Citrus Sinensis ID: 026695

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
MALARLALRNVQQRVSTSSPSLANLHNNLGERSASTIGGVQRQKWSNELLKRFMATAANDEKKQDREVAVTEKRSRLFPRRRGRRGSLWRNNDIPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRIH
cHHHHccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccEEcccEEEEEEEccccccccEEEEEEccEEEEEEEEEccEEEccccEEEEEEEEEEEEEEEEcccccccccEEEEEcccEEEEEcccccccccccEEEEcc
cHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHEHHHccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHccHHHHcHHHHHccccccccEccccccEEEEEEcccccccEEEEEEEccEEEEEcEEEEEEEcccccEEEEEEccccEEEEEEccccccHHHEEEEEcccEEEEEEcccccccccEEEEEEc
MALARLALRNVQqrvstsspslanlhnnlgersastiggvqRQKWSNELLKRFMATAandekkqdREVAVTEKrsrlfprrrgrrgslwrnndipvlaeffpsglgNALMQATENINRIFenlnftpsqlmGWVKEQddcyklrydvpglgkddvkitihdgvltikgehkeeeeessddehwsarsygyyntslalpddakADEIKAELKNGvlniviprtekpkqdvkevrih
MALARLAlrnvqqrvstsspslanlhnnlgersastiggvqrQKWSNELLKRFMataandekkqdrevavtekrsrlfprrrgrrgslwrnndipVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDvpglgkddvkitIHDGvltikgehkeeeeessddehwsARSYGYYNTSLALPDDAKADEIKAELkngvlniviprtekpkqdvkevrih
MALARLALRNVQQRVSTSSPSLANLHNNLGERSASTIGGVQRQKWSNELLKRFMATAANDEKKQDREVAVTEKrsrlfprrrgrrgslwrNNDIPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGehkeeeeessddehWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRIH
****************************************************************************************WRNNDIPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIK******************RSYGYYNTSLALPD****DEIKAELKNGVLNIVI****************
****************************************************************************************WRNNDIPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLT*******************ARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIP***********VRIH
MALARLALR**********PSLANLHNNLGERSASTIGGVQRQKWSNELLKRFMATAA***************RSRLFPRRRGRRGSLWRNNDIPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGE*************WSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEK***********
****************************************************************DREVAVTEKRSRLFPRRRGRRGSLWRNNDIPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRIH
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALARLALRNVQQRVSTSSPSLANLHNNLGERSASTIGGVQRQKWSNELLKRFMATAANDEKKQDREVAVTEKRSRLFPRRRGRRGSLWRNNDIPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRIH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query235 2.2.26 [Sep-21-2011]
Q9SSQ8232 26.5 kDa heat shock prote yes no 0.940 0.952 0.602 8e-75
B7EZJ7219 23.6 kDa heat shock prote yes no 0.612 0.657 0.374 8e-24
P09887181 Small heat shock protein, no no 0.553 0.718 0.395 4e-23
P30222241 Small heat shock protein, N/A no 0.744 0.726 0.365 4e-22
P31170227 25.3 kDa heat shock prote no no 0.412 0.427 0.509 3e-21
P09886232 Small heat shock protein, N/A no 0.625 0.633 0.355 1e-20
Q95661235 Small heat shock protein, N/A no 0.629 0.629 0.369 5e-20
Q84Q77161 17.9 kDa class I heat sho yes no 0.425 0.621 0.425 1e-16
Q10P60240 26.7 kDa heat shock prote no no 0.604 0.591 0.345 2e-16
Q84J50159 17.7 kDa class I heat sho no no 0.425 0.628 0.415 1e-15
>sp|Q9SSQ8|HS26M_ARATH 26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1 Back     alignment and function desciption
 Score =  280 bits (715), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 147/244 (60%), Positives = 186/244 (76%), Gaps = 23/244 (9%)

Query: 1   MALARLALRNVQQRVSTSSPSLANLHNNLGERSASTIGGVQRQKWSNELLKRFMATAAND 60
           MALARLALRN+QQ++S   PSL      +G+     + G +        L RFMAT+A +
Sbjct: 1   MALARLALRNLQQKLS---PSL------MGQSCERGLVGNRHNPMK---LNRFMATSAGE 48

Query: 61  -EKKQDREVAVTEKRS--RLFPRRRGRRGSLWRNND-----IPVLAEFFPSGLGNALMQA 112
            E K + EV+V+EK+S  + FPRRRGR+ SLWRN D      P L EFFP  +GN L+QA
Sbjct: 49  QEDKMNTEVSVSEKKSPRQNFPRRRGRK-SLWRNTDDHGYFTPTLNEFFPPTIGNTLIQA 107

Query: 113 TENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKE 172
           TEN+NRIF+N N  P QLMG VKEQDDCYKLRY+VPGL K+DVKIT++DG+LTIKG+HK 
Sbjct: 108 TENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKA 167

Query: 173 EEEESS--DDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVK 230
           EEE+ S  +DE+WS++SYGYYNTSL+LPDDAK ++IKAELKNGVLN+VIPRTEKPK++V+
Sbjct: 168 EEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKKNVQ 227

Query: 231 EVRI 234
           E+ +
Sbjct: 228 EISV 231

Arabidopsis thaliana (taxid: 3702)
>sp|B7EZJ7|HS23M_ORYSJ 23.6 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP23.6 PE=2 SV=1 Back     alignment and function description
>sp|P09887|HS22C_SOYBN Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1 Back     alignment and function description
>sp|P30222|HS22C_PETHY Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1 Back     alignment and function description
>sp|P31170|HS25P_ARATH 25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1 Back     alignment and function description
>sp|P09886|HS21C_PEA Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1 Back     alignment and function description
>sp|Q95661|HS21C_SOLLC Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1 Back     alignment and function description
>sp|Q84Q77|HS17A_ORYSJ 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1 Back     alignment and function description
>sp|Q10P60|HS26P_ORYSJ 26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1 Back     alignment and function description
>sp|Q84J50|HS177_ORYSJ 17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
297853008232 hypothetical protein ARALYDRAFT_337408 [ 0.944 0.956 0.629 3e-73
15219028232 HSP20-like chaperone [Arabidopsis thalia 0.940 0.952 0.602 5e-73
186490446225 HSP20-like chaperone [Arabidopsis thalia 0.931 0.973 0.598 4e-69
224059176243 predicted protein [Populus trichocarpa] 0.978 0.946 0.604 3e-68
255553171236 small heat-shock protein, putative [Rici 0.974 0.970 0.644 3e-64
225442975233 PREDICTED: 26.5 kDa heat shock protein, 0.957 0.965 0.588 1e-62
356526211225 PREDICTED: 26.5 kDa heat shock protein, 0.923 0.964 0.580 9e-56
255639031225 unknown [Glycine max] 0.923 0.964 0.576 7e-55
356519335212 PREDICTED: LOW QUALITY PROTEIN: 26.5 kDa 0.842 0.933 0.561 1e-53
357468211231 26.5 kDa heat shock protein [Medicago tr 0.919 0.935 0.564 1e-52
>gi|297853008|ref|XP_002894385.1| hypothetical protein ARALYDRAFT_337408 [Arabidopsis lyrata subsp. lyrata] gi|297340227|gb|EFH70644.1| hypothetical protein ARALYDRAFT_337408 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/243 (62%), Positives = 184/243 (75%), Gaps = 21/243 (8%)

Query: 1   MALARLALRNVQQRVSTSSPSLANLHNNLGERSASTIGGVQRQKWSNELLKRFMATAAND 60
           MALARLALRN+QQ++S   PSL      +G+     + G +        L RFMAT+A +
Sbjct: 1   MALARLALRNLQQKLS---PSL------MGQSCERCLVGNRHNPMK---LNRFMATSAGE 48

Query: 61  -EKKQDREVAVTEKRS-RLFPRRRGRRGSLWRNND-----IPVLAEFFPSGLGNALMQAT 113
            E K++ EV+V+EK+S R    RR  R SLWRN D     +P L EFFP  LGNALMQAT
Sbjct: 49  QEDKKNTEVSVSEKKSPRRNFPRRRGRKSLWRNTDDHGYFVPTLNEFFPPTLGNALMQAT 108

Query: 114 ENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEE 173
           ENINRIF+N N  PSQLMG VKEQDDCYKLRY+VPGL KDDVKIT+ DG+LTIKGEHK E
Sbjct: 109 ENINRIFDNFNIRPSQLMGQVKEQDDCYKLRYEVPGLTKDDVKITVDDGILTIKGEHKAE 168

Query: 174 EEESS--DDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKE 231
           EE+ S  +DE+WS++SYGYYNTSL+LPDDAK D+IKAELKNGVLN+VIPRTEKPK+DV+E
Sbjct: 169 EEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVDDIKAELKNGVLNLVIPRTEKPKKDVQE 228

Query: 232 VRI 234
           + +
Sbjct: 229 ISV 231

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15219028|ref|NP_175665.1| HSP20-like chaperone [Arabidopsis thaliana] gi|75313824|sp|Q9SSQ8.1|HS26M_ARATH RecName: Full=26.5 kDa heat shock protein, mitochondrial; Short=AtHsp26.5; Flags: Precursor gi|5903049|gb|AAD55608.1|AC008016_18 Similar to gb|X07187 heat shock protein 21 precursor from Pisum sativum and is a member of the PF|00011 HSP20/alpha crystallin family [Arabidopsis thaliana] gi|38566632|gb|AAR24206.1| At1g52560 [Arabidopsis thaliana] gi|40824092|gb|AAR92344.1| At1g52560 [Arabidopsis thaliana] gi|332194701|gb|AEE32822.1| HSP20-like chaperone [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186490446|ref|NP_001117476.1| HSP20-like chaperone [Arabidopsis thaliana] gi|332194702|gb|AEE32823.1| HSP20-like chaperone [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224059176|ref|XP_002299753.1| predicted protein [Populus trichocarpa] gi|222847011|gb|EEE84558.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255553171|ref|XP_002517628.1| small heat-shock protein, putative [Ricinus communis] gi|223543260|gb|EEF44792.1| small heat-shock protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225442975|ref|XP_002267925.1| PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Vitis vinifera] gi|297743451|emb|CBI36318.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356526211|ref|XP_003531712.1| PREDICTED: 26.5 kDa heat shock protein, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|255639031|gb|ACU19816.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356519335|ref|XP_003528328.1| PREDICTED: LOW QUALITY PROTEIN: 26.5 kDa heat shock protein, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|357468211|ref|XP_003604390.1| 26.5 kDa heat shock protein [Medicago truncatula] gi|355505445|gb|AES86587.1| 26.5 kDa heat shock protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
TAIR|locus:2035079232 AT1G52560 "AT1G52560" [Arabido 0.944 0.956 0.526 1.3e-54
TAIR|locus:2137762227 HSP21 "AT4G27670" [Arabidopsis 0.412 0.427 0.475 2.8e-18
UNIPROTKB|B7EZJ7219 HSP23.6 "23.6 kDa heat shock p 0.531 0.570 0.369 5.8e-18
TAIR|locus:2122649210 HSP23.6-MITO "AT4G25200" [Arab 0.425 0.476 0.383 1.4e-14
UNIPROTKB|Q10P60240 HSP26.7 "26.7 kDa heat shock p 0.531 0.520 0.326 3e-14
UNIPROTKB|Q84Q77161 HSP17.9A "17.9 kDa class I hea 0.429 0.627 0.368 1.6e-13
TAIR|locus:2075256156 HSP17.4 "heat shock protein 17 0.459 0.692 0.333 2.7e-13
UNIPROTKB|Q84J50159 HSP17.7 "17.7 kDa class I heat 0.565 0.836 0.303 4.4e-13
UNIPROTKB|P31673154 HSP17.4 "17.4 kDa class I heat 0.429 0.655 0.359 7.1e-13
UNIPROTKB|Q84Q72161 HSP18.1 "18.1 kDa class I heat 0.429 0.627 0.349 7.1e-13
TAIR|locus:2035079 AT1G52560 "AT1G52560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 128/243 (52%), Positives = 161/243 (66%)

Query:     1 MALARLALRNVQQRVSTSSPSLANLHNNLGERSASTIGGVQRQKWSNELLKRFMATAAND 60
             MALARLALRN+QQ++S   PSL      +G+   S   G+   + +   L RFMAT+A +
Sbjct:     1 MALARLALRNLQQKLS---PSL------MGQ---SCERGLVGNRHNPMKLNRFMATSAGE 48

Query:    61 -EKKQDREVAVTEKXXXXXXXXXXXXXXXX-XNND-----IPVLAEFFPSGLGNALMQAT 113
              E K + EV+V+EK                  N D      P L EFFP  +GN L+QAT
Sbjct:    49 QEDKMNTEVSVSEKKSPRQNFPRRRGRKSLWRNTDDHGYFTPTLNEFFPPTIGNTLIQAT 108

Query:   114 ENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXX 173
             EN+NRIF+N N  P QLMG VKEQDDCYKLRY+VPGL K+DVKIT++DG+LTIKG     
Sbjct:   109 ENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAE 168

Query:   174 XXXXX--XXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKE 231
                        WS++SYGYYNTSL+LPDDAK ++IKAELKNGVLN+VIPRTEKPK++V+E
Sbjct:   169 EEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKKNVQE 228

Query:   232 VRI 234
             + +
Sbjct:   229 ISV 231
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0009408 "response to heat" evidence=IEP;ISS;RCA
GO:0009507 "chloroplast" evidence=ISM
GO:0009644 "response to high light intensity" evidence=IEP;RCA
GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA
GO:0006457 "protein folding" evidence=RCA
GO:0010286 "heat acclimation" evidence=RCA
TAIR|locus:2137762 HSP21 "AT4G27670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B7EZJ7 HSP23.6 "23.6 kDa heat shock protein, mitochondrial" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2122649 HSP23.6-MITO "AT4G25200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q10P60 HSP26.7 "26.7 kDa heat shock protein, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q84Q77 HSP17.9A "17.9 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2075256 HSP17.4 "heat shock protein 17.4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q84J50 HSP17.7 "17.7 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P31673 HSP17.4 "17.4 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q84Q72 HSP18.1 "18.1 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SSQ8HS26M_ARATHNo assigned EC number0.60240.94040.9525yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pg.C_scaffold_1003973
annotation not avaliable (232 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 1e-29
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 1e-28
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 1e-25
cd0647292 cd06472, ACD_ScHsp26_like, Alpha crystallin domain 4e-23
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 2e-21
cd0647193 cd06471, ACD_LpsHSP_like, Group of bacterial prote 4e-21
cd0647090 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain 3e-09
cd0652683 cd06526, metazoan_ACD, Alpha-crystallin domain (AC 1e-07
PRK10743137 PRK10743, PRK10743, heat shock protein IbpA; Provi 0.002
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information 
 Score =  106 bits (266), Expect = 1e-29
 Identities = 35/102 (34%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNT 193
           +KE  D + ++ DVPG   +++K+ + D  + +KG+H++EEE+  D    S RSY  ++ 
Sbjct: 2   IKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEED--DHGLRSERSYRSFSR 59

Query: 194 SLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRIH 235
              LP++A  D++KA LK+GVL + +P+ E P++  + ++I 
Sbjct: 60  KFVLPENADPDKVKASLKDGVLTVTVPKLEPPEKKPRRIQIQ 101

Length = 101
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|182691 PRK10743, PRK10743, heat shock protein IbpA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 235
PRK11597142 heat shock chaperone IbpB; Provisional 99.95
PRK10743137 heat shock protein IbpA; Provisional 99.95
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.95
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.92
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.91
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.91
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.9
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.88
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.87
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.87
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.87
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.85
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.85
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.85
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.84
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.83
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.81
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.81
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.73
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.72
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.68
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.55
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.29
cd0646384 p23_like Proteins containing this p23_like domain 99.0
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 98.95
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.78
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 98.34
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 98.08
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 98.08
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 98.01
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 97.74
cd0648887 p23_melusin_like p23_like domain similar to the C- 97.65
cd0646892 p23_CacyBP p23_like domain found in proteins simil 97.65
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 97.56
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 96.99
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 96.9
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 96.51
KOG1309 196 consensus Suppressor of G2 allele of skp1 [Signal 96.4
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 96.25
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 95.92
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 93.76
KOG3158180 consensus HSP90 co-chaperone p23 [Posttranslationa 85.66
PF13349166 DUF4097: Domain of unknown function (DUF4097) 81.9
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information 
Probab=99.95  E-value=1.6e-27  Score=194.26  Aligned_cols=128  Identities=17%  Similarity=0.220  Sum_probs=102.2

Q ss_pred             ccCCC-chhHHHHHHHHHHHHhhhcCCCCCCcccceEE-eCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccC
Q 026695          100 FFPSG-LGNALMQATENINRIFENLNFTPSQLMGWVKE-QDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEES  177 (235)
Q Consensus       100 ~~P~~-~~~~~~~~~~~mdr~f~~~~~~~~~p~~dI~e-~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~  177 (235)
                      ++||. .+..|+++++.|++.+    .+...|++||+| +++.|+|.++|||++++||+|++++|.|+|+|+++.+.  +
T Consensus         6 ~~~~~~~~~~~d~l~~~~~~~~----~~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~--~   79 (142)
T PRK11597          6 LSPLLRQWIGFDKLANALQNAG----ESQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPE--K   79 (142)
T ss_pred             cchhhcccccHHHHHHHhcccC----ccCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEcccc--C
Confidence            44532 2334555555554332    244557788998 57899999999999999999999999999999976432  4


Q ss_pred             CCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCEEEEEEeccCCCCCCceEEecC
Q 026695          178 SDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRIH  235 (235)
Q Consensus       178 ~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~~~~~~~~~I~Ie  235 (235)
                      +.+++++||.+|+|.|+|.||++||.+  +|+|+||||+|+|||..++..+.++|+|+
T Consensus        80 ~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~nGVL~I~lPK~~~~~~~~rkI~I~  135 (142)
T PRK11597         80 EVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVNGLLHIDLIRNEPEAIAPQRIAIS  135 (142)
T ss_pred             CCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcCCEEEEEEeccCccccCCcEEEEC
Confidence            567999999999999999999999998  79999999999999986555557788875

>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13349 DUF4097: Domain of unknown function (DUF4097) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
3gla_A100 Crystal Structure Of The Hspa From Xanthomonas Axon 3e-09
3gt6_A103 Crystal Structure Of The Hspa From Xanthomonas Axon 3e-09
1gme_A151 Crystal Structure And Assembly Of An Eukaryotic Sma 3e-07
2byu_A101 Negative Stain Em Reconstruction Of M.Tuberculosis 5e-05
2h50_A93 Multiple Distinct Assemblies Reveal Conformational 5e-05
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 100 Back     alignment and structure 
Iteration: 1

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNT 193
           +KE+ + + L  D+PG+    +++ +  G+L+I+G                 R YG ++ 
Sbjct: 9   IKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHR 68
Query: 194 SLALPDDAKADEIKAELKNGVLNIVIPR 221
             ALPD A AD I A  +NGVL I IP+
Sbjct: 69  RFALPDSADADGITAAGRNGVLEIRIPK 96
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 103 Back     alignment and structure
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat Shock Protein Length = 151 Back     alignment and structure
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer Length = 101 Back     alignment and structure
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational Flexibility In The Small Heat Shock Protein Hsp26 Length = 93 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
1gme_A151 Heat shock protein 16.9B; small heat shock protein 5e-35
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 6e-34
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 2e-32
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 4e-30
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 1e-18
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 2e-18
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 6e-18
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 1e-17
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 4e-16
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 6e-13
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 1e-11
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
 Score =  121 bits (305), Expect = 5e-35
 Identities = 39/102 (38%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGEHKEEEEESSDDEHWSARSYGYYN 192
            KE  + +  + D+PG+ K++VK+ + DG VL + GE  +E+E+ +D  H   RS G + 
Sbjct: 48  WKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFV 107

Query: 193 TSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 234
               L +DAK +E+KA L+NGVL + +P+ E  K +VK ++I
Sbjct: 108 RRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.95
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.94
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.94
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.94
4fei_A102 Heat shock protein-related protein; stress respons 99.93
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.91
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.9
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.88
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.88
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.87
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.86
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.8
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 98.93
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 98.93
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 98.15
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 98.12
3igf_A374 ALL4481 protein; two-domained protein consisting o 97.93
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 97.68
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 97.61
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 97.41
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 97.39
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 97.3
2o30_A131 Nuclear movement protein; MCSG, structural genomic 97.16
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 97.09
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 96.89
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 96.82
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 96.77
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 81.2
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
Probab=99.95  E-value=4.7e-27  Score=178.50  Aligned_cols=98  Identities=33%  Similarity=0.543  Sum_probs=90.9

Q ss_pred             CCCcccceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCce
Q 026695          127 PSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEI  206 (235)
Q Consensus       127 ~~~p~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I  206 (235)
                      .|.|++||+|++++|+|.++|||++++||+|+++++.|+|+|+++.+...+...++.+||.+|.|.|+|.||.+||.++|
T Consensus         2 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i   81 (100)
T 3gla_A            2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGI   81 (100)
T ss_dssp             CSCCCEEEEECSSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSC
T ss_pred             CccCcEEEEECCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHe
Confidence            46788899999999999999999999999999999999999999987766667889999999999999999999999999


Q ss_pred             EEEEeCCEEEEEEeccCC
Q 026695          207 KAELKNGVLNIVIPRTEK  224 (235)
Q Consensus       207 ~A~~~nGVL~I~lPK~~~  224 (235)
                      +|+|+||||+|++||.++
T Consensus        82 ~A~~~~GvL~I~~pK~~~   99 (100)
T 3gla_A           82 TAAGRNGVLEIRIPKRPA   99 (100)
T ss_dssp             EEEEETTEEEEEEEBC--
T ss_pred             EEEEeCCEEEEEEecCCC
Confidence            999999999999999875
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 235
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 5e-22
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 1e-20
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 86.4 bits (213), Expect = 5e-22
 Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 7/128 (5%)

Query: 114 ENINRIFENLNFTPSQLMGW------VKEQDDCYKLRYDVPGLGKDDVKITIH-DGVLTI 166
           +    I   ++   S+   +       KE  + +  + D+PG+ K++VK+ +    VL +
Sbjct: 21  DTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVV 80

Query: 167 KGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPK 226
            GE  +E+E+ +D  H   RS G +     L +DAK +E+KA L+NGVL + +P+ E  K
Sbjct: 81  SGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKK 140

Query: 227 QDVKEVRI 234
            +VK ++I
Sbjct: 141 PEVKAIQI 148
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.94
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.92
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 98.2
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 97.32
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 97.19
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 96.65
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 96.18
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.94  E-value=1.2e-27  Score=192.80  Aligned_cols=108  Identities=35%  Similarity=0.580  Sum_probs=99.1

Q ss_pred             CCcccceEEeCcEEEEEEEeCCCCCCcEEEEEEC-CEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCce
Q 026695          128 SQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHD-GVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEI  206 (235)
Q Consensus       128 ~~p~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~-~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I  206 (235)
                      +.|.+||.|++++|+|+++|||++++||+|++++ +.|+|+|+++.+...++..++..|+.+|.|+|+|.||.+||.++|
T Consensus        41 ~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i  120 (150)
T d1gmea_          41 ANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEV  120 (150)
T ss_dssp             GGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGC
T ss_pred             CCCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeecee
Confidence            4577899999999999999999999999999986 589999998887766678889999999999999999999999999


Q ss_pred             EEEEeCCEEEEEEeccCCCCCCceEEecC
Q 026695          207 KAELKNGVLNIVIPRTEKPKQDVKEVRIH  235 (235)
Q Consensus       207 ~A~~~nGVL~I~lPK~~~~~~~~~~I~Ie  235 (235)
                      +|+|+||||+|+|||.++++++.+.|+|+
T Consensus       121 ~A~~~nGvL~I~lpK~~~~~~~~~~I~I~  149 (150)
T d1gmea_         121 KAGLENGVLTVTVPKAEVKKPEVKAIQIS  149 (150)
T ss_dssp             EEEEETTEEEEEEECCCCCTTCCCCCCCC
T ss_pred             EEEEECCEEEEEEEcCCcCCCCceEEecc
Confidence            99999999999999998877778888885
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure