CCeeEEeccccc-CC-CCCCceeEEEeccccccc-----C---------ChHHHHHHHHHhccCCcEEEEEEec
Q 026688          114 ENFLLVRADISR-LP-FASSSIDAVHAGAAIHCW-----S---------SPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       114 ~~~~~~~~d~~~-~~-~~~~~~D~i~~~~~l~~~-----~---------~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ....++++|..+ +. ++.+++|+|++.--....     .         .....++++.++|+|||.+++....
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d   86 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG   86 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence            357788999865 32 456889999987443211     1         1347788999999999999987643

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=91.22  E-value=3.4  Score=31.13  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=48.8

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   .++..+++.+.  +|++++.++..++...+.+...+.  ..++.++.+|+.+..     +.    
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~  107 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGY--PGTLIPYRCDLSNEEDILSMFSAIRS  107 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--SSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCC--CceEEEEEecCCCHHHHHHHHHHHHH
Confidence            567887776554   23344555554  899999998777766655554321  235778888987632     00    


Q ss_pred             -CCceeEEEecccc
Q 026688          130 -SSSIDAVHAGAAI  142 (235)
Q Consensus       130 -~~~~D~i~~~~~l  142 (235)
                       .+.+|+++.+...
T Consensus       108 ~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          108 QHSGVDICINNAGL  121 (279)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             hCCCCCEEEECCCC
Confidence             1368999977654

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=91.16  E-value=1.9  Score=32.81  Aligned_cols=89  Identities=13%  Similarity=0.082  Sum_probs=51.9

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      .+|.-||+|. | .++..+.+.++...|+++|.+++.++.+.+    .+.     ......|..+.   ....|+|+..-
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~-----~~~~~~~~~~~---~~~aDvVilav   74 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGI-----VDEATADFKVF---AALADVIILAV   74 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTS-----CSEEESCTTTT---GGGCSEEEECS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCC-----cccccCCHHHh---hcCCCEEEEcC
Confidence            5799999986 4 344556666434589999999887766544    111     11122333221   13578888643


Q ss_pred             cccccCChHHHHHHHHHh-ccCCcEEE
Q 026688          141 AIHCWSSPSTGVAEISRV-LRPGGVFV  166 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~-L~pgG~li  166 (235)
                      -....   ..+++++... ++++..++
T Consensus        75 p~~~~---~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           75 PIKKT---IDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             CHHHH---HHHHHHHHTSCCCTTCEEE
T ss_pred             CHHHH---HHHHHHHHhcCCCCCCEEE
Confidence            32221   4566777777 77765444

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=91.07  E-value=3.9  Score=30.81  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=64.3

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCC-HHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      ++++|-.|++.|   .++..|++.+.  .|+.++.+ ...++...+.+...    ..++.++.+|+.+..     +.   
T Consensus        31 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~  104 (271)
T 3v2g_A           31 GKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQA----GGRAVAIRADNRDAEAIEQAIRETV  104 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            578888888765   34455666665  88888654 45555555555443    346788889987632     00   


Q ss_pred             --CCceeEEEecccccccCC-----h--------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          130 --SSSIDAVHAGAAIHCWSS-----P--------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 --~~~~D~i~~~~~l~~~~~-----~--------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                        -+..|+++.+........     .              -.+++.+.+.++++|.++....
T Consensus       105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          105 EALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence              136899998765432211     1              1346677778888888877654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.05  E-value=2.6  Score=32.23  Aligned_cols=104  Identities=17%  Similarity=0.147  Sum_probs=63.8

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCC--HHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C---
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYS--ENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s--~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---  128 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.++.+  ....+...+.+...    ..++.++.+|+.+..     +   
T Consensus        49 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~  122 (294)
T 3r3s_A           49 DRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEEC----GRKAVLLPGDLSDESFARSLVHKA  122 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHT----TCCEEECCCCTTSHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHHH
Confidence            578888887665   33445666665  88888876  34445554444433    346788888987632     0   


Q ss_pred             --CCCceeEEEecccccc-cC-----Ch--------------HHHHHHHHHhccCCcEEEEEEec
Q 026688          129 --ASSSIDAVHAGAAIHC-WS-----SP--------------STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       129 --~~~~~D~i~~~~~l~~-~~-----~~--------------~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                        .-+..|+++.+..... ..     +.              -.+++.+.+.++++|.++.....
T Consensus       123 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~  187 (294)
T 3r3s_A          123 REALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI  187 (294)
T ss_dssp             HHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred             HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence              0147899998765432 11     11              13456677778888888776543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=91.01  E-value=1.2  Score=33.33  Aligned_cols=103  Identities=16%  Similarity=0.126  Sum_probs=63.0

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEE-eCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVAL-DYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~-D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.+ +.++...+...+.+...    ..++.++.+|+.+..     +.   
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~   81 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKL----GRSALAIKADLTNAAEVEAAISAAA   81 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTT----TSCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            578888887765   34455666665  78877 66666666666655443    346788899987632     00   


Q ss_pred             --CCceeEEEeccccc-c---cCC--h--------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          130 --SSSIDAVHAGAAIH-C---WSS--P--------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 --~~~~D~i~~~~~l~-~---~~~--~--------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                        -+..|+++.+.... .   +.+  .              -.+++.+.+.++++|.++....
T Consensus        82 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  144 (259)
T 3edm_A           82 DKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS  144 (259)
T ss_dssp             HHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence              14789999775432 1   111  1              1235566666666777776543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=90.95  E-value=2.4  Score=33.61  Aligned_cols=89  Identities=13%  Similarity=0.069  Sum_probs=53.9

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ..+|.-||+|. | .++..+++.+.  .|+++|.+++.++.+.+.          .+. ...+..+.--.....|+|++.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~--~V~v~dr~~~~~~~l~~~----------g~~-~~~s~~e~~~~a~~~DvVi~~   88 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH--ECVVYDLNVNAVQALERE----------GIA-GARSIEEFCAKLVKPRVVWLM   88 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTT----------TCB-CCSSHHHHHHHSCSSCEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHC----------CCE-EeCCHHHHHhcCCCCCEEEEe
Confidence            46899999985 4 44556666665  899999999877665431          111 112222211111345998864


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      -.-.   ....++..+...+++|..++
T Consensus        89 vp~~---~v~~vl~~l~~~l~~g~iiI  112 (358)
T 4e21_A           89 VPAA---VVDSMLQRMTPLLAANDIVI  112 (358)
T ss_dssp             SCGG---GHHHHHHHHGGGCCTTCEEE
T ss_pred             CCHH---HHHHHHHHHHhhCCCCCEEE
Confidence            3332   34567788888888876554

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=90.94  E-value=3.4  Score=31.01  Aligned_cols=78  Identities=13%  Similarity=0.151  Sum_probs=50.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-CCCc
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-ASSS  132 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-~~~~  132 (235)
                      ++++|-.|++.|   ..+..+++.+.  +|+.+|.+++.++...+.+.....  ...+.++..|+.+..     . .-+.
T Consensus        10 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~g~   85 (267)
T 3t4x_A           10 GKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYP--DAILQPVVADLGTEQGCQDVIEKYPK   85 (267)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCT--TCEEEEEECCTTSHHHHHHHHHHCCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCC--CceEEEEecCCCCHHHHHHHHHhcCC
Confidence            567887777654   33445566665  899999998887776666654321  235677888886531     0 1246


Q ss_pred             eeEEEeccccc
Q 026688          133 IDAVHAGAAIH  143 (235)
Q Consensus       133 ~D~i~~~~~l~  143 (235)
                      .|+++.+....
T Consensus        86 id~lv~nAg~~   96 (267)
T 3t4x_A           86 VDILINNLGIF   96 (267)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            89999876543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.92  E-value=0.23  Score=39.91  Aligned_cols=42  Identities=21%  Similarity=0.112  Sum_probs=30.8

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYE  103 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~  103 (235)
                      ++.+|+-+|+|. |.....+++.. .++|+++|.++.-.+.++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence            578999999986 55555555543 3489999999877666654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=90.92  E-value=2.1  Score=32.18  Aligned_cols=77  Identities=16%  Similarity=0.199  Sum_probs=54.1

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.+...    ..++.++.+|+.+..          -
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRK----GYDAHGVAFDVTDELAIEAAFSKLDA   82 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHT----TCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            667777777665   33456666665  9999999999888877777654    346778888987632          1


Q ss_pred             CCCceeEEEecccccc
Q 026688          129 ASSSIDAVHAGAAIHC  144 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~  144 (235)
                      .-+..|+++.+..+..
T Consensus        83 ~~G~iDiLVNNAG~~~   98 (255)
T 4g81_D           83 EGIHVDILINNAGIQY   98 (255)
T ss_dssp             TTCCCCEEEECCCCCC
T ss_pred             HCCCCcEEEECCCCCC
Confidence            1257899998765543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=90.84  E-value=0.22  Score=40.27  Aligned_cols=42  Identities=21%  Similarity=0.132  Sum_probs=30.9

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYE  103 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~  103 (235)
                      ++.+|+-+|+|. |.....+++.. .+.|+++|.++..++.++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~~~  213 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS  213 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence            478999999986 65555555543 3589999999987776643

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=90.74  E-value=2.2  Score=32.32  Aligned_cols=90  Identities=14%  Similarity=0.174  Sum_probs=51.8

Q ss_pred             CeEEEecCCC-ch-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC-ceeEEEec
Q 026688           63 GNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS-SIDAVHAG  139 (235)
Q Consensus        63 ~~vLdiG~G~-G~-~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~D~i~~~  139 (235)
                      ++|.-||+|. |. ++..+.+.+...+|+++|.+++.++.+++    .+.    .. ....|..+.   .. ..|+|+..
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~----~~-~~~~~~~~~---~~~~aDvVila   69 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGI----ID-EGTTSIAKV---EDFSPDFVMLS   69 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTS----CS-EEESCGGGG---GGTCCSEEEEC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCC----cc-cccCCHHHH---hcCCCCEEEEc
Confidence            3688899886 43 34455555433479999999987776553    111    11 112233221   13 67999864


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      --...   ...++.++...++++..++.
T Consensus        70 vp~~~---~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           70 SPVRT---FREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             SCHHH---HHHHHHHHHHHSCTTCEEEE
T ss_pred             CCHHH---HHHHHHHHHhhCCCCcEEEE
Confidence            32221   23567778888888775443

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=90.72  E-value=0.36  Score=36.46  Aligned_cols=54  Identities=6%  Similarity=-0.033  Sum_probs=34.5

Q ss_pred             eeEEecccccC--CCCCCceeEEEeccccccc----C----------ChHHHHHHHHHhccCCcEEEEEE
Q 026688          116 FLLVRADISRL--PFASSSIDAVHAGAAIHCW----S----------SPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       116 ~~~~~~d~~~~--~~~~~~~D~i~~~~~l~~~----~----------~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ..++++|..+.  .++.+++|+|++.--...-    +          -....+.++.++|+|+|.+++..
T Consensus         5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (260)
T ss_dssp             SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            34667776442  2345688888875332211    1          11367788899999999998864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.65  E-value=1.8  Score=35.16  Aligned_cols=93  Identities=17%  Similarity=0.284  Sum_probs=59.8

Q ss_pred             CCeEEEecCCC-chHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeE
Q 026688           62 GGNIIDASCGS-GLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  135 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~  135 (235)
                      ..+|+-+|+|. |.... .|.+.+.  .|+++|.+++.++.+++.          .+.++.+|..+..    ......|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~--~vvvId~d~~~v~~~~~~----------g~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV--KMVVLDHDPDHIETLRKF----------GMKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEECCHHHHHHHHHT----------TCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHhC----------CCeEEEcCCCCHHHHHhcCCCccCE
Confidence            46799999875 43333 3333444  899999999998887642          3557888887632    22356888


Q ss_pred             EEecccccccCChH--HHHHHHHHhccCCcEEEEEEec
Q 026688          136 VHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       136 i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      |++..     ++..  ..+-...+.+.|...++.-...
T Consensus        72 viv~~-----~~~~~n~~i~~~ar~~~p~~~Iiara~~  104 (413)
T 3l9w_A           72 LINAI-----DDPQTNLQLTEMVKEHFPHLQIIARARD  104 (413)
T ss_dssp             EEECC-----SSHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             EEECC-----CChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            88532     3332  3445566677788777775543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=90.64  E-value=2.5  Score=31.91  Aligned_cols=85  Identities=13%  Similarity=0.147  Sum_probs=50.5

Q ss_pred             eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +|.-||+|. | .++..+.+.+.  +|+++|.+++.++.+.+    .+.    ... ...|..+.    ...|+|+..-.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~----~g~----~~~-~~~~~~~~----~~~D~vi~av~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVE----RQL----VDE-AGQDLSLL----QTAKIIFLCTP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH----TTS----CSE-EESCGGGG----TTCSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHh----CCC----Ccc-ccCCHHHh----CCCCEEEEECC
Confidence            678899886 4 34445556554  89999999987766543    111    111 22333322    45799886433


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEE
Q 026688          142 IHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       142 l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      -.   ....+++++...++|+..++
T Consensus        67 ~~---~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           67 IQ---LILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             HH---HHHHHHHHHGGGSCTTCEEE
T ss_pred             HH---HHHHHHHHHHhhCCCCCEEE
Confidence            22   12466777878888876543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=90.61  E-value=2.6  Score=31.73  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=50.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCC------------HHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYS------------ENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.+|.+            ++.++...+.+...    ..++.++.+|+.+.
T Consensus        13 gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~   86 (278)
T 3sx2_A           13 GKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI----GSRIVARQADVRDR   86 (278)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH----TCCEEEEECCTTCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc----CCeEEEEeCCCCCH
Confidence            577888887665   34556666665  89999976            66666655555443    34788899999763


Q ss_pred             C-----CC-----CCceeEEEecccccc
Q 026688          127 P-----FA-----SSSIDAVHAGAAIHC  144 (235)
Q Consensus       127 ~-----~~-----~~~~D~i~~~~~l~~  144 (235)
                      .     +.     -+..|+++.+..+..
T Consensus        87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~  114 (278)
T 3sx2_A           87 ESLSAALQAGLDELGRLDIVVANAGIAP  114 (278)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            2     10     147899998766543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=90.40  E-value=1.9  Score=33.07  Aligned_cols=103  Identities=18%  Similarity=0.164  Sum_probs=64.1

Q ss_pred             CCeEEEecCCC----c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC--
Q 026688           62 GGNIIDASCGS----G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--  129 (235)
Q Consensus        62 ~~~vLdiG~G~----G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--  129 (235)
                      ++++|-.|++.    | .++..|++.+.  +|+.+|.++...+.+.+.....     .++.++.+|+.+..     +.  
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~  102 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESL-----GVKLTVPCDVSDAESVDNMFKVL  102 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHH-----TCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHH
Confidence            57888888753    3 24556666665  8999999876555555544432     24678888987632     00  


Q ss_pred             ---CCceeEEEeccccccc---------CCh--------------HHHHHHHHHhccCCcEEEEEEec
Q 026688          130 ---SSSIDAVHAGAAIHCW---------SSP--------------STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       130 ---~~~~D~i~~~~~l~~~---------~~~--------------~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                         -+..|+++.+..+...         .+.              ..+++.+.+.++++|.++.....
T Consensus       103 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~  170 (296)
T 3k31_A          103 AEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYY  170 (296)
T ss_dssp             HHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             HHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEeh
Confidence               1478999987654321         111              13455666777778888876543

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=90.08  E-value=4.5  Score=30.03  Aligned_cols=75  Identities=19%  Similarity=0.271  Sum_probs=48.4

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.++.++..++...+.+...    ..++.++..|+.+..     +.    
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~   75 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQA----GGHAVAVKVDVSDRDQVFAAVEQARK   75 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            356777776554   33445555665  8999999987776665555433    236778888987632     00    


Q ss_pred             -CCceeEEEecccc
Q 026688          130 -SSSIDAVHAGAAI  142 (235)
Q Consensus       130 -~~~~D~i~~~~~l  142 (235)
                       -+..|+++.+...
T Consensus        76 ~~g~id~lv~nAg~   89 (256)
T 1geg_A           76 TLGGFDVIVNNAGV   89 (256)
T ss_dssp             HTTCCCEEEECCCC
T ss_pred             HhCCCCEEEECCCC
Confidence             1378999987654

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=90.04  E-value=3.1  Score=31.31  Aligned_cols=103  Identities=19%  Similarity=0.210  Sum_probs=63.5

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEe-CCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALD-YSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D-~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      ++++|-.|++.|   ..+..|++.+.  .|+.++ .++...+...+.+...    ..++.++..|+.+..     +.   
T Consensus        27 ~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~  100 (267)
T 3u5t_A           27 NKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAA----GGKALTAQADVSDPAAVRRLFATAE  100 (267)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            578888887765   34456666665  777764 4555666655555443    346888889987632     00   


Q ss_pred             --CCceeEEEecccccccCC-----h--------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          130 --SSSIDAVHAGAAIHCWSS-----P--------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 --~~~~D~i~~~~~l~~~~~-----~--------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                        -+..|+++.+..+.....     .              -.+++.+.+.++++|.++....
T Consensus       101 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  162 (267)
T 3u5t_A          101 EAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST  162 (267)
T ss_dssp             HHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence              147899998765433211     1              1245567777777888776553

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=89.97  E-value=2.5  Score=31.66  Aligned_cols=75  Identities=19%  Similarity=0.225  Sum_probs=46.7

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeC-CHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~-s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      +++||-.|++.|   .++..+++++.  +|++++. ++..++...+.+...    ..++.++.+|+.+..     +.   
T Consensus        21 ~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~   94 (274)
T 1ja9_A           21 GKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKL----GAQGVAIQADISKPSEVVALFDKAV   94 (274)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            567887776543   23344555554  8999998 776666655555443    236788889987632     10   


Q ss_pred             --CCceeEEEecccc
Q 026688          130 --SSSIDAVHAGAAI  142 (235)
Q Consensus       130 --~~~~D~i~~~~~l  142 (235)
                        -+..|+++.+...
T Consensus        95 ~~~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           95 SHFGGLDFVMSNSGM  109 (274)
T ss_dssp             HHHSCEEEEECCCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence              1368999976554

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=89.96  E-value=2.3  Score=33.82  Aligned_cols=93  Identities=8%  Similarity=0.013  Sum_probs=56.6

Q ss_pred             CCCCeEEEecCC--CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-----CCCCCc
Q 026688           60 VLGGNIIDASCG--SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PFASSS  132 (235)
Q Consensus        60 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~  132 (235)
                      .++.+||-.|++  .|..+..+++.. .++|+++. ++.-++.+++.    +     -..++...-.+.     ....+.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~v~~~t~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSR----G-----AEEVFDYRAPNLAQTIRTYTKNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT----T-----CSEEEETTSTTHHHHHHHHTTTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHc----C-----CcEEEECCCchHHHHHHHHccCC
Confidence            567899999983  578888887764 35888875 77777766542    1     111222111111     011245


Q ss_pred             eeEEEecccccccCChHHHHHHHHHhc-cCCcEEEEEE
Q 026688          133 IDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTT  169 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L-~pgG~li~~~  169 (235)
                      +|+|+-.-     .. ...+..+.+.| +++|+++...
T Consensus       232 ~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDCI-----TN-VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEESS-----CS-HHHHHHHHHHSCTTCEEEEESS
T ss_pred             ccEEEECC-----Cc-hHHHHHHHHHhhcCCCEEEEEe
Confidence            89998422     22 24577788888 6999988754

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.95  E-value=4.2  Score=31.10  Aligned_cols=78  Identities=24%  Similarity=0.312  Sum_probs=49.0

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.++.+++.++...+.+...+. ...++.++.+|+.+..     +.    
T Consensus        26 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           26 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGV-PAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            567777776554   33445555555  899999998877766655544210 0115788889987632     10    


Q ss_pred             -CCceeEEEecccc
Q 026688          130 -SSSIDAVHAGAAI  142 (235)
Q Consensus       130 -~~~~D~i~~~~~l  142 (235)
                       -+..|+++.+...
T Consensus       103 ~~g~iD~lvnnAG~  116 (297)
T 1xhl_A          103 KFGKIDILVNNAGA  116 (297)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence             1368999987654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=89.85  E-value=4.8  Score=30.40  Aligned_cols=103  Identities=15%  Similarity=0.232  Sum_probs=60.2

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHH-HHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSEN-MLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~-~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      ++++|-.|++.|   ..+..|++.+.  +|++++.++. ..+...+.+...    ..++.++..|+.+..     +.   
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~  102 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKN----GSDAACVKANVGVVEDIVRMFEEAV  102 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHH
Confidence            567777777654   23344555554  8999988754 344444444332    236778888886532     00   


Q ss_pred             --CCceeEEEecccccccC-----ChH--------------HHHHHHHHhccCCcEEEEEEe
Q 026688          130 --SSSIDAVHAGAAIHCWS-----SPS--------------TGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       130 --~~~~D~i~~~~~l~~~~-----~~~--------------~~l~~~~~~L~pgG~li~~~~  170 (235)
                        -+..|+++.+.......     +.+              .+++.+.+.++.+|.++....
T Consensus       103 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          103 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence              13689999876543321     111              234666677767788777654

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=89.82  E-value=4.2  Score=29.66  Aligned_cols=78  Identities=18%  Similarity=0.169  Sum_probs=51.3

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   .++..+++.+.  .|+.++.+++.++...+.+....   ..++.+..+|+.+..     +.    
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~   76 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ---GVEVFYHHLDVSKAESVEEFSKKVLE   76 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTCHHHHHHHCC-HHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCeEEEEEeccCCHHHHHHHHHHHHH
Confidence            457777777654   33445556665  89999999887777666554221   347888899997632     11    


Q ss_pred             -CCceeEEEecccccc
Q 026688          130 -SSSIDAVHAGAAIHC  144 (235)
Q Consensus       130 -~~~~D~i~~~~~l~~  144 (235)
                       -+..|+++.+..+.+
T Consensus        77 ~~g~id~li~~Ag~~~   92 (235)
T 3l77_A           77 RFGDVDVVVANAGLGY   92 (235)
T ss_dssp             HHSSCSEEEECCCCCC
T ss_pred             hcCCCCEEEECCcccc
Confidence             136899998766543

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=89.78  E-value=1.3  Score=30.59  Aligned_cols=111  Identities=15%  Similarity=0.149  Sum_probs=64.1

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF  128 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~  128 (235)
                      +.+....+... +.-|||+|-|.|..=-++.+..|+..++++|-.-..          ++....+.-.++.+|+.+. +.
T Consensus        30 L~~a~~~v~~~-~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~----------hp~~~P~~e~~ilGdi~~tL~~   98 (174)
T 3iht_A           30 LEHAIAQTAGL-SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS----------HPDSTPPEAQLILGDIRETLPA   98 (174)
T ss_dssp             HHHHHHHTTTC-CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC----------CGGGCCCGGGEEESCHHHHHHH
T ss_pred             HHHHHHHhcCC-CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc----------CCCCCCchHheecccHHHHHHH
Confidence            34444444433 578999999999999999999999999999962110          0000022345677777552 21


Q ss_pred             C----CCceeEEEecccccccCChH----HHHHHHHHhccCCcEEEEEEec
Q 026688          129 A----SSSIDAVHAGAAIHCWSSPS----TGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       129 ~----~~~~D~i~~~~~l~~~~~~~----~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .    ....-++-+....++-....    .+-..+..+|.|||.++-..+.
T Consensus        99 ~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl  149 (174)
T 3iht_A           99 TLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM  149 (174)
T ss_dssp             HHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred             HHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            0    12233333333333211111    2234567789999988765443

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=89.78  E-value=7.4  Score=32.02  Aligned_cols=95  Identities=19%  Similarity=0.262  Sum_probs=57.2

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh-------cC----CC-CCCCeeEEecccccCC
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------ES----NF-PKENFLLVRADISRLP  127 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~----~~-~~~~~~~~~~d~~~~~  127 (235)
                      ..+|.-||+|. | .++..+++.+.  .|+++|.+++.++.+++.+..       .+    .. ......+ ..|...  
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~--  111 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE--  111 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG--
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH--
Confidence            46799999997 4 44556666665  899999999888877653321       00    00 0011222 344321  


Q ss_pred             CCCCceeEEEecccccccCCh---HHHHHHHHHhccCCcEEEE
Q 026688          128 FASSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~  167 (235)
                        -...|+|+..-.    .+.   ..+++++...++|+..++.
T Consensus       112 --~~~aDlVIeaVp----e~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          112 --LSTVDLVVEAVF----EDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             --GTTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             --HCCCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence              245799885432    122   4677888888988766553

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=89.70  E-value=4.2  Score=31.09  Aligned_cols=99  Identities=10%  Similarity=0.042  Sum_probs=53.4

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---ccccCCCCCCceeEEE
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISRLPFASSSIDAVH  137 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~D~i~  137 (235)
                      .+|.-+|+|. | .++..+++.+.  +|+++|.+++.++..++.-.....  .........   +..+..-.-..+|+|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN--DVTLIDQWPAHIEAIRKNGLIADF--NGEEVVANLPIFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHCEEEEE--TTEEEEECCCEECGGGCCTTSCCCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHhCCEEEEe--CCCeeEecceeecchhhcccCCCCCEEE
Confidence            4799999986 4 44455666665  899999998877766543100000  000000000   1111110012689988


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      ..---..   ...+++.+...++|+..++..
T Consensus        80 ~~v~~~~---~~~v~~~l~~~l~~~~~iv~~  107 (316)
T 2ew2_A           80 ALTKAQQ---LDAMFKAIQPMITEKTYVLCL  107 (316)
T ss_dssp             ECSCHHH---HHHHHHHHGGGCCTTCEEEEC
T ss_pred             EEecccc---HHHHHHHHHHhcCCCCEEEEe
Confidence            6443221   246777888888887655543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.46  E-value=2.4  Score=31.70  Aligned_cols=77  Identities=19%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             CCeEEEecC-CCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           62 GGNIIDASC-GSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        62 ~~~vLdiG~-G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      ++++|-.|+ |.|   .++..+++.+.  .|+.++.++..++...+.+...+   ..++.++..|+.+..     +.   
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG---LGRVEAVVCDVTSTEAVDALITQTV   96 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC---SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC---CCceEEEEeCCCCHHHHHHHHHHHH
Confidence            678888887 554   34556666665  89999999988888777765432   357899999997632     00   


Q ss_pred             --CCceeEEEeccccc
Q 026688          130 --SSSIDAVHAGAAIH  143 (235)
Q Consensus       130 --~~~~D~i~~~~~l~  143 (235)
                        .+..|+++.+..+.
T Consensus        97 ~~~g~id~li~~Ag~~  112 (266)
T 3o38_A           97 EKAGRLDVLVNNAGLG  112 (266)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHhCCCcEEEECCCcC
Confidence              13689999876543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=89.46  E-value=2.5  Score=31.79  Aligned_cols=75  Identities=29%  Similarity=0.357  Sum_probs=54.2

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++.+|--|++.|   ..+..|++.+.  .|..+|.+++.++...+.+...    ..++.++.+|+.+..          -
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~~   80 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGM----GKEVLGVKADVSKKKDVEEFVRRTFE   80 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            677888787776   34455666665  9999999999988888877665    346888999997632          0


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      .-+..|+++.+..+
T Consensus        81 ~~G~iDiLVNNAGi   94 (254)
T 4fn4_A           81 TYSRIDVLCNNAGI   94 (254)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCcc
Confidence            11578999987653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=89.39  E-value=1.5  Score=33.37  Aligned_cols=97  Identities=13%  Similarity=0.110  Sum_probs=55.9

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc---------CCCCC------CCeeEEeccccc
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPK------ENFLLVRADISR  125 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------~~~~~------~~~~~~~~d~~~  125 (235)
                      ++|.-||+|. | .++..+++.+.  +|+.+|.+++.++.+.+.+...         .....      .++. ...|..+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~-~~~~~~~   81 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIR-YSDDLAQ   81 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCE-EESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeE-EeCCHHH
Confidence            5788899986 3 44555666665  8999999999888887653211         00000      0122 2233322


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEE
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      .   -...|+|+..-.-. ......+++++...++|+..++
T Consensus        82 ~---~~~aDlVi~av~~~-~~~~~~v~~~l~~~~~~~~il~  118 (283)
T 4e12_A           82 A---VKDADLVIEAVPES-LDLKRDIYTKLGELAPAKTIFA  118 (283)
T ss_dssp             H---TTTCSEEEECCCSC-HHHHHHHHHHHHHHSCTTCEEE
T ss_pred             H---hccCCEEEEeccCc-HHHHHHHHHHHHhhCCCCcEEE
Confidence            1   24579988432110 0112467888888898876554

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=89.14  E-value=0.44  Score=37.62  Aligned_cols=98  Identities=14%  Similarity=0.054  Sum_probs=54.1

Q ss_pred             hhcCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec--cccc-C-CC
Q 026688           55 GYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA--DISR-L-PF  128 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~  128 (235)
                      +.....++.+||-.|+ | .|..+..+++......|++++ ++.-.+.++  +   +   ..  .++..  |..+ . ..
T Consensus       136 ~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~---g---a~--~~~~~~~~~~~~~~~~  204 (349)
T 4a27_A          136 EVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--D---S---VT--HLFDRNADYVQEVKRI  204 (349)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--G---G---SS--EEEETTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--c---C---Cc--EEEcCCccHHHHHHHh
Confidence            4455667899999998 3 377777777754345888888 554444443  1   1   11  11211  1111 0 11


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ..+.+|+|+-...-.       .+..+.++|+++|.+++...
T Consensus       205 ~~~g~Dvv~d~~g~~-------~~~~~~~~l~~~G~~v~~G~  239 (349)
T 4a27_A          205 SAEGVDIVLDCLCGD-------NTGKGLSLLKPLGTYILYGS  239 (349)
T ss_dssp             CTTCEEEEEEECC--------------CTTEEEEEEEEEEC-
T ss_pred             cCCCceEEEECCCch-------hHHHHHHHhhcCCEEEEECC
Confidence            235799999432211       24678899999999987653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=89.11  E-value=2.8  Score=31.11  Aligned_cols=78  Identities=18%  Similarity=0.258  Sum_probs=53.0

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.++.+++.++...+.+...... ..++.++..|+.+..     +     
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKH-VQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTT-SCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccc-cCcceEEeccCCCHHHHHHHHHHHHH
Confidence            567888887765   34556666665  8999999998888777766543210 246788889987632     0     


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      .-+..|+++.+..+
T Consensus        84 ~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           84 KYGAVDILVNAAAM   97 (250)
T ss_dssp             HHCCEEEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence            01478999987655

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=89.01  E-value=4.2  Score=31.49  Aligned_cols=95  Identities=13%  Similarity=0.158  Sum_probs=55.6

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeE-----EecccccCCCCCCcee
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL-----VRADISRLPFASSSID  134 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~-----~~~d~~~~~~~~~~~D  134 (235)
                      ..+|.-+|+|. | .++..|++.+.  .|+.+ .+++.++..++.-....   .....+     ...|...    ...+|
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~--~V~l~-~~~~~~~~i~~~g~~~~---~~~~~~~~~~~~~~~~~~----~~~~D   88 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGH--EVILI-ARPQHVQAIEATGLRLE---TQSFDEQVKVSASSDPSA----VQGAD   88 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTC--EEEEE-CCHHHHHHHHHHCEEEE---CSSCEEEECCEEESCGGG----GTTCS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC--eEEEE-EcHhHHHHHHhCCeEEE---cCCCcEEEeeeeeCCHHH----cCCCC
Confidence            57899999996 4 45556666665  88888 88877777665311100   001111     0112211    24689


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +|+..---.   +...+++.+...++|+..++...
T Consensus        89 ~vilavk~~---~~~~~l~~l~~~l~~~~~iv~~~  120 (318)
T 3hwr_A           89 LVLFCVKST---DTQSAALAMKPALAKSALVLSLQ  120 (318)
T ss_dssp             EEEECCCGG---GHHHHHHHHTTTSCTTCEEEEEC
T ss_pred             EEEEEcccc---cHHHHHHHHHHhcCCCCEEEEeC
Confidence            988643333   23577888888888887655443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=88.56  E-value=3.7  Score=31.21  Aligned_cols=84  Identities=15%  Similarity=0.152  Sum_probs=50.7

Q ss_pred             CeEEEecC-CC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           63 GNIIDASC-GS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        63 ~~vLdiG~-G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .+|.-||+ |. | .++..+.+.+.  +|+++|.+++.++.+.+    .+      +..  .+..+.   ....|+|+..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~----~g------~~~--~~~~~~---~~~aDvVi~a   74 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEGRDRLQG----MG------IPL--TDGDGW---IDEADVVVLA   74 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHHHHHHHH----TT------CCC--CCSSGG---GGTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHh----cC------CCc--CCHHHH---hcCCCEEEEc
Confidence            58999999 85 4 44555666654  89999999887766654    11      111  122221   2457999864


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      -.-..   ...+++.+...++|+..++
T Consensus        75 v~~~~---~~~v~~~l~~~l~~~~ivv   98 (286)
T 3c24_A           75 LPDNI---IEKVAEDIVPRVRPGTIVL   98 (286)
T ss_dssp             SCHHH---HHHHHHHHGGGSCTTCEEE
T ss_pred             CCchH---HHHHHHHHHHhCCCCCEEE
Confidence            33222   2456677777777765444

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=88.40  E-value=5.1  Score=31.52  Aligned_cols=96  Identities=11%  Similarity=0.069  Sum_probs=52.0

Q ss_pred             cCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEE-EEeCCHH---HHHHHHHHhhhcCCCCCCCeeEEec------ccc
Q 026688           57 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVV-ALDYSEN---MLKQCYEFVQQESNFPKENFLLVRA------DIS  124 (235)
Q Consensus        57 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~-~~D~s~~---~~~~a~~~~~~~~~~~~~~~~~~~~------d~~  124 (235)
                      ....++.+||-.|+ | .|..+..+++.. .++++ .++.++.   ..+.+++    .+   ..  .++..      ++.
T Consensus       163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~----lG---a~--~vi~~~~~~~~~~~  232 (357)
T 1zsy_A          163 EQLQPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDIQKLSDRLKS----LG---AE--HVITEEELRRPEMK  232 (357)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCHHHHHHHHHH----TT---CS--EEEEHHHHHSGGGG
T ss_pred             hccCCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccchHHHHHHHHh----cC---Cc--EEEecCcchHHHHH
Confidence            45667899999997 4 477777777753 23554 4444432   2344432    21   11  12211      111


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +..-....+|+|+-.-     ..+ . .....++|+++|.++...
T Consensus       233 ~~~~~~~~~Dvvid~~-----g~~-~-~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          233 NFFKDMPQPRLALNCV-----GGK-S-STELLRQLARGGTMVTYG  270 (357)
T ss_dssp             GTTSSSCCCSEEEESS-----CHH-H-HHHHHTTSCTTCEEEECC
T ss_pred             HHHhCCCCceEEEECC-----CcH-H-HHHHHHhhCCCCEEEEEe
Confidence            1110112489988432     211 2 345789999999998763

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=88.19  E-value=5.5  Score=30.17  Aligned_cols=76  Identities=12%  Similarity=0.115  Sum_probs=48.2

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCH-HHHHHHHHHhhhcCCCCCCCeeEEeccccc----CC-----C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSE-NMLKQCYEFVQQESNFPKENFLLVRADISR----LP-----F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~~-----~  128 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.++.++ ..++...+.+....   ..++.++.+|+.+    ..     +
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~~~Dv~~~~~~~~~v~~~~   97 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNSAEAAVSLADELNKER---SNTAVVCQADLTNSNVLPASCEEII   97 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSCHHHHHHHHHHHHHHS---TTCEEEEECCCSCSTTHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhhc---CCceEEEEeecCCccCCHHHHHHHH
Confidence            567887777655   33445566665  899999987 66665555543111   3467888899876    21     0


Q ss_pred             -----CCCceeEEEecccc
Q 026688          129 -----ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 -----~~~~~D~i~~~~~l  142 (235)
                           .-+..|+++.+..+
T Consensus        98 ~~~~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A           98 NSCFRAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence                 01368999987654

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=87.93  E-value=3.4  Score=30.95  Aligned_cols=103  Identities=13%  Similarity=0.121  Sum_probs=59.8

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCC---HHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C--
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYS---ENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F--  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s---~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--  128 (235)
                      ++++|-.|++.|   ..+..|++.+.  +|+.++.+   .+.++...+.+...    ..++.++..|+.+..     +  
T Consensus        11 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~   84 (262)
T 3ksu_A           11 NKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQ----GAKVALYQSDLSNEEEVAKLFDF   84 (262)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTT----TCEEEEEECCCCSHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHH
Confidence            577887787665   22334444444  88888764   34455544444433    346888899987632     0  


Q ss_pred             ---CCCceeEEEecccccccCC-----hH--------------HHHHHHHHhccCCcEEEEEEe
Q 026688          129 ---ASSSIDAVHAGAAIHCWSS-----PS--------------TGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 ---~~~~~D~i~~~~~l~~~~~-----~~--------------~~l~~~~~~L~pgG~li~~~~  170 (235)
                         .-+..|+++.+........     .+              .+++.+.+.++++|.++....
T Consensus        85 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS  148 (262)
T 3ksu_A           85 AEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT  148 (262)
T ss_dssp             HHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence               0147899998765432211     11              234556666667787776543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=87.79  E-value=2.7  Score=32.31  Aligned_cols=85  Identities=14%  Similarity=0.130  Sum_probs=50.7

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ..+|.-||+|. | .++..+++.+.  +|+++|.+++.++.+.+.    +      ......+..+.   ....|+|+..
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~~~~~----g------~~~~~~~~~e~---~~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL--STWGADLNPQACANLLAE----G------ACGAAASAREF---AGVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT----T------CSEEESSSTTT---TTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHc----C------CccccCCHHHH---HhcCCEEEEE
Confidence            46799999986 4 44556666665  899999999877766542    1      11223344332   2456888853


Q ss_pred             ccccccCCh---HHHH---HHHHHhccCCcEEE
Q 026688          140 AAIHCWSSP---STGV---AEISRVLRPGGVFV  166 (235)
Q Consensus       140 ~~l~~~~~~---~~~l---~~~~~~L~pgG~li  166 (235)
                           ++++   ..++   +.+...++||..++
T Consensus        72 -----vp~~~~~~~v~~~~~~l~~~l~~g~ivv   99 (303)
T 3g0o_A           72 -----VVNAAQVRQVLFGEDGVAHLMKPGSAVM   99 (303)
T ss_dssp             -----CSSHHHHHHHHC--CCCGGGSCTTCEEE
T ss_pred             -----CCCHHHHHHHHhChhhHHhhCCCCCEEE
Confidence                 3333   2233   44556677766554

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=87.76  E-value=5.6  Score=30.08  Aligned_cols=75  Identities=17%  Similarity=0.269  Sum_probs=50.0

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCC----------------HHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYS----------------ENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      ++++|-.|++.|   ..+..|++.+.  +|+.+|.+                ++.++...+.+...    ..++.++..|
T Consensus        11 ~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D   84 (286)
T 3uve_A           11 GKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH----NRRIVTAEVD   84 (286)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT----TCCEEEEECC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc----CCceEEEEcC
Confidence            578888888765   34556666665  89999887                56666655555443    3468888999


Q ss_pred             cccCC-----C-----CCCceeEEEecccc
Q 026688          123 ISRLP-----F-----ASSSIDAVHAGAAI  142 (235)
Q Consensus       123 ~~~~~-----~-----~~~~~D~i~~~~~l  142 (235)
                      +.+..     +     .-+..|+++.+..+
T Consensus        85 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           85 VRDYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            97632     0     01478999987654

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=87.72  E-value=4.2  Score=30.42  Aligned_cols=88  Identities=11%  Similarity=0.096  Sum_probs=51.9

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      ..+|.-||+|. | .++..+.+.+.  . |.++|.+++.++.+.+..         .+.. ..|..+.   ....|+|+.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~--~~v~~~~~~~~~~~~~~~~~---------g~~~-~~~~~~~---~~~~Dvvi~   74 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGF--RIVQVYSRTEESARELAQKV---------EAEY-TTDLAEV---NPYAKLYIV   74 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTC--CEEEEECSSHHHHHHHHHHT---------TCEE-ESCGGGS---CSCCSEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHc---------CCce-eCCHHHH---hcCCCEEEE
Confidence            35799999985 4 34445555554  5 899999998777665532         1222 2333332   135799986


Q ss_pred             cccccccCChHHHHHHHHHhccCCcEEEE
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      .-.-..   ...+++.+...+++|..++-
T Consensus        75 av~~~~---~~~v~~~l~~~~~~~~ivv~  100 (266)
T 3d1l_A           75 SLKDSA---FAELLQGIVEGKREEALMVH  100 (266)
T ss_dssp             CCCHHH---HHHHHHHHHTTCCTTCEEEE
T ss_pred             ecCHHH---HHHHHHHHHhhcCCCcEEEE
Confidence            433221   14566777777777654443

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=87.66  E-value=5.7  Score=30.34  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=50.1

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCC------------HHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYS------------ENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+++|.+            ++.++...+.+...    ..++.++..|+.+.
T Consensus        28 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~  101 (299)
T 3t7c_A           28 GKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL----GRRIIASQVDVRDF  101 (299)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT----TCCEEEEECCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhc----CCceEEEECCCCCH
Confidence            578888888765   34455666665  89999986            56666655555443    34788899999763


Q ss_pred             C-----C-----CCCceeEEEecccc
Q 026688          127 P-----F-----ASSSIDAVHAGAAI  142 (235)
Q Consensus       127 ~-----~-----~~~~~D~i~~~~~l  142 (235)
                      .     +     .-+..|+++.+...
T Consensus       102 ~~v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          102 DAMQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            2     0     01478999977654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=87.64  E-value=3.1  Score=30.75  Aligned_cols=75  Identities=21%  Similarity=0.237  Sum_probs=52.4

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.+|.+++.++...+.+...    ..++.++..|+.+..     +.    
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVAD----GGTAISVAVDVSDPESAKAMADRTLA   82 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            578888887665   34555666665  8999999998888877766553    346788889987632     00    


Q ss_pred             -CCceeEEEecccc
Q 026688          130 -SSSIDAVHAGAAI  142 (235)
Q Consensus       130 -~~~~D~i~~~~~l  142 (235)
                       -+..|+++.+..+
T Consensus        83 ~~g~id~li~~Ag~   96 (253)
T 3qiv_A           83 EFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence             1378999987654

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=87.60  E-value=7.4  Score=30.33  Aligned_cols=90  Identities=12%  Similarity=-0.043  Sum_probs=49.5

Q ss_pred             CCeEEEecCCC-chHHHHHHH-cCCCceEE-EEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           62 GGNIIDASCGS-GLFSRIFAK-SGLFSLVV-ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~~~~l~~-~~~~~~v~-~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      ..+|.-||||. |........ ..+..+++ .+|.+++..+...+.+         .+.....|..++ +.....|+|+.
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~---------g~~~~~~~~~~~-l~~~~~D~V~i   77 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL---------GVETTYTNYKDM-IDTENIDAIFI   77 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT---------CCSEEESCHHHH-HTTSCCSEEEE
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh---------CCCcccCCHHHH-hcCCCCCEEEE
Confidence            46899999985 544333333 44555654 6799987665443321         121123444432 12346899985


Q ss_pred             cccccccCChHHHHHHHHHhccCCcEEEE
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      ...-      ......+..+|+.|-.+++
T Consensus        78 ~tp~------~~h~~~~~~al~~G~~v~~  100 (346)
T 3cea_A           78 VAPT------PFHPEMTIYAMNAGLNVFC  100 (346)
T ss_dssp             CSCG------GGHHHHHHHHHHTTCEEEE
T ss_pred             eCCh------HhHHHHHHHHHHCCCEEEE
Confidence            4321      1224555667777766665

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=87.39  E-value=4.2  Score=31.11  Aligned_cols=89  Identities=9%  Similarity=0.020  Sum_probs=50.1

Q ss_pred             CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-cccccCCCCCCceeEEE
Q 026688           60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVH  137 (235)
Q Consensus        60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~i~  137 (235)
                      ..+++|+-+|+|. |......++.. ..+|+++|.++...+.+.+    .      ...... .++.+.   -...|+|+
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~~----~------g~~~~~~~~l~~~---l~~aDvVi  218 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAAL-GAKVKVGARESDLLARIAE----M------GMEPFHISKAAQE---LRDVDVCI  218 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----T------TSEEEEGGGHHHH---TTTCSEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH----C------CCeecChhhHHHH---hcCCCEEE
Confidence            3578999999875 44443333332 2499999999865544432    1      122221 122221   24679999


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      .....+.+ +.     ...+.++||+.++-.
T Consensus       219 ~~~p~~~i-~~-----~~l~~mk~~~~lin~  243 (293)
T 3d4o_A          219 NTIPALVV-TA-----NVLAEMPSHTFVIDL  243 (293)
T ss_dssp             ECCSSCCB-CH-----HHHHHSCTTCEEEEC
T ss_pred             ECCChHHh-CH-----HHHHhcCCCCEEEEe
Confidence            76544322 22     345567898876643

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=87.36  E-value=5.1  Score=27.07  Aligned_cols=97  Identities=12%  Similarity=0.011  Sum_probs=54.6

Q ss_pred             CCeEEEecCCC-ch-HHHHHHHcCCCceEEEEeCC-HHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCcee
Q 026688           62 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSID  134 (235)
Q Consensus        62 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D  134 (235)
                      ..+|+-+|+|. |. +...|.+.+.  .|+++|.+ ++..+......       ...+.++.+|..+..    ..-...|
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~-------~~~~~~i~gd~~~~~~l~~a~i~~ad   73 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRL-------GDNADVIPGDSNDSSVLKKAGIDRCR   73 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHH-------CTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhh-------cCCCeEEEcCCCCHHHHHHcChhhCC
Confidence            45788888764 32 2233444444  89999997 45444443322       224778888876531    1235688


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +|++...-.   .....+....+.+.|...++....
T Consensus        74 ~vi~~~~~d---~~n~~~~~~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           74 AILALSDND---ADNAFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             EEEECSSCH---HHHHHHHHHHHHHTSSSCEEEECS
T ss_pred             EEEEecCCh---HHHHHHHHHHHHHCCCCEEEEEEC
Confidence            888643211   112344555666667777766443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=87.33  E-value=5.2  Score=30.69  Aligned_cols=90  Identities=11%  Similarity=0.064  Sum_probs=51.0

Q ss_pred             CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-cccccCCCCCCceeEEE
Q 026688           60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVH  137 (235)
Q Consensus        60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~i~  137 (235)
                      ..+++|+-+|+|. |......++.. ..+|+++|.++...+.+.+    .      .+.... .++.+.   -...|+|+
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~~~~~~~~~~----~------g~~~~~~~~l~~~---l~~aDvVi  220 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAAL-GANVKVGARSSAHLARITE----M------GLVPFHTDELKEH---VKDIDICI  220 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----T------TCEEEEGGGHHHH---STTCSEEE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----C------CCeEEchhhHHHH---hhCCCEEE
Confidence            3578999999975 44433333332 3499999999865444332    1      122221 222221   24679999


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .....+.+ +.     ...+.++||+.++-..
T Consensus       221 ~~~p~~~i-~~-----~~~~~mk~g~~lin~a  246 (300)
T 2rir_A          221 NTIPSMIL-NQ-----TVLSSMTPKTLILDLA  246 (300)
T ss_dssp             ECCSSCCB-CH-----HHHTTSCTTCEEEECS
T ss_pred             ECCChhhh-CH-----HHHHhCCCCCEEEEEe
Confidence            76655322 22     3456789987665433

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=87.26  E-value=1.1  Score=35.28  Aligned_cols=90  Identities=3%  Similarity=-0.081  Sum_probs=53.1

Q ss_pred             CeEEEe-cCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------CCCCcee
Q 026688           63 GNIIDA-SCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FASSSID  134 (235)
Q Consensus        63 ~~vLdi-G~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~D  134 (235)
                      .+||-. |+| .|..+..+++.. .++|+++|.+++-++.+++.    +   . . .++..+-.+..      .....+|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~~----G---a-~-~~~~~~~~~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLKDI----G---A-A-HVLNEKAPDFEATLREVMKAEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHHHH----T---C-S-EEEETTSTTHHHHHHHHHHHHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C---C-C-EEEECCcHHHHHHHHHHhcCCCCc
Confidence            466654 443 366666666653 34999999999888887652    1   1 1 12211111110      0113689


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +|+-...-       ..+..+.++|+++|.++...
T Consensus       236 ~vid~~g~-------~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          236 IFLDAVTG-------PLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             EEEESSCH-------HHHHHHHHHSCTTCEEEECC
T ss_pred             EEEECCCC-------hhHHHHHhhhcCCCEEEEEe
Confidence            99854332       23477889999999999865

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=87.24  E-value=7.6  Score=28.99  Aligned_cols=73  Identities=27%  Similarity=0.371  Sum_probs=47.0

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   .++..+++.+.  +|+.++.+++.++...+.+       ..++.++..|+.+..     +.    
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~   76 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAAL-------EAEAIAVVADVSDPKAVEAVFAEALE   76 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTC-------CSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------cCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            567887777654   33445555665  8999999987666554432       135778888987632     00    


Q ss_pred             -CCceeEEEeccccc
Q 026688          130 -SSSIDAVHAGAAIH  143 (235)
Q Consensus       130 -~~~~D~i~~~~~l~  143 (235)
                       -+..|+++.+....
T Consensus        77 ~~g~iD~lvnnAg~~   91 (263)
T 2a4k_A           77 EFGRLHGVAHFAGVA   91 (263)
T ss_dssp             HHSCCCEEEEGGGGT
T ss_pred             HcCCCcEEEECCCCC
Confidence             13679999876543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=87.21  E-value=6.9  Score=30.71  Aligned_cols=92  Identities=15%  Similarity=0.070  Sum_probs=52.7

Q ss_pred             CCeEEEecCCC-ch--HHHHHHHcCCCceEE-EEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           62 GGNIIDASCGS-GL--FSRIFAKSGLFSLVV-ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~-G~--~~~~l~~~~~~~~v~-~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ..+|.-||||. |.  ....+. ..+..+++ .+|.+++..+...+..         .+... .|..++ +.....|+|+
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~-~~~~~~l~av~d~~~~~~~~~a~~~---------g~~~~-~~~~~l-l~~~~~D~V~   94 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALE-AEPLTEVTAIASRRWDRAKRFTERF---------GGEPV-EGYPAL-LERDDVDAVY   94 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHH-HCTTEEEEEEEESSHHHHHHHHHHH---------CSEEE-ESHHHH-HTCTTCSEEE
T ss_pred             ceEEEEEcCcHHHHHHHHHHHH-hCCCeEEEEEEcCCHHHHHHHHHHc---------CCCCc-CCHHHH-hcCCCCCEEE
Confidence            46899999985 54  233444 34556666 6699887655544432         12232 555543 2245689998


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ....      ...-...+..+|+.|-.+++.-+.
T Consensus        95 i~tp------~~~h~~~~~~al~aGk~Vl~EKP~  122 (350)
T 3rc1_A           95 VPLP------AVLHAEWIDRALRAGKHVLAEKPL  122 (350)
T ss_dssp             ECCC------GGGHHHHHHHHHHTTCEEEEESSS
T ss_pred             ECCC------cHHHHHHHHHHHHCCCcEEEeCCC
Confidence            5321      112245566677777777765554

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=87.16  E-value=4.4  Score=30.29  Aligned_cols=75  Identities=20%  Similarity=0.175  Sum_probs=53.0

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|-.|++.|   ..+..|++.+.  +|+.++.+++.++...+.+...    ..++.++..|+.+..     +     
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDT----GRRALSVGTDITDDAQVAHLVDETMK   84 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            578888888765   34556666665  8999999998888777766554    346888999997632     0     


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      .-+..|+++.+...
T Consensus        85 ~~g~id~lv~nAg~   98 (264)
T 3ucx_A           85 AYGRVDVVINNAFR   98 (264)
T ss_dssp             HTSCCSEEEECCCS
T ss_pred             HcCCCcEEEECCCC
Confidence            01478999977543

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=87.09  E-value=7  Score=28.38  Aligned_cols=72  Identities=17%  Similarity=0.137  Sum_probs=46.2

Q ss_pred             CeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-------CCCCc
Q 026688           63 GNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------FASSS  132 (235)
Q Consensus        63 ~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~  132 (235)
                      +++|-.|++.|   .++..+++.+.  +|+.++.++..++...+.+       ..++.+...|+.+..       .-...
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~   72 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCL-------SNNVGYRARDLASHQEVEQLFEQLDSI   72 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTC-------SSCCCEEECCTTCHHHHHHHHHSCSSC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH-------hhccCeEeecCCCHHHHHHHHHHHhhc
Confidence            35777777655   33445555665  8999999988777665543       236778888987632       11234


Q ss_pred             eeEEEeccccc
Q 026688          133 IDAVHAGAAIH  143 (235)
Q Consensus       133 ~D~i~~~~~l~  143 (235)
                      +|+++.+....
T Consensus        73 ~d~lv~~Ag~~   83 (230)
T 3guy_A           73 PSTVVHSAGSG   83 (230)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEEeCCcC
Confidence            59999776543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=86.98  E-value=3.9  Score=31.34  Aligned_cols=77  Identities=22%  Similarity=0.208  Sum_probs=54.3

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      .++++|-.|++.|   .++..+++.+.  .|+.++.++..++.+.+.+...    ..++.++..|+.+..     +.   
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~  103 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQ----GFDAHGVVCDVRHLDEMVRLADEAF  103 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHH
Confidence            4678888888765   34455666665  8999999998888877776554    346888999997632     00   


Q ss_pred             --CCceeEEEeccccc
Q 026688          130 --SSSIDAVHAGAAIH  143 (235)
Q Consensus       130 --~~~~D~i~~~~~l~  143 (235)
                        .+..|+++.+..+.
T Consensus       104 ~~~g~id~lvnnAg~~  119 (301)
T 3tjr_A          104 RLLGGVDVVFSNAGIV  119 (301)
T ss_dssp             HHHSSCSEEEECCCCC
T ss_pred             HhCCCCCEEEECCCcC
Confidence              13789999876543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=86.94  E-value=2.4  Score=31.61  Aligned_cols=76  Identities=12%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C----C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----A  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----~  129 (235)
                      ++++|-.|++.|   .++..+++.+.  +|+.+|.++..++...+.+...    ..++.++.+|+.+..     +    .
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAA----GGRIVARSLDARNEDEVTAFLNAADA   80 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEECcCCCHHHHHHHHHHHHh
Confidence            567888887765   34455666665  8999999988887777766554    346888999987632     0    0


Q ss_pred             CCceeEEEeccccc
Q 026688          130 SSSIDAVHAGAAIH  143 (235)
Q Consensus       130 ~~~~D~i~~~~~l~  143 (235)
                      .+..|+++.+....
T Consensus        81 ~g~id~lv~nAg~~   94 (252)
T 3h7a_A           81 HAPLEVTIFNVGAN   94 (252)
T ss_dssp             HSCEEEEEECCCCC
T ss_pred             hCCceEEEECCCcC
Confidence            14789999876653

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=86.84  E-value=1.1  Score=35.53  Aligned_cols=97  Identities=10%  Similarity=0.081  Sum_probs=54.1

Q ss_pred             cCCCCC-CeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHH----HHHHHHHhhhcCCCCCCCeeEEec------cc
Q 026688           57 LKPVLG-GNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENM----LKQCYEFVQQESNFPKENFLLVRA------DI  123 (235)
Q Consensus        57 ~~~~~~-~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~------d~  123 (235)
                      ....++ .+||-.|+ | .|..+..+++.. .++++++..+++.    .+.+++    .+   . . .++..      |+
T Consensus       162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~----lG---a-~-~vi~~~~~~~~~~  231 (364)
T 1gu7_A          162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKE----LG---A-T-QVITEDQNNSREF  231 (364)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHH----HT---C-S-EEEEHHHHHCGGG
T ss_pred             hccCCCCcEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHh----cC---C-e-EEEecCccchHHH
Confidence            355567 89999997 4 377777777753 3477777654432    333432    22   1 1 11211      11


Q ss_pred             cc-CC-C---CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          124 SR-LP-F---ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       124 ~~-~~-~---~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+ +. .   ....+|+|+-...-      .... .+.++|+++|.++....
T Consensus       232 ~~~i~~~t~~~~~g~Dvvid~~G~------~~~~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          232 GPTIKEWIKQSGGEAKLALNCVGG------KSST-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             HHHHHHHHHHHTCCEEEEEESSCH------HHHH-HHHHTSCTTCEEEECCC
T ss_pred             HHHHHHHhhccCCCceEEEECCCc------hhHH-HHHHHhccCCEEEEecC
Confidence            11 10 1   12469999843221      1223 67899999999987543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=86.82  E-value=7.6  Score=29.35  Aligned_cols=77  Identities=18%  Similarity=0.236  Sum_probs=50.4

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeC-CHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~-s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----  128 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.++. ++..++...+.+....   ..++.++..|+.+..     +    
T Consensus        25 ~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~   99 (281)
T 3v2h_A           25 TKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS---SGTVLHHPADMTKPSEIADMMAMVA   99 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC---SSCEEEECCCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc---CCcEEEEeCCCCCHHHHHHHHHHHH
Confidence            567888887665   34445666665  8999998 6666666665554432   346888889987632     0    


Q ss_pred             -CCCceeEEEeccccc
Q 026688          129 -ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 -~~~~~D~i~~~~~l~  143 (235)
                       .-+..|+++.+....
T Consensus       100 ~~~g~iD~lv~nAg~~  115 (281)
T 3v2h_A          100 DRFGGADILVNNAGVQ  115 (281)
T ss_dssp             HHTSSCSEEEECCCCC
T ss_pred             HHCCCCCEEEECCCCC
Confidence             014789999876553

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=86.78  E-value=3.6  Score=27.97  Aligned_cols=96  Identities=19%  Similarity=0.167  Sum_probs=50.6

Q ss_pred             CCCeEEEecCCC-chHH-HHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCcee
Q 026688           61 LGGNIIDASCGS-GLFS-RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSID  134 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~-~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D  134 (235)
                      ++.+|+-+|+|. |... ..+.+.+.  .|+++|.++..++.++.   .      ....++..|..+..    .....+|
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~--~V~vid~~~~~~~~~~~---~------~g~~~~~~d~~~~~~l~~~~~~~ad   86 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGH--SVVVVDKNEYAFHRLNS---E------FSGFTVVGDAAEFETLKECGMEKAD   86 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCGGGGGGSCT---T------CCSEEEESCTTSHHHHHTTTGGGCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHh---c------CCCcEEEecCCCHHHHHHcCcccCC
Confidence            468999999976 5433 34444444  89999999865443321   1      12445556643311    1124688


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +|+....-.   .....+..+.+.+.|...++....
T Consensus        87 ~Vi~~~~~~---~~~~~~~~~~~~~~~~~~iv~~~~  119 (155)
T 2g1u_A           87 MVFAFTNDD---STNFFISMNARYMFNVENVIARVY  119 (155)
T ss_dssp             EEEECSSCH---HHHHHHHHHHHHTSCCSEEEEECS
T ss_pred             EEEEEeCCc---HHHHHHHHHHHHHCCCCeEEEEEC
Confidence            888643211   112333344454555556555443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=86.73  E-value=3.9  Score=31.62  Aligned_cols=98  Identities=16%  Similarity=0.101  Sum_probs=55.1

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ..+|.-+|+|. | ..+..++..+...++..+|++++....+.......    ..++.. ..|...    -...|+|+..
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~----~~~i~~-t~d~~~----l~~aD~Vi~a   84 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFN----LPNVEI-SKDLSA----SAHSKVVIFT   84 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHT----CTTEEE-ESCGGG----GTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhc----CCCeEE-eCCHHH----HCCCCEEEEc
Confidence            47899999996 3 35555666665558999999986444444433321    235554 245432    2457999976


Q ss_pred             cccc------------ccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          140 AAIH------------CWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       140 ~~l~------------~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ....            ..+-...+++.+.+.. |++++++.+
T Consensus        85 ag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~s  125 (303)
T 2i6t_A           85 VNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVAS  125 (303)
T ss_dssp             CCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcC
Confidence            5332            1111135566677765 899887643

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=86.47  E-value=4.1  Score=30.43  Aligned_cols=76  Identities=22%  Similarity=0.306  Sum_probs=52.1

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|-.|++.|   ..+..|++.+.  +|+.++.+++.++.+.+.+...+   ..++.++..|+.+..     +     
T Consensus        10 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (262)
T 3pk0_A           10 GRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG---SGKVIGVQTDVSDRAQCDALAGRAVE   84 (262)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS---SSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC---CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            567887777654   33445566665  89999999988887777665532   247888999997632     0     


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      .-+..|+++.+...
T Consensus        85 ~~g~id~lvnnAg~   98 (262)
T 3pk0_A           85 EFGGIDVVCANAGV   98 (262)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HhCCCCEEEECCCC
Confidence            01368999987654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=86.44  E-value=4.9  Score=29.03  Aligned_cols=90  Identities=12%  Similarity=0.003  Sum_probs=52.7

Q ss_pred             eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeEEE
Q 026688           64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVH  137 (235)
Q Consensus        64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~i~  137 (235)
                      +|+-+|+|. | .++..|.+.+.  .|+++|.+++.++...+.         ....++.+|..+..    ..-..+|+|+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~l~~~---------~~~~~i~gd~~~~~~l~~a~i~~ad~vi   70 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY--GVVIINKDRELCEEFAKK---------LKATIIHGDGSHKEILRDAEVSKNDVVV   70 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHH---------SSSEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHH---------cCCeEEEcCCCCHHHHHhcCcccCCEEE
Confidence            577788754 3 22333444444  899999999887765442         13567888886531    1235688888


Q ss_pred             ecccccccCCh--HHHHHHHHHhccCCcEEEEEE
Q 026688          138 AGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       138 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +..     ++.  ...+..+.+.+.|...++...
T Consensus        71 ~~~-----~~d~~n~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           71 ILT-----PRDEVNLFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             ECC-----SCHHHHHHHHHHHHHTSCCCEEEECC
T ss_pred             Eec-----CCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence            542     222  233445555556666666533

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=86.42  E-value=5.1  Score=26.20  Aligned_cols=91  Identities=15%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             CCeEEEecCCC-chH-HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeE
Q 026688           62 GGNIIDASCGS-GLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  135 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~-~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~  135 (235)
                      ..+|+-+|+|. |.. +..+.+.+.  +|+++|.+++.++...+..         .+.+..+|..+..    .....+|+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~--~v~~~d~~~~~~~~~~~~~---------~~~~~~~d~~~~~~l~~~~~~~~d~   72 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAEI---------DALVINGDCTKIKTLEDAGIEDADM   72 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC---------SSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHhc---------CcEEEEcCCCCHHHHHHcCcccCCE
Confidence            36789998865 322 334444444  8999999987766554321         2445556654321    11246899


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEE
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      |+......   .....+..+.+.+.++ .++.
T Consensus        73 vi~~~~~~---~~~~~~~~~~~~~~~~-~ii~  100 (140)
T 1lss_A           73 YIAVTGKE---EVNLMSSLLAKSYGIN-KTIA  100 (140)
T ss_dssp             EEECCSCH---HHHHHHHHHHHHTTCC-CEEE
T ss_pred             EEEeeCCc---hHHHHHHHHHHHcCCC-EEEE
Confidence            88653211   1123344555667775 4544

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=86.34  E-value=4.2  Score=30.32  Aligned_cols=76  Identities=14%  Similarity=0.104  Sum_probs=52.1

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  129 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---  129 (235)
                      .++++|-.|++.|   .++..+++.+.  +|+.++.+++.++...+.+...    ..++.++..|+.+..     +.   
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~  101 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAA----GGEAESHACDLSHSDAIAAFATGVL  101 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHh----CCceeEEEecCCCHHHHHHHHHHHH
Confidence            3578888887654   33445555555  8999999998888777776554    346888889987632     00   


Q ss_pred             --CCceeEEEecccc
Q 026688          130 --SSSIDAVHAGAAI  142 (235)
Q Consensus       130 --~~~~D~i~~~~~l  142 (235)
                        .+..|+++.+...
T Consensus       102 ~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A          102 AAHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHHSCCSEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence              1468999987655

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=86.02  E-value=4.4  Score=30.15  Aligned_cols=76  Identities=16%  Similarity=0.159  Sum_probs=52.5

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   ..+..+++.+.  +|+.+|.+++.++...+.+...    ..++.++..|+.+..     +.    
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~   85 (256)
T 3gaf_A           12 DAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQA----GGKAIGLECNVTDEQHREAVIKAALD   85 (256)
T ss_dssp             TCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            567887777665   34445666665  8999999998887777766553    346888899987632     00    


Q ss_pred             -CCceeEEEeccccc
Q 026688          130 -SSSIDAVHAGAAIH  143 (235)
Q Consensus       130 -~~~~D~i~~~~~l~  143 (235)
                       -+..|+++.+....
T Consensus        86 ~~g~id~lv~nAg~~  100 (256)
T 3gaf_A           86 QFGKITVLVNNAGGG  100 (256)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HcCCCCEEEECCCCC
Confidence             13689999876543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=86.01  E-value=3.6  Score=30.62  Aligned_cols=75  Identities=24%  Similarity=0.206  Sum_probs=51.6

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.+|.+++.++.+.+.+...    ..++.++..|+.+..     +.    
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQF----PGQILTVQMDVRNTDDIQKMIEQIDE   79 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCS----TTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            567887777655   33445566665  8999999998888877766543    346888899997632     00    


Q ss_pred             -CCceeEEEecccc
Q 026688          130 -SSSIDAVHAGAAI  142 (235)
Q Consensus       130 -~~~~D~i~~~~~l  142 (235)
                       -+..|+++.+...
T Consensus        80 ~~g~id~lv~nAg~   93 (257)
T 3imf_A           80 KFGRIDILINNAAG   93 (257)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             1468999987654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=85.93  E-value=6.6  Score=28.57  Aligned_cols=71  Identities=21%  Similarity=0.156  Sum_probs=44.5

Q ss_pred             CCeEEEecCCC--c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe-eEEeccccc-CCCCCCceeEE
Q 026688           62 GGNIIDASCGS--G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRADISR-LPFASSSIDAV  136 (235)
Q Consensus        62 ~~~vLdiG~G~--G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~-~~~~~~~~D~i  136 (235)
                      +++||-.|+..  | .+...|++.+.  +|++++.++..++....          .++ .++.+|+.+ +.-.-+..|+|
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~D~v   88 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGPELRE----------RGASDIVVANLEEDFSHAFASIDAV   88 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH----------TTCSEEEECCTTSCCGGGGTTCSEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHHHHHh----------CCCceEEEcccHHHHHHHHcCCCEE
Confidence            67888887643  2 23344455554  89999998876544332          256 788888862 11112478999


Q ss_pred             Eecccccc
Q 026688          137 HAGAAIHC  144 (235)
Q Consensus       137 ~~~~~l~~  144 (235)
                      +.+.....
T Consensus        89 i~~ag~~~   96 (236)
T 3e8x_A           89 VFAAGSGP   96 (236)
T ss_dssp             EECCCCCT
T ss_pred             EECCCCCC
Confidence            98766543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=85.89  E-value=4.6  Score=29.69  Aligned_cols=76  Identities=16%  Similarity=0.117  Sum_probs=52.5

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|-.|++.|   .++..+++.+.  +|+.++.++..++...+.+...    ..++.++..|+.+..          -
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEK----GFKARGLVLNISDIESIQNFFAEIKA   78 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            567888887655   34455666665  8999999998888777766554    346888899987632          0


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      ..+..|+++.+....
T Consensus        79 ~~~~id~li~~Ag~~   93 (247)
T 3lyl_A           79 ENLAIDILVNNAGIT   93 (247)
T ss_dssp             TTCCCSEEEECCCCC
T ss_pred             HcCCCCEEEECCCCC
Confidence            124689999876543

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=85.58  E-value=5.5  Score=30.82  Aligned_cols=98  Identities=15%  Similarity=0.167  Sum_probs=54.7

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHH-hhhcCCCCCCCeeEE----ecccccCCCCCCceeE
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEF-VQQESNFPKENFLLV----RADISRLPFASSSIDA  135 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~----~~d~~~~~~~~~~~D~  135 (235)
                      .+|+-+|+|. | .++..|++.+.  .|+.++.++  .+..++. +..... ......+.    ..|..+.   ...+|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~--~V~~~~r~~--~~~i~~~Gl~~~~~-~~g~~~~~~~~~~~~~~~~---~~~~Dl   74 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH--CVSVVSRSD--YETVKAKGIRIRSA-TLGDYTFRPAAVVRSAAEL---ETKPDC   74 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC--EEEEECSTT--HHHHHHHCEEEEET-TTCCEEECCSCEESCGGGC---SSCCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCh--HHHHHhCCcEEeec-CCCcEEEeeeeeECCHHHc---CCCCCE
Confidence            5799999996 3 45556666665  899999886  2444332 000000 01122211    1122211   236899


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      |+..---..+.   .+++.+...++++..++.....
T Consensus        75 VilavK~~~~~---~~l~~l~~~l~~~t~Iv~~~nG  107 (320)
T 3i83_A           75 TLLCIKVVEGA---DRVGLLRDAVAPDTGIVLISNG  107 (320)
T ss_dssp             EEECCCCCTTC---CHHHHHTTSCCTTCEEEEECSS
T ss_pred             EEEecCCCChH---HHHHHHHhhcCCCCEEEEeCCC
Confidence            99754444333   4678888899888766654433

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=85.58  E-value=4.1  Score=30.62  Aligned_cols=76  Identities=12%  Similarity=0.094  Sum_probs=51.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.++.+++.++...+.+...    ..++.++.+|+.+..     +     
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~   77 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDA----GGTALAQVLDVTDRHSVAAFAQAAVD   77 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            567888887665   33445566665  8999999998888877766554    236778888987632     0     


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      .-+..|+++.+..+.
T Consensus        78 ~~g~iD~lVnnAG~~   92 (264)
T 3tfo_A           78 TWGRIDVLVNNAGVM   92 (264)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HcCCCCEEEECCCCC
Confidence            014689999876543

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=85.57  E-value=3.7  Score=32.19  Aligned_cols=98  Identities=16%  Similarity=0.113  Sum_probs=54.6

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--CCCCC--CCeeEEecccccCCCCCCceeEE
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPK--ENFLLVRADISRLPFASSSIDAV  136 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~--~~~~~~~~d~~~~~~~~~~~D~i  136 (235)
                      .+|.-+|+|. | .++..+++.+.  .|+++|.+++.++..++.....  +....  .++.....|..+.   ...+|+|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~v   79 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVI   79 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH---HhcCCEE
Confidence            5899999986 4 34455666654  8999999988777666542100  00000  0000111222111   1357988


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~  168 (235)
                      +..-.-..   ...+++.+...++++..++..
T Consensus        80 i~~v~~~~---~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           80 LIVVPAIH---HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EECSCGGG---HHHHHHHHGGGCCTTCEEEES
T ss_pred             EEeCCchH---HHHHHHHHHHhCCCCCEEEEc
Confidence            86543332   246778888888887655543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=85.46  E-value=4.9  Score=30.37  Aligned_cols=76  Identities=12%  Similarity=0.105  Sum_probs=52.3

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|-.|++.|   .++..|++.+.  +|+.++.++..++...+.+...    ..++.++.+|+.+..     +     
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~   97 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAA----GHDVDGSSCDVTSTDEVHAAVAAAVE   97 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            578888887665   34455666665  8999999998888777766543    346888899987632     0     


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      .-+..|+++.+....
T Consensus        98 ~~g~id~lv~nAg~~  112 (279)
T 3sju_A           98 RFGPIGILVNSAGRN  112 (279)
T ss_dssp             HHCSCCEEEECCCCC
T ss_pred             HcCCCcEEEECCCCC
Confidence            014689999876543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=85.19  E-value=4.2  Score=33.11  Aligned_cols=87  Identities=13%  Similarity=0.065  Sum_probs=50.2

Q ss_pred             CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      ..+++|+-+|+|. |......++.. .++|+++|+++.....+..    .      ...  ..++.+.   -...|+|+.
T Consensus       218 L~GktV~ViG~G~IGk~vA~~Lra~-Ga~Viv~D~dp~ra~~A~~----~------G~~--v~~Leea---l~~ADIVi~  281 (435)
T 3gvp_A          218 FGGKQVVVCGYGEVGKGCCAALKAM-GSIVYVTEIDPICALQACM----D------GFR--LVKLNEV---IRQVDIVIT  281 (435)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----T------TCE--ECCHHHH---TTTCSEEEE
T ss_pred             ecCCEEEEEeeCHHHHHHHHHHHHC-CCEEEEEeCChhhhHHHHH----c------CCE--eccHHHH---HhcCCEEEE
Confidence            3578999999997 55555444432 4599999999864444332    1      111  2333332   135688887


Q ss_pred             cccccccCChHHHHHHHHHhccCCcEEEE
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      ...-.++-     -.+..+.+|||+.++-
T Consensus       282 atgt~~lI-----~~e~l~~MK~gailIN  305 (435)
T 3gvp_A          282 CTGNKNVV-----TREHLDRMKNSCIVCN  305 (435)
T ss_dssp             CSSCSCSB-----CHHHHHHSCTTEEEEE
T ss_pred             CCCCcccC-----CHHHHHhcCCCcEEEE
Confidence            42222221     1256677888876654

>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A

Probab=85.18  E-value=4.5  Score=24.38  Aligned_cols=71  Identities=14%  Similarity=0.124  Sum_probs=44.2

Q ss_pred             eEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCC
Q 026688          134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL  213 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  213 (235)
                      |..+-...+. .|.|--..++..+-+++|..|.+..-..                          -+..++..++++.|+
T Consensus        10 ~~~lD~rGl~-CP~Pvl~~kkal~~l~~G~~l~V~~dd~--------------------------~a~~di~~~~~~~G~   62 (82)
T 3lvj_C           10 DHTLDALGLR-CPEPVMMVRKTVRNMQPGETLLIIADDP--------------------------ATTRDIPGFCTFMEH   62 (82)
T ss_dssp             SEEEECTTCC-TTHHHHHHHHHHHTSCTTCEEEEEECCT--------------------------THHHHHHHHHHHTTC
T ss_pred             CEEEECCCCC-CCHHHHHHHHHHHhCCCCCEEEEEECCc--------------------------cHHHHHHHHHHHCCC
Confidence            4444333333 2334344566677788888777655432                          245688999999999


Q ss_pred             ceeEEEeeCcEEEEEEec
Q 026688          214 VDFKCTRNRGFVMFTATK  231 (235)
Q Consensus       214 ~~~~~~~~~~~~~~~~~k  231 (235)
                      +++.....+..+.+..+|
T Consensus        63 ~~~~~~~~~~~~~i~I~K   80 (82)
T 3lvj_C           63 ELVAKETDGLPYRYLIRK   80 (82)
T ss_dssp             EEEEEECSSSSEEEEEEC
T ss_pred             EEEEEEecCCEEEEEEEE
Confidence            988876555555555555

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=85.10  E-value=6.4  Score=32.61  Aligned_cols=96  Identities=18%  Similarity=0.229  Sum_probs=58.6

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCC-------CCCeeEEecccccC
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFP-------KENFLLVRADISRL  126 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~-------~~~~~~~~~d~~~~  126 (235)
                      .+|--||+|. | ..+..+++.+.  .|+++|.+++.++.+.+.+...       +...       ..++++ ..|... 
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-   81 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP-VTDIHA-   81 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE-ECCGGG-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE-eCCHHH-
Confidence            5788899986 3 45666777765  8999999999999887653221       1000       002222 233322 


Q ss_pred             CCCCCceeEEEecccccccCCh---HHHHHHHHHhccCCcEEEEEE
Q 026688          127 PFASSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~  169 (235)
                         -...|+|+..-    .++.   ..+++++...++|+..++..+
T Consensus        82 ---~~~aDlVIeAV----pe~~~vk~~v~~~l~~~~~~~~Ilasnt  120 (483)
T 3mog_A           82 ---LAAADLVIEAA----SERLEVKKALFAQLAEVCPPQTLLTTNT  120 (483)
T ss_dssp             ---GGGCSEEEECC----CCCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ---hcCCCEEEEcC----CCcHHHHHHHHHHHHHhhccCcEEEecC
Confidence               24578888432    1222   467888999999887665433

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=84.92  E-value=0.79  Score=30.78  Aligned_cols=71  Identities=10%  Similarity=0.171  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHhhhcCCCCCCCeeEEeccccc---CCCCCCceeEEEeccccc-c-cCChHHHHHHHHHhccCCcEEEE
Q 026688           94 SENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASSSIDAVHAGAAIH-C-WSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus        94 s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~i~~~~~l~-~-~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      .|+.++.++.......   ...+...-.|=..   ..++...||.|+...--. . ..-+..++..+.+.|||||.|..
T Consensus        21 ~pe~le~~k~~~~~~~---~~~~d~qmlDRLa~G~VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g   96 (136)
T 2km1_A           21 TPELVENTKAQAASKK---VKFVDQFLINKLNDGSITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG   96 (136)
T ss_dssp             SHHHHHHHHHHHHHTT---EEEEEEEEHHHHHHTCCCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred             CHHHHHHHHHhhhccc---cchhhHHHHHHHhcCcccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence            4677777776654420   1122333233211   236688999999643322 2 22347899999999999999975

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=84.87  E-value=5.7  Score=30.09  Aligned_cols=75  Identities=21%  Similarity=0.211  Sum_probs=51.7

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  129 (235)
                      ++++|-.|++.|   ..+..|++.+.  .|+.+|.+++.++...+.+...    ..++.++..|+.+..     +.    
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~  101 (283)
T 3v8b_A           28 SPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGA----GGQAIALEADVSDELQMRNAVRDLVL  101 (283)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            567888887665   33445566665  8999999998887777766543    346888899987632     00    


Q ss_pred             -CCceeEEEecccc
Q 026688          130 -SSSIDAVHAGAAI  142 (235)
Q Consensus       130 -~~~~D~i~~~~~l  142 (235)
                       -+..|+++.+...
T Consensus       102 ~~g~iD~lVnnAg~  115 (283)
T 3v8b_A          102 KFGHLDIVVANAGI  115 (283)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCCCEEEECCCC
Confidence             1478999987654

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=84.82  E-value=9  Score=29.89  Aligned_cols=98  Identities=16%  Similarity=0.141  Sum_probs=54.5

Q ss_pred             CCCCCCeEEEecCC-C-chH-HHHHHHcCCCceE-EEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCce
Q 026688           58 KPVLGGNIIDASCG-S-GLF-SRIFAKSGLFSLV-VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  133 (235)
Q Consensus        58 ~~~~~~~vLdiG~G-~-G~~-~~~l~~~~~~~~v-~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (235)
                      +.....+|.-|||| . |.. ...+.+..+..++ ..+|.+++..+...+++.         +.-...|+.++- .....
T Consensus        14 ~~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~---------~~~~~~~~~~ll-~~~~v   83 (340)
T 1zh8_A           14 KPLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG---------NPAVFDSYEELL-ESGLV   83 (340)
T ss_dssp             --CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS---------SCEEESCHHHHH-HSSCC
T ss_pred             CCCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC---------CCcccCCHHHHh-cCCCC
Confidence            34446789999999 3 543 3344433255565 578999877666554431         112335555431 23468


Q ss_pred             eEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      |+|+....-      ..-...+..+|+.|-.+++.-+.
T Consensus        84 D~V~i~tp~------~~H~~~~~~al~aGkhVl~EKPl  115 (340)
T 1zh8_A           84 DAVDLTLPV------ELNLPFIEKALRKGVHVICEKPI  115 (340)
T ss_dssp             SEEEECCCG------GGHHHHHHHHHHTTCEEEEESSS
T ss_pred             CEEEEeCCc------hHHHHHHHHHHHCCCcEEEeCCC
Confidence            999964321      12244556677777677765443

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=84.82  E-value=9  Score=29.91  Aligned_cols=93  Identities=15%  Similarity=0.018  Sum_probs=52.6

Q ss_pred             CeEEEecCCC-chHHHHHHHcCCCceEE-EEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           63 GNIIDASCGS-GLFSRIFAKSGLFSLVV-ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        63 ~~vLdiG~G~-G~~~~~l~~~~~~~~v~-~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      .+|.-||||. |..........+..+++ .+|.+++..+.+.+...         +.....|..++- .....|+|+...
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~---------~~~~~~~~~~ll-~~~~~D~V~i~t   72 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLG---------VEKAYKDPHELI-EDPNVDAVLVCS   72 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHT---------CSEEESSHHHHH-HCTTCCEEEECS
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhC---------CCceeCCHHHHh-cCCCCCEEEEcC
Confidence            4788899985 44333333334556776 57999877665544331         112334554431 234689998543


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .-      ......+..+|+.|-.+++..+.
T Consensus        73 p~------~~h~~~~~~al~~gk~v~~EKP~   97 (344)
T 3ezy_A           73 ST------NTHSELVIACAKAKKHVFCEKPL   97 (344)
T ss_dssp             CG------GGHHHHHHHHHHTTCEEEEESCS
T ss_pred             CC------cchHHHHHHHHhcCCeEEEECCC
Confidence            21      22344556677777777766553

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=84.51  E-value=6.8  Score=29.23  Aligned_cols=78  Identities=10%  Similarity=0.041  Sum_probs=52.8

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|-.|++.|   .++..+++.+.  +|+.++.+++.++.+.+.+.....  ..++.++..|+.+..     +     
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFP--GARLFASVCDVLDALQVRAFAEACER   83 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHST--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC--CceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            577888887765   34455666665  899999999888877776654211  335888889987632     0     


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      .-+..|+++.+....
T Consensus        84 ~~g~id~lvnnAg~~   98 (265)
T 3lf2_A           84 TLGCASILVNNAGQG   98 (265)
T ss_dssp             HHCSCSEEEECCCCC
T ss_pred             HcCCCCEEEECCCCC
Confidence            014689999876553

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=84.01  E-value=4.6  Score=32.29  Aligned_cols=110  Identities=18%  Similarity=0.131  Sum_probs=65.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  127 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (235)
                      ...+.+++.+... ..+||.++-+.|.++..+...   ..++.+.-|-.....    +..++.    ....  .+  ...
T Consensus        33 ~~~~~l~~~~~~~-~~~~l~~n~~~g~~~~~~~~~---~~~~~~~~~~~~~~~----l~~~~~----~~~~--~~--~~~   96 (381)
T 3dmg_A           33 PVHDLLQKTVEPF-GERALDLNPGVGWGSLPLEGR---MAVERLETSRAAFRC----LTASGL----QARL--AL--PWE   96 (381)
T ss_dssp             HHHHHHHTTCCCC-SSEEEESSCTTSTTTGGGBTT---BEEEEEECBHHHHHH----HHHTTC----CCEE--CC--GGG
T ss_pred             hHHHHHHHHHHHh-CCcEEEecCCCCccccccCCC---CceEEEeCcHHHHHH----HHHcCC----Cccc--cC--Ccc
Confidence            4556666766654 479999999999887766532   367776555433322    333332    1111  11  111


Q ss_pred             CCCCceeEEEeccccc-ccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          128 FASSSIDAVHAGAAIH-CWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~-~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      .+...||+|+....=. .....+..|..+.+.|+|||.|++......
T Consensus        97 ~~~~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~  143 (381)
T 3dmg_A           97 AAAGAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNK  143 (381)
T ss_dssp             SCTTCEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             CCcCCCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHH
Confidence            2346899998422210 000124678888999999999998876643

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=83.95  E-value=7  Score=29.29  Aligned_cols=76  Identities=17%  Similarity=0.136  Sum_probs=49.7

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      +++||-.|++.|   .++..+++.+.  +|++++.++..++...+.+...    ..++.++..|+.+..     +     
T Consensus        31 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~~  104 (272)
T 1yb1_A           31 GEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL----GAKVHTFVVDCSNREDIYSSAKKVKA  104 (272)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhc----CCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence            567888776554   23334555554  8999999988777666655443    236888889987632     0     


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      .-+.+|+++.+....
T Consensus       105 ~~g~iD~li~~Ag~~  119 (272)
T 1yb1_A          105 EIGDVSILVNNAGVV  119 (272)
T ss_dssp             HTCCCSEEEECCCCC
T ss_pred             HCCCCcEEEECCCcC
Confidence            013689999876543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=83.90  E-value=19  Score=31.64  Aligned_cols=102  Identities=20%  Similarity=0.253  Sum_probs=60.7

Q ss_pred             CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-----------CCC-CCCCeeEEecccccCC
Q 026688           62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------SNF-PKENFLLVRADISRLP  127 (235)
Q Consensus        62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----------~~~-~~~~~~~~~~d~~~~~  127 (235)
                      -++|--||+|+ | ..+..++..+.  .|+..|++++.++.+++.+...           ... ...++. ...|...+ 
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l-  391 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLR-FSSSTKEL-  391 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEE-EESCGGGG-
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhc-ccCcHHHH-
Confidence            36899999997 3 44455555555  9999999999988887655321           000 001111 22222221 


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                         ...|+|+=. +++.+.-..++++++-.+++|+..|.-.+.+
T Consensus       392 ---~~aDlVIEA-V~E~l~iK~~vf~~le~~~~~~aIlASNTSs  431 (742)
T 3zwc_A          392 ---STVDLVVEA-VFEDMNLKKKVFAELSALCKPGAFLCTNTSA  431 (742)
T ss_dssp             ---GSCSEEEEC-CCSCHHHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred             ---hhCCEEEEe-ccccHHHHHHHHHHHhhcCCCCceEEecCCc
Confidence               346877711 2222222358899999999998877654443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	3e-11
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	4e-11
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	7e-11
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-10
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	5e-10
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	5e-09
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	9e-09
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-08
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-08
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	2e-08
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	7e-08
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	2e-07
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	4e-07
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	9e-07
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	1e-06
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	3e-06
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	5e-06
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	6e-06
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	1e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	1e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-05
d2o57a1	282	c.66.1.18 (A:16-297) Putative sarcosine dimethylgl	2e-05
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	5e-05
d1m6ya2	192	c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf	1e-04
d1xtpa_	254	c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa	2e-04
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	2e-04
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-04
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	3e-04
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	3e-04

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 13/173 (7%)

Query: 57  LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 116
            +      ++D   G+G  +  F+        + +D ++ M++    F Q++        
Sbjct: 14  CRA--EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQ 69

Query: 117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 176
              +     LPF   S D +    A H +S     V E++RVL+  G F+    +VD   
Sbjct: 70  ---QGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL----LVDHYA 122

Query: 177 NLIPFSRLLRQNMMQIS--GSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF 227
              P       ++ ++         S  E + +  A  L      +    + +
Sbjct: 123 PEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQY 175

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 57.9 bits (139), Expect = 4e-11
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 9/148 (6%)

Query: 38  FVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 95
                 PGP       L+    +P      +D  CG+G  +   A       V A+D + 
Sbjct: 8   IKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR--VYAIDRNP 65

Query: 96  NMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEI 155
             +      +Q+  +   +N  L+  D          ID    G +          +  I
Sbjct: 66  EAISTTEMNLQR--HGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEI---LRII 120

Query: 156 SRVLRPGGVFVGTTYIVDGPFNLIPFSR 183
              L+PGG  + T  +++  F  +   R
Sbjct: 121 KDKLKPGGRIIVTAILLETKFEAMECLR 148

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 58.4 bits (140), Expect = 7e-11
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 20/182 (10%)

Query: 52  LMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESN 110
           L+    K     +I+D  CG G    +        S    +D  E +L +  E  +    
Sbjct: 18  LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY 77

Query: 111 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV---- 166
             +          +     +   D     A +   ++P T + ++   ++ GG  +    
Sbjct: 78  DSEFLE-----GDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132

Query: 167 -----GTTYIVDG--PFNLIPFSRLLR--QNMMQISGSYTFLSEREIEDLCRACGLVDFK 217
                  +Y++DG      I    L +  ++  Q +G    +   +I       G+ + +
Sbjct: 133 HWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIG-MKIPIYLSELGVKNIE 191

Query: 218 CT 219
           C 
Sbjct: 192 CR 193

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 56.9 bits (136), Expect = 2e-10
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 9/170 (5%)

Query: 44  PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 103
           P  E+++  +   L+   G  I+D   GSG     +A+    +    +D S     Q   
Sbjct: 16  PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKR 74

Query: 104 FVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 163
             ++     + +F+   A       A+   D      A       +     +++ L+PGG
Sbjct: 75  RAEELGVSERVHFIHNDAAG---YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGG 131

Query: 164 VFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 213
           + +    I +  +  +P +  + Q     S S  FL+   +       G 
Sbjct: 132 IML----IGEPYWRQLPATEEIAQACGVSSTSD-FLTLPGLVGAFDDLGY 176

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 55.4 bits (132), Expect = 5e-10
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 13/173 (7%)

Query: 57  LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 116
           LK      ++D + G G  +  FA       VVA D +E++LK    F++   +   E  
Sbjct: 13  LKG--NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYV 68

Query: 117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 176
                 +         +       A H + +P++ V+E  RVL+ GG  +    +VD   
Sbjct: 69  QGDAEQMPFTDERFHIVTCRI---AAHHFPNPASFVSEAYRVLKKGGQLL----LVDNSA 121

Query: 177 NLIPFSRLLRQNMMQI--SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF 227
                  +    + +      +    + +   +    G    +        +F
Sbjct: 122 PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIF 174

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 5e-09
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 15/169 (8%)

Query: 17  ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS 76
           A E     +      R W Q ++        +    + G L+      ++D +CG+G+ S
Sbjct: 13  AAEGIPDQYADGEAARVW-QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDS 71

Query: 77  RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-----SRLPFASS 131
            +  + G    V ++D S+ MLK   +        P  +  ++           +P    
Sbjct: 72  IMLVEEGFS--VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDG 129

Query: 132 SIDAVHAGAAIHCWSSPSTG-------VAEISRVLRPGGVFVGTTYIVD 173
               +  G +                 +  I+ ++RPGG+ V      D
Sbjct: 130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD 178

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 9e-09
 Identities = 32/264 (12%), Positives = 68/264 (25%), Gaps = 73/264 (27%)

Query: 19  EFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFSR 77
             +  P        G          P   +   +        V G  +ID   G  ++  
Sbjct: 21  NNYAPPRGDLCNPNGVG--------PWKLRCLAQTFAT--GEVSGRTLIDIGSGPTVYQ- 69

Query: 78  IFAKSGLFSLVVALDYSENMLKQ----------------CYEFVQQESNFPKE------- 114
           + +    F  +   D+ E   ++                  +         +        
Sbjct: 70  LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129

Query: 115 ----NFLLVRADISR------LPFASSSIDAVHAGAAIHC----WSSPSTGVAEISRVLR 160
                  ++  D+ +         A    DA+ +   +       +S    +  I+ +LR
Sbjct: 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR 189

Query: 161 PGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL------- 213
           PGG  +    + +  + L   +RL          +   +SE E+ +     G        
Sbjct: 190 PGGHLLLIGAL-EESWYLAGEARL----------TVVPVSEEEVREALVRSGYKVRDLRT 238

Query: 214 ------VDFKCTRNRGFVMFTATK 231
                 +       +G     A K
Sbjct: 239 YIMPAHLQTGVDDVKGVFFAWAQK 262

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 51.5 bits (122), Expect = 1e-08
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 6/132 (4%)

Query: 52  LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 111
           L++ Y K   G +++D  CG G     + ++G       +D +E  +       +     
Sbjct: 17  LIRLYTKR--GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRR 73

Query: 112 PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGT 168
            K  F    +    +             +  + +S+          I+R LRPGG F+ T
Sbjct: 74  FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133

Query: 169 TYIVDGPFNLIP 180
               D       
Sbjct: 134 VPSRDVILERYK 145

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 7/121 (5%)

Query: 65  IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ESNFPKENFLL 118
            +D   G G      A +        ++ ++   K      ++              + L
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214

Query: 119 VRADISRLPFASSSIDA-VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 177
            R D     +     +  V               + E    ++ GG  V +       F 
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFR 274

Query: 178 L 178
           +
Sbjct: 275 I 275

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 14/128 (10%), Positives = 31/128 (24%), Gaps = 12/128 (9%)

Query: 51  ELMKGYLKPVLGGNIIDASCGSGLFSRIFAK------SGLFSLVVALDYSENMLKQCYEF 104
            ++           I+    G+G               G+      ++ S   + +  E 
Sbjct: 30  GIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKEL 89

Query: 105 VQQESNFPKENFLLVRADISRL------PFASSSIDAVHAGAAIHCWSSPSTGVAEISRV 158
           V + SN     F   +   S               D +H    ++        +     +
Sbjct: 90  VAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSL 149

Query: 159 LRPGGVFV 166
           L      +
Sbjct: 150 LGTNAKML 157

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 48.8 bits (115), Expect = 7e-08
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 24/215 (11%)

Query: 26  MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 85
           M+   E  + + +   G      +       + P   G  +D  CG+G  S   A +G  
Sbjct: 1   MTVRDENYFTEKY---GLTRTHSDVLAAAKVVAP---GRTLDLGCGNGRNSLYLAANGYD 54

Query: 86  SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 145
                 + +          +++       + L                D + +   +   
Sbjct: 55  VTAWDKNPA------SMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL 108

Query: 146 SSP--STGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSER 202
            +      +A + R  +PGG  +    +    F   + F    ++  ++      +    
Sbjct: 109 EAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELR-----RYYEGW 163

Query: 203 EIEDLCRACG-LVDFKCTRNRG---FVMFTATKPS 233
           ++       G L       NR    F    A K +
Sbjct: 164 DMLKYNEDVGELHRTDENGNRIKLRFATMLARKTA 198

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 19/169 (11%), Positives = 46/169 (27%), Gaps = 17/169 (10%)

Query: 52  LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 111
           +++ +      GN+++     G F+    +   F+ +  ++ SE  +      ++    +
Sbjct: 11  MVRAFTPFFRPGNLLELGSFKGDFTSRLQE--HFNDITCVEASEEAISHAQGRLKDGITY 68

Query: 112 PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEI-SRVLRPGGVFVGTTY 170
               F                 D +     +     P   +  I    L  GG       
Sbjct: 69  IHSRF--------EDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP 120

Query: 171 IVDGPFNLIPFSRLLRQNMMQIS------GSYTFLSEREIEDLCRACGL 213
             +     I     +  +   ++      G     +   +E      GL
Sbjct: 121 NANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 56  YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 115
            +K      I+     +G      A      +V A++Y+  +++   E +   +      
Sbjct: 71  PIKR--DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR---ELLDACAERENII 125

Query: 116 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
            +L         +A+           +   +     +      L+ GG  +
Sbjct: 126 PILGD-ANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 9e-07
 Identities = 17/148 (11%), Positives = 48/148 (32%), Gaps = 12/148 (8%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
           GG +++   G  + +    ++ +      ++ ++ + ++  ++  ++++       L   
Sbjct: 54  GGRVLEVGFGMAIAASKVQEAPIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED 112

Query: 122 DISRLPFASS---SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 178
               LP         D              +       R+L+PGGV            NL
Sbjct: 113 VAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY--------CNL 164

Query: 179 IPFSRLLRQNMMQISGSYTFLSEREIED 206
             +  L++     I+  +       + +
Sbjct: 165 TSWGELMKSKYSDITIMFEETQVPALLE 192

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 24/187 (12%), Positives = 53/187 (28%), Gaps = 47/187 (25%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL--- 118
           G  +ID   G  ++  + A    F  +   D+++   ++  +++++E         +   
Sbjct: 52  GDTLIDIGSGPTIYQ-VLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFA 110

Query: 119 ----------------------------VRADISRLPFASSSIDAVHAGAAIHC----WS 146
                                       V       P      D V    A+ C      
Sbjct: 111 CELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLD 170

Query: 147 SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 206
           +    +  ++ +L+PGG  V T  +    + +            +       L + E+E 
Sbjct: 171 AYRAALCNLASLLKPGGHLVTTVTLRLPSYMV----------GKREFSCV-ALEKGEVEQ 219

Query: 207 LCRACGL 213
                G 
Sbjct: 220 AVLDAGF 226

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 18/146 (12%)

Query: 35  RQNFVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALD 92
           R+ F+  G   P ++     ++  L       ++D  CG G ++  FA +        LD
Sbjct: 57  RRAFLDAGHYQPLRDAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLD 115

Query: 93  YSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV 152
            S+  +K   +   Q +           A   RLPF+ +S+DA+    A           
Sbjct: 116 VSKVAIKAAAKRYPQVTFC--------VASSHRLPFSDTSMDAIIRIYAPCKA------- 160

Query: 153 AEISRVLRPGGVFVGTTYIVDGPFNL 178
            E++RV++PGG  +  T        L
Sbjct: 161 EELARVVKPGGWVITATPGPRHLMEL 186

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 6/111 (5%)

Query: 56  YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 115
            L+      ++     SG      A      ++ A++YS    ++  E V++ +N     
Sbjct: 53  KLRG--DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNI---I 107

Query: 116 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
            LL  A                    I   +      A     L+  G  V
Sbjct: 108 PLLFDASKPWKYS-GIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVV 157

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 6e-06
 Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 15/143 (10%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
              ++D  CG+G+ S   AK+G    V+ +D SE + +        +         L++ 
Sbjct: 36  DKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLED---TITLIKG 91

Query: 122 DISRLPFASSSIDAVHAGAAIHCWSSPSTG---VAEISRVLRPGGVFV---GTTYIVDGP 175
            I  +      +D + +    +     S     +   ++ L  GG       T  +V   
Sbjct: 92  KIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLV--- 148

Query: 176 FNLIPFSRLLRQNMMQISGSYTF 198
              +         +      Y F
Sbjct: 149 --AVSDVNKHADRIAFWDDVYGF 169

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 48  KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ 106
           K+   +        G  +++A  GSG  +    ++ G    V++ +   +  +     V 
Sbjct: 83  KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 142

Query: 107 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
                P +N+ LV +D++       S+D       +    +P   +  +SR+L  GGV +
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELPDGSVDRA-----VLDMLAPWEVLDAVSRLLVAGGVLM 197

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
              ++D   G+G+     AK+G    V+ ++ S             ++N       +++ 
Sbjct: 34  DKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSISDYAVK---IVKANKLDHVVTIIKG 89

Query: 122 DISRLPFASSSIDAVHAGAAIHC---WSSPSTGVAEISRVLRPGGVFV---GTTYIV 172
            +  +      +D + +    +C    S  +T +    + L P G+      T Y+ 
Sbjct: 90  KVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVT 146

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 11/129 (8%)

Query: 57  LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML----KQCYEFVQQESNFP 112
           LK   G   +D   G G      A     +L    +  ++       Q  E  ++   + 
Sbjct: 214 LKK--GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG 271

Query: 113 KEN---FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPST--GVAEISRVLRPGGVFVG 167
                    ++         +  I         +          V +I +  + G   + 
Sbjct: 272 MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS 331

Query: 168 TTYIVDGPF 176
              +    +
Sbjct: 332 LKSLRSLTY 340

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 52  LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN 110
           +M+  L+P  G +I++   GSG  S     +      +  ++  E+ LK+  + + +  +
Sbjct: 78  IMRCGLRP--GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 135

Query: 111 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
                              +  I      A I     P   V +I+ +++PG V  
Sbjct: 136 IGNVRT--------SRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVAT 183

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 29  IYERGWR-QNFVWGGFPGPEKE--------------FELMKGYLKPVLGGNIIDASCGSG 73
            Y   W  ++   G +  P  +                 +            +D   G G
Sbjct: 20  FYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG 79

Query: 74  LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 133
             +R   +    S +  L+ +    K+  E+  Q                  +P   +S 
Sbjct: 80  GAARFLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAGLADNITV--KYGSFLEIPCEDNSY 136

Query: 134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS 193
           D + +  A            E +RVL+P GV   T  + +   +      +L +  +   
Sbjct: 137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL--- 193

Query: 194 GSYTFLSEREIEDLCRACGLVDFKC 218
             +   S      L + CGLV  + 
Sbjct: 194 --HDMGSLGLYRSLAKECGLVTLRT 216

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (95), Expect = 5e-05
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
              ++D  CG+G+ S   AK G    V+ +D S  +            +        +R 
Sbjct: 39  DKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITL---LRG 94

Query: 122 DISRLPFASSSIDAVHA---GAAIHCWSSPSTGVAEISRVLRPGGVFV 166
            +  +      +D + +   G  +   S   T +      L  GG+  
Sbjct: 95  KLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 56  YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE- 114
           +LKP     I+D + G G  SR   +      ++ +D    +L+   E +++ S+     
Sbjct: 18  FLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLF 77

Query: 115 -------NFLLVRADISRL--PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 165
                  +FLL    I ++        +             +    + +   +L PGG  
Sbjct: 78  KVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRI 137

Query: 166 V 166
           V
Sbjct: 138 V 138

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 17/167 (10%), Positives = 40/167 (23%), Gaps = 15/167 (8%)

Query: 58  KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 117
                   +D   G G  ++       ++    L+  ++ML++    +            
Sbjct: 90  PGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILAS 148

Query: 118 LVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 177
           +  A +    +    I            +          + L P G          G   
Sbjct: 149 METATLPPNTYDLIVIQWTAI---YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD-- 203

Query: 178 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGF 224
                    + ++    S    S+   + L    G+   K      +
Sbjct: 204 ---------RFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEW 241

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 9/120 (7%)

Query: 48  KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQ 106
           K+   +   L    G  IID   GSG    + A+  G    V A +  E   K     + 
Sbjct: 90  KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT 149

Query: 107 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166
           +     +           ++   S   D     A       P   + +    L+ GG F 
Sbjct: 150 KWGLIERVTI--------KVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFA 201

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 16/130 (12%)

Query: 48  KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ 106
           K+  ++   +    G  +++A  GSG  S   +K+ G    V++ +  ++      +  +
Sbjct: 85  KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 144

Query: 107 Q--------ESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIHCWSSPSTGVAEIS 156
                          +N   +  DIS       S + DAV          +P   +    
Sbjct: 145 HWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML-----NPHVTLPVFY 199

Query: 157 RVLRPGGVFV 166
             L+ GGV  
Sbjct: 200 PHLKHGGVCA 209

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 19/186 (10%)

Query: 51  ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 110
            L+  Y+K    G ++D +CG G FS +    G            ++ +      ++ + 
Sbjct: 29  PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFE------VVGVDISEDMIRKAREYAK 80

Query: 111 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT 168
             + N   +  D  +L F   + D V    +I  +     +    E+ RVL+P G F+  
Sbjct: 81  SRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 140

Query: 169 TYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFT 228
              +      +  S ++ Q          +   + I D      +++FK  ++   V F 
Sbjct: 141 FTDLRELLPRLKESLVVGQK---------YWISKVIPDQEERTVVIEFKSEQDSFRVRFN 191

Query: 229 ATKPSQ 234
               + 
Sbjct: 192 VWGKTG 197

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 9/122 (7%)

Query: 62  GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121
             + +D +CG+G  +                ++ ++ ++     + +         L   
Sbjct: 38  FDDYLDLACGTGNLTENLCPKF------KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ 91

Query: 122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVA---EISRVLRPGGVFVGTTYIVDGPFNL 178
           DIS L              + +              +S  L+ GGVF+           +
Sbjct: 92  DISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQV 151

Query: 179 IP 180
           + 
Sbjct: 152 LG 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.96
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.96
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.95
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.94
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.94
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.93
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.93
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.92
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.92
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.92
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.91
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.9
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.9
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.89
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.89
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.89
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.89
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.88
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.88
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.87
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.86
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.86
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.86
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.86
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.86
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.85
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.85
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.85
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.85
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.84
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.82
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.82
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.81
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.81
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.8
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.8
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.78
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.77
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.76
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.76
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.75
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.75
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.73
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.73
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.71
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.7
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.7
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.69
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.68
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.64
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.62
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.61
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.61
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.59
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.59
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.55
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.53
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.51
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.51
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.48
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.43
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.42
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.42
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.4
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.38
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.37
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.36
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.36
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.32
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.31
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.29
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.29
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.27
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.26
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.26
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.25
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	99.23
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.21
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.19
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.17
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.17
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.17
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.11
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	99.07
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.01
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.95
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.94
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.94
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.91
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.88
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.86
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.84
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.81
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.81
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.76
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.7
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.55
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.49
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.37
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.22
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.91
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.9
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	97.86
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.84
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.82
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.72
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.65
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.65
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.61
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	97.59
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.53
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.48
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.47
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.45
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.44
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.42
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.42
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.39
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.38
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.35
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.34
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.3
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.28
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.17
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.04
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.73
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.6
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.52
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.51
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.45
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.44
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.44
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.41
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.37
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.34
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.28
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.26
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.17
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.08
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.08
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.84
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.53
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.21
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.0
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.99
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.85
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	93.63
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.56
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.31
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.25
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.15
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.09
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	93.0
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	92.97
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.94
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.91
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.79
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.69
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.59
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	92.52
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.33
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.32
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	92.12
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.81
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.79
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	91.73
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.73
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.62
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.41
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.27
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.25
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.06
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.04
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.76
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.74
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.63
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.61
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.36
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	89.94
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.76
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	89.7
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	89.5
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	89.37
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	89.26
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	89.05
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	88.95
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	88.74
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	88.64
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	88.51
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	88.51
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	88.13
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	87.63
d1je3a_	97	hypothetical protein YedF (EC005) {Escherichia col	87.59
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	87.52
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.07
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	86.36
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	85.96
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	85.95
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	85.73
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	85.09
d1dcja_	81	SirA {Escherichia coli [TaxId: 562]}	84.9
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	84.26
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	83.89
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	83.8
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	83.53
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	83.31
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	83.15
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	82.86
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	81.58
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	81.04
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	81.0
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	80.82
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	80.78
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	80.03

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.96  E-value=8.7e-29  Score=186.34  Aligned_cols=162  Identities=18%  Similarity=0.227  Sum_probs=134.6

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      +.++++....+++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|++++...+   ..++++.++|++++|++
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~---~~~i~~~~~d~~~l~~~   78 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFT   78 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSC
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccc---ccccccccccccccccc
Confidence            45777788888899999999999999999999876  99999999999999999987765   46899999999999988


Q ss_pred             CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh--hcCCceeecCHHHHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREIEDL  207 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  207 (235)
                      .++||+|+|..+++|++++.++++++.++|+|||++++.++....    .+....+.....  ....+.+.++..++.++
T Consensus        79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (231)
T d1vl5a_          79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPE----NDAFDVFYNYVEKERDYSHHRAWKKSDWLKM  154 (231)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCS----SHHHHHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred             ccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCC----CHHHHHHHHHHHhhcccCcccCCCHHHHHHH
Confidence            899999999999999999999999999999999999998876532    222222222221  22345678899999999


Q ss_pred             HHHcCCceeEEEe
Q 026688          208 CRACGLVDFKCTR  220 (235)
Q Consensus       208 l~~~Gf~~~~~~~  220 (235)
                      ++++||+++++..
T Consensus       155 l~~aGf~~~~~~~  167 (231)
T d1vl5a_         155 LEEAGFELEELHC  167 (231)
T ss_dssp             HHHHTCEEEEEEE
T ss_pred             HHHCCCEEEEEEE
Confidence            9999999876653

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=4.5e-28  Score=182.73  Aligned_cols=163  Identities=20%  Similarity=0.233  Sum_probs=136.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+.+.+..+++.+|||+|||+|.++..+++++.  +|+|+|+|+.|++.|++++...+   ..++.+.++|++++|+
T Consensus         4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~---~~~~~~~~~d~~~~~~   78 (234)
T d1xxla_           4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPF   78 (234)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCS
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhcccc---cccccccccccccccc
Confidence            456778888888999999999999999999999875  99999999999999999988765   4579999999999999


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh--hcCCceeecCHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREIED  206 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  206 (235)
                      ++++||+|+|..+++|++++..+++++.++|+|||.+++.++....    .+....+...+.  ....+.+.++..++..
T Consensus        79 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (234)
T d1xxla_          79 PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE----DPVLDEFVNHLNRLRDPSHVRESSLSEWQA  154 (234)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCS----SHHHHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred             cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCC----CHHHHHHHHHHHhhCCCcccccCCHHHHHH
Confidence            9999999999999999999999999999999999999998876532    233333322221  2334567788999999


Q ss_pred             HHHHcCCceeEEEe
Q 026688          207 LCRACGLVDFKCTR  220 (235)
Q Consensus       207 ~l~~~Gf~~~~~~~  220 (235)
                      +++++||.+..+..
T Consensus       155 ~~~~~gf~~~~~~~  168 (234)
T d1xxla_         155 MFSANQLAYQDIQK  168 (234)
T ss_dssp             HHHHTTEEEEEEEE
T ss_pred             HHHHCCCceeEEEE
Confidence            99999998766543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.95  E-value=5.7e-27  Score=181.35  Aligned_cols=161  Identities=17%  Similarity=0.139  Sum_probs=129.4

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  131 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (235)
                      .+.......++.+|||||||+|.++..++++. .++|+|+|+|+.+++.|+++....++  ..++++.++|+.++|++.+
T Consensus        58 ~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl--~~~v~~~~~d~~~l~~~~~  134 (282)
T d2o57a1          58 ELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGSFLEIPCEDN  134 (282)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECCTTSCSSCTT
T ss_pred             HHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccc--ccccccccccccccccccc
Confidence            33444466778999999999999999998864 35899999999999999999888765  4589999999999998889


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHc
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  211 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  211 (235)
                      +||+|++..+++|++++..+++++.++|||||.+++.++.......... ...+.....    .....+.+++.++++++
T Consensus       135 sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~s~~~~~~~l~~~  209 (282)
T d2o57a1         135 SYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSS-IQPILDRIK----LHDMGSLGLYRSLAKEC  209 (282)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG-GHHHHHHHT----CSSCCCHHHHHHHHHHT
T ss_pred             ccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhH-HHHHHHHhc----cCCCCCHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999887654322222 222222111    12346789999999999


Q ss_pred             CCceeEEEe
Q 026688          212 GLVDFKCTR  220 (235)
Q Consensus       212 Gf~~~~~~~  220 (235)
                      ||+.+....
T Consensus       210 Gf~~i~~~d  218 (282)
T d2o57a1         210 GLVTLRTFS  218 (282)
T ss_dssp             TEEEEEEEE
T ss_pred             CCceEEEEE
Confidence            998877653

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.1e-25  Score=170.73  Aligned_cols=168  Identities=16%  Similarity=0.136  Sum_probs=136.7

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      |...+.++.+.+.+...++.+|||||||+|..+..+++..+ +.|+|+|+|+.+++.|+++....++  ..++++..+|+
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl--~~~v~~~~~d~   92 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDA   92 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhc--cccchhhhhHH
Confidence            45677888899999999999999999999999999988753 6999999999999999999888765  45799999999


Q ss_pred             ccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHH
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  203 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (235)
                      .+.. ++++||+|++..+++|++++.++++++.++|||||.+++.++......    ........+. ......+.+..+
T Consensus        93 ~~~~-~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~  166 (245)
T d1nkva_          93 AGYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLP----ATEEIAQACG-VSSTSDFLTLPG  166 (245)
T ss_dssp             TTCC-CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCC----SSHHHHHTTT-CSCGGGSCCHHH
T ss_pred             hhcc-ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCC----ChHHHHHHhc-cCCCcccCCHHH
Confidence            8874 578999999999999999999999999999999999999887653321    1122222211 222334678899


Q ss_pred             HHHHHHHcCCceeEEEe
Q 026688          204 IEDLCRACGLVDFKCTR  220 (235)
Q Consensus       204 ~~~~l~~~Gf~~~~~~~  220 (235)
                      +...++++||+++....
T Consensus       167 ~~~~~~~aG~~~v~~~~  183 (245)
T d1nkva_         167 LVGAFDDLGYDVVEMVL  183 (245)
T ss_dssp             HHHHHHTTTBCCCEEEE
T ss_pred             HHHHHHHcCCEEEEEEe
Confidence            99999999999876543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.94  E-value=4.4e-25  Score=165.21  Aligned_cols=184  Identities=14%  Similarity=0.131  Sum_probs=132.3

Q ss_pred             CCCHHHHHHHHhhcC--CCCCCeEEEecCCCchHHHHHHHc--CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEE
Q 026688           44 PGPEKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  119 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~  119 (235)
                      |......+.+...+.  ..++.+|||+|||+|..+..+++.  .+..+|+|+|+|+.|++.|++++...+.  ..++.+.
T Consensus        20 P~Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~--~~~~~~~   97 (225)
T d1im8a_          20 PGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEIL   97 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC--SSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc--cchhhhc
Confidence            333444444433322  234789999999999999999886  3677999999999999999999877643  4567888


Q ss_pred             ecccccCCCCCCceeEEEecccccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh---c--
Q 026688          120 RADISRLPFASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---I--  192 (235)
Q Consensus       120 ~~d~~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~---~--  192 (235)
                      ..|..+.+  ...+|+|++..+++|++  ++.+++++++++|+|||.+++.++..................+..   .  
T Consensus        98 ~~d~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
T d1im8a_          98 CNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSE  175 (225)
T ss_dssp             CSCTTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGG
T ss_pred             cchhhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCH
Confidence            88887655  46889999999999985  556999999999999999999987754322222221111111110   0  


Q ss_pred             ----------CCceeecCHHHHHHHHHHcCCceeEEE-eeCcEEEEEEec
Q 026688          193 ----------SGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATK  231 (235)
Q Consensus       193 ----------~~~~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~~~~~~~k  231 (235)
                                ......++.+++.++|+++||+.+++. ..-.+..++|+|
T Consensus       176 ~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         176 LEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             STTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence                      011345788999999999999988775 444677788876

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.7e-25  Score=165.62  Aligned_cols=137  Identities=21%  Similarity=0.340  Sum_probs=112.3

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      ..+|||||||+|.++..+.      +++|+|+|+.+++.|+++          ++.+.++|+.++++++++||+|++..+
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----------~~~~~~~d~~~l~~~~~~fD~I~~~~~  100 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTT  100 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----------ccccccccccccccccccccccccccc
Confidence            5689999999999988773      568999999999999863          578999999999988899999999999


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH--hhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          142 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--MQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       142 l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                      ++|++++.++++++.++|+|||.+++.+++....     +........  .....+..+++.+++.++|+++||+++++.
T Consensus       101 l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~  175 (208)
T d1vlma_         101 ICFVDDPERALKEAYRILKKGGYLIVGIVDRESF-----LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV  175 (208)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             cccccccccchhhhhhcCCCCceEEEEecCCcch-----hHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence            9999999999999999999999999999876421     111111111  123345668899999999999999987765

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-25  Score=165.41  Aligned_cols=148  Identities=16%  Similarity=0.140  Sum_probs=121.2

Q ss_pred             CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      ...+..+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.|++++...+   ..++++.++|+.+++++.++||+|+
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~---~~~~~f~~~d~~~~~~~~~~fD~I~  132 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIW  132 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEE
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccc---ccccccccccccccccccccccccc
Confidence            344568999999999999998876654 489999999999999999987654   3468999999999888789999999


Q ss_pred             ecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCce
Q 026688          138 AGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  215 (235)
Q Consensus       138 ~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  215 (235)
                      +..+++|+++++  +++++++++|+|||.+++.+.........            ....+...++.+++.++++++||++
T Consensus       133 ~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~aGf~i  200 (222)
T d2ex4a1         133 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL------------DDVDSSVCRDLDVVRRIICSAGLSL  200 (222)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEE------------ETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred             cccccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccccc------------ccCCceeeCCHHHHHHHHHHcCCEE
Confidence            999999998774  79999999999999999998765431111            1123445678999999999999999


Q ss_pred             eEEEee
Q 026688          216 FKCTRN  221 (235)
Q Consensus       216 ~~~~~~  221 (235)
                      ++....
T Consensus       201 i~~~~q  206 (222)
T d2ex4a1         201 LAEERQ  206 (222)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            887653

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.92  E-value=2.4e-24  Score=163.57  Aligned_cols=154  Identities=12%  Similarity=0.054  Sum_probs=123.5

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      ...+++.+...+..+|||+|||+|..+..++..+. ..|+++|+++.+++.|++++..     ..++++.+.|+.+++++
T Consensus        82 s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~-----~~~~~~~~~d~~~~~~~  155 (254)
T d1xtpa_          82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG-----MPVGKFILASMETATLP  155 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT-----SSEEEEEESCGGGCCCC
T ss_pred             HHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc-----cccceeEEccccccccC
Confidence            34556666667788999999999999998876643 3899999999999999988754     34689999999998887


Q ss_pred             CCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  207 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (235)
                      .++||+|++..+++|+++++  ++++++++.|+|||.+++.+..........           ....+...++.++++++
T Consensus       156 ~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~-----------d~~d~~~~rs~~~~~~l  224 (254)
T d1xtpa_         156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV-----------DKEDSSLTRSDIHYKRL  224 (254)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE-----------ETTTTEEEBCHHHHHHH
T ss_pred             CCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCccee-----------cccCCceeCCHHHHHHH
Confidence            88999999999999998874  789999999999999999887543211100           01123446789999999


Q ss_pred             HHHcCCceeEEEe
Q 026688          208 CRACGLVDFKCTR  220 (235)
Q Consensus       208 l~~~Gf~~~~~~~  220 (235)
                      ++++||++++...
T Consensus       225 ~~~aGf~ii~~~~  237 (254)
T d1xtpa_         225 FNESGVRVVKEAF  237 (254)
T ss_dssp             HHHHTCCEEEEEE
T ss_pred             HHHcCCEEEEEEe
Confidence            9999999988765

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.92  E-value=3.6e-24  Score=160.16  Aligned_cols=148  Identities=12%  Similarity=0.100  Sum_probs=116.3

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +++|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++.       ..++.+..+|+.+.++ +++||+|++..+
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~-~~~fD~I~~~~v   90 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQL-PRRYDNIVLTHV   90 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCCC-SSCEEEEEEESC
T ss_pred             CCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhccc-------cccccccccccccccc-ccccccccccce
Confidence            67899999999999999998876  8999999999999999875       3368899999988765 578999999999


Q ss_pred             ccccCChHHHHHHHH-HhccCCcEEEEEEeccCCCcccchhHHHHH------HhHhhcCCceeecCHHHHHHHHHHcCCc
Q 026688          142 IHCWSSPSTGVAEIS-RVLRPGGVFVGTTYIVDGPFNLIPFSRLLR------QNMMQISGSYTFLSEREIEDLCRACGLV  214 (235)
Q Consensus       142 l~~~~~~~~~l~~~~-~~L~pgG~li~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  214 (235)
                      ++|++++..+++++. ++|+|||.+++..++...............      ........+.+.++.++++++++++||+
T Consensus        91 leh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~  170 (225)
T d2p7ia1          91 LEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ  170 (225)
T ss_dssp             GGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred             eEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCE
Confidence            999999999999998 799999999999887543110000000000      0001123466788999999999999999


Q ss_pred             eeEEE
Q 026688          215 DFKCT  219 (235)
Q Consensus       215 ~~~~~  219 (235)
                      ++...
T Consensus       171 i~~~~  175 (225)
T d2p7ia1         171 VTYRS  175 (225)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87754

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.92  E-value=1.3e-23  Score=159.71  Aligned_cols=177  Identities=13%  Similarity=0.143  Sum_probs=132.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+.+.+.....++|||||||+|.++..+++++|..+++++|+ +.+++.+++++...+.  ..++++..+|+.+. .
T Consensus        68 ~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~rv~~~~~D~~~~-~  143 (253)
T d1tw3a2          68 AFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL--SDRVDVVEGDFFEP-L  143 (253)
T ss_dssp             TTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC--TTTEEEEECCTTSC-C
T ss_pred             HHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc--ccchhhccccchhh-c
Confidence            345666666666678999999999999999999999999999998 6799999999988765  56899999998653 2


Q ss_pred             CCCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHh-HhhcCCceeecCHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-MMQISGSYTFLSEREIE  205 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  205 (235)
                      + .+||+|++..++||+++.+  ++|++++++|+|||.|++.+...............+... +...  ....+|.++|+
T Consensus       144 ~-~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~--~g~~rt~~e~~  220 (253)
T d1tw3a2         144 P-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFL--GGALRTREKWD  220 (253)
T ss_dssp             S-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHH--SCCCCBHHHHH
T ss_pred             c-cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhC--CCcCCCHHHHH
Confidence            2 5799999999999998774  789999999999999999887553322222222211111 1111  23346899999


Q ss_pred             HHHHHcCCceeEEEeeC-----cEEEEEEecC
Q 026688          206 DLCRACGLVDFKCTRNR-----GFVMFTATKP  232 (235)
Q Consensus       206 ~~l~~~Gf~~~~~~~~~-----~~~~~~~~k~  232 (235)
                      ++++++||+++++...+     ....++..+|
T Consensus       221 ~ll~~AGf~~~~v~~~~~p~~~~~~~li~~~P  252 (253)
T d1tw3a2         221 GLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP  252 (253)
T ss_dssp             HHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             HHHHHCCCeEEEEEECCCCCCCccEEEEEEec
Confidence            99999999988876432     2344555554

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.91  E-value=2.3e-23  Score=158.29  Aligned_cols=168  Identities=15%  Similarity=0.096  Sum_probs=126.4

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      ...+.+.++.....+|||||||+|.++..+++++|..+++++|+ +++++.+++++...+.  ..++.+...|+.+ +.+
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~--~~ri~~~~~d~~~-~~p  145 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL--ADRVTVAEGDFFK-PLP  145 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTS-CCS
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC--cceeeeeeeeccc-ccc
Confidence            34555566655678999999999999999999999999999998 7899999999887765  5689999999875 333


Q ss_pred             CCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  207 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (235)
                       ..+|+|++..++|++++.+  ++|++++++|+|||.++|.+..........+....+.............+|.++|+++
T Consensus       146 -~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~l  224 (256)
T d1qzza2         146 -VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDL  224 (256)
T ss_dssp             -CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred             -ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHH
Confidence             4699999999999998764  7899999999999999998875433223333323222211111112345789999999


Q ss_pred             HHHcCCceeEEEeeC
Q 026688          208 CRACGLVDFKCTRNR  222 (235)
Q Consensus       208 l~~~Gf~~~~~~~~~  222 (235)
                      ++++||+++++...+
T Consensus       225 l~~AGf~~~~~~~~~  239 (256)
T d1qzza2         225 AGSAGLALASERTSG  239 (256)
T ss_dssp             HHTTTEEEEEEEEEC
T ss_pred             HHHCCCceeEEEEeC
Confidence            999999998887544

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.90  E-value=1.9e-22  Score=147.79  Aligned_cols=153  Identities=22%  Similarity=0.269  Sum_probs=115.7

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ..+++|||+|||+|..+..+++++.  +|+|+|+|+.+++.++++....+   ..++.+...|+...++ +++||+|++.
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~~fD~I~~~  102 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEG---LDNLQTDLVDLNTLTF-DGEYDFILST  102 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CTTEEEEECCTTTCCC-CCCEEEEEEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhcc---ccchhhhheecccccc-cccccEEEEe
Confidence            3457999999999999999999987  99999999999999999887765   3578999999988765 5889999999


Q ss_pred             ccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeE
Q 026688          140 AAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK  217 (235)
Q Consensus       140 ~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  217 (235)
                      .+++|++..  .++++++.++|+|||.+++.........   +          ........++..++.+.+  +||+++.
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~---~----------~~~~~~~~~~~~el~~~~--~~~~i~~  167 (198)
T d2i6ga1         103 VVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF---P----------CTVGFPFAFKEGELRRYY--EGWDMLK  167 (198)
T ss_dssp             SCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC----------------------CCCCBCTTHHHHHT--TTSEEEE
T ss_pred             eeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccC---C----------CCCCCCCccCHHHHHHHh--CCCeEEE
Confidence            999999765  4899999999999999999876542110   0          011223446677777776  4777654


Q ss_pred             EEe---------------eCcEEEEEEecCC
Q 026688          218 CTR---------------NRGFVMFTATKPS  233 (235)
Q Consensus       218 ~~~---------------~~~~~~~~~~k~~  233 (235)
                      ...               .-.+..++++|++
T Consensus       168 ~~e~~~~~~~~~~~~~~~~~~~~~~varK~a  198 (198)
T d2i6ga1         168 YNEDVGELHRTDENGNRIKLRFATMLARKTA  198 (198)
T ss_dssp             EEEEECCC------------EEEEEEEECCC
T ss_pred             eeeccceeeecCCCCcEeeEEEEEEEEEeCC
Confidence            331               1124678888874

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.90  E-value=1.4e-22  Score=153.51  Aligned_cols=165  Identities=16%  Similarity=0.141  Sum_probs=119.5

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec-
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-  139 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~-  139 (235)
                      ++++|||+|||+|.++..+++++.  +|+|+|+|+.|++.|+++....+    .++++.++|+.++++ .++||+|+|. 
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~----~~v~~~~~d~~~~~~-~~~fD~i~~~~  109 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISNLNI-NRKFDLITCCL  109 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGGCCC-SCCEEEEEECT
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccC----ccceeeccchhhhcc-cccccccceee
Confidence            367999999999999999999986  89999999999999999887653    378999999998875 4689999986 


Q ss_pred             ccccccCCh---HHHHHHHHHhccCCcEEEEEEeccCC---CcccchhH---HHHHH----------------hH-----
Q 026688          140 AAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDG---PFNLIPFS---RLLRQ----------------NM-----  189 (235)
Q Consensus       140 ~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~~---~~~~~~~~---~~~~~----------------~~-----  189 (235)
                      .+++|+.++   .++++++++.|+|||.+++...+...   ......+.   .....                .+     
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (246)
T d1y8ca_         110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGE  189 (246)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSS
T ss_pred             eeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhcccCceeecCCcEEEEEeeccCCcceeEEEEEEEecCC
Confidence            677887655   47899999999999999986654311   00000000   00000                00     


Q ss_pred             --hhc--CCceeecCHHHHHHHHHHcCCceeEEEe---------eCcEEEEEEecC
Q 026688          190 --MQI--SGSYTFLSEREIEDLCRACGLVDFKCTR---------NRGFVMFTATKP  232 (235)
Q Consensus       190 --~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~---------~~~~~~~~~~k~  232 (235)
                        ...  ....+.++.++++++++++||+.+....         .+...+++++|.
T Consensus       190 ~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~~~~~~~~~~~s~r~~~v~kk~  245 (246)
T d1y8ca_         190 FYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG  245 (246)
T ss_dssp             SEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred             ceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCceEEEEEEec
Confidence              000  0013457899999999999999877652         234567888874

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.89  E-value=1.2e-22  Score=156.51  Aligned_cols=171  Identities=13%  Similarity=0.130  Sum_probs=123.2

Q ss_pred             HHHHHHHHhhc-CCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           47 EKEFELMKGYL-KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        47 ~~~~~~i~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      +..++.+.+.+ ....+.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|+++....+    .++++.+.|+.
T Consensus        12 ~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~----~~~~f~~~d~~   87 (281)
T d2gh1a1          12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDAT   87 (281)
T ss_dssp             HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS----SEEEEEESCTT
T ss_pred             HHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc----ccccccccccc
Confidence            34445555543 445578999999999999999998765 3689999999999999999887653    36899999999


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCC--------Ccccch--hHHHHHHhHhh---
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG--------PFNLIP--FSRLLRQNMMQ---  191 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~--------~~~~~~--~~~~~~~~~~~---  191 (235)
                      +.+++ ++||+|++..+++|++++..+++++.++|||||.+++.++....        ......  ....+...+..   
T Consensus        88 ~~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (281)
T d2gh1a1          88 EIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQ  166 (281)
T ss_dssp             TCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHH
T ss_pred             ccccc-CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHH
Confidence            88764 67999999999999999999999999999999999998864211        000000  01111111111   


Q ss_pred             cCCceeecCHHHHHHHHHHcCCceeEEEeeCc
Q 026688          192 ISGSYTFLSEREIEDLCRACGLVDFKCTRNRG  223 (235)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  223 (235)
                      ..+ .......++..+|+++||+.+++.....
T Consensus       167 ~~~-~~~~i~~~l~~~l~eaGf~~i~~~~~~~  197 (281)
T d2gh1a1         167 RNG-KDGNIGMKIPIYLSELGVKNIECRVSDK  197 (281)
T ss_dssp             TTC-CCTTGGGTHHHHHHHTTCEEEEEEECCC
T ss_pred             HcC-CCCCHHHHHHHHHHHcCCeEEEEEEecc
Confidence            111 1111124678899999999988765443

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=8.1e-23  Score=155.21  Aligned_cols=115  Identities=23%  Similarity=0.351  Sum_probs=95.8

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      ++.+.......+.++|||+|||+|..+..+++++.  +|+|+|+|+.|++.|++++...+    .++++.++|+.+++++
T Consensus        30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~~----~~i~~~~~d~~~l~~~  103 (251)
T d1wzna1          30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAFK  103 (251)
T ss_dssp             HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCCC
T ss_pred             HHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce--EEEEEeecccccccccccccccc----ccchheehhhhhcccc
Confidence            34444445556678999999999999999999876  89999999999999999987753    3799999999999876


Q ss_pred             CCceeEEEec-ccccccC--ChHHHHHHHHHhccCCcEEEEEEec
Q 026688          130 SSSIDAVHAG-AAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       130 ~~~~D~i~~~-~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                       ++||+|+|. .+++|+.  +..++|++++++|+|||.+++..++
T Consensus       104 -~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         104 -NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             -SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence             689999986 4667664  3458999999999999999987654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=1.3e-22  Score=151.55  Aligned_cols=106  Identities=27%  Similarity=0.465  Sum_probs=94.5

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      +..+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++....+    ..+.+++.|+.+++++.++||+|+|..
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~~----~~~~~~~~d~~~l~~~~~~fD~I~~~~  110 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDKTFDYVIFID  110 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CCCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhcccc----ccccccccccccccccCcCceEEEEec
Confidence            468999999999999999999865  99999999999999999887653    367889999999998889999999999


Q ss_pred             cccccC--ChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          141 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       141 ~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      +++|++  +..++++++.++|||||.+++..++.
T Consensus       111 ~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~  144 (226)
T d1ve3a1         111 SIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL  144 (226)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             chhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence            999997  45689999999999999999987653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=5.3e-22  Score=152.17  Aligned_cols=167  Identities=12%  Similarity=0.126  Sum_probs=126.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+++.+...++.+|||||||.|.++..+++.. .++|+|+|+|+.+++.|++++...++  ..++.+...|..+.  
T Consensus        40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l--~~~~~~~~~d~~~~--  114 (280)
T d2fk8a1          40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDT--NRSRQVLLQGWEDF--  114 (280)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCC--SSCEEEEESCGGGC--
T ss_pred             HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhcc--ccchhhhhhhhhhh--
Confidence            45677888888889999999999999999988774 35999999999999999999988765  45677777787654  


Q ss_pred             CCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccc----hh---HHHHHHhHhh-cCCceee
Q 026688          129 ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLI----PF---SRLLRQNMMQ-ISGSYTF  198 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~----~~---~~~~~~~~~~-~~~~~~~  198 (235)
                       .++||.|++..+++|+...  ..+++++.++|||||.+++.+..........    ..   .......+.. ..+....
T Consensus       115 -~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~l  193 (280)
T d2fk8a1         115 -AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL  193 (280)
T ss_dssp             -CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred             -ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcc
Confidence             3689999999999999765  6899999999999999999876543211000    00   0011111111 2222345


Q ss_pred             cCHHHHHHHHHHcCCceeEEEee
Q 026688          199 LSEREIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~~~  221 (235)
                      .+.+++...++++||++..+...
T Consensus       194 PS~~~l~~~~e~aGf~v~~~~~~  216 (280)
T d2fk8a1         194 PSTEMMVEHGEKAGFTVPEPLSL  216 (280)
T ss_dssp             CCHHHHHHHHHHTTCBCCCCEEC
T ss_pred             cchHhhhhhHHhhccccceeeec
Confidence            78899999999999998776654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=3.3e-21  Score=147.68  Aligned_cols=167  Identities=17%  Similarity=0.153  Sum_probs=129.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+.+.+...++.+|||||||.|.++..+++.. .++|+|+++|+..++.|+++....++  ..++++...|..+.+ 
T Consensus        50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~--~~~v~~~~~d~~~~~-  125 (285)
T d1kpga_          50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSEN--LRSKRVLLAGWEQFD-  125 (285)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCC--CSCEEEEESCGGGCC-
T ss_pred             HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhh--hhhhHHHHhhhhccc-
Confidence            34677888888999999999999999999988876 47999999999999999999888766  568999999987764 


Q ss_pred             CCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcc----cchh---HHHHHHhHhh-cCCceee
Q 026688          129 ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFN----LIPF---SRLLRQNMMQ-ISGSYTF  198 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~----~~~~---~~~~~~~~~~-~~~~~~~  198 (235)
                        ++||.|++..+++|+...  ..+++++.++|+|||.+++.+.....+..    ..+.   .......+.. ..+....
T Consensus       126 --~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~l  203 (285)
T d1kpga_         126 --EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL  203 (285)
T ss_dssp             --CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred             --ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCC
Confidence              689999999999999644  78999999999999999998876432110    0111   1111111111 1223345


Q ss_pred             cCHHHHHHHHHHcCCceeEEEee
Q 026688          199 LSEREIEDLCRACGLVDFKCTRN  221 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~~~  221 (235)
                      .+..++..+++++||++..+...
T Consensus       204 Psl~~~~~~~e~agf~v~~~~~~  226 (285)
T d1kpga_         204 PSIPMVQECASANGFTVTRVQSL  226 (285)
T ss_dssp             CCHHHHHHHHHTTTCEEEEEEEC
T ss_pred             CChhhHHHHHHHhchhhcccccc
Confidence            68899999999999999887654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=4.5e-21  Score=147.35  Aligned_cols=168  Identities=13%  Similarity=0.070  Sum_probs=128.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+.+.+...++.+|||||||.|.++..++++.+ ++|+|+++|+..++.+++++...++  ..++.+...|...   
T Consensus        49 k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l--~~~v~~~~~d~~~---  122 (291)
T d1kpia_          49 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWEE---  122 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCC--SSCEEEEECCGGG---
T ss_pred             HHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhcc--chhhhhhhhcccc---
Confidence            356777888889999999999999999999987753 5999999999999999999988776  4578888777643   


Q ss_pred             CCCceeEEEecccccccCCh---------HHHHHHHHHhccCCcEEEEEEeccCCCcc------cchh-HHHHHHhHhh-
Q 026688          129 ASSSIDAVHAGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYIVDGPFN------LIPF-SRLLRQNMMQ-  191 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~---------~~~l~~~~~~L~pgG~li~~~~~~~~~~~------~~~~-~~~~~~~~~~-  191 (235)
                      .+++||.|++..+++|+.+.         ..+++++.++|||||.+++.+........      ..|. .......+.. 
T Consensus       123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~ky  202 (291)
T d1kpia_         123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE  202 (291)
T ss_dssp             CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHH
Confidence            45789999999999999863         58999999999999999998887532100      0110 0111111111 


Q ss_pred             cCCceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688          192 ISGSYTFLSEREIEDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  222 (235)
                      ..+.....+..++...++++||++......+
T Consensus       203 iFpgg~lps~~~~~~~~e~~gl~v~~~~~~~  233 (291)
T d1kpia_         203 IFPGGRLPRISQVDYYSSNAGWKVERYHRIG  233 (291)
T ss_dssp             TCTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             hcCCCCCCCHHHHHhhhcccccccceeeecc
Confidence            2223446688999999999999988877654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=3.1e-21  Score=145.32  Aligned_cols=145  Identities=14%  Similarity=0.185  Sum_probs=115.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      .++.+.....  ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|++++..++.    +.++.++|+... .
T Consensus       110 ~l~~l~~~~~--~g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~n~~----~~~~~~~d~~~~-~  180 (254)
T d2nxca1         110 ALKALARHLR--PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGV----RPRFLEGSLEAA-L  180 (254)
T ss_dssp             HHHHHHHHCC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTC----CCEEEESCHHHH-G
T ss_pred             HHHHHHhhcC--ccCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHHcCC----ceeEEecccccc-c
Confidence            3444444443  488999999999999999998875  899999999999999999887653    567888888653 4


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      +.++||+|+++...+.   ...+++++.++|||||+++++....                          ...+++.+.+
T Consensus       181 ~~~~fD~V~ani~~~~---l~~l~~~~~~~LkpGG~lilSgil~--------------------------~~~~~v~~~~  231 (254)
T d2nxca1         181 PFGPFDLLVANLYAEL---HAALAPRYREALVPGGRALLTGILK--------------------------DRAPLVREAM  231 (254)
T ss_dssp             GGCCEEEEEEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEG--------------------------GGHHHHHHHH
T ss_pred             cccccchhhhcccccc---HHHHHHHHHHhcCCCcEEEEEecch--------------------------hhHHHHHHHH
Confidence            4689999998755443   3567889999999999999976532                          1346788899


Q ss_pred             HHcCCceeEEEeeCcEEEEEEec
Q 026688          209 RACGLVDFKCTRNRGFVMFTATK  231 (235)
Q Consensus       209 ~~~Gf~~~~~~~~~~~~~~~~~k  231 (235)
                      +++||++++....+.+..++.+|
T Consensus       232 ~~~Gf~~~~~~~~~~Wv~l~~~r  254 (254)
T d2nxca1         232 AGAGFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             HHTTCEEEEEEEETTEEEEEEEC
T ss_pred             HHCCCEEEEEEEECCEEEEEEeC
Confidence            99999999998888887777765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.1e-21  Score=147.46  Aligned_cols=155  Identities=10%  Similarity=0.044  Sum_probs=111.5

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHc----CC--CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc------C
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKS----GL--FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR------L  126 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~----~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~------~  126 (235)
                      ..+..+|||||||+|.++..+++.    ++  ...++|+|+|+.+++.+++++..........+.+...++.+      .
T Consensus        38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence            334458999999999998877654    22  34689999999999999999866432111223444444432      2


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh--cCCceeecCHHHH
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSEREI  204 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  204 (235)
                      +.+.++||+|++..+++|++++..+++++.++|+|||.+++..+....     .+...+...+..  ...+..+++..++
T Consensus       118 ~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~  192 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS-----GWDKLWKKYGSRFPQDDLCQYITSDDL  192 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS-----HHHHHHHHHGGGSCCCTTSCCCCHHHH
T ss_pred             cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc-----hHHHHHHHHHHhcCCCcccccCCHHHH
Confidence            345789999999999999999999999999999999999998876432     222222222222  2234567889999


Q ss_pred             HHHHHHcCCceeEE
Q 026688          205 EDLCRACGLVDFKC  218 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~  218 (235)
                      .++|.+.||.....
T Consensus       193 ~~~L~~~G~~~~~~  206 (280)
T d1jqea_         193 TQMLDNLGLKYECY  206 (280)
T ss_dssp             HHHHHHHTCCEEEE
T ss_pred             HHHHHHCCCceEEE
Confidence            99999999985443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=1.9e-21  Score=146.95  Aligned_cols=101  Identities=29%  Similarity=0.366  Sum_probs=89.5

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec-
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-  139 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~-  139 (235)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++..         ..++.+|+.++++++++||+|++. 
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~---------~~~~~~~~~~l~~~~~~fD~ii~~~  110 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV---------KNVVEAKAEDLPFPSGAFEAVLALG  110 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC---------SCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             CCCEEEEECCCCchhcccccccce--EEEEeecccccccccccccc---------cccccccccccccccccccceeeec
Confidence            368999999999999999998865  99999999999999998632         235778999999888999999985 


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .+++|++++.++++++.++|+|||.+++..++.
T Consensus       111 ~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         111 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             chhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence            689999999999999999999999999988754

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.5e-22  Score=150.30  Aligned_cols=162  Identities=18%  Similarity=0.263  Sum_probs=113.7

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCC-------------------------
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-------------------------  114 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-------------------------  114 (235)
                      .++.+|||+|||+|.++..++..+ ...|+|+|+|+.+++.|++++.........                         
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            346899999999999887777664 347999999999999999988654310000                         


Q ss_pred             -Ce-eEEeccc----ccCCCCCCceeEEEecccccccCC----hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHH
Q 026688          115 -NF-LLVRADI----SRLPFASSSIDAVHAGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL  184 (235)
Q Consensus       115 -~~-~~~~~d~----~~~~~~~~~~D~i~~~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~  184 (235)
                       .+ .....+.    ...+++.++||+|++..+++|+..    ...+++++.++|||||.+++.++......  ..    
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~--~~----  202 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSY--MV----  202 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE--EE----
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccc--ee----
Confidence             00 1111111    112456789999999999999863    35789999999999999999988654211  00    


Q ss_pred             HHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe-----------eCcEEEEEEecCC
Q 026688          185 LRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR-----------NRGFVMFTATKPS  233 (235)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-----------~~~~~~~~~~k~~  233 (235)
                           .....+...++.++++++|+++||+++++..           .....+++++|++
T Consensus       203 -----~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKkp  257 (257)
T d2a14a1         203 -----GKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP  257 (257)
T ss_dssp             -----TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred             -----ccccccccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeCc
Confidence                 0011124468999999999999999877742           2345677788764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=2e-20  Score=135.38  Aligned_cols=121  Identities=20%  Similarity=0.203  Sum_probs=105.1

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      |...+....++..+.+.++.+|||+|||+|.++..+++.++  +|+++|+++.+++.|++++...++  ..+++++++|+
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl--~~~v~~~~gda   91 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGL--GDNVTLMEGDA   91 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTC--CTTEEEEESCH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCC--CcceEEEECch
Confidence            45677888899999999999999999999999999998765  999999999999999999988775  45899999999


Q ss_pred             ccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .+...+...||+|++....++   ...+++.+.+.|+|||++++....
T Consensus        92 ~~~~~~~~~~D~v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          92 PEALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             HHHHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             hhcccccCCcCEEEEeCcccc---chHHHHHHHHHhCcCCEEEEEeec
Confidence            887666789999999876654   467899999999999999887654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.86  E-value=2e-20  Score=136.36  Aligned_cols=118  Identities=13%  Similarity=0.138  Sum_probs=99.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ..+.+++.+...++.+|||+|||+|.++..+++.++  +|+++|+|+.+++.+++++..++.. ..++++...|+.+ ++
T Consensus        40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~-~~~i~~~~~d~~~-~~  115 (194)
T d1dusa_          40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLD-NYDIRVVHSDLYE-NV  115 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCT-TSCEEEEECSTTT-TC
T ss_pred             HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCc-cceEEEEEcchhh-hh
Confidence            345677788888899999999999999999999877  9999999999999999998876542 3468999999876 45


Q ss_pred             CCCceeEEEecccccccCCh-HHHHHHHHHhccCCcEEEEEEe
Q 026688          129 ASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~-~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +++.||+|+++..+++..+. +.+++++.+.|+|||.+++...
T Consensus       116 ~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  158 (194)
T d1dusa_         116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence            67899999999888776554 6789999999999999987654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-20  Score=141.48  Aligned_cols=153  Identities=17%  Similarity=0.124  Sum_probs=118.5

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCC--------------C
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--------------F  111 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--------------~  111 (235)
                      ...+.+.+.+.+...++.+|||+|||+|..+..|++++.  +|+|+|+|+.+++.|+++....+.              .
T Consensus        30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            445556777777777789999999999999999999987  999999999999999987653210              0


Q ss_pred             CCCCeeEEecccccCC-CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHh
Q 026688          112 PKENFLLVRADISRLP-FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN  188 (235)
Q Consensus       112 ~~~~~~~~~~d~~~~~-~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~  188 (235)
                      ...++++.++|+.+++ ...+.||+|+...+++|++..  ..+++++.++|+|||.+++.....+...            
T Consensus       108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~------------  175 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTK------------  175 (229)
T ss_dssp             TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTT------------
T ss_pred             cCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCC------------
Confidence            1347899999998764 456789999999999998643  5899999999999999998887754211            


Q ss_pred             HhhcCCceeecCHHHHHHHHHHcCCcee
Q 026688          189 MMQISGSYTFLSEREIEDLCRACGLVDF  216 (235)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  216 (235)
                         ..+....++.+++.+++.. +|.+.
T Consensus       176 ---~~gpp~~~~~~el~~lf~~-~~~i~  199 (229)
T d2bzga1         176 ---HPGPPFYVPHAEIERLFGK-ICNIR  199 (229)
T ss_dssp             ---CCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred             ---CCCCCCCCCHHHHHHHhcC-CCEEE
Confidence               1122345788999999864 56543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.85  E-value=3.1e-20  Score=138.10  Aligned_cols=163  Identities=12%  Similarity=0.072  Sum_probs=124.0

Q ss_pred             CHHHHHHHHh---hcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           46 PEKEFELMKG---YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        46 ~~~~~~~i~~---~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      ..++...+..   .+...++.+|||+|||+|..+.++++..+...|+|+|+|+.+++.++++...     ..++..+..|
T Consensus        56 rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-----~~ni~~i~~d  130 (230)
T d1g8sa_          56 KSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----RENIIPILGD  130 (230)
T ss_dssp             TCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----CTTEEEEECC
T ss_pred             ccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-----hcccceEEEe
Confidence            4456566654   4456789999999999999999999998888999999999999999998665     3467778888


Q ss_pred             cccC-CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688          123 ISRL-PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE  201 (235)
Q Consensus       123 ~~~~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (235)
                      .... ++....+|++++...+++..++..+++++.+.|||||.+++......... ..+..                ...
T Consensus       131 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~-~~~~~----------------~~~  193 (230)
T d1g8sa_         131 ANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDV-TKDPK----------------EIF  193 (230)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCS-SSCHH----------------HHH
T ss_pred             eccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCC-CCCHH----------------HHH
Confidence            7664 34456778888888888888888999999999999999999876553211 11111                123


Q ss_pred             HHHHHHHHHcCCceeEEEeeCc----EEEEEEe
Q 026688          202 REIEDLCRACGLVDFKCTRNRG----FVMFTAT  230 (235)
Q Consensus       202 ~~~~~~l~~~Gf~~~~~~~~~~----~~~~~~~  230 (235)
                      ++..+.|+++||++++.....+    ..++++.
T Consensus       194 ~e~~~~L~~aGF~ive~idL~py~~~H~~vvg~  226 (230)
T d1g8sa_         194 KEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGI  226 (230)
T ss_dssp             HHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred             HHHHHHHHHcCCEEEEEecCCCCcCCeEEEEEE
Confidence            5678899999999988875432    5566654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=1.6e-20  Score=141.62  Aligned_cols=134  Identities=19%  Similarity=0.217  Sum_probs=115.4

Q ss_pred             eecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCC
Q 026688           34 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP  112 (235)
Q Consensus        34 w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~  112 (235)
                      |...+.+............|..++...|+.+|||+|||+|.++..+++. +|.++|+++|+++++++.|++++.......
T Consensus        69 ~~~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~  148 (264)
T d1i9ga_          69 YVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP  148 (264)
T ss_dssp             HHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHhhccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCC
Confidence            4445555666678889999999999999999999999999999999987 788899999999999999999887642222


Q ss_pred             CCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          113 KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       113 ~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ..++.+.+.|+.+.+++++.||.|++     ++++|..++.++.++|||||.+++..++.
T Consensus       149 ~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         149 PDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             CTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CceEEEEecccccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence            46899999999988888899999985     68999999999999999999999877653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=1.1e-20  Score=141.72  Aligned_cols=126  Identities=19%  Similarity=0.151  Sum_probs=94.7

Q ss_pred             cccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe
Q 026688           38 FVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENF  116 (235)
Q Consensus        38 ~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~  116 (235)
                      +.+....-.......|+..+...|+.+|||+|||+|.++..+++. ++.++|+++|.++++++.|++++...+.  ..++
T Consensus        62 ~~r~~qiiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~--~~nv  139 (250)
T d1yb2a1          62 IRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD--IGNV  139 (250)
T ss_dssp             C------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC--CTTE
T ss_pred             CCCCCcccCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC--CCce
Confidence            333333445566778888999999999999999999999999986 6778999999999999999999987644  5689


Q ss_pred             eEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       117 ~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ++...|+.+. ++++.||.|++     +++++..+++++.++|||||.+++..++
T Consensus       140 ~~~~~Di~~~-~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         140 RTSRSDIADF-ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             EEECSCTTTC-CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             EEEEeeeecc-cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCC
Confidence            9999999875 45688999985     5788889999999999999999986654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.84  E-value=2e-20  Score=136.88  Aligned_cols=122  Identities=15%  Similarity=0.129  Sum_probs=98.4

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC---------CCCCeeEEe
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF---------PKENFLLVR  120 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---------~~~~~~~~~  120 (235)
                      ++.....+...++.+|||+|||+|..+..|++++.  .|+|+|+|+.+++.|+++.......         ....+++.+
T Consensus         9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (201)
T d1pjza_           9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   86 (201)
T ss_dssp             HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence            44456667777899999999999999999999986  9999999999999999987543210         023467888


Q ss_pred             cccccCC-CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          121 ADISRLP-FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       121 ~d~~~~~-~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      +|+.+++ .....||+|++..+++|+.+.  ...++++.++|||||.+++......
T Consensus        87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~  142 (201)
T d1pjza_          87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD  142 (201)
T ss_dssp             ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred             ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence            8887764 334689999999999998754  5899999999999999988776553

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=8.3e-20  Score=139.48  Aligned_cols=99  Identities=26%  Similarity=0.348  Sum_probs=89.7

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .++.+|||+|||+|.++..+++.+++..++|+|+|+.+++.|+++        ..++.+.++|+.++|+++++||+|++.
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~--------~~~~~~~~~d~~~l~~~~~sfD~v~~~  154 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------YPQVTFCVASSHRLPFSDTSMDAIIRI  154 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------CTTSEEEECCTTSCSBCTTCEEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc--------cccccceeeehhhccCCCCCEEEEeec
Confidence            447899999999999999999999888999999999999999876        457899999999999999999999998


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      .+++|       ++++.|+|||||.+++++++.+
T Consensus       155 ~~~~~-------~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         155 YAPCK-------AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             SCCCC-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCHHH-------HHHHHHHhCCCcEEEEEeeCCc
Confidence            88776       5789999999999999998764

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.82  E-value=3.9e-20  Score=140.28  Aligned_cols=109  Identities=19%  Similarity=0.280  Sum_probs=91.9

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCCceeEEEec
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~  139 (235)
                      ++.+|||+|||+|..+..+++.+. .+|+|+|+|+.+++.|+++....+.  ..++.+.++|+...++ ..++||+|+|.
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~--~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKR--RFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCC--SSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCC--CcceEEEEcchhhhcccccccceEEEEc
Confidence            478999999999999999988763 4799999999999999998876543  3478999999976654 46789999999


Q ss_pred             ccccccCCh----HHHHHHHHHhccCCcEEEEEEecc
Q 026688          140 AAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       140 ~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .++||+.++    ..+++++.++|+|||.+++..++.
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~  137 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  137 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence            999997543    478999999999999999987653

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.81  E-value=5e-19  Score=132.62  Aligned_cols=169  Identities=17%  Similarity=0.164  Sum_probs=121.3

Q ss_pred             HHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           50 FELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        50 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      .+.+.+... .....+|||||||+|.++..+++++|..+++..|+ |..++.+       ..  ..++++..+|+.+ +.
T Consensus        69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~--~~ri~~~~gd~~~-~~  137 (244)
T d1fp1d2          69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA-------PP--LSGIEHVGGDMFA-SV  137 (244)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CC--CTTEEEEECCTTT-CC
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc-------CC--CCCeEEecCCccc-cc
Confidence            344555455 34568999999999999999999999999999998 5454322       11  4689999999975 33


Q ss_pred             CCCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhH--HHHHHhHhhcCCceeecCHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS--RLLRQNMMQISGSYTFLSEREI  204 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  204 (235)
                      |  ..|++++..++|++++.+  ++|+++++.|+|||.+++.+...+.........  ..............+.+|.++|
T Consensus       138 p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~  215 (244)
T d1fp1d2         138 P--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQY  215 (244)
T ss_dssp             C--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHH
T ss_pred             c--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHH
Confidence            3  459999999999998764  889999999999999999998764322211111  1111111111112345789999


Q ss_pred             HHHHHHcCCceeEEEe--eCcEEEEEEec
Q 026688          205 EDLCRACGLVDFKCTR--NRGFVMFTATK  231 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~~--~~~~~~~~~~k  231 (235)
                      .++++++||+.+++..  .+...++-++|
T Consensus       216 ~~ll~~AGF~~v~v~~~~~~~~~viE~~K  244 (244)
T d1fp1d2         216 EKLSKLSGFSKFQVACRAFNSLGVMEFYK  244 (244)
T ss_dssp             HHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             HHHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence            9999999999988853  35666777776

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=2.8e-19  Score=135.50  Aligned_cols=150  Identities=19%  Similarity=0.183  Sum_probs=120.8

Q ss_pred             cccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCC
Q 026688           36 QNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKE  114 (235)
Q Consensus        36 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~  114 (235)
                      ..+.+............|..+++..++.+|||+|||+|.++..+++. ++.++|+++|+++++++.|++++...+.  ..
T Consensus        78 ~~~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~--~~  155 (266)
T d1o54a_          78 MNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL--IE  155 (266)
T ss_dssp             HTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC--GG
T ss_pred             hhccCCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc--cc
Confidence            34444445557788999999999999999999999999999999887 4678999999999999999999988765  45


Q ss_pred             CeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCC
Q 026688          115 NFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG  194 (235)
Q Consensus       115 ~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (235)
                      ++.+...|+.. .+....+|.|+     .+++++..+++++.++|||||.+++..+..+                     
T Consensus       156 ~v~~~~~d~~~-~~~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~---------------------  208 (266)
T d1o54a_         156 RVTIKVRDISE-GFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPTTN---------------------  208 (266)
T ss_dssp             GEEEECCCGGG-CCSCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESSHH---------------------
T ss_pred             CcEEEeccccc-cccccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCccc---------------------
Confidence            78888888754 34467899887     5789999999999999999999998765421                     


Q ss_pred             ceeecCHHHHHHHHHHcCCceeEEE
Q 026688          195 SYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       195 ~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                           ....+.+.+++.||..+++.
T Consensus       209 -----Qv~~~~~~l~~~gF~~i~~~  228 (266)
T d1o54a_         209 -----QVQETLKKLQELPFIRIEVW  228 (266)
T ss_dssp             -----HHHHHHHHHHHSSEEEEEEE
T ss_pred             -----HHHHHHHHHHHCCceeEEEE
Confidence                 22455677788899766654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-19  Score=137.94  Aligned_cols=149  Identities=18%  Similarity=0.176  Sum_probs=103.4

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCC-------------------------
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-------------------------  113 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-------------------------  113 (235)
                      ...+.+|||+|||+|.++...+.... .+|+|+|+|+.+++.+++++......-.                         
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            34578999999999987755444332 3899999999999999988754321000                         


Q ss_pred             --CCeeEEecccccC------CCCCCceeEEEecccccccC----ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchh
Q 026688          114 --ENFLLVRADISRL------PFASSSIDAVHAGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF  181 (235)
Q Consensus       114 --~~~~~~~~d~~~~------~~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~  181 (235)
                        ........|+...      +...++||+|++..+++|+.    +..++++++.++|||||.|++............  
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~--  208 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG--  208 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET--
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC--
Confidence              0012344555432      23346899999999999985    346889999999999999999887653211000  


Q ss_pred             HHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688          182 SRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  219 (235)
                               ........++.++++++|+++||++++..
T Consensus       209 ---------~~~~~~~~~t~e~v~~~l~~aGf~v~~~~  237 (263)
T d2g72a1         209 ---------EARLTVVPVSEEEVREALVRSGYKVRDLR  237 (263)
T ss_dssp             ---------TEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ---------CcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence                     00011235799999999999999987654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.80  E-value=1.2e-18  Score=127.77  Aligned_cols=120  Identities=18%  Similarity=0.088  Sum_probs=94.0

Q ss_pred             HHHHHHHHh--hcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           47 EKEFELMKG--YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        47 ~~~~~~i~~--~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .++...++.  .+...|+.+|||+|||+|..+.++++..+.++|+|+|+|+.+++.++++...     ..++.++..|..
T Consensus        40 sklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-----~~ni~~i~~d~~  114 (209)
T d1nt2a_          40 SKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----RNNIIPLLFDAS  114 (209)
T ss_dssp             CHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----CSSEEEECSCTT
T ss_pred             hHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-----cCCceEEEeecc
Confidence            344555543  3567789999999999999999999988778999999999999999998776     347899999987


Q ss_pred             cCCCCCCceeEEE-ecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          125 RLPFASSSIDAVH-AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       125 ~~~~~~~~~D~i~-~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ..+.....+|.+. +...+.|..+...+++++.++|||||.+++....
T Consensus       115 ~~~~~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  162 (209)
T d1nt2a_         115 KPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA  162 (209)
T ss_dssp             CGGGTTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CccccccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence            7544333333332 2334666677788999999999999999998754

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.2e-19  Score=134.11  Aligned_cols=154  Identities=9%  Similarity=0.102  Sum_probs=107.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--  125 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--  125 (235)
                      ...+.+...+. .++++|||||||+|..+..++++.+ .+++++|+|+.+++.|+++....    ..++.+...+...  
T Consensus        41 ~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~  114 (229)
T d1zx0a1          41 PYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVA  114 (229)
T ss_dssp             HHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHG
T ss_pred             HHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhc----ccccccccccccccc
Confidence            34455555554 3478999999999999999988764 58999999999999999998764    3456777777654  


Q ss_pred             CCCCCCceeEEEe-----cccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecC
Q 026688          126 LPFASSSIDAVHA-----GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS  200 (235)
Q Consensus       126 ~~~~~~~~D~i~~-----~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (235)
                      .+++.++||.|++     ...++|+.++..+++++.++|||||.+++......         ..   .............
T Consensus       115 ~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~---------~~---~~~~~~~~~~~~~  182 (229)
T d1zx0a1         115 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSW---------GE---LMKSKYSDITIMF  182 (229)
T ss_dssp             GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHH---------HH---HTTTTCSCHHHHH
T ss_pred             cccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCc---------ch---hhhhhhhhcchhh
Confidence            3466788999984     46677778888999999999999999987432211         00   0000111111122


Q ss_pred             HHHHHHHHHHcCCceeEEE
Q 026688          201 EREIEDLCRACGLVDFKCT  219 (235)
Q Consensus       201 ~~~~~~~l~~~Gf~~~~~~  219 (235)
                      .+.+...+.++||+...+.
T Consensus       183 ~~~~~~~l~~agF~~~~i~  201 (229)
T d1zx0a1         183 EETQVPALLEAGFRRENIR  201 (229)
T ss_dssp             HHHTHHHHHHTTCCGGGEE
T ss_pred             hhHHHHHHHHCCCeeEEEE
Confidence            3455677788999764443

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=3.6e-18  Score=125.72  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=98.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      .......+++.+...++.+|||+|||+|..+..+++. ++...|+++|+++.+++.|++++...+   ..++.+.++|..
T Consensus        60 ~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~---~~n~~~~~~d~~  136 (213)
T d1dl5a1          60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGY  136 (213)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGG
T ss_pred             cchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc---ccccccccCchH
Confidence            3466778888899999999999999999999999886 566799999999999999999998765   457889999998


Q ss_pred             cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +.....++||+|++..+++++++      .+.+.|+|||.|++..
T Consensus       137 ~~~~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         137 YGVPEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GCCGGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred             HccccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence            76656788999999999998753      4678899999998854

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=3.4e-17  Score=121.01  Aligned_cols=162  Identities=12%  Similarity=0.104  Sum_probs=114.7

Q ss_pred             CHHHHHHHHh---hcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           46 PEKEFELMKG---YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        46 ~~~~~~~i~~---~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      ..++...|+.   .+...|+.+|||+|||+|.++.++++. ++...|+++|+++.+++.++++...     ..++..+..
T Consensus        55 rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-----~~~~~~i~~  129 (227)
T d1g8aa_          55 RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----RRNIVPILG  129 (227)
T ss_dssp             TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----CTTEEEEEC
T ss_pred             ccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-----cCCceEEEE
Confidence            4456666654   446778999999999999999999987 6778999999999999999998765     345777777


Q ss_pred             ccccC---CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceee
Q 026688          122 DISRL---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF  198 (235)
Q Consensus       122 d~~~~---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (235)
                      |....   +.....+|+|++  .+.+..+...+++++.+.|||||.+++............+  ..              
T Consensus       130 d~~~~~~~~~~~~~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~--~~--------------  191 (227)
T d1g8aa_         130 DATKPEEYRALVPKVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP--EQ--------------  191 (227)
T ss_dssp             CTTCGGGGTTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH--HH--------------
T ss_pred             ECCCcccccccccceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCH--HH--------------
Confidence            77542   333467888775  3455566778999999999999999998765421111111  00              


Q ss_pred             cCHHHHHHHHHHcCCceeEEEeeCc----EEEEEEecC
Q 026688          199 LSEREIEDLCRACGLVDFKCTRNRG----FVMFTATKP  232 (235)
Q Consensus       199 ~~~~~~~~~l~~~Gf~~~~~~~~~~----~~~~~~~k~  232 (235)
                       ...+...+ .+.||++++.....+    ..+++++|.
T Consensus       192 -v~~~v~~l-~~~gf~iie~i~L~p~~~~H~~vv~rK~  227 (227)
T d1g8aa_         192 -VFREVERE-LSEYFEVIERLNLEPYEKDHALFVVRKT  227 (227)
T ss_dssp             -HHHHHHHH-HHTTSEEEEEEECTTTSSSEEEEEEECC
T ss_pred             -HHHHHHHH-HHcCCEEEEEEcCCCCCCceEEEEEEeC
Confidence             01233343 467999988765433    578888873

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.76  E-value=7.7e-18  Score=126.18  Aligned_cols=153  Identities=16%  Similarity=0.200  Sum_probs=112.6

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      ..+|||||||+|.++..+++++|..++++.|+ |..++.+.       .  ..++++..+|+.+. .  ..+|++++..+
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~-------~--~~rv~~~~gD~f~~-~--p~aD~~~l~~v  147 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS-------G--SNNLTYVGGDMFTS-I--PNADAVLLKYI  147 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-------C--BTTEEEEECCTTTC-C--CCCSEEEEESC
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc-------c--cCceEEEecCcccC-C--CCCcEEEEEee
Confidence            47899999999999999999999999999998 54544321       1  46899999999763 2  35799999999


Q ss_pred             ccccCChH--HHHHHHHHhccCC---cEEEEEEeccCCCcccchh--HHHHHHhHhhcCCceeecCHHHHHHHHHHcCCc
Q 026688          142 IHCWSSPS--TGVAEISRVLRPG---GVFVGTTYIVDGPFNLIPF--SRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  214 (235)
Q Consensus       142 l~~~~~~~--~~l~~~~~~L~pg---G~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  214 (235)
                      +|++++.+  ++|+++++.|+||   |.+++.+...+........  ...+...... ....+.+|.++|+++++++||+
T Consensus       148 LHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~-~~~G~ert~~e~~~ll~~AGf~  226 (244)
T d1fp2a2         148 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMA-CLNGKERNEEEWKKLFIEAGFQ  226 (244)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGG-GGTCCCEEHHHHHHHHHHTTCC
T ss_pred             cccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHH-hCCCcCCCHHHHHHHHHHcCCc
Confidence            99999874  8899999999998   7888888766432222111  1111111111 1234567999999999999999


Q ss_pred             eeEEEeeCc-EEEEE
Q 026688          215 DFKCTRNRG-FVMFT  228 (235)
Q Consensus       215 ~~~~~~~~~-~~~~~  228 (235)
                      ++++...+. ..++.
T Consensus       227 ~~~i~~~~~~~svIE  241 (244)
T d1fp2a2         227 HYKISPLTGFLSLIE  241 (244)
T ss_dssp             EEEEEEEETTEEEEE
T ss_pred             eEEEEECCCCeEEEE
Confidence            999875443 44433

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.4e-18  Score=134.42  Aligned_cols=123  Identities=22%  Similarity=0.322  Sum_probs=92.2

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCC-CCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~  125 (235)
                      ....+.+.+.+...+..+|||+|||+|..+..+++++.  +|+|+|+|+.|++.|+++........ .....+...++..
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            44456666666666678999999999999999999875  89999999999999998876543210 0123444555533


Q ss_pred             CC---CCCCceeEEEec-ccccccCCh-------HHHHHHHHHhccCCcEEEEEEec
Q 026688          126 LP---FASSSIDAVHAG-AAIHCWSSP-------STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       126 ~~---~~~~~~D~i~~~-~~l~~~~~~-------~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .+   ...+.||+|+|. .+++|++++       ..+++++.++|||||.+++...+
T Consensus       120 ~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             HHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            21   234789999976 588888753       36899999999999999997664

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=1.1e-17  Score=121.87  Aligned_cols=105  Identities=17%  Similarity=0.163  Sum_probs=91.8

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEec
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~  139 (235)
                      ...|||||||+|..+..+++..|+..++|+|+++.++..|.+++...+   ..|+.+.++|+..+.  ++.+++|.|++.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~---l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh---ccCchhcccchhhhhcccCchhhhccccc
Confidence            347999999999999999999999999999999999999999998876   468999999998754  678899999988


Q ss_pred             ccccccCCh--------HHHHHHHHHhccCCcEEEEEE
Q 026688          140 AAIHCWSSP--------STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       140 ~~l~~~~~~--------~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +...+....        ..+++.+.++|||||.|.+.+
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            777665443        378999999999999999875

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.2e-17  Score=126.48  Aligned_cols=133  Identities=18%  Similarity=0.181  Sum_probs=105.3

Q ss_pred             eecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcC---
Q 026688           34 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES---  109 (235)
Q Consensus        34 w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~---  109 (235)
                      |...+.+.....+......|+..+...|+.+|||+|||+|.++..+++. ++.++|+++|+++++++.|++++...+   
T Consensus        71 ~~~~~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~  150 (324)
T d2b25a1          71 YVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSW  150 (324)
T ss_dssp             HHHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCCcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhh
Confidence            3444455555567888999999999999999999999999999999986 678899999999999999999886431   


Q ss_pred             -----CCCCCCeeEEecccccCC--CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          110 -----NFPKENFLLVRADISRLP--FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       110 -----~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                           .....++.+...|+....  ++...||.|++     ++++|..++.++.++|||||.|++-.++
T Consensus       151 ~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~  214 (324)
T d2b25a1         151 KLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVN  214 (324)
T ss_dssp             TTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             hhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCC
Confidence                 011357899999987643  34578999985     5788888999999999999999986654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.7e-16  Score=120.08  Aligned_cols=155  Identities=13%  Similarity=0.095  Sum_probs=116.9

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      |..+.+.+..+..... .+.+|||+|||+|..+..++...|.++|+++|+|+.+++.|++++...+   ..++++...|+
T Consensus        92 peTE~lv~~~l~~~~~-~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~---~~~v~~~~~d~  167 (274)
T d2b3ta1          92 PDTECLVEQALARLPE-QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA---IKNIHILQSDW  167 (274)
T ss_dssp             TTHHHHHHHHHHHSCS-SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCST
T ss_pred             cchhhhhhhHhhhhcc-cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC---cccceeeeccc
Confidence            4555667777666554 3578999999999999999999999999999999999999999998876   34799999998


Q ss_pred             ccCCCCCCceeEEEecccc-------------cccCC------------hHHHHHHHHHhccCCcEEEEEEeccCCCccc
Q 026688          124 SRLPFASSSIDAVHAGAAI-------------HCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNL  178 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l-------------~~~~~------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~  178 (235)
                      .+ +++..+||+|+++-..             .|-+.            ..+++..+.+.|+|||.+++....       
T Consensus       168 ~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~-------  239 (274)
T d2b3ta1         168 FS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-------  239 (274)
T ss_dssp             TG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-------
T ss_pred             cc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc-------
Confidence            76 3456799999997332             11111            135788999999999999985422       


Q ss_pred             chhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE--eeCcEEEEEEe
Q 026688          179 IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTAT  230 (235)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~~~~~~~  230 (235)
                                          -..+.+.++++++||..+++.  ..+..-+++++
T Consensus       240 --------------------~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r  273 (274)
T d2b3ta1         240 --------------------QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR  273 (274)
T ss_dssp             --------------------SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred             --------------------hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence                                134678899999999866554  23444455553

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.71  E-value=5.7e-17  Score=121.62  Aligned_cols=159  Identities=15%  Similarity=0.118  Sum_probs=112.4

Q ss_pred             HHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           51 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        51 ~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      ..++..... ....+|||||||+|.++..+++++|+.++++.|+.+ .++.+.       .  ..++.+...|+.+ +.|
T Consensus        70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~-------~--~~r~~~~~~d~~~-~~P  138 (243)
T d1kyza2          70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP-------S--YPGVEHVGGDMFV-SIP  138 (243)
T ss_dssp             HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC-------C--CTTEEEEECCTTT-CCC
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc-------c--CCceEEecccccc-cCC
Confidence            344444433 335789999999999999999999999999999854 332221       1  4689999999965 333


Q ss_pred             CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccc--hhHHHHHHh-HhhcCCceeecCHHHH
Q 026688          130 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLI--PFSRLLRQN-MMQISGSYTFLSEREI  204 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~  204 (235)
                        ..|++++..++|++++.  ..+|+++++.|+|||.+++.+..........  +........ +.........++.++|
T Consensus       139 --~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~  216 (243)
T d1kyza2         139 --KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEF  216 (243)
T ss_dssp             --CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHH
T ss_pred             --CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHH
Confidence              35778889999999876  4899999999999999999887654322111  111111111 1112223455789999


Q ss_pred             HHHHHHcCCceeEEEeeC
Q 026688          205 EDLCRACGLVDFKCTRNR  222 (235)
Q Consensus       205 ~~~l~~~Gf~~~~~~~~~  222 (235)
                      +++++++||+.+++....
T Consensus       217 ~~ll~~AGf~~vkv~~~~  234 (243)
T d1kyza2         217 EDLAKGAGFQGFKVHCNA  234 (243)
T ss_dssp             HHHHHHHCCSCEEEEEEE
T ss_pred             HHHHHHcCCCcEEEEEeC
Confidence            999999999999987543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-16  Score=117.89  Aligned_cols=118  Identities=21%  Similarity=0.286  Sum_probs=95.3

Q ss_pred             HHHHHHHHhhc--CCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCC--CCCCeeEEec
Q 026688           47 EKEFELMKGYL--KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF--PKENFLLVRA  121 (235)
Q Consensus        47 ~~~~~~i~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~  121 (235)
                      ......+++.+  ...++.+|||+|||+|..+..+++. ++..+|+++|+++++++.|++++...+..  ...++.+..+
T Consensus        60 P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g  139 (224)
T d1i1na_          60 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG  139 (224)
T ss_dssp             HHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred             hHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe
Confidence            44556777776  5567899999999999999988875 56779999999999999999988754321  0246889999


Q ss_pred             ccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       122 d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      |......+...||+|++..++++++      ..+.+.|||||.|++...
T Consensus       140 D~~~~~~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         140 DGRMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             CGGGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred             ecccccchhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEEEEEc
Confidence            9987766678999999999998765      357889999999998654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.70  E-value=2.9e-16  Score=114.22  Aligned_cols=105  Identities=20%  Similarity=0.168  Sum_probs=88.8

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEec
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~  139 (235)
                      ...|||||||+|.++..+++..|+..++|+|+++.++..|.+++...+   ..++.+..+|+..+.  ++..++|.|++.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~---l~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc---cccceeeecCHHHHhhhccCCceehhccc
Confidence            348999999999999999999999999999999999999999888766   468999999997753  567899999866


Q ss_pred             ccccccCCh--------HHHHHHHHHhccCCcEEEEEE
Q 026688          140 AAIHCWSSP--------STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       140 ~~l~~~~~~--------~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +...+....        ..+++.+.++|+|||.|++.+
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            554433322        478999999999999998866

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.69  E-value=2.1e-16  Score=116.33  Aligned_cols=111  Identities=17%  Similarity=0.153  Sum_probs=93.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .......+++.+...++.+|||||||+|+++..+++...  +|+++|+++.+++.|++++..     ..++.+..+|...
T Consensus        55 ~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~-----~~nv~~~~~d~~~  127 (224)
T d1vbfa_          55 ALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSY-----YNNIKLILGDGTL  127 (224)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTT-----CSSEEEEESCGGG
T ss_pred             hhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhc-----ccccccccCchhh
Confidence            345556788888888999999999999999999998865  999999999999999988765     4589999999876


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .....++||.|++..++.+++      ..+.+.|+|||+|++..
T Consensus       128 g~~~~~pfD~Iiv~~a~~~ip------~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         128 GYEEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             CCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred             cchhhhhHHHHHhhcchhhhh------HHHHHhcCCCCEEEEEE
Confidence            444457899999998888765      34678899999999853

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.4e-17  Score=126.55  Aligned_cols=123  Identities=11%  Similarity=0.053  Sum_probs=98.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCCCCCeeE
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFPKENFLL  118 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~~~~~~  118 (235)
                      .......+++.+...++.+|||+|||+|..+..+++..+..+++|+|+++.+++.|++.....       +.. ..++++
T Consensus       136 ~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~-~~~i~~  214 (328)
T d1nw3a_         136 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-HAEYTL  214 (328)
T ss_dssp             CHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEE
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc-CCceEE
Confidence            455677888888888899999999999999999998876678999999999999998765431       111 457999


Q ss_pred             EecccccCCCCCCc--eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          119 VRADISRLPFASSS--IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       119 ~~~d~~~~~~~~~~--~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +++|+.+.++.+..  .|+|+++ .+.|.++....+.++.+.|||||.++....
T Consensus       215 ~~gd~~~~~~~~~~~~advi~~~-~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         215 ERGDFLSEEWRERIANTSVIFVN-NFAFGPEVDHQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             EECCTTSHHHHHHHHHCSEEEEC-CTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             EECcccccccccccCcceEEEEc-ceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence            99999887755443  4666664 455667778899999999999999987654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1e-15  Score=119.90  Aligned_cols=103  Identities=20%  Similarity=0.319  Sum_probs=86.7

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      .++++|||||||+|.++..+++++. .+|+++|.++ ++..|++....++.  ..++.++.+|+.+++++.++||+|++.
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~~~--~~~i~~i~~~~~~l~~~~~~~D~i~se  112 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELNGF--SDKITLLRGKLEDVHLPFPKVDIIISE  112 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHhCc--cccceEEEeehhhccCcccceeEEEEE
Confidence            3478999999999999999998874 4899999986 67888888877765  568999999999998888999999986


Q ss_pred             cccccc---CChHHHHHHHHHhccCCcEEE
Q 026688          140 AAIHCW---SSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       140 ~~l~~~---~~~~~~l~~~~~~L~pgG~li  166 (235)
                      ...+++   .....++....++|||||.++
T Consensus       113 ~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         113 WMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            665544   345678889999999999886

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.9e-15  Score=115.17  Aligned_cols=113  Identities=16%  Similarity=0.272  Sum_probs=88.5

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      +.|.+.....++++|||||||+|.++..+++.++ .+|+++|.++.+.. +++.....+.  ..++.+..+|+.+++.+.
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~~~--~~~i~~~~~~~~~l~~~~  100 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLNKL--EDTITLIKGKIEEVHLPV  100 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHTTC--TTTEEEEESCTTTSCCSC
T ss_pred             HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHhCC--CccceEEEeeHHHhcCcc
Confidence            3444444445588999999999999999999875 48999999998764 5555555544  568999999999988878


Q ss_pred             CceeEEEecccccccCCh---HHHHHHHHHhccCCcEEEE
Q 026688          131 SSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~  167 (235)
                      .+||+|++....++....   ..++....+.|+|||.++-
T Consensus       101 ~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         101 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             ccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            899999997666655432   4677778899999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.61  E-value=7.5e-15  Score=107.22  Aligned_cols=115  Identities=14%  Similarity=0.121  Sum_probs=97.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .......+++.+...++.+|||||||+|+.+..+++.. ...|+++|.++.+++.+++++...+   ..++.+.++|...
T Consensus        63 ~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g---~~nv~~~~gd~~~  138 (215)
T d1jg1a_          63 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDGSK  138 (215)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGG
T ss_pred             hhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcC---CceeEEEECcccc
Confidence            45667888999999999999999999999999888763 2479999999999999999998876   4689999999987


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .......||.|++...+.++++      .+.+.|+|||++++...
T Consensus       139 g~~~~~pfD~Iiv~~a~~~ip~------~l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         139 GFPPKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             CCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEEC
T ss_pred             CCcccCcceeEEeecccccCCH------HHHHhcCCCCEEEEEEc
Confidence            6555788999999998887653      36778999999998543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.5e-15  Score=117.05  Aligned_cols=103  Identities=15%  Similarity=0.255  Sum_probs=85.0

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++++|||||||+|.++..+++.++ .+|+++|.++. ...+++....++.  ..++.+.++|+.+++.+.+++|+|++..
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~-~~~a~~~~~~n~~--~~~v~~~~~~~~~~~~~~~~~D~ivs~~  108 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSI-SDYAVKIVKANKL--DHVVTIIKGKVEEVELPVEKVDIIISEW  108 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTT-HHHHHHHHHHTTC--TTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHH-HhhhhhHHHHhCC--ccccceEeccHHHcccccceeEEEeeee
Confidence            478999999999999999999875 37999999975 4666666666654  5579999999999888888999999876


Q ss_pred             cccccC---ChHHHHHHHHHhccCCcEEEE
Q 026688          141 AIHCWS---SPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       141 ~l~~~~---~~~~~l~~~~~~L~pgG~li~  167 (235)
                      ..+++.   ....++..+.++|+|||.++-
T Consensus       109 ~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         109 MGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             CBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            655543   456889999999999999873

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=2.7e-14  Score=107.52  Aligned_cols=138  Identities=14%  Similarity=0.128  Sum_probs=105.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  128 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (235)
                      ....+.+.+.+  +.+|||+|||+|.++..+++++ .++|+++|+++.+++.+++++..+++  ..+++++++|+.+.+ 
T Consensus        97 er~ri~~~~~~--g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l--~~~v~~~~~D~~~~~-  170 (260)
T d2frna1          97 ERVRMAKVAKP--DELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFP-  170 (260)
T ss_dssp             HHHHHHHHCCT--TCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCC-
T ss_pred             HHHHHHhhcCC--ccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCC--CceEEEEEcchHHhc-
Confidence            44556666654  8999999999999999999886 36999999999999999999998876  457999999998865 


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  208 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (235)
                      +.+.||.|++...    +....++..+.++|+|||++.+........                    ......+.+.++.
T Consensus       171 ~~~~~D~Ii~~~p----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~--------------------~~~~~~e~~~~~~  226 (260)
T d2frna1         171 GENIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL--------------------MPREPFETFKRIT  226 (260)
T ss_dssp             CCSCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG--------------------TTTTTHHHHHHHH
T ss_pred             cCCCCCEEEECCC----CchHHHHHHHHhhcCCCCEEEEEecccccc--------------------chhhHHHHHHHHH
Confidence            3578999997432    234577899999999999998765543210                    0012345677888


Q ss_pred             HHcCCcee
Q 026688          209 RACGLVDF  216 (235)
Q Consensus       209 ~~~Gf~~~  216 (235)
                      ...|+.+.
T Consensus       227 ~~~g~~v~  234 (260)
T d2frna1         227 KEYGYDVE  234 (260)
T ss_dssp             HHTTCEEE
T ss_pred             HHcCCceE
Confidence            88999753

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=4.2e-15  Score=106.78  Aligned_cols=121  Identities=16%  Similarity=0.214  Sum_probs=99.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ..+++.+.+++.+.++..+||++||+|..+..++++.|.++|+|+|.++.+++.|++++...    ..++.++..++.++
T Consensus         9 pVll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~----~~r~~~~~~~f~~~   84 (192)
T d1m6ya2           9 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREA   84 (192)
T ss_dssp             CTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGH
T ss_pred             chHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc----cccccchhHHHhhH
Confidence            34567788888888899999999999999999999988899999999999999999998775    34799999998764


Q ss_pred             C-----CCCCceeEEEecccc--cccCC-------hHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 P-----FASSSIDAVHAGAAI--HCWSS-------PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 ~-----~~~~~~D~i~~~~~l--~~~~~-------~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .     +..+++|.|+....+  +++++       ....|..+.++|+|||.+++.++.
T Consensus        85 ~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2          85 DFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             HHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred             HHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence            2     445789999987554  22222       247789999999999999987754

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=6.4e-14  Score=109.05  Aligned_cols=126  Identities=13%  Similarity=0.144  Sum_probs=95.6

Q ss_pred             CCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           42 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        42 ~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      .+.........+.+.+.+  +.+|||++||+|.++..++..+. .+|+++|+|+.+++.+++++..++.  ..++++.++
T Consensus       128 ~flDqr~~r~~~~~~~~~--g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl--~~~~~~~~~  202 (324)
T d2as0a2         128 FFLDQRENRLALEKWVQP--GDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGV--EDRMKFIVG  202 (324)
T ss_dssp             CCSTTHHHHHHHGGGCCT--TCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEES
T ss_pred             cccchhhHHHHHHhhcCC--CCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCC--Cccceeeec
Confidence            334444455556555544  78999999999999999998874 4899999999999999999998875  457899999


Q ss_pred             ccccC----CCCCCceeEEEecccccccC---------ChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          122 DISRL----PFASSSIDAVHAGAAIHCWS---------SPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       122 d~~~~----~~~~~~~D~i~~~~~l~~~~---------~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      |+.+.    +....+||+|++.-....-.         +...++..+.++|+|||.|++.+...
T Consensus       203 d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         203 SAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             hhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            98652    22457899999864322111         11357888999999999999987654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=6.1e-14  Score=103.13  Aligned_cols=118  Identities=19%  Similarity=0.277  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhc--CCCCCCeEEEecCCCchHHHHHHHcC------CCceEEEEeCCHHHHHHHHHHhhhcCC--CCCCCe
Q 026688           47 EKEFELMKGYL--KPVLGGNIIDASCGSGLFSRIFAKSG------LFSLVVALDYSENMLKQCYEFVQQESN--FPKENF  116 (235)
Q Consensus        47 ~~~~~~i~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~  116 (235)
                      ......+++.+  ...++.+|||||||+|+.+..+++..      +..+|+++|+++++++.|++++.....  ....++
T Consensus        64 P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv  143 (223)
T d1r18a_          64 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL  143 (223)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred             hhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEE
Confidence            34556777766  56678999999999999998887752      234899999999999999987643210  002478


Q ss_pred             eEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       117 ~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+..+|..+...+...||.|++...+.++++      .+.+.|+|||.+++...
T Consensus       144 ~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         144 LIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPVG  191 (223)
T ss_dssp             EEEESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred             EEEecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEEe
Confidence            9999999876555678999999999887653      47889999999988543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=5.2e-14  Score=111.65  Aligned_cols=123  Identities=9%  Similarity=-0.027  Sum_probs=91.1

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-------CCCCCCeeE
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------NFPKENFLL  118 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-------~~~~~~~~~  118 (235)
                      ....+..+++.+...++.++||+|||.|..+..+++..+..+++|+|+++.+++.|+++.....       .. ...+.+
T Consensus       201 ~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~-~~~~~~  279 (406)
T d1u2za_         201 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEF  279 (406)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEE
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccc-ccccee
Confidence            3456788888899888999999999999999999988665689999999999999998775421       10 112333


Q ss_pred             -EecccccCC---CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          119 -VRADISRLP---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       119 -~~~d~~~~~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       ..+++...+   ..-..+|+|+++. +.|.++....++++.+.|||||.|+....
T Consensus       280 ~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         280 SLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             EESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             eeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence             334443322   1123578888764 44567778899999999999999987653

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=1.1e-13  Score=107.36  Aligned_cols=119  Identities=18%  Similarity=0.153  Sum_probs=90.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .++..+.+.+.   ..+++|||++||+|.++..+++.+  .+|+++|+|+.+++.+++++..++.   .++++++.|..+
T Consensus       133 Dqr~~r~~~~~---~~g~rVLDl~~gtG~~s~~~a~g~--~~V~~vD~s~~al~~a~~n~~~ngl---~~~~~i~~d~~~  204 (318)
T d1wxxa2         133 DQRENRLYMER---FRGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFD  204 (318)
T ss_dssp             GGHHHHHHGGG---CCEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHH
T ss_pred             hhhhhHHHHHH---hCCCeeeccCCCCcHHHHHHHhcC--CcEEeecchHHHHHHHHHHHHHcCC---CCcceeeccHHH
Confidence            34444444433   347899999999999999988654  4999999999999999999988763   478999999865


Q ss_pred             C----CCCCCceeEEEecccccccC---------ChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          126 L----PFASSSIDAVHAGAAIHCWS---------SPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       126 ~----~~~~~~~D~i~~~~~l~~~~---------~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .    +...++||+|++.-......         +...++..+.++|+|||.|++.+.+.
T Consensus       205 ~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         205 LLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             HhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            3    23457899999864322111         11367889999999999999877654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=2.3e-13  Score=102.48  Aligned_cols=157  Identities=14%  Similarity=0.121  Sum_probs=108.2

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  123 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  123 (235)
                      |..+.+.+.+.+.....+..+++|+|||+|..+..+++ .++++|+++|+|+.+++.|++++..++.  ..++.+...|+
T Consensus        93 peTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~--~~~~~i~~~~~  169 (271)
T d1nv8a_          93 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEF  169 (271)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESST
T ss_pred             hhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCC--CceeEEeeccc
Confidence            55566677777766555567999999999999998875 4688999999999999999999988765  45678888888


Q ss_pred             ccC-CCCCCceeEEEecccc----cccC-----Ch----------HHHH-HHHHHhccCCcEEEEEEeccCCCcccchhH
Q 026688          124 SRL-PFASSSIDAVHAGAAI----HCWS-----SP----------STGV-AEISRVLRPGGVFVGTTYIVDGPFNLIPFS  182 (235)
Q Consensus       124 ~~~-~~~~~~~D~i~~~~~l----~~~~-----~~----------~~~l-~~~~~~L~pgG~li~~~~~~~~~~~~~~~~  182 (235)
                      .+. +...++||+|+++--.    ...+     +|          ..++ +-+.+.|+|||.+++.....          
T Consensus       170 ~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~----------  239 (271)
T d1nv8a_         170 LEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED----------  239 (271)
T ss_dssp             TGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT----------
T ss_pred             ccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH----------
Confidence            663 2233689999997321    0010     11          1222 23567899999888765321          


Q ss_pred             HHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEEEEecCC
Q 026688          183 RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS  233 (235)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~k~~  233 (235)
                                       ..+.+.+++.+.||.   ....+..-+++++|++
T Consensus       240 -----------------Q~~~v~~l~~~~g~~---kDl~g~~R~~~~~k~~  270 (271)
T d1nv8a_         240 -----------------QVEELKKIVSDTVFL---KDSAGKYRFLLLNRRS  270 (271)
T ss_dssp             -----------------CHHHHTTTSTTCEEE---ECTTSSEEEEEEECCC
T ss_pred             -----------------HHHHHHHHHHhCCEE---eccCCCcEEEEEEEcC
Confidence                             234555666677762   2344556667777664

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.43  E-value=3.6e-13  Score=93.37  Aligned_cols=107  Identities=16%  Similarity=0.197  Sum_probs=82.4

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEEEec
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~  139 (235)
                      .+.+|||+|||+|.++..++.++. .+|+++|.++.+++.+++++...+.  ..++++++.|+.+. ....++||+|++.
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~--~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKA--ENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTC--GGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhccc--ccchhhhcccccccccccccccceeEec
Confidence            478999999999999998888876 4999999999999999999987764  45799999998763 3446789999975


Q ss_pred             ccccccCChHHHHHHHH--HhccCCcEEEEEEec
Q 026688          140 AAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYI  171 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~--~~L~pgG~li~~~~~  171 (235)
                      -... .......+..+.  +.|+|+|.+++....
T Consensus        91 PPy~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          91 PPYA-KETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             CSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhhc-cchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            3322 111134555554  469999999886544

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.42  E-value=1.1e-12  Score=101.38  Aligned_cols=118  Identities=12%  Similarity=0.062  Sum_probs=89.3

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----
Q 026688           51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----  126 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----  126 (235)
                      ..+...+..  +++|||+.||+|.++..++..+. .+|+++|+|+..++.+++++..+++. ..++++++.|+.+.    
T Consensus       136 ~~l~~~~~~--g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l~-~~~~~~i~~d~~~~l~~~  211 (317)
T d2b78a2         136 NELINGSAA--GKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLD-MANHQLVVMDVFDYFKYA  211 (317)
T ss_dssp             HHHHHTTTB--TCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCC-CTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHhhC--CCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhccc-CcceEEEEccHHHHHHHH
Confidence            445554444  78999999999999998887654 47999999999999999999887652 35789999999653    


Q ss_pred             CCCCCceeEEEeccccc-----cc----CChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          127 PFASSSIDAVHAGAAIH-----CW----SSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~-----~~----~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .-....||+|++.---.     ..    .+..++++.+.++|+|||.|++.+...
T Consensus       212 ~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         212 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             HhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            12346899999853211     01    112368888999999999999987654

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.8e-12  Score=94.13  Aligned_cols=81  Identities=11%  Similarity=0.031  Sum_probs=66.3

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC------CCCCCceeE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFASSSIDA  135 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~D~  135 (235)
                      ..++||+|||+|..+..++.+.+..+++|+|+++.+++.|++++..+++  ..++.+...+....      ....++||+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l--~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL--SDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC--CcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            4699999999999999999988888999999999999999999998876  55777776655432      123468999


Q ss_pred             EEecccccc
Q 026688          136 VHAGAAIHC  144 (235)
Q Consensus       136 i~~~~~l~~  144 (235)
                      |+|+--++.
T Consensus       140 ivsNPPY~~  148 (250)
T d2h00a1         140 CMCNPPFFA  148 (250)
T ss_dssp             EEECCCCC-
T ss_pred             EEecCcccc
Confidence            999877664

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.40  E-value=5.6e-13  Score=94.14  Aligned_cols=121  Identities=16%  Similarity=0.210  Sum_probs=81.5

Q ss_pred             CCCHHHHHHHHhhcCC--CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           44 PGPEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      |.+....+.+.+++..  ..+.+|||+|||+|.++..++.++.  +++++|.|+.+++.+++++...+.  ..++.....
T Consensus        22 pt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~~~~~--~~~v~~~~~   97 (171)
T d1ws6a1          22 PSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPV   97 (171)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCH
T ss_pred             CCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHHhhcc--ccceeeeeh
Confidence            3345555555554432  3478999999999999999988876  899999999999999999988754  233433333


Q ss_pred             ccc--cCCCCCCceeEEEecccccccCChHHHHHHH--HHhccCCcEEEEEEe
Q 026688          122 DIS--RLPFASSSIDAVHAGAAIHCWSSPSTGVAEI--SRVLRPGGVFVGTTY  170 (235)
Q Consensus       122 d~~--~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~--~~~L~pgG~li~~~~  170 (235)
                      |..  .......+||+|++.--+. .. ..+.+..+  ...|+|||.+++...
T Consensus        98 d~~~~~~~~~~~~fD~If~DPPY~-~~-~~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1          98 EVFLPEAKAQGERFTVAFMAPPYA-MD-LAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCTT-SC-TTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             hcccccccccCCccceeEEccccc-cC-HHHHHHHHHHcCCcCCCeEEEEEec
Confidence            321  1123457899999864433 22 22334433  357999998887654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.38  E-value=2.5e-11  Score=87.71  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=71.9

Q ss_pred             CCCCHHHHHHHH---hhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEE
Q 026688           43 FPGPEKEFELMK---GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  119 (235)
Q Consensus        43 ~~~~~~~~~~i~---~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~  119 (235)
                      |+.+......+.   .......+.+|||+|||+|.++..++.+++ .+|+|+|+|+.+++.+++++...+    .+.++.
T Consensus        25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~----~~~~~~   99 (201)
T d1wy7a1          25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFK----GKFKVF   99 (201)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGT----TSEEEE
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcC----CCceEE
Confidence            444555555443   334444578999999999999998888764 489999999999999999987653    468889


Q ss_pred             ecccccCCCCCCceeEEEeccccc
Q 026688          120 RADISRLPFASSSIDAVHAGAAIH  143 (235)
Q Consensus       120 ~~d~~~~~~~~~~~D~i~~~~~l~  143 (235)
                      ..|..+.   .++||+|+++-.+.
T Consensus       100 ~~d~~~~---~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1         100 IGDVSEF---NSRVDIVIMNPPFG  120 (201)
T ss_dssp             ESCGGGC---CCCCSEEEECCCCS
T ss_pred             ECchhhh---CCcCcEEEEcCccc
Confidence            9998765   36799999986654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.7e-11  Score=87.38  Aligned_cols=155  Identities=10%  Similarity=0.104  Sum_probs=110.1

Q ss_pred             CCCHHHHHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           44 PGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      |......+.+...+.. ..+.+|||++||+|.++...+.++. ..|+.+|.++.+++.+++++...+   ..+..++..|
T Consensus        25 Pt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~---~~~~~ii~~d  100 (183)
T d2fpoa1          25 PTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSN  100 (183)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSC
T ss_pred             cCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhcc---ccceeeeeec
Confidence            4455666666665542 3478999999999999999998886 489999999999999999987754   4578889999


Q ss_pred             cccC-CCCCCceeEEEecccccccCChHHHHHHHHH--hccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeec
Q 026688          123 ISRL-PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL  199 (235)
Q Consensus       123 ~~~~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (235)
                      +... .....+||+|++.--.. .......+..+.+  .|+|+|.+++........    +                   
T Consensus       101 ~~~~l~~~~~~fDlIf~DPPY~-~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~~~~----~-------------------  156 (183)
T d2fpoa1         101 AMSFLAQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVESEVENGL----P-------------------  156 (183)
T ss_dssp             HHHHHSSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGCS----C-------------------
T ss_pred             ccccccccccccCEEEEcCccc-cchHHHHHHHHHHCCCCCCCeEEEEEecCcCCc----c-------------------
Confidence            8753 33457899999865433 2233566666665  599999998865432110    0                   


Q ss_pred             CHHHHHHHHHHcCCceeEEEeeCcEEEEEEecCCC
Q 026688          200 SEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQ  234 (235)
Q Consensus       200 ~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~k~~~  234 (235)
                      .        ...||+.++....|...+...+|.+|
T Consensus       157 ~--------~~~~~~i~k~k~yG~t~i~~~~k~~~  183 (183)
T d2fpoa1         157 T--------VPANWSLHREKVAGQVAYRLYQREAQ  183 (183)
T ss_dssp             C--------CCTTEEEEEEEEETTEEEEEEEECCC
T ss_pred             c--------CCCCcEEEEEEEeCcEEEEEEEEcCC
Confidence            0        02478888888888777777776553

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.36  E-value=3.3e-12  Score=97.57  Aligned_cols=126  Identities=14%  Similarity=0.078  Sum_probs=90.3

Q ss_pred             CCCCHHHHHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688           43 FPGPEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  121 (235)
Q Consensus        43 ~~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (235)
                      |+......+.+.+.+. ...+.+|||+.||+|.++..++..+.  +|+++|.|+.+++.|++++..++.. ..++++++.
T Consensus       113 f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln~~~-~~~~~~i~~  189 (309)
T d2igta1         113 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLE-QAPIRWICE  189 (309)
T ss_dssp             CGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCT-TSCEEEECS
T ss_pred             ccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhhccc-CCcEEEEeC
Confidence            3444445555555443 23478999999999999999998875  8999999999999999999887642 246899999


Q ss_pred             ccccC----CCCCCceeEEEeccccc-c--------c-CChHHHHHHHHHhccCCcEEEEEEec
Q 026688          122 DISRL----PFASSSIDAVHAGAAIH-C--------W-SSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       122 d~~~~----~~~~~~~D~i~~~~~l~-~--------~-~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      |+.+.    ......||+|++.---. .        + .+...++..+.++|+|||.+++.+..
T Consensus       190 D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         190 DAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             CHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             CHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence            99763    12347899999852211 0        0 11135667888999999977666543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.36  E-value=5e-12  Score=90.62  Aligned_cols=87  Identities=17%  Similarity=0.184  Sum_probs=66.9

Q ss_pred             CCCHHHHHHHH---hhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688           44 PGPEKEFELMK---GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  120 (235)
Q Consensus        44 ~~~~~~~~~i~---~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (235)
                      +.+..+...+.   .....-.+++|||+|||+|.++..++..++ .+|+++|+++.+++.|+++.        .++++.+
T Consensus        28 ~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~--------~~~~~~~   98 (197)
T d1ne2a_          28 PTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNC--------GGVNFMV   98 (197)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHC--------TTSEEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHcc--------ccccEEE
Confidence            33445444442   223444588999999999999988888774 47999999999999999873        4688999


Q ss_pred             cccccCCCCCCceeEEEecccc
Q 026688          121 ADISRLPFASSSIDAVHAGAAI  142 (235)
Q Consensus       121 ~d~~~~~~~~~~~D~i~~~~~l  142 (235)
                      .|+.+++   ++||+|+++-.+
T Consensus        99 ~D~~~l~---~~fD~Vi~NPPf  117 (197)
T d1ne2a_          99 ADVSEIS---GKYDTWIMNPPF  117 (197)
T ss_dssp             CCGGGCC---CCEEEEEECCCC
T ss_pred             EehhhcC---CcceEEEeCccc
Confidence            9998754   689999997554

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=1.9e-12  Score=94.52  Aligned_cols=116  Identities=12%  Similarity=0.190  Sum_probs=85.9

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C--
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--  127 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--  127 (235)
                      .+..++....+++|||+|||+|..+..+++..+ .++++++|+++..++.|++++...+.  ..++++..+|..+. +  
T Consensus        47 lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl--~~~i~l~~Gd~~e~l~~l  124 (214)
T d2cl5a1          47 IMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL--QDKVTILNGASQDLIPQL  124 (214)
T ss_dssp             HHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHGGGH
T ss_pred             HHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC--Cccceeeeccccccccch
Confidence            333444444468999999999999999998753 57999999999999999999988765  45799999998763 2  


Q ss_pred             ---CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                         .....||+|++.+.-... .....+.+..++|+|||.|++-+.
T Consensus       125 ~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~Ddv  169 (214)
T d2cl5a1         125 KKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLADNV  169 (214)
T ss_dssp             HHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEESCC
T ss_pred             hhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEEeCc
Confidence               234679999975322211 112346677889999998876543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.9e-12  Score=91.08  Aligned_cols=120  Identities=13%  Similarity=0.079  Sum_probs=92.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  126 (235)
                      ..-+.+..++....+++|||+|||+|..+..+++..+ +++++.+|.++...+.|++.+...+.  ..++++..+|+.+.
T Consensus        46 ~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~--~~~i~~~~Gda~e~  123 (219)
T d2avda1          46 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALET  123 (219)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc--cceEEEEEeehhhc
Confidence            3344444444444578999999999999999998754 68999999999999999999988776  56899999998652


Q ss_pred             -C-----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          127 -P-----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       127 -~-----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                       +     ...++||+|+...-=   .+....+..+.++|+|||.+++.....
T Consensus       124 l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l~  172 (219)
T d2avda1         124 LDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVLW  172 (219)
T ss_dssp             HHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             chhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence             1     234689999974322   233567889999999999999866543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.29  E-value=2.5e-11  Score=87.26  Aligned_cols=109  Identities=11%  Similarity=0.087  Sum_probs=74.9

Q ss_pred             CCCCeEEEecCCCchHHH----HHHHc----CCCceEEEEeCCHHHHHHHHHHh------------------hhcCCCC-
Q 026688           60 VLGGNIIDASCGSGLFSR----IFAKS----GLFSLVVALDYSENMLKQCYEFV------------------QQESNFP-  112 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~----~l~~~----~~~~~v~~~D~s~~~~~~a~~~~------------------~~~~~~~-  112 (235)
                      .++.+|+++|||+|.-..    .+.+.    ....+++|+|+|+..++.|++..                  ....... 
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            346799999999997433    33332    23457999999999999998422                  1110000 


Q ss_pred             ---------CCCeeEEecccccC-CCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEE
Q 026688          113 ---------KENFLLVRADISRL-PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       113 ---------~~~~~~~~~d~~~~-~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~  168 (235)
                               ...+.+...+.... +.+.+.||+|+|..++.+++.+  .++++.+.+.|+|||+|++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                     01133444444432 2345789999999999999876  58999999999999998863

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=3.5e-11  Score=92.46  Aligned_cols=111  Identities=16%  Similarity=0.108  Sum_probs=85.4

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--CCCCCCCeeEEecccccC-CCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISRL-PFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~  137 (235)
                      .+++||.+|+|.|..+..+++..+..+|+++|+++.+++.|++.+...  +....++++++.+|..+. .-..++||+|+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence            368999999999999999998877789999999999999999987532  112256899999999763 22347899999


Q ss_pred             eccccccc-CC------hHHHHHHHHHhccCCcEEEEEEec
Q 026688          138 AGAAIHCW-SS------PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       138 ~~~~l~~~-~~------~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +...-.+. ..      ...+++.+++.|+|||.+++....
T Consensus       157 ~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s  197 (312)
T d1uira_         157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (312)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence            65432111 11      147899999999999999876543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.27  E-value=4.3e-11  Score=85.08  Aligned_cols=124  Identities=19%  Similarity=0.186  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           44 PGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      |......+.+.+.+.. ..+.+|||++||+|.++...+.++. .+|+++|.++.+++.+++++...+.  ..++++.+.|
T Consensus        23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~--~~~~~i~~~D   99 (182)
T d2fhpa1          23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKE--PEKFEVRKMD   99 (182)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESC
T ss_pred             cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhc--cccccccccc
Confidence            5566778888887764 3579999999999999999999985 4899999999999999999877653  4478999999


Q ss_pred             cccC----CCCCCceeEEEecccccccCChHHHHHHHHH--hccCCcEEEEEEec
Q 026688          123 ISRL----PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI  171 (235)
Q Consensus       123 ~~~~----~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~li~~~~~  171 (235)
                      +.+.    .....+||+|++.--.. ..+....+..+.+  .|+|+|.+++....
T Consensus       100 ~~~~l~~~~~~~~~fDlIflDPPY~-~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         100 ANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             chhhhhhhcccCCCcceEEechhhh-hhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            8652    12346899999765432 2334566777754  69999988876543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.26  E-value=1.5e-10  Score=87.34  Aligned_cols=110  Identities=14%  Similarity=0.120  Sum_probs=85.6

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEecccccC-CCCCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL-PFASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~  138 (235)
                      .+++||-+|.|.|..+..+.+..+..+++++|+++.+++.|++.+... +....++++++..|.... .-..++||+|+.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~  154 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence            368999999999999999998876779999999999999999987542 222257899999998652 223578999997


Q ss_pred             cccccccCC----hHHHHHHHHHhccCCcEEEEEEe
Q 026688          139 GAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       139 ~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ...-..-..    ...+++.+++.|+|||.++....
T Consensus       155 D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~  190 (274)
T d1iy9a_         155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (274)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence            643221111    24789999999999999987653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.26  E-value=9.3e-11  Score=88.68  Aligned_cols=111  Identities=13%  Similarity=0.097  Sum_probs=83.0

Q ss_pred             CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-------CCCCCCeeEEecccccCCCCCCc
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------NFPKENFLLVRADISRLPFASSS  132 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~d~~~~~~~~~~  132 (235)
                      ..+++||.+|+|.|..+..+++.. ..+++++|+++.+++.|++.+....       ....++++++..|....--..++
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            346899999999999999988764 4689999999999999998774321       01256899999998653223478


Q ss_pred             eeEEEecccccccCC----hHHHHHHHHHhccCCcEEEEEEec
Q 026688          133 IDAVHAGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ||+|++...-..-+.    ...+++.+++.|+|||.+++...+
T Consensus       150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence            999997543321111    147899999999999999876544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=1.1e-10  Score=88.63  Aligned_cols=110  Identities=13%  Similarity=0.089  Sum_probs=84.0

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEecccccC-CCCCCceeEEEec
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL-PFASSSIDAVHAG  139 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~  139 (235)
                      +++||-+|+|.|..+..+++..+..+|+++|+++.+++.|++.+... +....++++++..|.... .-..++||+|++.
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D  169 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  169 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEc
Confidence            68999999999999999998877779999999999999999987542 111257899999999763 3335789999976


Q ss_pred             cccccc-CC----hHHHHHHHHHhccCCcEEEEEEec
Q 026688          140 AAIHCW-SS----PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       140 ~~l~~~-~~----~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ..-... +.    ...+++.+++.|+|||.+++...+
T Consensus       170 ~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         170 STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             C----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            433211 11    258899999999999999876543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=5.2e-11  Score=84.26  Aligned_cols=114  Identities=19%  Similarity=0.311  Sum_probs=90.8

Q ss_pred             HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-
Q 026688           49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  127 (235)
Q Consensus        49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-  127 (235)
                      +++.+++.+.+.++..++|..+|.|..+..+++..  ++|+|+|.++.++..+++..       ..++.++..++.++. 
T Consensus         6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~~-------~~~~~~~~~~f~~~~~   76 (182)
T d1wg8a2           6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGLH-------LPGLTVVQGNFRHLKR   76 (182)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHTC-------CTTEEEEESCGGGHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhcc-------ccceeEeehHHHHHHH
Confidence            45677788888889999999999999999999975  49999999999999998642       457889998887642 


Q ss_pred             ----CCCCceeEEEecccc--cccCCh-------HHHHHHHHHhccCCcEEEEEEec
Q 026688          128 ----FASSSIDAVHAGAAI--HCWSSP-------STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ----~~~~~~D~i~~~~~l--~~~~~~-------~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                          ...+.+|.|++...+  .+++++       ...|....+.|+|||.+++..+.
T Consensus        77 ~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          77 HLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             HHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             HHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence                334689999986544  334443       35688889999999999988764

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2e-10  Score=86.92  Aligned_cols=111  Identities=13%  Similarity=0.114  Sum_probs=84.3

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEecccccC-CCCCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL-PFASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~  138 (235)
                      .+++||-+|.|.|..+..+.+..+..+++++|+++.+++.|++.+... +....++++++..|.... .-..++||+|++
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  157 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence            468999999999999999998866779999999999999999987531 112257899999998653 223578999997


Q ss_pred             cccccccCC----hHHHHHHHHHhccCCcEEEEEEec
Q 026688          139 GAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       139 ~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ...-..-..    ...+++.+++.|+|||.+++....
T Consensus       158 D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         158 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             ECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            643211111    137899999999999999987654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.19  E-value=1.5e-10  Score=85.34  Aligned_cols=87  Identities=15%  Similarity=0.278  Sum_probs=73.5

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ....++.+.+.+...++.+|||||||+|.++..+++.+.  +++++|+++.+++..+++...     ..+++++.+|+.+
T Consensus         6 d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~-----~~n~~i~~~D~l~   78 (235)
T d1qama_           6 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQ   78 (235)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGG
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhc-----ccchhhhhhhhhh
Confidence            456788999999888899999999999999999999875  999999999999999988754     4589999999998


Q ss_pred             CCCCCCceeEEEec
Q 026688          126 LPFASSSIDAVHAG  139 (235)
Q Consensus       126 ~~~~~~~~D~i~~~  139 (235)
                      .+++......|+.+
T Consensus        79 ~~~~~~~~~~vv~N   92 (235)
T d1qama_          79 FKFPKNQSYKIFGN   92 (235)
T ss_dssp             CCCCSSCCCEEEEE
T ss_pred             ccccccccceeeee
Confidence            87655444455544

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.17  E-value=2.3e-10  Score=87.23  Aligned_cols=110  Identities=13%  Similarity=0.101  Sum_probs=82.9

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-CCCCCCeeEEecccccC-CCCCCceeEEEe
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA  138 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~  138 (235)
                      .+++||-+|.|.|..+..+++..+..+++++|+++.+++.|++.+.... ....++++++..|.... ....++||+|++
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~  185 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  185 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence            3689999999999999999988766799999999999999999875421 12257899999998763 223578999997


Q ss_pred             cccccccCC----hHHHHHHHHHhccCCcEEEEEEe
Q 026688          139 GAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       139 ~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ...-..-+.    ...+++.+++.|+|||.++....
T Consensus       186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence            644322111    14789999999999999998654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.17  E-value=7.3e-10  Score=84.07  Aligned_cols=111  Identities=18%  Similarity=0.174  Sum_probs=85.3

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEecccccC--CCCCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL--PFASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~--~~~~~~~D~i~  137 (235)
                      .+++||-+|.|.|..+..+.+..+..+++++|+++.+++.|++.+... .....++++++..|....  ....++||+|+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            368999999999999999999877679999999999999999987431 111257899999998653  23356899999


Q ss_pred             ecccccccCC----hHHHHHHHHHhccCCcEEEEEEec
Q 026688          138 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       138 ~~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ....-..-..    ...+++.+++.|+|||.+++...+
T Consensus       160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            7543221111    147899999999999999987644

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.17  E-value=6.4e-11  Score=86.81  Aligned_cols=115  Identities=11%  Similarity=0.061  Sum_probs=89.4

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C--
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--  127 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--  127 (235)
                      .+..++....+++|||+|+++|..+..+++..+ +++++.+|.++...+.|++.+...+.  ..++++..+++.+. +  
T Consensus        50 ~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~--~~~i~~~~g~a~~~L~~l  127 (227)
T d1susa1          50 FLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPVLDEM  127 (227)
T ss_dssp             HHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc--ccceeeeehHHHHHHHHH
Confidence            333333333478999999999999999998765 58999999999999999999988775  55899999999653 2  


Q ss_pred             ----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          128 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                          ...++||+|+...-=   .+....++.+.++|+|||.+++-...
T Consensus       128 ~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         128 IKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             HHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             HhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEccCC
Confidence                124689999975322   23457888999999999999986543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=4.2e-10  Score=87.54  Aligned_cols=113  Identities=12%  Similarity=0.123  Sum_probs=84.7

Q ss_pred             hhcCCCCCCeEEEecCCCchHHHHHHHc-----CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688           55 GYLKPVLGGNIIDASCGSGLFSRIFAKS-----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  129 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~-----~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (235)
                      .++...++.+|||.+||+|.++..+.++     .....++|+|+++.++..|+..+...+    ....+...|..... +
T Consensus       111 ~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~-~  185 (328)
T d2f8la1         111 KVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR----QKMTLLHQDGLANL-L  185 (328)
T ss_dssp             HHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT----CCCEEEESCTTSCC-C
T ss_pred             HHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh----hhhhhhcccccccc-c
Confidence            3445666789999999999999888653     234589999999999999998877653    35667777765533 3


Q ss_pred             CCceeEEEecccccccCCh------------------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          130 SSSIDAVHAGAAIHCWSSP------------------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~~~~~------------------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ..+||+|+++-.+......                  ..++..+.+.|+|||++.+..+..
T Consensus       186 ~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         186 VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            5789999998654322111                  247999999999999999888753

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=99.07  E-value=1e-11  Score=92.16  Aligned_cols=95  Identities=15%  Similarity=0.211  Sum_probs=77.6

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ....++.|.+.+...++.+|||||||+|.++..+++.+.  +|+++|+|+.+++.+++++..     ..++++.++|+.+
T Consensus        14 d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~-----~~n~~ii~~D~l~   86 (245)
T d1yuba_          14 SEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQ   86 (245)
T ss_dssp             CTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTT
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhh-----ccchhhhhhhhhc
Confidence            456678899999888899999999999999999999876  999999999998888776543     4589999999999


Q ss_pred             CCCCCCceeEEEecccccccCCh
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSP  148 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~  148 (235)
                      .+++...++.|+++... |+..+
T Consensus        87 ~~~~~~~~~~vv~NLPY-~Ist~  108 (245)
T d1yuba_          87 FQFPNKQRYKIVGNIPY-HLSTQ  108 (245)
T ss_dssp             TTCCCSSEEEEEEECCS-SSCHH
T ss_pred             cccccceeeeEeeeeeh-hhhHH
Confidence            88776777777766554 34433

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=9.6e-09  Score=80.64  Aligned_cols=110  Identities=15%  Similarity=0.236  Sum_probs=84.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .+.+.+.+.+++...++.+|||+-||.|.++..+++...  +|+|+|.++.+++.|++++..++   ..++.++.+|..+
T Consensus       197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~---i~n~~~~~~~~~~  271 (358)
T d1uwva2         197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNG---LQNVTFYHENLEE  271 (358)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCTTS
T ss_pred             hhHHHHHHHHhhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhcc---cccceeeecchhh
Confidence            345566777888877789999999999999999998865  99999999999999999988876   4689999999876


Q ss_pred             C----CCCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEE
Q 026688          126 L----PFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGT  168 (235)
Q Consensus       126 ~----~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~  168 (235)
                      .    ......+|+|++       +.|    .+.++.+.+. +|.-.++++
T Consensus       272 ~~~~~~~~~~~~d~vil-------DPPR~G~~~~~~~l~~~-~~~~ivYVS  314 (358)
T d1uwva2         272 DVTKQPWAKNGFDKVLL-------DPARAGAAGVMQQIIKL-EPIRIVYVS  314 (358)
T ss_dssp             CCSSSGGGTTCCSEEEE-------CCCTTCCHHHHHHHHHH-CCSEEEEEE
T ss_pred             hhhhhhhhhccCceEEe-------CCCCccHHHHHHHHHHc-CCCEEEEEe
Confidence            3    122467899985       222    2556666664 565455443

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.95  E-value=4.9e-09  Score=74.31  Aligned_cols=125  Identities=16%  Similarity=0.191  Sum_probs=88.0

Q ss_pred             CCCHHHHHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688           44 PGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  122 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  122 (235)
                      |...+..+.+.+.+.. ..+.+|||+.||+|.++...+.+|. ..|+.+|.+...++..++++...+.. .....+...|
T Consensus        25 Pt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~-~~~~~~~~~d  102 (183)
T d2ifta1          25 PTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCS-SEQAEVINQS  102 (183)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCC-TTTEEEECSC
T ss_pred             cCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhccc-cccccccccc
Confidence            4455666666666643 2468999999999999999999986 49999999999999999998775431 2345666666


Q ss_pred             cccC---CCCCCceeEEEecccccccCChHHHHHHHHH--hccCCcEEEEEEec
Q 026688          123 ISRL---PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI  171 (235)
Q Consensus       123 ~~~~---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~li~~~~~  171 (235)
                      ..+.   .....+||+|++.--... ......+..+..  .|+++|.+++....
T Consensus       103 ~~~~l~~~~~~~~fDlIFlDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         103 SLDFLKQPQNQPHFDVVFLDPPFHF-NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             HHHHTTSCCSSCCEEEEEECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             ccccccccccCCcccEEEechhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            5431   223457999997655432 223466776654  69999988887654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.94  E-value=3.5e-09  Score=77.49  Aligned_cols=114  Identities=18%  Similarity=0.256  Sum_probs=85.6

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  124 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  124 (235)
                      |....+.+.+.+...++.+|||.|||+|.++..+.+..+ ...++|+|+++..+..            .....+.+.|..
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~------------~~~~~~~~~~~~   71 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL------------PPWAEGILADFL   71 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC------------CTTEEEEESCGG
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh------------cccceeeeeehh
Confidence            677888899999888889999999999999988876643 3579999999864322            234567788877


Q ss_pred             cCCCCCCceeEEEecccccccC---C--------------------------hHHHHHHHHHhccCCcEEEEEEecc
Q 026688          125 RLPFASSSIDAVHAGAAIHCWS---S--------------------------PSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       125 ~~~~~~~~~D~i~~~~~l~~~~---~--------------------------~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ... ....||+|+++..+....   .                          ...++.++.+.|+|||.+.+..+..
T Consensus        72 ~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          72 LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             ccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            654 357899999875542211   0                          1255788999999999999988753

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=6.9e-09  Score=74.56  Aligned_cols=101  Identities=19%  Similarity=0.190  Sum_probs=83.8

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++.+|+|+|+|.|.-+..++-..|+.+++.+|.+..-+...++.....+   ..++++++..+++.. ...+||+|++..
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~~~-~~~~fD~V~sRA  140 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEFP-SEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC---Ccceeeeccchhhhc-cccccceehhhh
Confidence            3579999999999999999988899999999999988888777766655   357999999998864 346899999744


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                          +.+...++.-+...++++|.+++.-
T Consensus       141 ----~~~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         141 ----FASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             ----SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ----hcCHHHHHHHHHHhcCCCcEEEEEC
Confidence                3456788999999999999988754

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.91  E-value=2.2e-08  Score=76.79  Aligned_cols=124  Identities=20%  Similarity=0.179  Sum_probs=93.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ..........+.+.++.+|||+.||.|.-+..++... ..+.+++.|.++.-+...++++...+   ..++.+...|...
T Consensus       102 D~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~---~~~i~~~~~d~~~  178 (313)
T d1ixka_         102 EASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLH  178 (313)
T ss_dssp             CHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGG
T ss_pred             cccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH---hhccccccccccc
Confidence            3444555666778889999999999999888887764 35689999999999999998888766   4567777778776


Q ss_pred             CCCCCCceeEEEecc------cccccCC------h----------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          126 LPFASSSIDAVHAGA------AIHCWSS------P----------STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~------~l~~~~~------~----------~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      .+.....||.|++.-      ++..-++      +          .++|.++.+.+||||.|+.++.+..
T Consensus       179 ~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~  248 (313)
T d1ixka_         179 IGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  248 (313)
T ss_dssp             GGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             cccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence            665567899999742      2211111      1          2678899999999999999998764

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.88  E-value=9.8e-09  Score=82.39  Aligned_cols=130  Identities=15%  Similarity=0.127  Sum_probs=99.3

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-------------CceEEEEeCCHHHHHHHHHHhhh
Q 026688           41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-------------FSLVVALDYSENMLKQCYEFVQQ  107 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-------------~~~v~~~D~s~~~~~~a~~~~~~  107 (235)
                      +.+..|....+.+.+.+.+.++.+|+|.+||+|.++..+.++..             ...+.|+|+++.+...|+-++..
T Consensus       142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            44677889999999999988889999999999999988766421             23599999999999999988766


Q ss_pred             cCCCCCCCeeEEecccccCCCCCCceeEEEecccccccC----------------Ch-HHHHHHHHHhccCCcEEEEEEe
Q 026688          108 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWS----------------SP-STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       108 ~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~----------------~~-~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .+.. .....+...|....+ +..+||+|+++--+..-.                +. ..++..+.+.|+|||.+.++.+
T Consensus       222 ~g~~-~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         222 HGIG-TDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             TTCC-SSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCc-cccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence            5432 234667778876543 457899999985552211                01 2589999999999999999887


Q ss_pred             cc
Q 026688          171 IV  172 (235)
Q Consensus       171 ~~  172 (235)
                      ..
T Consensus       300 ~~  301 (425)
T d2okca1         300 DN  301 (425)
T ss_dssp             HH
T ss_pred             hH
Confidence            53

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.86  E-value=3.9e-08  Score=71.94  Aligned_cols=102  Identities=17%  Similarity=0.085  Sum_probs=81.0

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC---CCCceeEEE
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAVH  137 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~i~  137 (235)
                      ...+|+|+|+|.|.-+..++-..|+.+++.+|.+..-+...+......+   ..++.+++..++....   ..+.||+|+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~---L~n~~i~~~R~E~~~~~~~~~~~~D~v~  146 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---LENTTFCHDRAETFGQRKDVRESYDIVT  146 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC---CCCcEEEeehhhhccccccccccceEEE
Confidence            4679999999999999988888888999999999877777666655554   3578888888776431   236899999


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +.    .+.....++.-+...+++||.+++.-
T Consensus       147 sR----Ava~l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         147 AR----AVARLSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             EE----CCSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             Eh----hhhCHHHHHHHHhhhcccCCEEEEEC
Confidence            84    34556788999999999999988754

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=1.8e-07  Score=65.67  Aligned_cols=99  Identities=20%  Similarity=0.250  Sum_probs=74.8

Q ss_pred             CCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------CCC
Q 026688           60 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS  130 (235)
Q Consensus        60 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~  130 (235)
                      .++.+|||+||++|.+++.+.+. .....++++|+.+-              .+..++.+..+|+.+..        ...
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~--------------~~i~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM--------------DPIVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC--------------CCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc--------------cccCCceEeecccccchhhhhhhhhccC
Confidence            45889999999999999988875 44568999998651              11457889999987532        234


Q ss_pred             CceeEEEecccccccCCh-----------HHHHHHHHHhccCCcEEEEEEecc
Q 026688          131 SSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      .++|+|++......-.+.           ...+.-+.++|++||.+++-.+..
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g  139 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence            689999998765433222           256778899999999999988753

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.2e-08  Score=75.15  Aligned_cols=90  Identities=11%  Similarity=0.095  Sum_probs=73.5

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      ....++.|.+.+...++..|||||+|+|.++..+++.+.  +++++|+|+.+++..++.+.....  ..+++++.+|+..
T Consensus         6 d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~--~~~~~~i~~D~l~   81 (278)
T d1zq9a1           6 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPV--ASKLQVLVGDVLK   81 (278)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTT--GGGEEEEESCTTT
T ss_pred             CHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhcc--ccchhhhHHHHhh
Confidence            356778888888887889999999999999999999976  999999999999999998865432  3579999999988


Q ss_pred             CCCCCCceeEEEeccc
Q 026688          126 LPFASSSIDAVHAGAA  141 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~  141 (235)
                      .+++  .++.|+.+.-
T Consensus        82 ~~~~--~~~~vV~NLP   95 (278)
T d1zq9a1          82 TDLP--FFDTCVANLP   95 (278)
T ss_dssp             SCCC--CCSEEEEECC
T ss_pred             hhhh--hhhhhhcchH
Confidence            7643  3456666533

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.81  E-value=1.9e-09  Score=79.02  Aligned_cols=107  Identities=17%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             HhhcCCCCCCeEEEecCCCchHHHHHHH----cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--
Q 026688           54 KGYLKPVLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  127 (235)
Q Consensus        54 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~----~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--  127 (235)
                      .+++...++++|||+|++.|..+..++.    .++.++++++|+++........     .   ..++++..+|..+..  
T Consensus        73 ~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----~---~~~I~~i~gDs~~~~~~  144 (232)
T d2bm8a1          73 HDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----D---MENITLHQGDCSDLTTF  144 (232)
T ss_dssp             HHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----G---CTTEEEEECCSSCSGGG
T ss_pred             HHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----c---ccceeeeecccccHHHH
Confidence            3333333468999999999987776553    3456799999998743322111     1   468999999976532  


Q ss_pred             --CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                        +....+|+|+.... |+.......+ .+..+|+|||++++.+.
T Consensus       145 ~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         145 EHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             GGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             HHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence              33456888876544 4322222223 45689999999999765

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=5.7e-08  Score=73.45  Aligned_cols=123  Identities=20%  Similarity=0.150  Sum_probs=90.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-
Q 026688           48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-  126 (235)
Q Consensus        48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-  126 (235)
                      .........+...++.+|||+.+|.|.-+..++....+..++++|+++.-++..++++...+   ..++.....|.... 
T Consensus        89 ~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g---~~~~~~~~~~~~~~~  165 (284)
T d1sqga2          89 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG---MKATVKQGDGRYPSQ  165 (284)
T ss_dssp             HHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEEECCTTCTHH
T ss_pred             ccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc---ccceeeeccccccch
Confidence            34445556677888999999999999999999988777899999999999999999888765   23444444443322 


Q ss_pred             CCCCCceeEEEecc------cccccCCh----------------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688          127 PFASSSIDAVHAGA------AIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIVD  173 (235)
Q Consensus       127 ~~~~~~~D~i~~~~------~l~~~~~~----------------~~~l~~~~~~L~pgG~li~~~~~~~  173 (235)
                      ......||.|++.-      ++..-++.                .++|+++.+.|+|||.|+.++.+..
T Consensus       166 ~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~  234 (284)
T d1sqga2         166 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  234 (284)
T ss_dssp             HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             hcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence            12346899999742      22221221                2678899999999999999998764

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=1.3e-08  Score=75.38  Aligned_cols=75  Identities=5%  Similarity=0.095  Sum_probs=64.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688           46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  125 (235)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  125 (235)
                      .....+.|.+.+...++..|||||||+|.++..+++.+.  +|+++|+|+.+++..+++...     ..+++++.+|+.+
T Consensus         6 d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~~~~ii~~D~l~   78 (252)
T d1qyra_           6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMT   78 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGG
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhh-----ccchhHHhhhhhh
Confidence            456778888988888899999999999999999999875  999999999999998875433     3579999999987


Q ss_pred             CC
Q 026688          126 LP  127 (235)
Q Consensus       126 ~~  127 (235)
                      .+
T Consensus        79 ~~   80 (252)
T d1qyra_          79 FN   80 (252)
T ss_dssp             CC
T ss_pred             hc
Confidence            64

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.9e-06  Score=65.14  Aligned_cols=119  Identities=13%  Similarity=0.072  Sum_probs=85.6

Q ss_pred             HHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC-
Q 026688           52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-  129 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-  129 (235)
                      .....+.+.++.+|||+.+|+|.-+.+++.. .....++++|+++.-++..++++...+   ..++.+...|....... 
T Consensus        85 l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g---~~~~~~~~~d~~~~~~~~  161 (293)
T d2b9ea1          85 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSD  161 (293)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTC
T ss_pred             ccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC---ccceeeeehhhhhhcccc
Confidence            3445567777899999999999988888765 445689999999999999999998876   45788888888765321 


Q ss_pred             --CCceeEEEeccc------ccccC---------C--h-------HHHHHHHHHhccCCcEEEEEEeccCC
Q 026688          130 --SSSIDAVHAGAA------IHCWS---------S--P-------STGVAEISRVLRPGGVFVGTTYIVDG  174 (235)
Q Consensus       130 --~~~~D~i~~~~~------l~~~~---------~--~-------~~~l~~~~~~L~pgG~li~~~~~~~~  174 (235)
                        .+.||.|++.--      +..-+         +  .       .+++..+. .++|||.|+.++.+...
T Consensus       162 ~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~  231 (293)
T d2b9ea1         162 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ  231 (293)
T ss_dssp             GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG
T ss_pred             cccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh
Confidence              257999997522      11111         1  0       13444555 47999999999987653

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=4.1e-07  Score=74.66  Aligned_cols=132  Identities=11%  Similarity=0.008  Sum_probs=92.8

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC----C--------------CceEEEEeCCHHHHHHHH
Q 026688           41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG----L--------------FSLVVALDYSENMLKQCY  102 (235)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~----~--------------~~~v~~~D~s~~~~~~a~  102 (235)
                      +.+..|....+.+.+.+.+.++.+|+|.+||+|.++....+..    .              ...++|+|+++.+...|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            5677789999999999998888999999999999988765531    1              125899999999999998


Q ss_pred             HHhhhcCCCCC--CCeeEEecccccCC-CCCCceeEEEecccccccC-------------Ch-HHHHHHHHHhccCCcEE
Q 026688          103 EFVQQESNFPK--ENFLLVRADISRLP-FASSSIDAVHAGAAIHCWS-------------SP-STGVAEISRVLRPGGVF  165 (235)
Q Consensus       103 ~~~~~~~~~~~--~~~~~~~~d~~~~~-~~~~~~D~i~~~~~l~~~~-------------~~-~~~l~~~~~~L~pgG~l  165 (235)
                      -++..++....  ..-.+...+....+ ....+||+|+++--+.--.             +. ..++.++.+.|+|||++
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~  303 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA  303 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence            87765432100  01223334433211 2346899999985442110             11 25899999999999999


Q ss_pred             EEEEecc
Q 026688          166 VGTTYIV  172 (235)
Q Consensus       166 i~~~~~~  172 (235)
                      .++.+..
T Consensus       304 aiIlP~~  310 (524)
T d2ar0a1         304 AVVVPDN  310 (524)
T ss_dssp             EEEEEHH
T ss_pred             EEEEehH
Confidence            9988753

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.37  E-value=1.4e-06  Score=68.03  Aligned_cols=107  Identities=17%  Similarity=0.085  Sum_probs=80.8

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCC------------CCCeeEEecccccCC-C
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP------------KENFLLVRADISRLP-F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~------------~~~~~~~~~d~~~~~-~  128 (235)
                      +.+|||..||+|..+..++...+...|++.|+|+..++.+++++..++...            ...+.+.+.|+...- .
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~  125 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  125 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence            689999999999999987775555689999999999999999998764311            113455566654321 1


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ....||+|.+.-    +..+..+++.+.+.++.||.|.++....
T Consensus       126 ~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTaTD~  165 (375)
T d2dula1         126 RHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTATDG  165 (375)
T ss_dssp             STTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             hcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEecCc
Confidence            245799998643    5566789999999999999999876543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.22  E-value=1.3e-05  Score=58.08  Aligned_cols=114  Identities=12%  Similarity=0.029  Sum_probs=70.6

Q ss_pred             HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEecc-cccCC
Q 026688           50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRAD-ISRLP  127 (235)
Q Consensus        50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d-~~~~~  127 (235)
                      +.++.+.....+..+|+|+|||.|..+..++.+.+...+.|+++--..-+.     ........-+ +.+...+ +..  
T Consensus        55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-----P~~~~~~~~ni~~~~~~~dv~~--  127 (257)
T d2p41a1          55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-----PIPMSTYGWNLVRLQSGVDVFF--  127 (257)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-----CCCCCSTTGGGEEEECSCCTTT--
T ss_pred             HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-----CccccccccccccchhhhhHHh--
Confidence            344444445566889999999999999999988766688888884221000     0000000011 2332222 222  


Q ss_pred             CCCCceeEEEecccccccCCh-------HHHHHHHHHhccCCcEEEEEEec
Q 026688          128 FASSSIDAVHAGAAIHCWSSP-------STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~-------~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .+....|+|+|..+-. -+++       .+++.-+.+.|+|||.+++-.+.
T Consensus       128 l~~~~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~  177 (257)
T d2p41a1         128 IPPERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN  177 (257)
T ss_dssp             SCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred             cCCCcCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence            3357899999986533 3333       25677888999999998886654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.91  E-value=0.00023  Score=48.81  Aligned_cols=103  Identities=17%  Similarity=0.084  Sum_probs=68.1

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------  127 (235)
                      ...+..++.+||-+|||. |..+..+++.. .++|+++|.++.-++.+++.-.        ...+...+.....      
T Consensus        20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga--------~~~~~~~~~~~~~~~~~~~   90 (170)
T d1e3ja2          20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGA--------DVTLVVDPAKEEESSIIER   90 (170)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC--------SEEEECCTTTSCHHHHHHH
T ss_pred             HHhCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCC--------cEEEeccccccccchhhhh
Confidence            344566789999999985 77777777664 4699999999999999887421        1222111111100      


Q ss_pred             ---CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          128 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       128 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                         ...+.+|+|+-.-      .....+..+.++++|+|++++.....
T Consensus        91 ~~~~~g~g~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          91 IRSAIGDLPNVTIDCS------GNEKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             HHHHSSSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             hhcccccCCceeeecC------CChHHHHHHHHHHhcCCceEEEecCC
Confidence               1135689888422      22356888999999999999876543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.90  E-value=0.00011  Score=50.81  Aligned_cols=104  Identities=13%  Similarity=0.079  Sum_probs=68.7

Q ss_pred             HHHhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----
Q 026688           52 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----  126 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----  126 (235)
                      .+....+..++.+||-+|||. |..+..+++......++++|.++.-++.+++.=         -..++..+-.+.    
T Consensus        19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G---------a~~~i~~~~~~~~~~i   89 (174)
T d1f8fa2          19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG---------ATHVINSKTQDPVAAI   89 (174)
T ss_dssp             HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT---------CSEEEETTTSCHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC---------CeEEEeCCCcCHHHHH
Confidence            445556677899999999986 556666666543347889999999888887641         112322222211    


Q ss_pred             -CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          127 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       ....+.+|+|+-.     .. ....++.+.++++|+|.+++...
T Consensus        90 ~~~t~gg~D~vid~-----~G-~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          90 KEITDGGVNFALES-----TG-SPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             HHHTTSCEEEEEEC-----SC-CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHcCCCCcEEEEc-----CC-cHHHHHHHHhcccCceEEEEEee
Confidence             1223579998832     22 23567889999999999988654

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=97.86  E-value=0.00027  Score=54.24  Aligned_cols=157  Identities=15%  Similarity=0.078  Sum_probs=93.6

Q ss_pred             CCeEEEecCCCchHHHHHHH----------------cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC--eeEEeccc
Q 026688           62 GGNIIDASCGSGLFSRIFAK----------------SGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN--FLLVRADI  123 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~----------------~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~--~~~~~~d~  123 (235)
                      .-+|.|+||.+|..+..+..                .-|..+|..-|+-..--...=+.+...... ..+  +..+.+.+
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~-~~~~f~~gvpGSF  130 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV-DGVCFINGVPGSF  130 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC-TTCEEEEEEESCS
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccC-CCCeEEEecCCch
Confidence            36799999999988743221                124567788887543333322223221100 111  23345555


Q ss_pred             ccCCCCCCceeEEEecccccccCC------------------h---------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          124 SRLPFASSSIDAVHAGAAIHCWSS------------------P---------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       124 ~~~~~~~~~~D~i~~~~~l~~~~~------------------~---------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ..--+|.++.|++++..++|++..                  +               ..+|+.=.+-|.|||.+++...
T Consensus       131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~  210 (359)
T d1m6ex_         131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence            554477899999999999998742                  0               1356666778899999999988


Q ss_pred             ccCCCccc----chhHHHHHHhHh--------------hcCCceeecCHHHHHHHHHHcC-CceeEEE
Q 026688          171 IVDGPFNL----IPFSRLLRQNMM--------------QISGSYTFLSEREIEDLCRACG-LVDFKCT  219 (235)
Q Consensus       171 ~~~~~~~~----~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~  219 (235)
                      ..+.....    ......+...|.              .+.-+..+.+++|++..+++.| |.+.+..
T Consensus       211 gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e  278 (359)
T d1m6ex_         211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE  278 (359)
T ss_dssp             ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred             ccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeE
Confidence            77542211    111222222221              1223356778999999999987 5554443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=3.8e-05  Score=58.64  Aligned_cols=74  Identities=14%  Similarity=0.068  Sum_probs=58.0

Q ss_pred             CHHHHHHHHhhcCC------CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEE
Q 026688           46 PEKEFELMKGYLKP------VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  119 (235)
Q Consensus        46 ~~~~~~~i~~~~~~------~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~  119 (235)
                      ....++.|.+.+..      ..+.+|||||.|.|.++..+.+.+.-.+++++|+++...+..++.+.      ..+++++
T Consensus        22 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------~~~~~ii   95 (322)
T d1i4wa_          22 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------GSPLQIL   95 (322)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------TSSCEEE
T ss_pred             CHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------CCCcEEE
Confidence            56677777776542      23678999999999999999887422489999999999999887653      3478899


Q ss_pred             eccccc
Q 026688          120 RADISR  125 (235)
Q Consensus       120 ~~d~~~  125 (235)
                      .+|+..
T Consensus        96 ~~D~l~  101 (322)
T d1i4wa_          96 KRDPYD  101 (322)
T ss_dssp             CSCTTC
T ss_pred             eCchhh
Confidence            999864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.00029  Score=48.36  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=66.9

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-------
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------  127 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-------  127 (235)
                      ..+..++.+||-+|+|. |..+..+++.....+|+++|.++.-++.|++.-.        . .+...+-....       
T Consensus        21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga--------~-~~~~~~~~~~~~~~~~~~   91 (171)
T d1pl8a2          21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA--------D-LVLQISKESPQEIARKVE   91 (171)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC--------S-EEEECSSCCHHHHHHHHH
T ss_pred             HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC--------c-cccccccccccccccccc
Confidence            34566789999999987 6666666666433489999999999998876311        1 11211111100       


Q ss_pred             -CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          128 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                       .....+|+|+-..     . ....++.+.+++++||++++.....
T Consensus        92 ~~~g~g~Dvvid~~-----G-~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          92 GQLGCKPEVTIECT-----G-AEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             HHHTSCCSEEEECS-----C-CHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             ccCCCCceEEEecc-----C-CchhHHHHHHHhcCCCEEEEEecCC
Confidence             0124689988422     2 2356889999999999999876544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=0.00027  Score=49.13  Aligned_cols=104  Identities=22%  Similarity=0.278  Sum_probs=67.0

Q ss_pred             HHHhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---ccccC-
Q 026688           52 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISRL-  126 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~~-  126 (235)
                      .+.+.....++.+||-+|+|. |.+...+++..-..+|+++|.++.-++.+++.-        .. .++..   +..+. 
T Consensus        19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lG--------a~-~vi~~~~~~~~~~~   89 (182)
T d1vj0a2          19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG--------AD-LTLNRRETSVEERR   89 (182)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT--------CS-EEEETTTSCHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccccc--------ce-EEEeccccchHHHH
Confidence            333444556789999999985 777777777643237999999999999887631        11 11111   11110 


Q ss_pred             ----C-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          127 ----P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       127 ----~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                          . .....+|+|+-.-     .. ...++...++++|||++++...
T Consensus        90 ~~i~~~~~~~g~Dvvid~v-----G~-~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2          90 KAIMDITHGRGADFILEAT-----GD-SRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             HHHHHHTTTSCEEEEEECS-----SC-TTHHHHHHHHEEEEEEEEECCC
T ss_pred             HHHHHhhCCCCceEEeecC-----Cc-hhHHHHHHHHhcCCCEEEEEee
Confidence                0 1234699988432     22 2457889999999999987654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.65  E-value=8.4e-05  Score=54.19  Aligned_cols=92  Identities=13%  Similarity=0.044  Sum_probs=62.9

Q ss_pred             HHHhhcCCCC--CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHh---hhcCCC---CCCCeeEEeccc
Q 026688           52 LMKGYLKPVL--GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV---QQESNF---PKENFLLVRADI  123 (235)
Q Consensus        52 ~i~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~---~~~~~~~~~~d~  123 (235)
                      .+...+....  ..+|||.-||.|..+..++..+.  +|+++|.++.+....+..+   ......   ...+++++++|.
T Consensus        77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            3444444332  34899999999999999999875  9999999997655555433   221100   013689999998


Q ss_pred             ccC-CCCCCceeEEEeccccccc
Q 026688          124 SRL-PFASSSIDAVHAGAAIHCW  145 (235)
Q Consensus       124 ~~~-~~~~~~~D~i~~~~~l~~~  145 (235)
                      .+. .-..+.||+|.+.-.+.+-
T Consensus       155 ~~~L~~~~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         155 LTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCC
T ss_pred             HHHHhccCCCCCEEEECCCCccc
Confidence            653 3234679999988777543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.65  E-value=0.00022  Score=49.19  Aligned_cols=102  Identities=13%  Similarity=0.203  Sum_probs=67.8

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-----C-
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~-  127 (235)
                      +..+..++.+||-+|||. |..+..+++..--.+|+++|.++.-++.+++.=.         ..++...-.+.     . 
T Consensus        21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa---------~~~i~~~~~~~~~~v~~~   91 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA---------TDILNYKNGHIEDQVMKL   91 (174)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC---------SEEECGGGSCHHHHHHHH
T ss_pred             HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc---------cccccccchhHHHHHHHH
Confidence            445667789999999987 7888888886432479999999998888876311         11221111111     0 


Q ss_pred             CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .....+|+|+-.-.     . ...++...++++|+|.+++....
T Consensus        92 t~g~G~D~vid~~g-----~-~~~~~~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2          92 TNGKGVDRVIMAGG-----G-SETLSQAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             TTTSCEEEEEECSS-----C-TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             hhccCcceEEEccC-----C-HHHHHHHHHHHhcCCEEEEEeec
Confidence            12345999884322     2 24578889999999999986543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.61  E-value=0.00036  Score=49.03  Aligned_cols=105  Identities=16%  Similarity=0.111  Sum_probs=69.8

Q ss_pred             hhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------
Q 026688           55 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  127 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------  127 (235)
                      +.....++.+||.+|||. |..+..+++......|+++|.++.-++.|++.-          ..... +..+.+      
T Consensus        19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G----------a~~~~-~~~~~~~~~~i~   87 (195)
T d1kola2          19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG----------FEIAD-LSLDTPLHEQIA   87 (195)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT----------CEEEE-TTSSSCHHHHHH
T ss_pred             HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc----------ccEEE-eCCCcCHHHHHH
Confidence            345667799999999998 666677776644458999999999999888641          11111 111111      


Q ss_pred             --CCCCceeEEEeccccc------c---cCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 --FASSSIDAVHAGAAIH------C---WSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 --~~~~~~D~i~~~~~l~------~---~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                        .....+|+++-.-...      +   .......++.+.++++|||.+.+...
T Consensus        88 ~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          88 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             HHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence              1235689999543321      1   11224689999999999999998754

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=97.59  E-value=0.001  Score=49.76  Aligned_cols=156  Identities=13%  Similarity=0.017  Sum_probs=92.0

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C-------CCCCce
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-------FASSSI  133 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-------~~~~~~  133 (235)
                      ...|+.+|||.-.-...+ ...+...++=+|. |++++.-++.+...+..+..+..++..|+.+. .       +..+..
T Consensus        90 ~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~p  167 (297)
T d2uyoa1          90 IRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR  167 (297)
T ss_dssp             CCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred             CCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCC
Confidence            457777999986655544 2234456666664 77888777777765543345677788888642 1       222344


Q ss_pred             eEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhc---------CCceeecCHH
Q 026688          134 DAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI---------SGSYTFLSER  202 (235)
Q Consensus       134 D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  202 (235)
                      -++++-.++.+++..  .++++.+.+...||+.|++.........................         .......++.
T Consensus       168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (297)
T d2uyoa1         168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRA  247 (297)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCC
T ss_pred             EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccCCCchh
Confidence            566666777777654  58899999999999999887554322111111111111111000         0011223456


Q ss_pred             HHHHHHHHcCCceeEEE
Q 026688          203 EIEDLCRACGLVDFKCT  219 (235)
Q Consensus       203 ~~~~~l~~~Gf~~~~~~  219 (235)
                      +....|..+||++....
T Consensus       248 ~~~~~l~~~Gw~~~~~~  264 (297)
T d2uyoa1         248 VVADWLNRHGWRATAQS  264 (297)
T ss_dssp             CHHHHHTTTTEEEEEEE
T ss_pred             hHHHHHHhCCCEEEEec
Confidence            78899999999865543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.53  E-value=0.0007  Score=46.67  Aligned_cols=107  Identities=12%  Similarity=0.044  Sum_probs=64.4

Q ss_pred             HHhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-----
Q 026688           53 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----  126 (235)
Q Consensus        53 i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----  126 (235)
                      +....+.+++.+|+-+|||. |..+..+++..-..+|+++|.+++-++.|++.=..        ..+-..+....     
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~--------~~in~~~~~~~~~~~~   92 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT--------ECISPKDSTKPISEVL   92 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS--------EEECGGGCSSCHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc--------EEECccccchHHHHHH
Confidence            44555667789999999987 55566666654346899999999999999885321        11111111110     


Q ss_pred             -CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          127 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       127 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                       ......+|+++-     ....+......+..+++++|.+++.....
T Consensus        93 ~~~~g~G~d~vi~-----~~g~~~~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2          93 SEMTGNNVGYTFE-----VIGHLETMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             HHHHTSCCCEEEE-----CSCCHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred             HHhccccceEEEE-----eCCchHHHHHHHHHhhcCCeEEEEEEccc
Confidence             012356888883     23333333334444556668888876443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00022  Score=48.92  Aligned_cols=99  Identities=15%  Similarity=0.111  Sum_probs=65.2

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCCCCCce
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSI  133 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~  133 (235)
                      ..+..++.+||-+|+|. |.++..+++.. .++++++|.++.-++.+++.=        .. .++...-.. .....+.+
T Consensus        25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lG--------ad-~~i~~~~~~~~~~~~~~~   94 (168)
T d1uufa2          25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALG--------AD-EVVNSRNADEMAAHLKSF   94 (168)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHT--------CS-EEEETTCHHHHHTTTTCE
T ss_pred             HhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccC--------Cc-EEEECchhhHHHHhcCCC
Confidence            45667789999999986 77777777764 458889999988777776531        11 122222111 11223579


Q ss_pred             eEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      |+++..-.-.      ..+....++++|+|.+++...
T Consensus        95 D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          95 DFILNTVAAP------HNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             EEEEECCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred             ceeeeeeecc------hhHHHHHHHHhcCCEEEEecc
Confidence            9988543221      236788899999999998654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.47  E-value=0.00036  Score=47.98  Aligned_cols=97  Identities=18%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CCCCc
Q 026688           59 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FASSS  132 (235)
Q Consensus        59 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~  132 (235)
                      ..++.+||-+|+|. |..+..+++......++++|.++.-++.+++.-         ...++..+-....     .....
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g---------a~~~i~~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG---------ADHVVDARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT---------CSEEEETTSCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc---------cceeecCcccHHHHHHHhhCCCC
Confidence            35688999999987 556566665432358899999998888887632         1222222211110     12356


Q ss_pred             eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      +|+|+-...      ....++...+.++++|++++...
T Consensus       101 ~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         101 VNVAMDFVG------SQATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EEEEEESSC------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred             ceEEEEecC------cchHHHHHHHHHhCCCEEEEEeC
Confidence            898884222      22458889999999999998764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.45  E-value=0.0014  Score=45.07  Aligned_cols=104  Identities=13%  Similarity=0.029  Sum_probs=69.2

Q ss_pred             HHhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----
Q 026688           53 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----  127 (235)
Q Consensus        53 i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----  127 (235)
                      +.......++.+||-+|||. |..+..+++..--..|+++|.++.-++.+++.=         -..++...-.+..    
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~G---------a~~~i~~~~~~~~~~~~   90 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG---------ATDCLNPRELDKPVQDV   90 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHH
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhC---------CCcccCCccchhhhhhh
Confidence            34445567789999999998 888888888754457999999999888887731         1122211111100    


Q ss_pred             ---CCCCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEec
Q 026688          128 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTYI  171 (235)
Q Consensus       128 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~~  171 (235)
                         .....+|+++-.     .. ....+....++++|| |.+++....
T Consensus        91 ~~~~~~~G~d~vie~-----~G-~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          91 ITELTAGGVDYSLDC-----AG-TAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             HHHHHTSCBSEEEES-----SC-CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             HhhhhcCCCcEEEEe-----cc-cchHHHHHHHHhhcCCeEEEecCCC
Confidence               123568998832     22 235688999999996 999887653

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.44  E-value=0.00032  Score=51.27  Aligned_cols=60  Identities=18%  Similarity=0.197  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhh
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  106 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~  106 (235)
                      +-+..+.+.+++... .++..|||.-||+|..+.+..+.+.  ..+|+|+++..++.|++++.
T Consensus       196 ~kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R--~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHc
Confidence            456788888888776 4478999999999999999999887  99999999999999999874

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.42  E-value=0.00011  Score=49.97  Aligned_cols=99  Identities=16%  Similarity=0.137  Sum_probs=69.0

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  139 (235)
                      ++.+|+-+|+|. |..+...+... .+.|+++|.+++.++..+.....       ++.+...+-..+.-.-...|+||..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~-------~~~~~~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-------RVELLYSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc-------cceeehhhhhhHHHhhccCcEEEEe
Confidence            478999999997 66666666554 46999999999999888876643       3444444433322112467999987


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEE
Q 026688          140 AAIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      -.+.--+.|.-+-+++.+.+|||..++=
T Consensus       103 alipG~~aP~lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1         103 VLVPGRRAPILVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             eecCCcccCeeecHHHHhhcCCCcEEEE
Confidence            6654444555556789999999887763

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.0012  Score=45.20  Aligned_cols=101  Identities=13%  Similarity=0.074  Sum_probs=65.6

Q ss_pred             HHHhhcCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---cccc-
Q 026688           52 LMKGYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-  125 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~-  125 (235)
                      .+.+..+..++.+||-.|+ | .|..+..+++.. .+++++++.+++-.+.+++.    +   .  -.++..   |+.+ 
T Consensus        19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~----G---a--~~vi~~~~~~~~~~   88 (174)
T d1yb5a2          19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN----G---A--HEVFNHREVNYIDK   88 (174)
T ss_dssp             HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T---C--SEEEETTSTTHHHH
T ss_pred             HHHHHhCCCCCCEEEEEecccccccccccccccc-Cccccccccccccccccccc----C---c--ccccccccccHHHH
Confidence            3344556667899999996 3 477777777764 46899999888877777652    1   1  112211   1111 


Q ss_pred             C--CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          126 L--PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       126 ~--~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      .  ......+|+|+....       ...+....++++|+|.++...
T Consensus        89 i~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          89 IKKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             HHHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             hhhhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEEe
Confidence            0  123467999995322       245788899999999999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.39  E-value=0.0017  Score=44.55  Aligned_cols=106  Identities=10%  Similarity=-0.018  Sum_probs=64.1

Q ss_pred             HHHhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----
Q 026688           52 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----  126 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----  126 (235)
                      .+.+....+++.+||-+|||. |..+..+++..-...|+++|.++.-++.+++.=         ...++...-.+.    
T Consensus        18 a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lG---------a~~~i~~~~~d~~~~~   88 (174)
T d1p0fa2          18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG---------ATECLNPKDYDKPIYE   88 (174)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHH
T ss_pred             HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcC---------CcEEEcCCCchhHHHH
Confidence            344555667799999999987 555555665533358999999999999998631         122222111110    


Q ss_pred             ---CCCCCceeEEEecccccccCChHHHHHHHHHhcc-CCcEEEEEEecc
Q 026688          127 ---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLR-PGGVFVGTTYIV  172 (235)
Q Consensus       127 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~-pgG~li~~~~~~  172 (235)
                         ....+.+|.++-.     .... ..+......++ ++|.+++.....
T Consensus        89 ~~~~~~~~G~d~vid~-----~g~~-~~~~~~~~~~~~~~G~~v~vG~~~  132 (174)
T d1p0fa2          89 VICEKTNGGVDYAVEC-----AGRI-ETMMNALQSTYCGSGVTVVLGLAS  132 (174)
T ss_dssp             HHHHHTTSCBSEEEEC-----SCCH-HHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             HHHHhcCCCCcEEEEc-----CCCc-hHHHHHHHHHHHhcCceEEEEEec
Confidence               0123468888842     2222 44555666555 468888866543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.38  E-value=0.0011  Score=45.08  Aligned_cols=99  Identities=16%  Similarity=0.105  Sum_probs=62.3

Q ss_pred             hcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCC
Q 026688           56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FAS  130 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~  130 (235)
                      .....++.+||-+|+|. |..+..+++.. ..+|+++|.++.-++.+++.-         -..++..+-.+..    ...
T Consensus        22 ~~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~G---------a~~~i~~~~~~~~~~~~~~~   91 (166)
T d1llua2          22 QTNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLG---------ASLTVNARQEDPVEAIQRDI   91 (166)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTT---------CSEEEETTTSCHHHHHHHHH
T ss_pred             HhCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccC---------ccccccccchhHHHHHHHhh
Confidence            34566789999999986 77777777765 369999999999988887631         1122222211110    001


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      ..+|.++...      .....+....+.|+|+|++++...
T Consensus        92 ~g~~~~i~~~------~~~~~~~~~~~~l~~~G~iv~~G~  125 (166)
T d1llua2          92 GGAHGVLVTA------VSNSAFGQAIGMARRGGTIALVGL  125 (166)
T ss_dssp             SSEEEEEECC------SCHHHHHHHHTTEEEEEEEEECCC
T ss_pred             cCCccccccc------ccchHHHHHHHHhcCCcEEEEEEe
Confidence            2344443211      113457889999999999988653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.00026  Score=48.55  Aligned_cols=101  Identities=10%  Similarity=0.059  Sum_probs=64.1

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCcee
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSID  134 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D  134 (235)
                      ....++.+||-+|+|. |..+..+++.. .++++++|.++.-++.+++.=        ....+...+..+. ....+.+|
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lG--------a~~~i~~~~~~~~~~~~~~~~d   93 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMG--------ADHYIATLEEGDWGEKYFDTFD   93 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHT--------CSEEEEGGGTSCHHHHSCSCEE
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccC--------CcEEeeccchHHHHHhhhcccc
Confidence            4556789999999984 77777776653 459999999999888887641        1111111111111 11235799


Q ss_pred             EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      .++......+-    ..+....++++|+|++++...
T Consensus        94 ~vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          94 LIVVCASSLTD----IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             EEEECCSCSTT----CCTTTGGGGEEEEEEEEECCC
T ss_pred             eEEEEecCCcc----chHHHHHHHhhccceEEEecc
Confidence            88864322211    114567899999999988754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.34  E-value=0.0011  Score=45.28  Aligned_cols=91  Identities=14%  Similarity=0.195  Sum_probs=60.5

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++|+-||||. | .++..+.+.++..+|+++|.+++.++.+++.-         .+.....+.....  ....|+|++..
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~---------~~~~~~~~~~~~~--~~~~dlIila~   70 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG---------IIDEGTTSIAKVE--DFSPDFVMLSS   70 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT---------SCSEEESCGGGGG--GTCCSEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh---------cchhhhhhhhhhh--ccccccccccC
Confidence            3688999996 4 56667777777779999999999999888731         2222233332221  34679998543


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEE
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      -..   ....++.++.+.++++..++-
T Consensus        71 p~~---~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          71 PVR---TFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             CHH---HHHHHHHHHHHHSCTTCEEEE
T ss_pred             Cch---hhhhhhhhhhccccccccccc
Confidence            322   124678888999988765543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.30  E-value=0.00088  Score=45.77  Aligned_cols=102  Identities=14%  Similarity=0.126  Sum_probs=65.7

Q ss_pred             hhcCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC------
Q 026688           55 GYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------  126 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------  126 (235)
                      ...+..++.+||-+|| | .|..+..+++......|+++|.++.-++.+++.=        .. .++..+-.+.      
T Consensus        21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~G--------a~-~~i~~~~~~~~~~~~~   91 (170)
T d1jvba2          21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAG--------AD-YVINASMQDPLAEIRR   91 (170)
T ss_dssp             HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHT--------CS-EEEETTTSCHHHHHHH
T ss_pred             HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcC--------Cc-eeeccCCcCHHHHHHH
Confidence            3456677899999997 4 3566666666543468999999998888887641        11 1222221111      


Q ss_pred             CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ....+.+|+|+...      .....++.+.++++|||.+++....
T Consensus        92 ~~~~~~~d~vid~~------g~~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2          92 ITESKGVDAVIDLN------NSEKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             HTTTSCEEEEEESC------CCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             Hhhcccchhhhccc------ccchHHHhhhhhcccCCEEEEeccc
Confidence            01235699998532      2235577889999999999887543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.28  E-value=0.00034  Score=52.83  Aligned_cols=62  Identities=11%  Similarity=0.029  Sum_probs=54.2

Q ss_pred             CCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh
Q 026688           43 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  107 (235)
Q Consensus        43 ~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~  107 (235)
                      .+-+..++++++..... ++..|||.-||+|..+.+....+.  ..+|+|++++.++.|++++..
T Consensus       233 t~kP~~L~~rlI~~~s~-~gdiVlDpF~GSGTT~~AA~~lgR--~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         233 ARFPAKLPEFFIRMLTE-PDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             SCCCTHHHHHHHHHHCC-TTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred             CcCchHHHHHhhhhccc-CCCEEEecCCCCcHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHHHh
Confidence            45577889999887764 579999999999999999999877  999999999999999998764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0038  Score=47.34  Aligned_cols=140  Identities=13%  Similarity=0.122  Sum_probs=83.1

Q ss_pred             CCeEEEecCCCchHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---CCCCceeEEE
Q 026688           62 GGNIIDASCGSGLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~i~  137 (235)
                      +.+|+|+-||.|.++..+.+.+-.. .+.++|+++..++..+.+.        +...+.+.|+.+..   ++....|+++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dll~   73 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC--------CCCCcccCchhhCCHhHcCCCCccEEE
Confidence            5789999999999999887776433 3679999999888877653        24556777887653   2224689999


Q ss_pred             ecccccccC---------Ch-HHHHHHHHHhc-----cCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHH
Q 026688          138 AGAAIHCWS---------SP-STGVAEISRVL-----RPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER  202 (235)
Q Consensus       138 ~~~~l~~~~---------~~-~~~l~~~~~~L-----~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (235)
                      ...-+..++         +. ..++.++.+++     +|.  +++.+.... .   ..                 .-..+
T Consensus        74 ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~-l---~~-----------------~~~~~  130 (343)
T d1g55a_          74 MSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKG-F---EV-----------------SSTRD  130 (343)
T ss_dssp             ECCC------------------CHHHHHHHHGGGCSSCCS--EEEEEEETT-G---GG-----------------SHHHH
T ss_pred             eecccccccccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCC-c---cc-----------------chhhH
Confidence            765554442         12 13334444443     463  333343321 0   00                 01235


Q ss_pred             HHHHHHHHcCCceeEEE---------eeCcEEEEEEecC
Q 026688          203 EIEDLCRACGLVDFKCT---------RNRGFVMFTATKP  232 (235)
Q Consensus       203 ~~~~~l~~~Gf~~~~~~---------~~~~~~~~~~~k~  232 (235)
                      .+.+.|++.|+.+....         .....+++++.|.
T Consensus       131 ~i~~~l~~~GY~v~~~vlna~dyGvPQ~R~Rvfivg~r~  169 (343)
T d1g55a_         131 LLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQ  169 (343)
T ss_dssp             HHHHHHHHTTEEEEEEEECGGGGTCSCCCCEEEEEEEES
T ss_pred             HHHhhhhccccccceeeeeccccCCcccceeEEEEEEeC
Confidence            67788899999865443         2224567777654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.04  E-value=0.0013  Score=48.56  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh
Q 026688           44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  107 (235)
Q Consensus        44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~  107 (235)
                      +-+..+.+.+++... .++..|||.-||+|..+.+..+.+.  +++|+|+++...+.|++++..
T Consensus       191 ~kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR--~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         191 QKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHH
Confidence            457788888888775 4588999999999999999999887  999999999999999999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.73  E-value=0.03  Score=37.97  Aligned_cols=104  Identities=13%  Similarity=0.058  Sum_probs=63.4

Q ss_pred             HHHhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-cccccC---
Q 026688           52 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRL---  126 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~---  126 (235)
                      .+....+.+++.+||-+|+|. |.....+++..-...|+++|.++.-++.+++.-.         ..++. .+..+.   
T Consensus        19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga---------~~~i~~~~~~~~~~~   89 (176)
T d2jhfa2          19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA---------TECVNPQDYKKPIQE   89 (176)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------SEEECGGGCSSCHHH
T ss_pred             HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC---------eeEEecCCchhHHHH
Confidence            444556677799999999975 4455555555545699999999998888876421         11221 111111   


Q ss_pred             ---CCCCCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          127 ---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       127 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                         ....+.+|+|+-....      ...++.+...++++ |.+++...
T Consensus        90 ~~~~~~~~G~D~vid~~G~------~~~~~~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2          90 VLTEMSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             HHHHHTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             HHHHHhcCCCCEEEecCCc------hhHHHHHHHHHhcCCcceEEecC
Confidence               0123578998843322      24466777788886 55555443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.60  E-value=0.031  Score=37.76  Aligned_cols=104  Identities=14%  Similarity=0.066  Sum_probs=61.1

Q ss_pred             HHHhhcCCCCCCeEEEecCCCc-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---
Q 026688           52 LMKGYLKPVLGGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  127 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---  127 (235)
                      .+.+..+.+++.+||-+|+|.+ ..+..+++..-...|+++|.+++-++.+++.=         -..++..+-.+..   
T Consensus        19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~G---------Ad~~in~~~~~~~~~~   89 (175)
T d1cdoa2          19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG---------ATDFVNPNDHSEPISQ   89 (175)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT---------CCEEECGGGCSSCHHH
T ss_pred             HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcC---------CcEEEcCCCcchhHHH
Confidence            3445556777899999999884 44444555443458999999999888887631         1222222111110   


Q ss_pred             ----CCCCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688          128 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  170 (235)
Q Consensus       128 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~  170 (235)
                          .....+|+++-.-.      ....+..+..++++| |.+++...
T Consensus        90 ~~~~~~~~G~d~vid~~G------~~~~~~~a~~~~~~g~~~~~~~g~  131 (175)
T d1cdoa2          90 VLSKMTNGGVDFSLECVG------NVGVMRNALESCLKGWGVSVLVGW  131 (175)
T ss_dssp             HHHHHHTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HHHhhccCCcceeeeecC------CHHHHHHHHHHhhCCCcceeEEEe
Confidence                11346888884222      234466777777666 44444433

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.52  E-value=0.014  Score=39.32  Aligned_cols=87  Identities=10%  Similarity=0.074  Sum_probs=56.1

Q ss_pred             CeEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           63 GNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        63 ~~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      .+|.-||+|.  +.++..+.+.+.  +|+++|.+++.++.+++.-         .+.....+.+.    -...|+|+..-
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~---------~~~~~~~~~~~----~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQ---------LVDEAGQDLSL----LQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT---------SCSEEESCGGG----GTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhh---------ccceeeeeccc----ccccccccccC
Confidence            3678889985  356667777776  8999999998888776521         12222223222    24679988533


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEE
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                      -..   ..+.+++++...++++..++-
T Consensus        66 p~~---~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          66 PIQ---LILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             CHH---HHHHHHHHHGGGSCTTCEEEE
T ss_pred             cHh---hhhhhhhhhhhhcccccceee
Confidence            211   235788899888888775543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.51  E-value=0.018  Score=39.05  Aligned_cols=104  Identities=13%  Similarity=0.010  Sum_probs=65.1

Q ss_pred             HHHhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---
Q 026688           52 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  127 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---  127 (235)
                      .+.+..+.+++.+||-.|||. |.++..+++..-...|+++|.++.-++.+++.=.         ..++..+-....   
T Consensus        19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa---------~~~i~~~~~~~~~~~   89 (176)
T d2fzwa2          19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA---------TECINPQDFSKPIQE   89 (176)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC---------SEEECGGGCSSCHHH
T ss_pred             HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC---------cEEEeCCchhhHHHH
Confidence            344555667799999999974 5555566665433589999999988888876421         112211111100   


Q ss_pred             ----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                          .....+|+|+-.-.      ....++.+..++++||.+++...
T Consensus        90 ~~~~~~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v~~  130 (176)
T d2fzwa2          90 VLIEMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVVG  130 (176)
T ss_dssp             HHHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred             HHHHHcCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEEEe
Confidence                11356899984322      23567889999999987766543

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.45  E-value=0.0077  Score=43.50  Aligned_cols=112  Identities=17%  Similarity=0.078  Sum_probs=73.4

Q ss_pred             hcCCCCCCeEEEecCCCchHHHHHHHcC----------------------------------------CCceEEEEeCCH
Q 026688           56 YLKPVLGGNIIDASCGSGLFSRIFAKSG----------------------------------------LFSLVVALDYSE   95 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~----------------------------------------~~~~v~~~D~s~   95 (235)
                      ......+..++|.-||+|.+.+..+-..                                        ....++|.|+++
T Consensus        45 l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~  124 (249)
T d1o9ga_          45 RLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYL  124 (249)
T ss_dssp             TSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             hhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCH
Confidence            3444556789999999999988665421                                        013567999999


Q ss_pred             HHHHHHH---HHhhhcCCCCCCCeeEEecccccCC-----CCCCceeEEEecccccc-cC---C-h----HHHHHHHHHh
Q 026688           96 NMLKQCY---EFVQQESNFPKENFLLVRADISRLP-----FASSSIDAVHAGAAIHC-WS---S-P----STGVAEISRV  158 (235)
Q Consensus        96 ~~~~~a~---~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~i~~~~~l~~-~~---~-~----~~~l~~~~~~  158 (235)
                      .+++.|+   +++...++  ...+.+...|+.+..     .+...+++|+++--... +.   + .    .++...+.++
T Consensus       125 ~ai~~A~~~r~n~~~Agl--~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~  202 (249)
T d1o9ga_         125 EAAQAARRLRERLTAEGG--ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASA  202 (249)
T ss_dssp             HHHHHHHHHHHHHHHTTS--SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC--CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHcc
Confidence            9999884   46666655  457889999986532     12356799999854322 11   1 1    3556667888


Q ss_pred             ccCCcEEEEEE
Q 026688          159 LRPGGVFVGTT  169 (235)
Q Consensus       159 L~pgG~li~~~  169 (235)
                      ++....++++.
T Consensus       203 ~p~~s~~~it~  213 (249)
T d1o9ga_         203 LPAHAVIAVTD  213 (249)
T ss_dssp             SCTTCEEEEEE
T ss_pred             CCCCcEEEEeC
Confidence            86555555543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.44  E-value=0.015  Score=39.62  Aligned_cols=105  Identities=10%  Similarity=-0.001  Sum_probs=65.1

Q ss_pred             HHhhcCCCCCCeEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--CCC
Q 026688           53 MKGYLKPVLGGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LPF  128 (235)
Q Consensus        53 i~~~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~~  128 (235)
                      +...-...++.+||--|++.  |..+..+++.. .++|+++.-+++-.+.+++.-...      -+.. ..+..+  ...
T Consensus        23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~------vi~~-~~~~~~~~~~~   94 (176)
T d1xa0a2          23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKE------VLAR-EDVMAERIRPL   94 (176)
T ss_dssp             HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSE------EEEC-C---------C
T ss_pred             HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccce------eeec-chhHHHHHHHh
Confidence            33334445578899998644  67777777664 569999999888888887632111      1111 111111  112


Q ss_pred             CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      ..+.+|+|+-.-.       ...+....++|+|||+++......
T Consensus        95 ~~~gvD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~~~  131 (176)
T d1xa0a2          95 DKQRWAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGLTG  131 (176)
T ss_dssp             CSCCEEEEEECST-------TTTHHHHHHTEEEEEEEEECSCCS
T ss_pred             hccCcCEEEEcCC-------chhHHHHHHHhCCCceEEEeeccc
Confidence            3467998884322       234889999999999999877654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.44  E-value=0.033  Score=37.98  Aligned_cols=102  Identities=9%  Similarity=-0.090  Sum_probs=67.3

Q ss_pred             HHHHhhcCCCCCCeEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--
Q 026688           51 ELMKGYLKPVLGGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--  126 (235)
Q Consensus        51 ~~i~~~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--  126 (235)
                      ..+.+..+..++.+||-.|++.  |..+..+++.. .++|++++-+++-.+.+++.-         .-.++..+-.+.  
T Consensus        19 ~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~G---------a~~vi~~~~~~~~~   88 (182)
T d1v3va2          19 FGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIG---------FDAAFNYKTVNSLE   88 (182)
T ss_dssp             HHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT---------CSEEEETTSCSCHH
T ss_pred             HHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhh---------hhhhcccccccHHH
Confidence            3455566667789999888865  56667777765 469999999988777776631         111222221111  


Q ss_pred             ----CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          127 ----PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       127 ----~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                          ......+|+|+-     ...  .+.++.+.++|+|+|.++...
T Consensus        89 ~~~~~~~~~Gvd~v~D-----~vG--~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          89 EALKKASPDGYDCYFD-----NVG--GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             HHHHHHCTTCEEEEEE-----SSC--HHHHHHHGGGEEEEEEEEECC
T ss_pred             HHHHHhhcCCCceeEE-----ecC--chhhhhhhhhccCCCeEEeec
Confidence                012356999883     222  346889999999999999854

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.41  E-value=0.012  Score=40.19  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=63.6

Q ss_pred             HHHhhcCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--
Q 026688           52 LMKGYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  127 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--  127 (235)
                      .+.+..+..++.+||-.|+ | .|..+..+++.. .+++++++-+++-.+.+++.    +   . . .++...-.+..  
T Consensus        16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~----G---a-~-~vi~~~~~~~~~~   85 (183)
T d1pqwa_          16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRL----G---V-E-YVGDSRSVDFADE   85 (183)
T ss_dssp             HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTT----C---C-S-EEEETTCSTHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccc----c---c-c-ccccCCccCHHHH
Confidence            3445556667889999774 3 477777777664 35888888888777766642    1   1 1 22221111110  


Q ss_pred             ----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          128 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       128 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                          .....+|+|+....       ...++.+.++|+++|+++...
T Consensus        86 v~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          86 ILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             HHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred             HHHHhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEEc
Confidence                12367999996433       235788899999999998753

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.021  Score=38.77  Aligned_cols=102  Identities=10%  Similarity=0.029  Sum_probs=65.3

Q ss_pred             HHHhhcCCCCCCeEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--
Q 026688           52 LMKGYLKPVLGGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  127 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--  127 (235)
                      .+.+..+..++.+||-.|+|.  |..+..+++.. .++|++++.+++-.+.+++.=.        . .++...-.+..  
T Consensus        19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa--------~-~vi~~~~~d~~~~   88 (179)
T d1qora2          19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGA--------W-QVINYREEDLVER   88 (179)
T ss_dssp             HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTC--------S-EEEETTTSCHHHH
T ss_pred             HHHHHhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCC--------e-EEEECCCCCHHHH
Confidence            344445566788999997764  66777777763 4699999999998888876411        1 12211111110  


Q ss_pred             ----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          128 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                          .....+|+|+....-       ..+....+.++|+|.+++...
T Consensus        89 v~~~t~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          89 LKEITGGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             HHHHTTTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHhCCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeeccc
Confidence                124578988853322       246789999999998876543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.0046  Score=42.13  Aligned_cols=97  Identities=18%  Similarity=0.098  Sum_probs=60.0

Q ss_pred             hcCCCCCCeEEEecC-CC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCce
Q 026688           56 YLKPVLGGNIIDASC-GS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  133 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (235)
                      ..+..++.+||-.|+ |. |.....+++.. .++|++++.++.-++.+++.    +   . ...+-..+....-.....+
T Consensus        22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~l----G---a-~~~i~~~~~~~~~~~~~g~   92 (171)
T d1iz0a2          22 RAQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL----G---A-EEAATYAEVPERAKAWGGL   92 (171)
T ss_dssp             HTTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT----T---C-SEEEEGGGHHHHHHHTTSE
T ss_pred             HhCCCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccc----c---c-ceeeehhhhhhhhhccccc
Confidence            355667899999885 43 67777777764 46999999998877777652    1   1 1111111111111123569


Q ss_pred             eEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       134 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      |+|+-...        ..+....++|+|+|+++...
T Consensus        93 D~v~d~~G--------~~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          93 DLVLEVRG--------KEVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EEEEECSC--------TTHHHHHTTEEEEEEEEEC-
T ss_pred             cccccccc--------hhHHHHHHHHhcCCcEEEEe
Confidence            99885221        12577889999999998753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.28  E-value=0.018  Score=38.65  Aligned_cols=99  Identities=20%  Similarity=0.189  Sum_probs=60.4

Q ss_pred             cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---cccc-CCCCCC
Q 026688           57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-LPFASS  131 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~  131 (235)
                      .+..++.+||-.|+|+ |.....+++.. ..+|+++|.++.-++.+++.-        .. .+...   |... ......
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~G--------a~-~~~~~~~~~~~~~~~~~~~   92 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELG--------AD-LVVNPLKEDAAKFMKEKVG   92 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTT--------CS-EEECTTTSCHHHHHHHHHS
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhcC--------cc-eecccccchhhhhcccccC
Confidence            4566789999999987 55555555553 458999999999888887631        11 11111   1110 000012


Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      .+|.++...+      ....+....+.++|+|.+++....
T Consensus        93 ~~~~~v~~~~------~~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2          93 GVHAAVVTAV------SKPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             SEEEEEESSC------CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCceEEeecC------CHHHHHHHHHHhccCCceEecccc
Confidence            3444443211      235688999999999999986543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.26  E-value=0.0022  Score=44.01  Aligned_cols=105  Identities=17%  Similarity=0.095  Sum_probs=62.5

Q ss_pred             CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCC---CeeEEecccccCC---------
Q 026688           61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE---NFLLVRADISRLP---------  127 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~---~~~~~~~d~~~~~---------  127 (235)
                      ++.+||-+|+|. |..+...+... .+.|+++|.++..+++.+......-.....   ..........+..         
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            478999999997 55555555543 569999999999988888754321100000   0000000000000         


Q ss_pred             ---CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEE
Q 026688          128 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       128 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                         -.-...|+|+..-.+.--+.|.-+-+++.+.+|||..++
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence               001367999987666554555555678999999998776

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.17  E-value=0.13  Score=38.31  Aligned_cols=72  Identities=18%  Similarity=0.185  Sum_probs=52.8

Q ss_pred             CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCCceeEEEec
Q 026688           61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAG  139 (235)
Q Consensus        61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~  139 (235)
                      .+.+|||+-||.|.++..+.+.+. -.+.++|+++..++..+.+....          .+.|+.++.. .-..+|+++..
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~-~~v~a~e~d~~a~~~~~~N~~~~----------~~~Di~~~~~~~~~~~Dll~gg   78 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK----------PEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC----------CBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHCCCC----------CcCchhcCchhhcceeeeeecc
Confidence            368999999999999999988874 35678999999999888775321          2467766532 12468999976


Q ss_pred             cccc
Q 026688          140 AAIH  143 (235)
Q Consensus       140 ~~l~  143 (235)
                      .-+.
T Consensus        79 pPCq   82 (327)
T d2c7pa1          79 FPCQ   82 (327)
T ss_dssp             CCCT
T ss_pred             cccc
Confidence            5443

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.08  E-value=0.16  Score=37.44  Aligned_cols=73  Identities=23%  Similarity=0.408  Sum_probs=53.5

Q ss_pred             CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCCceeEEEeccc
Q 026688           63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAA  141 (235)
Q Consensus        63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~~~  141 (235)
                      .+|||+-||.|.++.-+.+.+. ..+.++|+++...+..+.+..         -.+...|+.++.. .-...|+++...-
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~-~~~~a~e~d~~a~~~~~~N~~---------~~~~~~Di~~~~~~~~~~~dll~~g~P   70 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHS---------AKLIKGDISKISSDEFPKCDGIIGGPP   70 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTC-EEEEEEECCHHHHHHHHHHCC---------SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHCC---------CCCccCChhhCCHhHcccccEEeeccc
Confidence            3799999999999998888775 356799999988887776532         3456788887642 2246899997655


Q ss_pred             cccc
Q 026688          142 IHCW  145 (235)
Q Consensus       142 l~~~  145 (235)
                      +..+
T Consensus        71 Cq~f   74 (324)
T d1dcta_          71 CQSW   74 (324)
T ss_dssp             CTTT
T ss_pred             cccc
Confidence            5443

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.08  E-value=0.028  Score=43.04  Aligned_cols=50  Identities=8%  Similarity=-0.023  Sum_probs=37.0

Q ss_pred             cCCCCCCeEEEecCCCchHHHHHHHcC-------CCceEEEEeCCHHHHHHHHHHhh
Q 026688           57 LKPVLGGNIIDASCGSGLFSRIFAKSG-------LFSLVVALDYSENMLKQCYEFVQ  106 (235)
Q Consensus        57 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-------~~~~v~~~D~s~~~~~~a~~~~~  106 (235)
                      +......+|+|+|+|.|.++..+.+..       ...+++.+|.|+...+.-++.+.
T Consensus        75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            344445789999999999988776542       23468999999987776666654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.088  Score=38.00  Aligned_cols=79  Identities=15%  Similarity=0.171  Sum_probs=56.7

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++.+|--|++.|   ..+..|++.+.  .|+.++.+++.++.+.+.+...+.  ..++.++.+|+.+..          -
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~v~~~~~   85 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGY--PGTLIPYRCDLSNEEDILSMFSAIRS   85 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--SSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEEEccCCCHHHHHHHHHHHHH
Confidence            678999998876   34556666665  899999999998888887776532  346788899997632          0


Q ss_pred             CCCceeEEEecccccc
Q 026688          129 ASSSIDAVHAGAAIHC  144 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~  144 (235)
                      .-+..|+++.+....+
T Consensus        86 ~~g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          86 QHSGVDICINNAGLAR  101 (257)
T ss_dssp             HHCCCSEEEECCCCCC
T ss_pred             hcCCCCEEEecccccC
Confidence            1257899997765543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.24  Score=35.27  Aligned_cols=78  Identities=17%  Similarity=0.116  Sum_probs=57.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++.+|--|++.|   .++..+++++.  +|..+|.+++-++...+.+...    ..++.++.+|+.+..          -
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~i~~   80 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL----GAKVHTFVVDCSNREDIYSSAKKVKA   80 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            677888888876   45667777776  9999999999888888877654    347888999997642          1


Q ss_pred             CCCceeEEEeccccccc
Q 026688          129 ASSSIDAVHAGAAIHCW  145 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~  145 (235)
                      ..+..|+++.+......
T Consensus        81 ~~g~idilinnag~~~~   97 (244)
T d1yb1a_          81 EIGDVSILVNNAGVVYT   97 (244)
T ss_dssp             HTCCCSEEEECCCCCCC
T ss_pred             HcCCCceeEeecccccc
Confidence            23578999987665543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.21  Score=36.23  Aligned_cols=104  Identities=17%  Similarity=0.161  Sum_probs=68.1

Q ss_pred             CCeEEEe-cCCCch---HHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------C-
Q 026688           62 GGNIIDA-SCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------F-  128 (235)
Q Consensus        62 ~~~vLdi-G~G~G~---~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~-  128 (235)
                      +++|.-| |++.|-   .+..|++.+ ...|+.++.+++-++.+.+.+...    ..++.++.+|+.+..        . 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dvs~~~sv~~~~~~~~   76 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQQLQAE----GLSPRFHQLDIDDLQSIRALRDFLR   76 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEEecCCHHHHHHHHHHHH
Confidence            5677555 554442   233455442 248999999999999888888765    346888999997642        0 


Q ss_pred             -CCCceeEEEecccccccCC---h----------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          129 -ASSSIDAVHAGAAIHCWSS---P----------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       129 -~~~~~D~i~~~~~l~~~~~---~----------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       .-+..|++|.+..+.+...   .                -.+.+.+...|+++|.++....
T Consensus        77 ~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          77 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence             1257999998876543211   0                1346677888888998776553

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.00  E-value=0.13  Score=34.40  Aligned_cols=96  Identities=13%  Similarity=0.081  Sum_probs=60.8

Q ss_pred             CCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--C-CCCCCceeE
Q 026688           61 LGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--L-PFASSSIDA  135 (235)
Q Consensus        61 ~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~~~~~D~  135 (235)
                      ++.+||--|+  |-|..+..+++.. .++|+++.-+++-.+.+++.-.        ...+...|...  . ....+.+|+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGa--------d~vi~~~~~~~~~~~~~~~~gvd~   93 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGA--------SEVISREDVYDGTLKALSKQQWQG   93 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTC--------SEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhcc--------cceEeccchhchhhhcccCCCceE
Confidence            3557887664  3467777887764 4699999999888777766421        11122222211  1 122457999


Q ss_pred             EEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                      |+-     .+.  ...+.+..++|+|+|+++......
T Consensus        94 vid-----~vg--g~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          94 AVD-----PVG--GKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             EEE-----SCC--THHHHHHHTTEEEEEEEEECCCSS
T ss_pred             EEe-----cCc--HHHHHHHHHHhccCceEEEeeccC
Confidence            873     222  246889999999999998865443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.99  E-value=0.41  Score=34.16  Aligned_cols=104  Identities=15%  Similarity=0.126  Sum_probs=66.5

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.+....   ..++.++.+|+.+..     +     
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY---GVETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh---CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            678888888776   34556677765  99999999888777666554322   346778889987632     0     


Q ss_pred             CCCceeEEEecccccccCC-----h--------------HHHHHHHHHhccC--CcEEEEEEe
Q 026688          129 ASSSIDAVHAGAAIHCWSS-----P--------------STGVAEISRVLRP--GGVFVGTTY  170 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~-----~--------------~~~l~~~~~~L~p--gG~li~~~~  170 (235)
                      .-+..|+++.+........     .              -.+.+.+.+.++.  +|.++....
T Consensus        80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S  142 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS  142 (251)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccccccc
Confidence            1157999998765433221     1              1345566666643  567666543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.2  Score=35.91  Aligned_cols=83  Identities=14%  Similarity=0.213  Sum_probs=57.4

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++.+|--|++.|   ..+..+++.+.  +|..+|.+++.++.+.+.+.....  ..++.++.+|+.+..          -
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFE--PQKTLFIQCDVADQQQLRDTFRKVVD   78 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSC--GGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcC--CCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            567788787765   33445666665  999999999988888777654321  346888899997632          0


Q ss_pred             CCCceeEEEecccccccCCh
Q 026688          129 ASSSIDAVHAGAAIHCWSSP  148 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~~~  148 (235)
                      .-+..|+++.+.......+.
T Consensus        79 ~~G~iDilVnnAg~~~~~~~   98 (254)
T d2gdza1          79 HFGRLDILVNNAGVNNEKNW   98 (254)
T ss_dssp             HHSCCCEEEECCCCCCSSSH
T ss_pred             HcCCcCeecccccccccccc
Confidence            12579999988776655543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.63  E-value=0.62  Score=31.41  Aligned_cols=102  Identities=7%  Similarity=-0.042  Sum_probs=60.1

Q ss_pred             HHhhcCCCCC--CeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-
Q 026688           53 MKGYLKPVLG--GNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  127 (235)
Q Consensus        53 i~~~~~~~~~--~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-  127 (235)
                      +.+..+.+++  .+||-.|+  |.|..+..+++..-...|++++.+++......+.+..        ..++...-.+.. 
T Consensus        20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga--------d~vi~~~~~~~~~   91 (187)
T d1vj1a2          20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF--------DAAVNYKTGNVAE   91 (187)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC--------SEEEETTSSCHHH
T ss_pred             HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc--------eEEeeccchhHHH
Confidence            4444444444  77998773  5689999999875333677777776655544433211        112222111110 


Q ss_pred             ----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          128 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       128 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                          ...+.+|+|+-.-     .  ...+....++|+|+|+++..-
T Consensus        92 ~~~~~~~~GvDvv~D~v-----G--g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2          92 QLREACPGGVDVYFDNV-----G--GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             HHHHHCTTCEEEEEESS-----C--HHHHHHHHTTEEEEEEEEEC-
T ss_pred             HHHHHhccCceEEEecC-----C--chhHHHHhhhccccccEEEec
Confidence                1235699998322     1  346889999999999998743

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.56  E-value=0.63  Score=33.24  Aligned_cols=77  Identities=16%  Similarity=0.170  Sum_probs=55.8

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----------
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----------  127 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----------  127 (235)
                      ++++|-.|+..|   ..+..+++.+.  +|..++.+++-++.+.+.+...    ...+.++.+|+.+..           
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~----~~~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREK----GLNVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEEeecCCHHHHHHHHHHHHH
Confidence            688999998776   44556677776  9999999998888888877665    346778889997632           


Q ss_pred             CCCCceeEEEecccccc
Q 026688          128 FASSSIDAVHAGAAIHC  144 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~  144 (235)
                      ...+..|+++.+....+
T Consensus        80 ~~~g~idilinnag~~~   96 (258)
T d1ae1a_          80 VFDGKLNILVNNAGVVI   96 (258)
T ss_dssp             HTTSCCCEEEECCCCCC
T ss_pred             HhCCCcEEEeccccccc
Confidence            11256888887655443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.31  E-value=0.2  Score=31.82  Aligned_cols=86  Identities=15%  Similarity=0.150  Sum_probs=52.1

Q ss_pred             CeEEEecCCC-chHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeEE
Q 026688           63 GNIIDASCGS-GLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAV  136 (235)
Q Consensus        63 ~~vLdiG~G~-G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~i  136 (235)
                      ++|+-+|+|. |.... .|.+.+.  .|+++|.+++.++.+....         ...++.+|..+..    ..-...|.+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~~---------~~~vi~Gd~~~~~~l~~~~i~~a~~v   69 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAEI---------DALVINGDCTKIKTLEDAGIEDADMY   69 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC---------SSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC--CcceecCChhhhhhhhhhh---------hhhhccCcccchhhhhhcChhhhhhh
Confidence            3677788754 33222 3334444  8999999999888776542         4567888887632    223567888


Q ss_pred             EecccccccCChH--HHHHHHHHhccCCcE
Q 026688          137 HAGAAIHCWSSPS--TGVAEISRVLRPGGV  164 (235)
Q Consensus       137 ~~~~~l~~~~~~~--~~l~~~~~~L~pgG~  164 (235)
                      ++.     .++.+  .......+.+.+.-.
T Consensus        70 v~~-----t~~d~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          70 IAV-----TGKEEVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             EEC-----CSCHHHHHHHHHHHHHTTCCCE
T ss_pred             ccc-----CCcHHHHHHHHHHHHHcCCceE
Confidence            863     22222  334445566677643

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.25  E-value=0.21  Score=33.49  Aligned_cols=96  Identities=19%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCee----EEecccccCCCCCCceeEE
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL----LVRADISRLPFASSSIDAV  136 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~----~~~~d~~~~~~~~~~~D~i  136 (235)
                      ++|--+|+|. | .++..|++++.  +|+.+|.++.-++..++.-......+.....    ....|..+   .-...|+|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~aD~i   76 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL---AVKDADVI   76 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH---HHTTCSEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh---HhcCCCEE
Confidence            5788899997 3 44556677765  9999999998888776542111000001111    11112111   11467998


Q ss_pred             EecccccccCChHHHHHHHHHhccCCcEEE
Q 026688          137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      ++.---.   ....+++++...++++..++
T Consensus        77 ii~v~~~---~~~~~~~~i~~~l~~~~~iv  103 (184)
T d1bg6a2          77 LIVVPAI---HHASIAANIASYISEGQLII  103 (184)
T ss_dssp             EECSCGG---GHHHHHHHHGGGCCTTCEEE
T ss_pred             EEEEchh---HHHHHHHHhhhccCCCCEEE
Confidence            8642211   23578899999999987655

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.15  E-value=0.47  Score=33.93  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=69.3

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEE-eCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---------
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVAL-DYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------  127 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~-D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------  127 (235)
                      .++++|--|++.|   ..+..|++.+.  +|+.. +.++..++.+.+.+...+    .++.++..|+.+..         
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~~~~~   78 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEVVALFDKA   78 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC----CCceEecCCCCCHHHHHHHHHHH
Confidence            3678888787666   55666777765  77764 567777888887776653    46888999997531         


Q ss_pred             -CCCCceeEEEecccccccCCh-------------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          128 -FASSSIDAVHAGAAIHCWSSP-------------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~~~~~-------------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                       ...+..|+++.+....+..+.                   -...+.+...++.+|.+++...
T Consensus        79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s  141 (259)
T d1ja9a_          79 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  141 (259)
T ss_dssp             HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccc
Confidence             112579999987666544321                   1346677777788777666543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.62  Score=32.97  Aligned_cols=74  Identities=16%  Similarity=0.161  Sum_probs=51.1

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|--|++.|   ..+..+++.+.  +|..+|.+++.++...+.+..       +...+..|+.+..          -
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~   74 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGA-------NGKGLMLNVTDPASIESVLEKIRA   74 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGG-------GEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCC-------CCcEEEEEecCHHHhhhhhhhhhc
Confidence            677777787766   34556666665  899999999888877766532       5667888886532          0


Q ss_pred             CCCceeEEEecccccc
Q 026688          129 ASSSIDAVHAGAAIHC  144 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~  144 (235)
                      .-+..|+++.+....+
T Consensus        75 ~~g~iDilVnnAg~~~   90 (243)
T d1q7ba_          75 EFGEVDILVNNAGITR   90 (243)
T ss_dssp             HTCSCSEEEECCCCCC
T ss_pred             ccCCcceehhhhhhcc
Confidence            1257999997755443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=93.00  E-value=0.12  Score=39.81  Aligned_cols=51  Identities=10%  Similarity=0.015  Sum_probs=41.4

Q ss_pred             CCCCCeEEEecCCCchHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHhhhcC
Q 026688           59 PVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQES  109 (235)
Q Consensus        59 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~  109 (235)
                      ..++..++|+|+..|..+..++...  ...+|+++|+++...+..++++..+.
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            4557899999999999988776643  23589999999999999998877543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.79  Score=30.69  Aligned_cols=93  Identities=14%  Similarity=0.076  Sum_probs=58.8

Q ss_pred             CCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--CCCCCCceeEEE
Q 026688           62 GGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LPFASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~i~  137 (235)
                      +.+||-.|+  |.|..+..+++.. .++|+++.-+++..+.+++.-.         -.++..+-.+  ..+....+|.++
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lGa---------d~vi~~~~~~~~~~l~~~~~~~vv  101 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGA---------SRVLPRDEFAESRPLEKQVWAGAI  101 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTE---------EEEEEGGGSSSCCSSCCCCEEEEE
T ss_pred             CCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhcc---------ccccccccHHHHHHHHhhcCCeeE
Confidence            457776654  3467777777764 5699999999988877765321         1122222111  123345678875


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      -     .+.  ...+....+.|+++|.++.....
T Consensus       102 D-----~Vg--g~~~~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2         102 D-----TVG--DKVLAKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             E-----SSC--HHHHHHHHHTEEEEEEEEECCCT
T ss_pred             E-----Ecc--hHHHHHHHHHhccccceEeeccc
Confidence            2     221  34688999999999999986543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.96  Score=31.93  Aligned_cols=74  Identities=18%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------CCCC
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FASS  131 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~  131 (235)
                      .++++|--|++.|   ..+..+++.+.  +|..+|.+++.++...+.+        .++..++.|+.+..      -.-+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~~~~g   75 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVREC--------PGIEPVCVDLGDWEATERALGSVG   75 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHS--------TTCEEEECCTTCHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhc--------CCCeEEEEeCCCHHHHHHHHHHhC
Confidence            3688998898876   44566677665  9999999998877766543        35677888886531      1236


Q ss_pred             ceeEEEecccccc
Q 026688          132 SIDAVHAGAAIHC  144 (235)
Q Consensus       132 ~~D~i~~~~~l~~  144 (235)
                      ..|+++.+.....
T Consensus        76 ~iDilVnnAg~~~   88 (244)
T d1pr9a_          76 PVDLLVNNAAVAL   88 (244)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CceEEEecccccc
Confidence            7999998765543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.91  E-value=0.69  Score=31.00  Aligned_cols=96  Identities=13%  Similarity=-0.011  Sum_probs=53.4

Q ss_pred             CeEEEecCCC-chHHHHHHHcCCCceEEEE-eCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           63 GNIIDASCGS-GLFSRIFAKSGLFSLVVAL-DYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        63 ~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~-D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      .+|.-||||. |..-....+..++.+++++ |.+++..+...+..   +.  ..... ...|..++- .+...|+|+...
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~---~~--~~~~~-~~~~~~~ll-~~~~iD~v~I~t   74 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATAN---NY--PESTK-IHGSYESLL-EDPEIDALYVPL   74 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT---TC--CTTCE-EESSHHHHH-HCTTCCEEEECC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcc---cc--cccee-ecCcHHHhh-hccccceeeecc
Confidence            3678899995 5544444455566777754 88876555444332   21  11222 234554431 235689988532


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                            .+..-...+..+++.|=.+++.-|.
T Consensus        75 ------p~~~h~~~~~~~l~~g~~v~~EKP~   99 (184)
T d1ydwa1          75 ------PTSLHVEWAIKAAEKGKHILLEKPV   99 (184)
T ss_dssp             ------CGGGHHHHHHHHHTTTCEEEECSSC
T ss_pred             ------cchhhcchhhhhhhccceeeccccc
Confidence                  1223355677777777666665444

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.79  E-value=0.96  Score=32.44  Aligned_cols=103  Identities=13%  Similarity=0.151  Sum_probs=68.6

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCC-HHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  127 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------  127 (235)
                      ++++|--|++.|   ..+..|++.+.  +|+.+|.+ ++.++...+.+...    ..++.+...|+.+..          
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~----g~~~~~~~~D~~~~~~v~~~~~~~~   91 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKN----GSDAACVKANVGVVEDIVRMFEEAV   91 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhh----CCceeeEeCCCCCHHHHHHHHHHHH
Confidence            678888888776   35667777765  89999886 56667666666654    346888889987632          


Q ss_pred             CCCCceeEEEecccccccCCh-------------------HHHHHHHHHhccCCcEEEEEEe
Q 026688          128 FASSSIDAVHAGAAIHCWSSP-------------------STGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~~~~~~-------------------~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      -..+..|+++.+.........                   -...+.+.+.|+.+|.+++...
T Consensus        92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s  153 (272)
T d1g0oa_          92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  153 (272)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence            012578999977654433211                   1346777788888887776544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.69  E-value=0.57  Score=33.32  Aligned_cols=76  Identities=16%  Similarity=0.176  Sum_probs=52.4

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++.+|--|++.|   ..+..|++.+  ++|..+|.+++.++.+.+.+...    ..++.++..|+.+..          -
T Consensus        10 nKvalITGas~GIG~a~a~~la~~G--a~V~~~~r~~~~l~~~~~~l~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~~   83 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSV--SHVICISRTQKSCDSVVDEIKSF----GYESSGYAGDVSKKEEISEVINKILT   83 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTS--SEEEEEESSHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            567777777665   2233444444  49999999999998888887664    346888899997632          1


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      .-+..|+++.+....
T Consensus        84 ~~g~iDilvnnag~~   98 (251)
T d2c07a1          84 EHKNVDILVNNAGIT   98 (251)
T ss_dssp             HCSCCCEEEECCCCC
T ss_pred             hcCCceeeeeccccc
Confidence            126799999875543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.59  E-value=0.97  Score=32.22  Aligned_cols=77  Identities=14%  Similarity=0.125  Sum_probs=54.8

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------C--
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------F--  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~--  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.+...    ..++.++.+|+.+..        .  
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSK----GFKVEASVCDLSSRSERQELMNTVAN   81 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEEeeCCCHHHHHHHHHHHHH
Confidence            678888888766   34556666665  8999999999998888877664    346778889986521        0  


Q ss_pred             -CCCceeEEEecccccc
Q 026688          129 -ASSSIDAVHAGAAIHC  144 (235)
Q Consensus       129 -~~~~~D~i~~~~~l~~  144 (235)
                       .....|+++.+....+
T Consensus        82 ~~~~~idilvnnAG~~~   98 (259)
T d2ae2a_          82 HFHGKLNILVNNAGIVI   98 (259)
T ss_dssp             HTTTCCCEEEECCCCCC
T ss_pred             HhCCCceEEEECCceec
Confidence             1236899998765443

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.52  E-value=0.94  Score=33.66  Aligned_cols=113  Identities=11%  Similarity=0.136  Sum_probs=68.1

Q ss_pred             hcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCC-HHHHHHHHHHhhhcC------------------CCCCCCe
Q 026688           56 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQES------------------NFPKENF  116 (235)
Q Consensus        56 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~------------------~~~~~~~  116 (235)
                      ++...+...|+-+|||.-.....+....+  .+..+|++ |++++.=++.+....                  .....+.
T Consensus        91 Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~--~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y  168 (328)
T d1rjda_          91 FLVANEKVQVVNLGCGSDLRMLPLLQMFP--HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRY  168 (328)
T ss_dssp             HHHHCSSEEEEEETCTTCCTHHHHHHHCT--TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSE
T ss_pred             HHHHCCCcEEEEeCCccchHHHHhhccCC--CcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCe
Confidence            34444567899999999888887876666  45566665 444444333332100                  0012456


Q ss_pred             eEEecccccCC---------CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEec
Q 026688          117 LLVRADISRLP---------FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       117 ~~~~~d~~~~~---------~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      +.+.+|+.+..         +..+..-++++=.++.+++..  .++++.+.+..+. |.+++-++.
T Consensus       169 ~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~-~~~i~YE~i  233 (328)
T d1rjda_         169 KLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH-GLWISYDPI  233 (328)
T ss_dssp             EEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEEC
T ss_pred             EEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC-ceEEEeccC
Confidence            77888887632         222344566666777777644  4778887777754 566666665

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.33  E-value=0.81  Score=32.54  Aligned_cols=100  Identities=18%  Similarity=0.179  Sum_probs=63.6

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++.++...+.+       ..+..++..|+.+..          -
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~~~~~~~~~~~   76 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAEL-------GERSMFVRHDVSSEADWTLVMAAVQR   76 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHH-------CTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-------CCCeEEEEeecCCHHHHHHHHHHHHH
Confidence            678887787766   34556666665  8999999998887776655       235667788886532          0


Q ss_pred             CCCceeEEEecccccccC---C--h--------------HHHHHHHHHhcc-CCcEEEEEEe
Q 026688          129 ASSSIDAVHAGAAIHCWS---S--P--------------STGVAEISRVLR-PGGVFVGTTY  170 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~~~---~--~--------------~~~l~~~~~~L~-pgG~li~~~~  170 (235)
                      .-+..|+++.+.......   +  .              -...+.+.+.++ .+|.++....
T Consensus        77 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS  138 (253)
T d1hxha_          77 RLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMAS  138 (253)
T ss_dssp             HHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             HhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccc
Confidence            125789999876543321   1  1              123556666665 4677776554

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.25  Score=35.43  Aligned_cols=76  Identities=22%  Similarity=0.235  Sum_probs=52.8

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|--|++.|   ..+..|++.+.  .|..+|.+++.++.+.+.+...    ..++.++.+|+.+..          -
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~----g~~~~~~~~Dvs~~~~~~~~~~~~~~   84 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQL----GGQAFACRCDITSEQELSALADFAIS   84 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            677777777665   23345555554  9999999999888888877764    346788899997632          0


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      .-+..|+++.+....
T Consensus        85 ~~g~iDilvnnAG~~   99 (255)
T d1fmca_          85 KLGKVDILVNNAGGG   99 (255)
T ss_dssp             HHSSCCEEEECCCCC
T ss_pred             HcCCCCEeeeCCcCC
Confidence            115799999875543

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=92.12  E-value=0.65  Score=30.61  Aligned_cols=93  Identities=12%  Similarity=-0.082  Sum_probs=54.0

Q ss_pred             CeEEEecCCC-ch-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           63 GNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        63 ~~vLdiG~G~-G~-~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      .+|.-||||. |. ......+..++.++..+|.++...+...+.+..      .   ....|..++-  +..+|+|+...
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~------~---~~~~~~~~ll--~~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRV------S---ATCTDYRDVL--QYGVDAVMIHA   70 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTC------C---CCCSSTTGGG--GGCCSEEEECS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccc------c---cccccHHHhc--ccccceecccc
Confidence            4688899985 42 234455556677888999998877776655421      1   1223444432  23578887532


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  172 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  172 (235)
                            .+..-...+..+++.|=.+++.-|..
T Consensus        71 ------p~~~H~~~~~~al~~gk~V~~EKP~~   96 (167)
T d1xeaa1          71 ------ATDVHSTLAAFFLHLGIPTFVDKPLA   96 (167)
T ss_dssp             ------CGGGHHHHHHHHHHTTCCEEEESCSC
T ss_pred             ------cccccccccccccccccccccCCCCc
Confidence                  12233455666677766666554443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.81  E-value=1.3  Score=31.07  Aligned_cols=102  Identities=24%  Similarity=0.265  Sum_probs=65.9

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C--------
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F--------  128 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~--------  128 (235)
                      .++++|-.|++.|   ..+..|++.+.  .|+.++.+.+.++...+.+       ..++.++.+|+.+.. .        
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dls~~~~i~~~~~~i~   74 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAAL-------EAEAIAVVADVSDPKAVEAVFAEAL   74 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTC-------CSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHc-------CCceEEEEecCCCHHHHHHHHHHHH
Confidence            3678888888776   34556666665  9999999988776554432       346778889987632 0        


Q ss_pred             -CCCceeEEEecccccccCCh-------------------HHHHHHHHHhccCCcEEEEEEec
Q 026688          129 -ASSSIDAVHAGAAIHCWSSP-------------------STGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       129 -~~~~~D~i~~~~~l~~~~~~-------------------~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                       .-+..|+++.+....+....                   -.+.+.+...++.++.+++....
T Consensus        75 ~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~  137 (241)
T d2a4ka1          75 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV  137 (241)
T ss_dssp             HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred             HHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc
Confidence             11579999987655433221                   12356667778887776665443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.79  E-value=1.2  Score=31.59  Aligned_cols=75  Identities=17%  Similarity=0.158  Sum_probs=51.9

Q ss_pred             CeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------CC
Q 026688           63 GNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------FA  129 (235)
Q Consensus        63 ~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~  129 (235)
                      +.+|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.+...    ..++.++.+|+.+..          -.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~----g~~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREA----GVEADGRTCDVRSVPEIEALVAAVVER   76 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            44566676555   23445666665  8999999999999888877664    346888999997632          01


Q ss_pred             CCceeEEEeccccc
Q 026688          130 SSSIDAVHAGAAIH  143 (235)
Q Consensus       130 ~~~~D~i~~~~~l~  143 (235)
                      -+..|+++.+....
T Consensus        77 ~g~iDilVnnAG~~   90 (257)
T d2rhca1          77 YGPVDVLVNNAGRP   90 (257)
T ss_dssp             TCSCSEEEECCCCC
T ss_pred             hCCCCEEEeccccc
Confidence            25789999775543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=91.73  E-value=0.53  Score=31.83  Aligned_cols=105  Identities=10%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             HHHhhcCCCCCCeEEEecCC---CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---cccc
Q 026688           52 LMKGYLKPVLGGNIIDASCG---SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR  125 (235)
Q Consensus        52 ~i~~~~~~~~~~~vLdiG~G---~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~  125 (235)
                      .+.......++.+||-+.+|   .|..+..+++.. .++++++--++...+...+.+...+.     -.++..   +..+
T Consensus        19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGa-----d~vi~~~~~~~~~   92 (189)
T d1gu7a2          19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGA-----TQVITEDQNNSRE   92 (189)
T ss_dssp             HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTC-----SEEEEHHHHHCGG
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccc-----cEEEeccccchhH
Confidence            44445566667788887433   356666777663 45888775454444444444333321     112222   2111


Q ss_pred             CC--------CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688          126 LP--------FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       126 ~~--------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~  169 (235)
                      ..        .....+|+|+-.     +.  ...+..+.++|+|+|+++...
T Consensus        93 ~~~~v~~~~~~~g~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2          93 FGPTIKEWIKQSGGEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             GHHHHHHHHHHHTCCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEECC
T ss_pred             HHHHHHHHHhhccCCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEEC
Confidence            10        013468888832     22  234677889999999998754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.73  E-value=1.2  Score=31.60  Aligned_cols=72  Identities=19%  Similarity=0.290  Sum_probs=50.5

Q ss_pred             EEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------CCCC
Q 026688           65 IIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------FASS  131 (235)
Q Consensus        65 vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~  131 (235)
                      +|--|++.|   ..+..|++.+.  .|..+|.+++.++...+.+...    ..++.++.+|+.+..          -.-+
T Consensus         4 alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQA----GGHAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             EEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            466677655   33445666665  9999999999998888877664    346888899997632          0126


Q ss_pred             ceeEEEecccc
Q 026688          132 SIDAVHAGAAI  142 (235)
Q Consensus       132 ~~D~i~~~~~l  142 (235)
                      ..|+++.+...
T Consensus        78 ~iDilVnnAG~   88 (255)
T d1gega_          78 GFDVIVNNAGV   88 (255)
T ss_dssp             CCCEEEECCCC
T ss_pred             CccEEEecccc
Confidence            79999977544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.62  E-value=0.69  Score=29.11  Aligned_cols=90  Identities=11%  Similarity=0.015  Sum_probs=49.0

Q ss_pred             eEEEecCCC-chH-HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeEEE
Q 026688           64 NIIDASCGS-GLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVH  137 (235)
Q Consensus        64 ~vLdiG~G~-G~~-~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~i~  137 (235)
                      +++-+|+|. |.. +..|.+.+.  .|+.+|.+++.++.++.          .....+.+|..+..    ..-...|.++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~--~vvvid~d~~~~~~~~~----------~~~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNAYAS----------YATHAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHHTTT----------TCSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC--eEEEecCcHHHHHHHHH----------hCCcceeeecccchhhhccCCccccEEE
Confidence            456667764 322 334444454  89999999998887653          13456678876642    1124567766


Q ss_pred             ecccccccCCh-HHHHHHHHHhccCCcEEEEEE
Q 026688          138 AGAAIHCWSSP-STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       138 ~~~~l~~~~~~-~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +...    .+. ...+-.+.+.+.|...++...
T Consensus        70 ~~~~----~~~~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          70 VAIG----ANIQASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             ECCC----SCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEcC----chHHhHHHHHHHHHHcCCCcEEeec
Confidence            4222    111 122333334444556665543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.41  E-value=0.6  Score=33.41  Aligned_cols=75  Identities=16%  Similarity=0.146  Sum_probs=54.6

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  127 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------  127 (235)
                      .++++|--|++.|   ..+..|++.+.  .|..+|.+++.++.+.+.+...    ..++..+.+|+.+..          
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~   77 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREK----GVEARSYVCDVTSEEAVIGTVDSVV   77 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT----TSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            3678888887776   34556677765  8999999999999888887664    346788899987632          


Q ss_pred             CCCCceeEEEeccc
Q 026688          128 FASSSIDAVHAGAA  141 (235)
Q Consensus       128 ~~~~~~D~i~~~~~  141 (235)
                      -.-+..|+++.+..
T Consensus        78 ~~~g~iDilVnnaG   91 (260)
T d1zema1          78 RDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHhCCCCeehhhhc
Confidence            01157999997644

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.27  E-value=0.61  Score=33.90  Aligned_cols=78  Identities=15%  Similarity=0.171  Sum_probs=53.9

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|--|+..|   ..+..|++.+.  +|+.+|.++..++.+.+.+....   ..++.++..|+.+..          .
T Consensus        25 gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~---g~~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          25 GKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT---GNKVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc---CCceEEEEecccChHHHHHHhhhhhh
Confidence            678888888766   44556666665  99999999988777666654432   346778888886532          1


Q ss_pred             CCCceeEEEecccccc
Q 026688          129 ASSSIDAVHAGAAIHC  144 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~  144 (235)
                      ..+..|+++.+.....
T Consensus       100 ~~g~iDilvnnAg~~~  115 (294)
T d1w6ua_         100 VAGHPNIVINNAAGNF  115 (294)
T ss_dssp             HTCSCSEEEECCCCCC
T ss_pred             hccccchhhhhhhhcc
Confidence            1367899998765543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.25  E-value=0.3  Score=33.25  Aligned_cols=76  Identities=16%  Similarity=0.074  Sum_probs=50.6

Q ss_pred             CCCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC---CCCCCce
Q 026688           60 VLGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSSI  133 (235)
Q Consensus        60 ~~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~  133 (235)
                      -.+++||-.|++.|   ..+..+++.+.  +|+.++.+++.++...+.+....     ++.+...|..+.   .-.-+..
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~i   93 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRF-----KVNVTAAETADDASRAEAVKGA   93 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-----TCCCEEEECCSHHHHHHHTTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhcc-----chhhhhhhcccHHHHHHHhcCc
Confidence            45789999997765   34556667765  99999999988888777765532     334455555432   1112568


Q ss_pred             eEEEecccc
Q 026688          134 DAVHAGAAI  142 (235)
Q Consensus       134 D~i~~~~~l  142 (235)
                      |+++.+...
T Consensus        94 Dilin~Ag~  102 (191)
T d1luaa1          94 HFVFTAGAI  102 (191)
T ss_dssp             SEEEECCCT
T ss_pred             CeeeecCcc
Confidence            999977543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.06  E-value=0.55  Score=33.73  Aligned_cols=75  Identities=13%  Similarity=0.236  Sum_probs=52.9

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C----
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  128 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----  128 (235)
                      .++.+|--|++.|   ..+..|++.+.  +|+.+|.+++.++.+.+.+..     ..++.++.+|+.+..     +    
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGS-----PDVISFVHCDVTKDEDVRNLVDTTI   77 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC-----TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence            3678888888776   33455666665  999999999888887777644     335778888987632     0    


Q ss_pred             -CCCceeEEEecccc
Q 026688          129 -ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 -~~~~~D~i~~~~~l  142 (235)
                       .-+..|+++.+...
T Consensus        78 ~~~g~iD~lVnnAG~   92 (268)
T d2bgka1          78 AKHGKLDIMFGNVGV   92 (268)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCcceecccccc
Confidence             12578999976554

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.04  E-value=1.3  Score=29.00  Aligned_cols=136  Identities=10%  Similarity=-0.013  Sum_probs=69.5

Q ss_pred             HHhhcCCCCCCeEEEecCCC-chH-HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688           53 MKGYLKPVLGGNIIDASCGS-GLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  130 (235)
Q Consensus        53 i~~~~~~~~~~~vLdiG~G~-G~~-~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (235)
                      ..+.+....+.+||-+|.|. |.. +..|...+. ..++.+..+.+-.+...+.+   +      ..  ..++.++.-.-
T Consensus        15 a~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~l~~~~---~------~~--~~~~~~~~~~l   82 (159)
T d1gpja2          15 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDL---G------GE--AVRFDELVDHL   82 (159)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHH---T------CE--ECCGGGHHHHH
T ss_pred             HHHHhCCcccCeEEEECCCHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHHHHHhh---h------cc--cccchhHHHHh
Confidence            33344444578999999874 432 334455443 37888888754433322222   1      12  22333332112


Q ss_pred             CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHH
Q 026688          131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  210 (235)
Q Consensus       131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  210 (235)
                      ..+|+|++...-.+.-=....++...+.-+.+..+++.+...+.  ...+-..        .......++.+++..+.++
T Consensus        83 ~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr--~vd~~v~--------~~~~v~l~~ld~l~~~~~~  152 (159)
T d1gpja2          83 ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPR--DVEEGVE--------NIEDVEVRTIDDLRVIARE  152 (159)
T ss_dssp             HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC--SBCTTGG--------GSTTEEEEEHHHHHHHHHH
T ss_pred             ccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCC--CcChhhh--------ccCCeEEEeHHHHHHHHHH
Confidence            47999998765443221124455555554555555665654322  0111111        1123556788888877654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.76  E-value=0.91  Score=28.40  Aligned_cols=87  Identities=18%  Similarity=0.058  Sum_probs=57.4

Q ss_pred             CCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeEEEeccccccc
Q 026688           70 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVHAGAAIHCW  145 (235)
Q Consensus        70 ~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~i~~~~~l~~~  145 (235)
                      ||.|..+..+++......+..+|.++...+..+.          ..+.++.+|..+..    ..-+..+.+++..     
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----   70 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----------SGANFVHGDPTRVSDLEKANVRGARAVIVNL-----   70 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----------TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----------cCccccccccCCHHHHHHhhhhcCcEEEEec-----
Confidence            4567788888887666689999999988776643          25778889986632    2235677777522     


Q ss_pred             CChH--HHHHHHHHhccCCcEEEEEEec
Q 026688          146 SSPS--TGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       146 ~~~~--~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ++..  ..+-...+.+.|...++.....
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~iia~~~~   98 (129)
T d2fy8a1          71 ESDSETIHCILGIRKIDESVRIIAEAER   98 (129)
T ss_dssp             SSHHHHHHHHHHHHHHCSSSCEEEECSS
T ss_pred             cchhhhHHHHHHHHHHCCCceEEEEEcC
Confidence            2222  3344556677888777765544

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=1.2  Score=31.58  Aligned_cols=72  Identities=21%  Similarity=0.220  Sum_probs=50.5

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------C-
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------F-  128 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~-  128 (235)
                      .++++|--|++.|   ..+..|++.+.  +|..+|.+++.++...+.+        .+..++.+|+.+..        . 
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~--------~~~~~~~~Dvs~~~~v~~~~~~~~   74 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQEL--------PGAVFILCDVTQEDDVKTLVSETI   74 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC--------TTEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhc--------CCCeEEEccCCCHHHHHHHHHHHH
Confidence            3678888888776   34556666665  9999999998887766542        35778889987632        0 


Q ss_pred             -CCCceeEEEecccc
Q 026688          129 -ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 -~~~~~D~i~~~~~l  142 (235)
                       .-+..|+++.+...
T Consensus        75 ~~~g~iDilVnnAG~   89 (250)
T d1ydea1          75 RRFGRLDCVVNNAGH   89 (250)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhcCCCCEEEecccc
Confidence             11578999977553

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.63  E-value=1.9  Score=30.25  Aligned_cols=72  Identities=19%  Similarity=0.140  Sum_probs=49.7

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC------CCCCc
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FASSS  132 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~  132 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++.++...+.        ..++..+..|+.+..      -.-+.
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~--------~~~~~~~~~Dv~~~~~v~~~~~~~g~   74 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKE--------CPGIEPVCVDLGDWDATEKALGGIGP   74 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh--------cCCCeEEEEeCCCHHHHHHHHHHcCC
Confidence            678888888776   34556666665  999999998777666554        235677888887532      11267


Q ss_pred             eeEEEeccccc
Q 026688          133 IDAVHAGAAIH  143 (235)
Q Consensus       133 ~D~i~~~~~l~  143 (235)
                      .|+++.+....
T Consensus        75 iDilVnnAg~~   85 (242)
T d1cyda_          75 VDLLVNNAALV   85 (242)
T ss_dssp             CSEEEECCCCC
T ss_pred             CeEEEECCccc
Confidence            89999775543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.61  E-value=0.81  Score=32.65  Aligned_cols=77  Identities=22%  Similarity=0.193  Sum_probs=55.3

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.+.....  ..++.++.+|+.+..          -
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~~   79 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAP--DAEVLTTVADVSDEAQVEAYVTATTE   79 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCC--CCeEEEEeccCCCHHHHHHHHHHHHH
Confidence            678888888776   34667777775  999999999988888777655432  346788889987632          0


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      .-+..|+++.+..+
T Consensus        80 ~~G~iDiLVnnAG~   93 (258)
T d1iy8a_          80 RFGRIDGFFNNAGI   93 (258)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HhCCCCEEEECCcc
Confidence            11578999987543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.36  E-value=0.75  Score=33.09  Aligned_cols=79  Identities=18%  Similarity=0.175  Sum_probs=55.9

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  127 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------  127 (235)
                      .++++|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.+...+.. ..++.++.+|+.+..          
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~   80 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVS-EKQVNSVVADVTTEDGQDQIINSTL   80 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCC-GGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCC-CCceEEEEccCCCHHHHHHHHHHHH
Confidence            3678888888776   44556666665  9999999999999988887664321 246888999987632          


Q ss_pred             CCCCceeEEEecccc
Q 026688          128 FASSSIDAVHAGAAI  142 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l  142 (235)
                      -.-+..|+++.+...
T Consensus        81 ~~~g~iDilvnnAG~   95 (272)
T d1xkqa_          81 KQFGKIDVLVNNAGA   95 (272)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCceEEEeCCcc
Confidence            011578999976443

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.94  E-value=0.72  Score=33.23  Aligned_cols=77  Identities=23%  Similarity=0.270  Sum_probs=55.3

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.+...+.. ..++.++.+|+.+..     +     
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVP-AEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            678888888776   34556666665  9999999999999888887665421 246888999987632     0     


Q ss_pred             CCCceeEEEeccc
Q 026688          129 ASSSIDAVHAGAA  141 (235)
Q Consensus       129 ~~~~~D~i~~~~~  141 (235)
                      .-+..|+++.+..
T Consensus        81 ~~G~iDilVnnAG   93 (274)
T d1xhla_          81 KFGKIDILVNNAG   93 (274)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCceEEEeecc
Confidence            1157899998754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.76  E-value=0.82  Score=32.60  Aligned_cols=77  Identities=22%  Similarity=0.179  Sum_probs=51.1

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|+.+|.+++.++.+.+.+....   ..++.++.+|+.+..          -
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF---GVKTKAYQCDVSNTDIVTKTIQQIDA   83 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH---TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            678888887665   34556666665  89999998776666555443321   346788899997632          1


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      .-+..|+++.+....
T Consensus        84 ~~g~iDilVnnAg~~   98 (260)
T d1h5qa_          84 DLGPISGLIANAGVS   98 (260)
T ss_dssp             HSCSEEEEEECCCCC
T ss_pred             HhCCCcEeccccccc
Confidence            126799999876543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.70  E-value=1.2  Score=31.60  Aligned_cols=74  Identities=16%  Similarity=0.203  Sum_probs=51.7

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.+       ..++.++.+|+.+..     +     
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~-------~~~~~~~~~Dvt~~~~v~~~~~~~~~   75 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEI-------GPAACAIALDVTDQASIDRCVAELLD   75 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-------CCceEEEEeeCCCHHHHHHHHHHHHH
Confidence            677888888776   34556666665  9999999988777766654       346778889997632     0     


Q ss_pred             CCCceeEEEecccccc
Q 026688          129 ASSSIDAVHAGAAIHC  144 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~  144 (235)
                      .-+..|+++.+....+
T Consensus        76 ~~g~iDilVnnAg~~~   91 (256)
T d1k2wa_          76 RWGSIDILVNNAALFD   91 (256)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HhCCccEEEeeccccc
Confidence            1157899998766544

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=89.50  E-value=0.37  Score=34.08  Aligned_cols=53  Identities=9%  Similarity=0.108  Sum_probs=35.3

Q ss_pred             eEEecccccC--CCCCCceeEEEeccccc----ccC---Ch-------HHHHHHHHHhccCCcEEEEEE
Q 026688          117 LLVRADISRL--PFASSSIDAVHAGAAIH----CWS---SP-------STGVAEISRVLRPGGVFVGTT  169 (235)
Q Consensus       117 ~~~~~d~~~~--~~~~~~~D~i~~~~~l~----~~~---~~-------~~~l~~~~~~L~pgG~li~~~  169 (235)
                      +++++|..+.  .++++++|+|+..--..    ..+   +.       ...++++.++|+|||.+++..
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence            3677887652  35678899999763321    111   11       257889999999999887643

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.37  E-value=0.33  Score=34.90  Aligned_cols=55  Identities=18%  Similarity=0.209  Sum_probs=37.8

Q ss_pred             eeEEecccccC--CCCCCceeEEEecccc----cccCC-------hHHHHHHHHHhccCCcEEEEEEe
Q 026688          116 FLLVRADISRL--PFASSSIDAVHAGAAI----HCWSS-------PSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       116 ~~~~~~d~~~~--~~~~~~~D~i~~~~~l----~~~~~-------~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      -.++.+|..+.  .++++++|+|+..--.    .....       ....+.++.++|+|+|.+++...
T Consensus         5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            34667787663  4668899999986332    11111       24678899999999999998654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.26  E-value=0.42  Score=32.57  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCCC------------CCeeEEec
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFPK------------ENFLLVRA  121 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~------------~~~~~~~~  121 (235)
                      ++|--||+|+ | ..+..++..+.  .|+.+|.+++.++.+++++...       +....            .++. ...
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~-~~~   81 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA-TST   81 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE-EES
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcc-ccc
Confidence            6889999997 4 34555666665  9999999999999888766431       11000            0111 112


Q ss_pred             ccccCCCCCCceeEEEecccccccCC----hHHHHHHHHHhccCCcEEEEEEec
Q 026688          122 DISRLPFASSSIDAVHAGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       122 d~~~~~~~~~~~D~i~~~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      |..+   .....|+|+     +..+.    ..++++++.+.++|+..|.-.+..
T Consensus        82 d~~~---a~~~ad~Vi-----Eav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~  127 (192)
T d1f0ya2          82 DAAS---VVHSTDLVV-----EAIVENLKVKNELFKRLDKFAAEHTIFASNTSS  127 (192)
T ss_dssp             CHHH---HTTSCSEEE-----ECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS
T ss_pred             hhHh---hhcccceeh-----hhcccchhHHHHHHHHHhhhcccCceeeccCcc
Confidence            2211   123467777     44433    258899999999998777654443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.05  E-value=1  Score=32.05  Aligned_cols=76  Identities=16%  Similarity=0.157  Sum_probs=54.7

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------C-C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------F-A  129 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~-~  129 (235)
                      ++++|--|++.|   ..+..|++.+.  .|..+|.+++.++.+.+.+...    ..++....+|+.+..        . .
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKK----GFQVTGSVCDASLRPEREKLMQTVSS   81 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEeccCCCHHHHHHHHHHHHH
Confidence            678888888776   34556677765  9999999999888888777654    346888889987532        0 0


Q ss_pred             --CCceeEEEeccccc
Q 026688          130 --SSSIDAVHAGAAIH  143 (235)
Q Consensus       130 --~~~~D~i~~~~~l~  143 (235)
                        .+..|+++.+....
T Consensus        82 ~~~g~idilvnnAG~~   97 (259)
T d1xq1a_          82 MFGGKLDILINNLGAI   97 (259)
T ss_dssp             HHTTCCSEEEEECCC-
T ss_pred             HhCCCccccccccccc
Confidence              25689999875543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.95  E-value=0.95  Score=32.32  Aligned_cols=78  Identities=17%  Similarity=0.127  Sum_probs=53.8

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++.+|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.+...+.. ..++.++..|+.+..          -
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVS-EQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCC-cCceEEEEccCCCHHHHHHHHHHHHH
Confidence            567777777765   33456666665  9999999999998888877665321 246888999997532          0


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      .-+..|+++.+...
T Consensus        82 ~~g~iDilvnnAG~   95 (264)
T d1spxa_          82 KFGKLDILVNNAGA   95 (264)
T ss_dssp             HHSCCCEEEECCC-
T ss_pred             HhCCCCEeeccccc
Confidence            12578999976543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=3  Score=30.25  Aligned_cols=81  Identities=14%  Similarity=0.102  Sum_probs=54.5

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-CCCCCCeeEEecccccCC-----C---
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRLP-----F---  128 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~~-----~---  128 (235)
                      .++++|--|++.|   ..+..|++.+.  +|+.+|.+++.++.+.+.+.... .....++..+.+|+.+..     +   
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            3788888888776   23446666665  99999999988888777665421 111346888899997632     0   


Q ss_pred             --CCCceeEEEeccccc
Q 026688          129 --ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 --~~~~~D~i~~~~~l~  143 (235)
                        .-+..|+++.+....
T Consensus        89 ~~~~G~iDiLVnnAg~~  105 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQ  105 (297)
T ss_dssp             HHHHSCCCEEEECCCCC
T ss_pred             HHHhCCeEEEEeecccc
Confidence              125789999875543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=88.64  E-value=0.98  Score=32.02  Aligned_cols=75  Identities=16%  Similarity=0.142  Sum_probs=53.0

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.+..     ..++.++.+|+.+..          -
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGT-----PDQIQFFQHDSSDEDGWTKLFDATEK   78 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC-----TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            677887787665   33456666665  899999999888887776643     347888999997632          0


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      .-+..|+++.+....
T Consensus        79 ~~G~iDiLVnnAg~~   93 (251)
T d1zk4a1          79 AFGPVSTLVNNAGIA   93 (251)
T ss_dssp             HHSSCCEEEECCCCC
T ss_pred             HhCCceEEEeccccc
Confidence            115789999775543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=88.51  E-value=1.3  Score=31.39  Aligned_cols=78  Identities=18%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCC-HHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..++.+ +..++.+.+.+....   ..++.++.+|+.+..     +    
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~   78 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH---GVKVLYDGADLSKGEAVRGLVDNAV   78 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH---TSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc---CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            677887777766   34556667665  89999986 566777666554432   346888899997632     0    


Q ss_pred             -CCCceeEEEecccccc
Q 026688          129 -ASSSIDAVHAGAAIHC  144 (235)
Q Consensus       129 -~~~~~D~i~~~~~l~~  144 (235)
                       .-+..|+++.+....+
T Consensus        79 ~~~G~iDiLVnnAG~~~   95 (260)
T d1x1ta1          79 RQMGRIDILVNNAGIQH   95 (260)
T ss_dssp             HHHSCCSEEEECCCCCC
T ss_pred             HHhCCCcEEEeeccccc
Confidence             0157999998765443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.51  E-value=1.2  Score=27.10  Aligned_cols=85  Identities=12%  Similarity=0.071  Sum_probs=49.1

Q ss_pred             CCeEEEecCCCch--HHHHHHHcCCCceEEEEeC--CHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           62 GGNIIDASCGSGL--FSRIFAKSGLFSLVVALDY--SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~G~G~--~~~~l~~~~~~~~v~~~D~--s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      +++||-+|+|.-.  -+..+.+.+.  .++.++.  +++....+.          ..++++....+....+  ..+++|+
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga--~v~v~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~dl--~~~~lv~   77 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGA--RLTVNALTFIPQFTVWAN----------EGMLTLVEGPFDETLL--DSCWLAI   77 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTB--EEEEEESSCCHHHHHHHT----------TTSCEEEESSCCGGGG--TTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeccCChHHHHHHh----------cCCceeeccCCCHHHh--CCCcEEe
Confidence            7899999999732  3334555554  6666665  444333322          2357777766655433  3567777


Q ss_pred             ecccccccCChHHHHHHHHHhccCCcEEE
Q 026688          138 AGAAIHCWSSPSTGVAEISRVLRPGGVFV  166 (235)
Q Consensus       138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li  166 (235)
                      ...      +....-.++.+..++.|.++
T Consensus        78 ~at------~d~~~n~~i~~~a~~~~ilV  100 (113)
T d1pjqa1          78 AAT------DDDTVNQRVSDAAESRRIFC  100 (113)
T ss_dssp             ECC------SCHHHHHHHHHHHHHTTCEE
T ss_pred             ecC------CCHHHHHHHHHHHHHcCCEE
Confidence            532      22233446666667777665

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=88.13  E-value=2.5  Score=29.72  Aligned_cols=69  Identities=20%  Similarity=0.269  Sum_probs=46.1

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++..+.+++.          +..++..|+.+..     +     
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~----------~~~~~~~Dv~~~~~v~~~~~~~~~   72 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAI----------GGAFFQVDLEDERERVRFVEEAAY   72 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHH----------TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc----------CCeEEEEeCCCHHHHHHHHHHHHH
Confidence            678888887766   34556666665  999999998776655432          2456778887632     0     


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      .-+..|+++.+...
T Consensus        73 ~~G~iDiLVnnAG~   86 (248)
T d2d1ya1          73 ALGRVDVLVNNAAI   86 (248)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             hcCCCCeEEEeCcC
Confidence            11578999977544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.63  E-value=1.3  Score=31.66  Aligned_cols=77  Identities=14%  Similarity=0.174  Sum_probs=53.1

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|--|+++|   ..+..+++.+.  +|+.++.+++.++.+.+......   .....+...|..+..          .
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~   88 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG---AASAHYIAGTMEDMTFAEQFVAQAGK   88 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhh---cccchhhhhhhhhHHHHHHHHHHHHH
Confidence            688999998887   44556667765  99999999999988877655432   345666777765421          1


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      ..+..|+++.+....
T Consensus        89 ~~g~~~~li~nag~~  103 (269)
T d1xu9a_          89 LMGGLDMLILNHITN  103 (269)
T ss_dssp             HHTSCSEEEECCCCC
T ss_pred             HhCCccccccccccc
Confidence            125678888765543

>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: hypothetical protein YedF (EC005)
species: Escherichia coli [TaxId: 562]

Probab=87.59  E-value=1.3  Score=26.39  Aligned_cols=73  Identities=14%  Similarity=0.048  Sum_probs=47.7

Q ss_pred             ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHc
Q 026688          132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  211 (235)
Q Consensus       132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  211 (235)
                      ..|..+-...+. .|-|.-.+++..+-+++|..|.+..-..                          -+..++..++++.
T Consensus        25 ~~d~~LD~~G~~-CP~Pll~~k~~l~~l~~Ge~L~V~~dd~--------------------------~a~~di~~~~~~~   77 (97)
T d1je3a_          25 VPDYRLDMVGEP-CPYPAVATLEAMPQLKKGEILEVVSDCP--------------------------QSINNIPLDARNH   77 (97)
T ss_dssp             CEEEEECSBCCS-SSSSTHHHHHHTTTCCSSCEEEEEEBCS--------------------------SSSCHHHHHHHHH
T ss_pred             CCceEEeCCCCc-CCHHHHHHHHHHHcCCCCCEEEEEeCCc--------------------------cHHHHHHHHHHHc
Confidence            345544333333 3444455677778888988776655433                          2456889999999


Q ss_pred             CCceeEEEeeCcEEEEEEec
Q 026688          212 GLVDFKCTRNRGFVMFTATK  231 (235)
Q Consensus       212 Gf~~~~~~~~~~~~~~~~~k  231 (235)
                      |++++.+...+..+.++.+|
T Consensus        78 g~~v~~~~~~~~~~~i~I~K   97 (97)
T d1je3a_          78 GYTVLDIQQDGPTIRYLIQK   97 (97)
T ss_dssp             TCSEEEEEECSSSEEEEEEC
T ss_pred             CCEEEEEEEeCCEEEEEEEC
Confidence            99998887766666666554

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=87.52  E-value=1.9  Score=28.53  Aligned_cols=95  Identities=7%  Similarity=0.046  Sum_probs=51.9

Q ss_pred             CeEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           63 GNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        63 ~~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      .+|--||+|.  ..++..|++.+.  +|++.|.+++.++...+.-...      ..........+........|.++...
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF--VVCAFNRTVSKVDDFLANEAKG------TKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSTHHHHHHHHTTTTT------SSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHHHHhcccc------ccccchhhhhhhhhhhcccceEEEec
Confidence            3566788875  356667777776  8999999998877765532211      11111112211111123456666421


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEE
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVG  167 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~  167 (235)
                        ..-.....++..+...+++|..++-
T Consensus        75 --~~~~~v~~v~~~l~~~~~~g~iiid   99 (176)
T d2pgda2          75 --KAGQAVDNFIEKLVPLLDIGDIIID   99 (176)
T ss_dssp             --CTTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             --CchHHHHHHHHHHHhccccCcEEEe
Confidence              1111223567788888998765443

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.07  E-value=3.6  Score=28.79  Aligned_cols=73  Identities=12%  Similarity=0.151  Sum_probs=47.8

Q ss_pred             CCeEEEecCCC--c---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---------
Q 026688           62 GGNIIDASCGS--G---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------  127 (235)
Q Consensus        62 ~~~vLdiG~G~--G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------  127 (235)
                      ++++|--|+++  |   ..+..|++.+.  +|+.++.++...+.+.+.....     .+......|..+..         
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   77 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQL-----GSDIVLQCDVAEDASIDTMFAEL   77 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHT-----TCCCEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhc-----CCcceeecccchHHHHHHHHHHh
Confidence            67888888755  5   35667777776  8999999988777776655543     23445555554321         


Q ss_pred             -CCCCceeEEEeccc
Q 026688          128 -FASSSIDAVHAGAA  141 (235)
Q Consensus       128 -~~~~~~D~i~~~~~  141 (235)
                       ...+..|.++.+..
T Consensus        78 ~~~~~~~d~~v~~a~   92 (258)
T d1qsga_          78 GKVWPKFDGFVHSIG   92 (258)
T ss_dssp             HTTCSSEEEEEECCC
T ss_pred             hhcccccceEEEeec
Confidence             22367888886643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=86.36  E-value=0.37  Score=31.60  Aligned_cols=96  Identities=15%  Similarity=0.023  Sum_probs=52.5

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  140 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  140 (235)
                      ++|+-+|+|. | .++..|++.+.  +|+.++.++...+..    ................+.   +.....+|+|+..-
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH--EVQGWLRVPQPYCSV----NLVETDGSIFNESLTAND---PDFLATSDLLLVTL   71 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCSEEEE----EEECTTSCEEEEEEEESC---HHHHHTCSEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhh----ccccCCccccccccccch---hhhhcccceEEEee
Confidence            4789999987 4 45556667666  899998876321110    000000000001111111   11125689998643


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688          141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTY  170 (235)
Q Consensus       141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~  170 (235)
                      --+   +.+..++.+...+.++..++....
T Consensus        72 ka~---~~~~~~~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          72 KAW---QVSDAVKSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             CGG---GHHHHHHHHHTTSCTTSCEEEECS
T ss_pred             ccc---chHHHHHhhccccCcccEEeeccC
Confidence            333   235778889999998887766543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.96  E-value=1.6  Score=30.69  Aligned_cols=74  Identities=18%  Similarity=0.118  Sum_probs=52.1

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  127 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------  127 (235)
                      .++++|--|++.|   ..+..|++.+.  +|..+|.+++.++...+.+.       .+..++.+|+.+..          
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~   75 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELA-------DAARYVHLDVTQPAQWKAAVDTAV   75 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTG-------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhh-------CcceEEEeecCCHHHHHHHHHHHH
Confidence            3678888888776   45556777765  99999999988877766553       35778888987632          


Q ss_pred             CCCCceeEEEeccccc
Q 026688          128 FASSSIDAVHAGAAIH  143 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~  143 (235)
                      -.-+..|+++.+....
T Consensus        76 ~~~g~idilinnAG~~   91 (244)
T d1nffa_          76 TAFGGLHVLVNNAGIL   91 (244)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHhCCCeEEEECCccc
Confidence            0125789999775543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.95  E-value=2  Score=27.90  Aligned_cols=82  Identities=15%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688           64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  141 (235)
Q Consensus        64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~  141 (235)
                      +|--||+|. | .++..|++.+.  +|++.|.++..++...+.-          .. ...+..+.   ....|+|++   
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~----------~~-~~~~~~e~---~~~~d~ii~---   62 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY--SLVVSDRNPEAIADVIAAG----------AE-TASTAKAI---AEQCDVIIT---   62 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT----------CE-ECSSHHHH---HHHCSEEEE---
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHhh----------hh-hcccHHHH---HhCCCeEEE---
Confidence            466788886 3 55667777776  8999999998877765421          11 22222221   245688874   


Q ss_pred             ccccCChH---HHH---HHHHHhccCCcEEE
Q 026688          142 IHCWSSPS---TGV---AEISRVLRPGGVFV  166 (235)
Q Consensus       142 l~~~~~~~---~~l---~~~~~~L~pgG~li  166 (235)
                        .++++.   .++   ..+...++||..++
T Consensus        63 --~v~~~~~v~~v~~~~~~~~~~~~~g~iii   91 (161)
T d1vpda2          63 --MLPNSPHVKEVALGENGIIEGAKPGTVLI   91 (161)
T ss_dssp             --CCSSHHHHHHHHHSTTCHHHHCCTTCEEE
T ss_pred             --EcCCHHHHHHHHhCCcchhhccCCCCEEE
Confidence              344443   223   34666777765444

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=85.73  E-value=1.2  Score=26.34  Aligned_cols=67  Identities=15%  Similarity=0.134  Sum_probs=40.7

Q ss_pred             CCeEEEecC-CCc--hHHHHHHHcCCCceEEEEeCCH-HHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688           62 GGNIIDASC-GSG--LFSRIFAKSGLFSLVVALDYSE-NMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  137 (235)
Q Consensus        62 ~~~vLdiG~-G~G--~~~~~l~~~~~~~~v~~~D~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~  137 (235)
                      .++|.-+|. |+|  .++..+.+++.  .|+|.|... ...+...    ..      .+.+........   ....|+|+
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~--~VsGSD~~~~~~~~~L~----~~------Gi~v~~g~~~~~---i~~~d~vV   72 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGY--QISGSDIADGVVTQRLA----QA------GAKIYIGHAEEH---IEGASVVV   72 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTC--EEEEEESCCSHHHHHHH----HT------TCEEEESCCGGG---GTTCSEEE
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCC--EEEEEeCCCChhhhHHH----HC------CCeEEECCcccc---CCCCCEEE
Confidence            577888865 344  55677788887  999999863 2332222    21      345555444332   24578888


Q ss_pred             eccccc
Q 026688          138 AGAAIH  143 (235)
Q Consensus       138 ~~~~l~  143 (235)
                      ....+.
T Consensus        73 ~S~AI~   78 (96)
T d1p3da1          73 VSSAIK   78 (96)
T ss_dssp             ECTTSC
T ss_pred             ECCCcC
Confidence            776654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=85.09  E-value=4.3  Score=27.87  Aligned_cols=98  Identities=11%  Similarity=-0.064  Sum_probs=52.6

Q ss_pred             CCeEEEecCCC-ch-HHHHHHHcCCCceEE-EEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688           62 GGNIIDASCGS-GL-FSRIFAKSGLFSLVV-ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  138 (235)
Q Consensus        62 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~v~-~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  138 (235)
                      .-+|--||||. |. ......+..+..+++ .+|.+++..+.+.+.+..     ...-.....|+.++ +.....|+|+.
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i-----~~~~~~~~~d~~el-l~~~~iD~V~I  106 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGV-----DPRKIYDYSNFDKI-AKDPKIDAVYI  106 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTC-----CGGGEECSSSGGGG-GGCTTCCEEEE
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhcc-----ccccccccCchhhh-cccccceeeee
Confidence            46899999985 22 222333444556666 679998877766655421     11111122444443 23457899975


Q ss_pred             cccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          139 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                      ...-      ..-...+.+.|+.|=.+++.-+.
T Consensus       107 ~tp~------~~H~~~~~~al~~gk~v~~EKPl  133 (221)
T d1h6da1         107 ILPN------SLHAEFAIRAFKAGKHVMCEKPM  133 (221)
T ss_dssp             CSCG------GGHHHHHHHHHHTTCEEEECSSC
T ss_pred             ccch------hhhhhHHHHhhhcchhhhcCCCc
Confidence            3221      11234566666666666655443

>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: SirA
species: Escherichia coli [TaxId: 562]

Probab=84.90  E-value=2.1  Score=24.25  Aligned_cols=60  Identities=15%  Similarity=0.125  Sum_probs=42.4

Q ss_pred             CChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEE
Q 026688          146 SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFV  225 (235)
Q Consensus       146 ~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  225 (235)
                      |-|.-.+++..+-+.+|..|.+..-..                          -+..++..+++..|++++.....+..+
T Consensus        20 P~P~l~~k~al~~~~~G~~l~v~~dd~--------------------------~a~~di~~~~~~~g~~~~~~~~~~~~~   73 (81)
T d1dcja_          20 PEPVMMVRKTVRNMQPGETLLIIADDP--------------------------ATTRDIPGFCTFMEHELVAKETDGLPY   73 (81)
T ss_dssp             THHHHHHHHHHHHCCTTCCEEEEECST--------------------------THHHHHHHHHHHTTCEEEEEECSSSSE
T ss_pred             CHHHHHHHHHHHhCCCCCEEEEEeCCC--------------------------cHHHHHHHHHHHcCCEEEEEEEeCCEE
Confidence            334444667777788887666654332                          246788999999999998888777666


Q ss_pred             EEEEec
Q 026688          226 MFTATK  231 (235)
Q Consensus       226 ~~~~~k  231 (235)
                      .++.+|
T Consensus        74 ~~~I~K   79 (81)
T d1dcja_          74 RYLIRK   79 (81)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            666665

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.26  E-value=1  Score=29.92  Aligned_cols=84  Identities=11%  Similarity=0.046  Sum_probs=43.5

Q ss_pred             hhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEecccccCCCCCCce
Q 026688           55 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISRLPFASSSI  133 (235)
Q Consensus        55 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~  133 (235)
                      +......+++||-+|+|.-.-+...+-.. ..+++.+..+++-.+.....+.....  ... ..+...+...   ....+
T Consensus        11 ~~~~~~~~k~vlIlGaGG~arai~~aL~~-~~~i~I~nR~~~ka~~l~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~   84 (177)
T d1nvta1          11 EEIGRVKDKNIVIYGAGGAARAVAFELAK-DNNIIIANRTVEKAEALAKEIAEKLN--KKFGEEVKFSGLDV---DLDGV   84 (177)
T ss_dssp             HHHCCCCSCEEEEECCSHHHHHHHHHHTS-SSEEEEECSSHHHHHHHHHHHHHHHT--CCHHHHEEEECTTC---CCTTC
T ss_pred             HhCCCcCCCEEEEECCcHHHHHHHHHHcc-ccceeeehhhhhHHHHHHHHHHHhhc--hhhhhhhhhhhhhh---ccchh
Confidence            33444557899999998533332222222 24899999987766655444432210  001 1122222222   23467


Q ss_pred             eEEEecccccc
Q 026688          134 DAVHAGAAIHC  144 (235)
Q Consensus       134 D~i~~~~~l~~  144 (235)
                      |+++.......
T Consensus        85 dliIn~tp~g~   95 (177)
T d1nvta1          85 DIIINATPIGM   95 (177)
T ss_dssp             CEEEECSCTTC
T ss_pred             hhhccCCcccc
Confidence            88887655543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.89  E-value=2.8  Score=29.32  Aligned_cols=71  Identities=25%  Similarity=0.272  Sum_probs=48.5

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++.++.+.+.         .+..++.+|+.+..     +     
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~   73 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEA---------VGAHPVVMDVADPASVERGFAEALA   73 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHT---------TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHH---------cCCeEEEEecCCHHHHHHHHHHHHH
Confidence            678888888776   33456666665  999999999887776553         24567888987632     0     


Q ss_pred             CCCceeEEEeccccc
Q 026688          129 ASSSIDAVHAGAAIH  143 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~  143 (235)
                      .-+..|+++.+....
T Consensus        74 ~~g~iDilVnnAG~~   88 (242)
T d1ulsa_          74 HLGRLDGVVHYAGIT   88 (242)
T ss_dssp             HHSSCCEEEECCCCC
T ss_pred             hcCCceEEEECCccc
Confidence            015799999775543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=83.80  E-value=2.4  Score=30.38  Aligned_cols=72  Identities=25%  Similarity=0.271  Sum_probs=49.8

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++++|--|++.|   ..+..|++.+.  +|..+|.+++.++...+..       ..++.....|+.+..          -
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~-------~~~~~~~~~Dv~~~~~~~~~~~~~~~   75 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDH-------GDNVLGIVGDVRSLEDQKQAASRCVA   75 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHc-------CCCeeEEecccccHHHHHHHHHHHHH
Confidence            678888887766   34456666665  9999999998877766554       236778888887632          0


Q ss_pred             CCCceeEEEecccc
Q 026688          129 ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ~~~~~D~i~~~~~l  142 (235)
                      .-+..|+++.+..+
T Consensus        76 ~~g~idilvnnAG~   89 (276)
T d1bdba_          76 RFGKIDTLIPNAGI   89 (276)
T ss_dssp             HHSCCCEEECCCCC
T ss_pred             HhCCcccccccccc
Confidence            12578999976543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=83.53  E-value=2.3  Score=30.05  Aligned_cols=74  Identities=18%  Similarity=0.096  Sum_probs=51.5

Q ss_pred             CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------
Q 026688           61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  127 (235)
Q Consensus        61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------  127 (235)
                      .++++|--|++.|   ..+..|++.+.  +|..+|.+++.++...+.+       ..++.++.+|+.+..          
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~   74 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATAREL-------GDAARYQHLDVTIEEDWQRVVAYAR   74 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT-------GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-------CCceEEEEcccCCHHHHHHHHHHHH
Confidence            3678888888877   44566777765  9999999987776655443       236788899997632          


Q ss_pred             CCCCceeEEEeccccc
Q 026688          128 FASSSIDAVHAGAAIH  143 (235)
Q Consensus       128 ~~~~~~D~i~~~~~l~  143 (235)
                      -.-+..|+++.+....
T Consensus        75 ~~~g~iDilVnnAg~~   90 (254)
T d1hdca_          75 EEFGSVDGLVNNAGIS   90 (254)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHcCCccEEEecCccc
Confidence            0115789988775543

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.31  E-value=0.86  Score=32.21  Aligned_cols=74  Identities=8%  Similarity=0.124  Sum_probs=48.4

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----------
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----------  127 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----------  127 (235)
                      +++||--|+..|   .++..|++.+....|+.+..+++-++..++.   .    ..++.++..|+.+..           
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~---~----~~~~~~~~~Dvs~~~~v~~~~~~i~~   75 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI---K----DSRVHVLPLTVTCDKSLDTFVSKVGE   75 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC---C----CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh---h----CCceEEEEEecCCHHHHHHHHHHHHH
Confidence            478888888776   4445666666545788888887665544321   1    457889999997631           


Q ss_pred             -CCCCceeEEEecccc
Q 026688          128 -FASSSIDAVHAGAAI  142 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l  142 (235)
                       +.....|+++.+..+
T Consensus        76 ~~~~~~idilinnAG~   91 (250)
T d1yo6a1          76 IVGSDGLSLLINNAGV   91 (250)
T ss_dssp             HHGGGCCCEEEECCCC
T ss_pred             HhCCCCeEEEEEcCcc
Confidence             112348999988654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=83.15  E-value=0.88  Score=30.68  Aligned_cols=102  Identities=14%  Similarity=0.097  Sum_probs=59.1

Q ss_pred             CCeEEEecCCC-ch-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCCCC-------CeeEEeccccc
Q 026688           62 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFPKE-------NFLLVRADISR  125 (235)
Q Consensus        62 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~~-------~~~~~~~d~~~  125 (235)
                      -++|--||+|+ |. .+..++..+.  +|+.+|++++.++.+.+++...       +.....       ++. ...+...
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~   80 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIR-PTLSYGD   80 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEE-EESSSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceee-ccccccc
Confidence            35788899986 43 3445556655  8999999999988887765421       000000       011 1122211


Q ss_pred             CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688          126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  171 (235)
Q Consensus       126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~  171 (235)
                          -...|+|+= .+.+.+.-..++++++.+.++|+-.|.-.+..
T Consensus        81 ----~~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~  121 (186)
T d1wdka3          81 ----FGNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNTST  121 (186)
T ss_dssp             ----GGGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred             ----ccccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEecccc
Confidence                134677772 22222222357899999999998776655443

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=82.86  E-value=5.5  Score=27.67  Aligned_cols=76  Identities=18%  Similarity=0.176  Sum_probs=50.4

Q ss_pred             EEEecCCCc---hHHHHHHHcCCC-----ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---------
Q 026688           65 IIDASCGSG---LFSRIFAKSGLF-----SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------  127 (235)
Q Consensus        65 vLdiG~G~G---~~~~~l~~~~~~-----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------  127 (235)
                      ||--|++.|   ..+..|++.+..     ..+..++.+++.++...+.+...    ..++.++.+|+.+..         
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE----GALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT----TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHH
Confidence            455577665   234456666542     23889999999888888777654    346788889997632         


Q ss_pred             -CCCCceeEEEecccccc
Q 026688          128 -FASSSIDAVHAGAAIHC  144 (235)
Q Consensus       128 -~~~~~~D~i~~~~~l~~  144 (235)
                       -.-+..|+++.+.....
T Consensus        80 ~~~~g~iDilvnnAg~~~   97 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGR   97 (240)
T ss_dssp             HHHTSCCSEEEECCCCCC
T ss_pred             HHHcCCcceeeccccccc
Confidence             01257999998765543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=81.58  E-value=5.4  Score=27.84  Aligned_cols=75  Identities=16%  Similarity=0.123  Sum_probs=47.5

Q ss_pred             CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688           62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~  128 (235)
                      ++.+|--|++.|   ..+..|++.+.  .|..+|.++.-  .+...+...    ..++.++.+|+.+..          -
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~--~~~~~~~~~----g~~~~~~~~Dvs~~~~v~~~~~~~~~   76 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAP--EAEAAIRNL----GRRVLTVKCDVSQPGDVEAFGKQVIS   76 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCH--HHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchH--HHHHHHHHc----CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            677887787665   34556666665  89999987642  222333332    347888999997632          0


Q ss_pred             CCCceeEEEecccccc
Q 026688          129 ASSSIDAVHAGAAIHC  144 (235)
Q Consensus       129 ~~~~~D~i~~~~~l~~  144 (235)
                      .-+..|+++.+.....
T Consensus        77 ~~G~iDilVnnAG~~~   92 (247)
T d2ew8a1          77 TFGRCDILVNNAGIYP   92 (247)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HcCCCCEEEECCCCCC
Confidence            1257999998765543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.04  E-value=1.4  Score=29.92  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=28.6

Q ss_pred             CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHH
Q 026688           63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCY  102 (235)
Q Consensus        63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~  102 (235)
                      ++|--+|+|. | .++..+++++.  +|+|+|+++..++..+
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~--~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGH--EVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCC--cEEEEeCCHHHHHHhc
Confidence            3577889987 4 44556677776  8999999998877655

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.00  E-value=2  Score=30.13  Aligned_cols=75  Identities=12%  Similarity=0.222  Sum_probs=48.3

Q ss_pred             CCeEEEecCCCchHHHHHHHc-----CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------C
Q 026688           62 GGNIIDASCGSGLFSRIFAKS-----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------F  128 (235)
Q Consensus        62 ~~~vLdiG~G~G~~~~~l~~~-----~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~  128 (235)
                      .++||--|++.| +...+++.     .....|+.++.+++.++.+++....     ..++.++..|+.+..        +
T Consensus         2 MKtilITGas~G-IG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dvs~~~~v~~~~~~i   75 (248)
T d1snya_           2 MNSILITGCNRG-LGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-----HSNIHILEIDLRNFDAYDKLVADI   75 (248)
T ss_dssp             CSEEEESCCSSH-HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-----CTTEEEEECCTTCGGGHHHHHHHH
T ss_pred             cCEEEEeCCCCH-HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc-----CCcEEEEEEEeccHHHHHHHHhhh
Confidence            367888887776 33333321     1234899999988777666554433     347889999997632        1


Q ss_pred             ----CCCceeEEEecccc
Q 026688          129 ----ASSSIDAVHAGAAI  142 (235)
Q Consensus       129 ----~~~~~D~i~~~~~l  142 (235)
                          ..+..|+++.+..+
T Consensus        76 ~~~~~~~~iDiLvnNAg~   93 (248)
T d1snya_          76 EGVTKDQGLNVLFNNAGI   93 (248)
T ss_dssp             HHHHGGGCCSEEEECCCC
T ss_pred             HHHhhcCCcceEEeeccc
Confidence                12568999987654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.82  E-value=6.9  Score=27.18  Aligned_cols=75  Identities=17%  Similarity=0.158  Sum_probs=46.7

Q ss_pred             eEEEecCCCc---hHHHHHHHcCCCceEEEEeC-CHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------CC
Q 026688           64 NIIDASCGSG---LFSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------FA  129 (235)
Q Consensus        64 ~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~-s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~  129 (235)
                      .||--|++.|   ..+..|++.+.  +|...|. ++..++...+.+...    ..++.++..|+.+..          -.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAY----GGQAITFGGDVSKEADVEAMMKTAIDA   76 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH----TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHc----CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3455555554   23344555554  8877765 667777777777655    346778889997632          01


Q ss_pred             CCceeEEEecccccc
Q 026688          130 SSSIDAVHAGAAIHC  144 (235)
Q Consensus       130 ~~~~D~i~~~~~l~~  144 (235)
                      -+..|+++.+....+
T Consensus        77 ~g~iDiLVnnAg~~~   91 (244)
T d1edoa_          77 WGTIDVVVNNAGITR   91 (244)
T ss_dssp             SSCCSEEEECCCCCC
T ss_pred             cCCCCcccccccccc
Confidence            257999998765543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=80.78  E-value=0.66  Score=31.16  Aligned_cols=80  Identities=14%  Similarity=0.238  Sum_probs=41.9

Q ss_pred             CCCeEEEecCCC-chHH-HHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc---CCCCCCceeE
Q 026688           61 LGGNIIDASCGS-GLFS-RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASSSIDA  135 (235)
Q Consensus        61 ~~~~vLdiG~G~-G~~~-~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~  135 (235)
                      .+++||-+|||- |... ..+.+.+ ...++.++.+++.++.+.......+.  .........+..+   +......+|+
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g-~~~i~i~nR~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEG-LKEIKLFNRRDEFFDKALAFAQRVNE--NTDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEECSSTTHHHHHHHHHHHHH--HSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcC-CceEeeeccchHHHHHHHHHHHHHHh--hcCcceEeeecccccchhhhhcccce
Confidence            468999999984 3222 2344444 35888999887666555443221100  0112233333322   1111246799


Q ss_pred             EEeccccc
Q 026688          136 VHAGAAIH  143 (235)
Q Consensus       136 i~~~~~l~  143 (235)
                      |+....+.
T Consensus        94 iIN~Tp~G  101 (182)
T d1vi2a1          94 LTNGTKVG  101 (182)
T ss_dssp             EEECSSTT
T ss_pred             eccccCCc
Confidence            99776554

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.03  E-value=5.5  Score=25.52  Aligned_cols=37  Identities=22%  Similarity=0.186  Sum_probs=24.1

Q ss_pred             CCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHH
Q 026688           62 GGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENML   98 (235)
Q Consensus        62 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~   98 (235)
                      ..+|--+|+|. |.....++....-.++..+|++++..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~   40 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMP   40 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence            56888899875 43333344443346899999987543