Citrus Sinensis ID: 026703

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVSTLYNRNLLLYKLVFYRCYFGGSYMPVVVAREIRHF
ccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcc
ccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHcccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHccccccHcccccccHHHHHHHHHHHHHHHHHHcccccEEccHHHHHccEEEEEcccccHHHHHHHcccHEHHHcccccccHHHHHHHHHHHHHHHcccccHHHcccHEEEEEEEEccc
mqgipdgagiRSTVWKLLLVylppdrglwpseLAKKRSQykhfkddllvnpseitrrldkstiyeseewkcessgflsrseithdehplslgkssiwnqffqdseIMEQIDRDvkrthpdmhffsgdssfatSNQEALKNILIVFAklnpgiryvQGMNEILAPLyyvfksdpdeefsgfsfafgarsfgglrTYYTVSTLYNRNLLLYKLVFYRcyfggsymPVVVAREIRHF
mqgipdgagiRSTVWKLLLVYLPPDRGLWPSELAKKRsqykhfkddllvnpseitrrldkstiyeseewkcesSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVSTLYNRNLLLYKLVFYRCYFGGSYMPVVVAREIRHF
MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEfsgfsfafgarsfggLRTYYTVSTLYNRNLLLYKLVFYRCYFGGSYMPVVVAREIRHF
********GIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKC********************GKSSIWNQFFQDSEIMEQI************FF**********QEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVSTLYNRNLLLYKLVFYRCYFGGSYMPVVVARE****
*QGI*D*AGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRR****************************************NQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVSTLYNRNLLLYKLVFYRCYFGGSYMPVVVAREIRHF
MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVSTLYNRNLLLYKLVFYRCYFGGSYMPVVVAREIRHF
**GIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDK*************************EHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVSTLYNRNLLLYKLVFYRCYFGGSYMPVVVAREIRHF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVSTLYNRNLLLYKLVFYRCYFGGSYMPVVVAREIRHF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query234 2.2.26 [Sep-21-2011]
Q92609 795 TBC1 domain family member yes no 0.572 0.168 0.320 4e-19
Q9URY3 619 TBC domain-containing pro yes no 0.461 0.174 0.390 2e-18
Q80XQ2 815 TBC1 domain family member yes no 0.572 0.164 0.314 5e-18
Q9NVG8 400 TBC1 domain family member no no 0.474 0.277 0.343 5e-18
Q54VM3 1173 TBC1 domain family member no no 0.679 0.135 0.305 1e-17
Q8R3D1 400 TBC1 domain family member no no 0.474 0.277 0.335 3e-17
Q54TA5 1016 TBC1 domain family member no no 0.581 0.133 0.293 6e-12
Q8TBP0 767 TBC1 domain family member no no 0.226 0.069 0.375 9e-05
Q6FWI1 745 GTPase-activating protein yes no 0.307 0.096 0.279 0.0005
>sp|Q92609|TBCD5_HUMAN TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1 Back     alignment and function desciption
 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 28/162 (17%)

Query: 11  RSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWK 70
           RS  WKL L  LP D+  W S + + R+ Y + K+  + NP ++  + D           
Sbjct: 87  RSICWKLFLCVLPQDKSQWISRIEELRAWYSNIKEIHITNPRKVVGQQDLMI-------- 138

Query: 71  CESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSF 130
                           +PLS  + S+WN+FFQD E+   I++DVKRT P+M FF  ++  
Sbjct: 139 ---------------NNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQENV- 182

Query: 131 ATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSD 172
               ++ L ++L  +A+ N  + Y QGM+E+LAP+ +V   D
Sbjct: 183 ----RKILTDVLFCYARENEQLLYKQGMHELLAPIVFVLHCD 220
May act as a GTPase-activating protein for Rab family protein(s).
Homo sapiens (taxid: 9606)
>sp|Q9URY3|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4 SV=4 Back     alignment and function description
>sp|Q80XQ2|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2 Back     alignment and function description
>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3 Back     alignment and function description
>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1 Back     alignment and function description
>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1 Back     alignment and function description
>sp|Q54TA5|TBC5B_DICDI TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum GN=tbc1d5B PE=3 SV=1 Back     alignment and function description
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
255554050 468 conserved hypothetical protein [Ricinus 0.777 0.388 0.807 1e-83
224060367 356 predicted protein [Populus trichocarpa] 0.777 0.511 0.796 6e-82
357462717 432 TBC1 domain family member [Medicago trun 0.777 0.421 0.769 9e-81
224140847 341 predicted protein [Populus trichocarpa] 0.777 0.533 0.796 6e-80
449442333 446 PREDICTED: TBC1 domain family member 13- 0.764 0.401 0.791 2e-79
224128968 339 predicted protein [Populus trichocarpa] 0.777 0.536 0.791 4e-79
225433604 437 PREDICTED: TBC1 domain family member 13 0.773 0.414 0.796 2e-78
356512467 443 PREDICTED: TBC1 domain family member 13- 0.743 0.392 0.76 8e-76
82621142 387 RabGAP/TBC domain-containing protein-lik 0.747 0.452 0.754 2e-75
356528306 449 PREDICTED: TBC1 domain family member 13- 0.730 0.380 0.761 6e-74
>gi|255554050|ref|XP_002518065.1| conserved hypothetical protein [Ricinus communis] gi|223542661|gb|EEF44198.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 147/182 (80%), Positives = 165/182 (90%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPDGAGIRSTVWKLLL YLP DR LW SELAKKRSQY+HFK++LL+NPSEI RRL+KS
Sbjct: 139 QGIPDGAGIRSTVWKLLLGYLPTDRSLWSSELAKKRSQYRHFKEELLMNPSEIARRLEKS 198

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
           T  E++E KCE+ G LSRSEITH EHPLSLGK+SIWNQFFQD+EI+EQIDRDVKRTHPDM
Sbjct: 199 TGCENDEPKCENRGVLSRSEITHGEHPLSLGKTSIWNQFFQDTEIIEQIDRDVKRTHPDM 258

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFS 181
           HFF GDSSFA SNQ+AL+NILIVFAKLNPGIRYVQGMNEILAPL+YVF++DPDEE +  +
Sbjct: 259 HFFCGDSSFAKSNQDALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFRNDPDEEMAACA 318

Query: 182 FA 183
            A
Sbjct: 319 EA 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224060367|ref|XP_002300164.1| predicted protein [Populus trichocarpa] gi|222847422|gb|EEE84969.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357462717|ref|XP_003601640.1| TBC1 domain family member [Medicago truncatula] gi|355490688|gb|AES71891.1| TBC1 domain family member [Medicago truncatula] Back     alignment and taxonomy information
>gi|224140847|ref|XP_002323790.1| predicted protein [Populus trichocarpa] gi|222866792|gb|EEF03923.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449442333|ref|XP_004138936.1| PREDICTED: TBC1 domain family member 13-like [Cucumis sativus] gi|449505611|ref|XP_004162521.1| PREDICTED: TBC1 domain family member 13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224128968|ref|XP_002328857.1| predicted protein [Populus trichocarpa] gi|222839287|gb|EEE77624.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225433604|ref|XP_002271213.1| PREDICTED: TBC1 domain family member 13 [Vitis vinifera] gi|298205157|emb|CBI17216.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512467|ref|XP_003524940.1| PREDICTED: TBC1 domain family member 13-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|82621142|gb|ABB86259.1| RabGAP/TBC domain-containing protein-like [Solanum tuberosum] Back     alignment and taxonomy information
>gi|356528306|ref|XP_003532745.1| PREDICTED: TBC1 domain family member 13-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
TAIR|locus:2119435449 AT4G13730 [Arabidopsis thalian 0.743 0.387 0.729 1.3e-68
DICTYBASE|DDB_G0269052 604 DDB_G0269052 [Dictyostelium di 0.388 0.150 0.510 3.3e-33
FB|FBgn0035916 403 GAPsec "GTPase activating prot 0.508 0.295 0.382 2.6e-31
ZFIN|ZDB-GENE-080204-86 414 tbc1d13 "TBC1 domain family, m 0.230 0.130 0.444 3e-30
UNIPROTKB|E1BXI8399 TBC1D13 "Uncharacterized prote 0.175 0.102 0.634 7.1e-30
UNIPROTKB|Q9NVG8400 TBC1D13 "TBC1 domain family me 0.175 0.102 0.634 1e-28
RGD|1591937400 Tbc1d13 "TBC1 domain family, m 0.175 0.102 0.634 1e-28
MGI|MGI:2385326400 Tbc1d13 "TBC1 domain family, m 0.175 0.102 0.634 2.6e-28
UNIPROTKB|F1RR65400 TBC1D13 "Uncharacterized prote 0.175 0.102 0.634 3.1e-28
UNIPROTKB|E2RQB4400 TBC1D13 "Uncharacterized prote 0.175 0.102 0.634 1.4e-27
TAIR|locus:2119435 AT4G13730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 127/174 (72%), Positives = 153/174 (87%)

Query:     2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
             QG+PD AGIRS VWKLLL YL PDR LW SELAKKRSQYK FK++LL+NPSE+TR++DKS
Sbjct:   123 QGLPDDAGIRSIVWKLLLDYLSPDRSLWSSELAKKRSQYKQFKEELLMNPSEVTRKMDKS 182

Query:    62 TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
                +S + K ES G LSRSEITH++HPLSLG +S+WN FF+D+E++EQI+RDV RTHPDM
Sbjct:   183 KGGDSNDPKIESPGALSRSEITHEDHPLSLGTTSLWNNFFKDTEVLEQIERDVMRTHPDM 242

Query:   122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDE 175
             HFFSGDS+ A SNQ+ALKNIL +FAKLNPGIRYVQGMNEILAP++Y+FK+DPD+
Sbjct:   243 HFFSGDSAVAKSNQDALKNILTIFAKLNPGIRYVQGMNEILAPIFYIFKNDPDK 296
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
DICTYBASE|DDB_G0269052 DDB_G0269052 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0035916 GAPsec "GTPase activating protein, SECIS-dependent read-through" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-86 tbc1d13 "TBC1 domain family, member 13" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXI8 TBC1D13 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NVG8 TBC1D13 "TBC1 domain family member 13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1591937 Tbc1d13 "TBC1 domain family, member 13" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2385326 Tbc1d13 "TBC1 domain family, member 13" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR65 TBC1D13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQB4 TBC1D13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.3438.1
hypothetical protein (356 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 3e-16
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 6e-16
COG5210 496 COG5210, COG5210, GTPase-activating protein [Gener 1e-09
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score = 74.3 bits (183), Expect = 3e-16
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 102 QDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161
            D  I+ QI++D++RT P+  FF          QE+L+ +L  +A  NP + Y QGMN +
Sbjct: 42  DDKSIVHQIEKDLRRTFPEHSFFQDKEG---PGQESLRRVLKAYALYNPEVGYCQGMNFL 98

Query: 162 LAPLYYVFKSDPD 174
            APL  V + + D
Sbjct: 99  AAPLLLVMEDEED 111

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 234
KOG4567370 consensus GTPase-activating protein [General funct 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 99.97
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 99.97
KOG2058 436 consensus Ypt/Rab GTPase activating protein [Intra 99.96
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.96
KOG2224 781 consensus Uncharacterized conserved protein, conta 99.95
COG5210 496 GTPase-activating protein [General function predic 99.93
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.89
KOG2223586 consensus Uncharacterized conserved protein, conta 99.87
KOG2197 488 consensus Ypt/Rab-specific GTPase-activating prote 99.81
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.78
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.65
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.64
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.63
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.62
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.53
KOG2595 395 consensus Predicted GTPase activator protein [Sign 98.92
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 98.7
KOG1648813 consensus Uncharacterized conserved protein, conta 97.68
KOG2224 781 consensus Uncharacterized conserved protein, conta 94.68
KOG3636 669 consensus Uncharacterized conserved protein, conta 90.19
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-45  Score=304.41  Aligned_cols=213  Identities=45%  Similarity=0.731  Sum_probs=174.7

Q ss_pred             CCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCcccccc
Q 026703            2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE   81 (234)
Q Consensus         2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (234)
                      +|+|++.++|+.+|++||||+|++.+.|.+.++++|..|.+++++....|.....                ..+..  ++
T Consensus        34 ~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~----------------~~~v~--~~   95 (370)
T KOG4567|consen   34 YGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDN----------------SKKVD--SN   95 (370)
T ss_pred             cCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCcccccc----------------ccccc--cC
Confidence            6999877899999999999999999999999999999999999998876653111                01111  11


Q ss_pred             cCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcch----------------------hHHHHHH
Q 026703           82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFAT----------------------SNQEALK  139 (234)
Q Consensus        82 ~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~----------------------~~~~~l~  139 (234)
                      ....++||+.+++|.|+++|++.++..||++||.||.|+.++|+.....++                      -+.....
T Consensus        96 D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~e  175 (370)
T KOG4567|consen   96 DTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAE  175 (370)
T ss_pred             cccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHH
Confidence            256789999999999999999999999999999999999999998766552                      1122357


Q ss_pred             HHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhHHHHHhHHhHhhccccch---------hhhH------
Q 026703          140 NILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVST---------LYNR------  204 (234)
Q Consensus       140 ~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~daf~~f~~l~~~~~~~~---------~~~~------  204 (234)
                      |||++||+.||+||||||||+|+|||++|+..+++..+..++|+|||+||..||..++..+         ++.-      
T Consensus       176 rilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~~  255 (370)
T KOG4567|consen  176 RILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLS  255 (370)
T ss_pred             HHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999997666555         2221      


Q ss_pred             -HHHHHHHHHHH---------hhhhhhhhHHHHhhhcc
Q 026703          205 -NLLLYKLVFYR---------CYFGGSYMPVVVAREIR  232 (234)
Q Consensus       205 -~~~~~~~~~~~---------~~f~~~w~~~l~~rel~  232 (234)
                       .++-.|..+.+         .+|++||+.+||+.|||
T Consensus       256 ~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~  293 (370)
T KOG4567|consen  256 ELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFP  293 (370)
T ss_pred             HHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCC
Confidence             11222222222         18999999999999998

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
3dzx_A 346 Crystal Structure Of The Rabgap Domain Of Human Tbc 4e-04
1fkm_A 396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 4e-04
2g77_A 410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 4e-04
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure 
Iteration: 1

 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 109 QIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYV 168
           QI  D+ RT+P +  F          QE  + IL ++A  +P   YVQG+N+++ P + V
Sbjct: 108 QIHIDIPRTNPLIPLFQQPLV-----QEIFERILFIWAIRHPASGYVQGINDLVTPFFVV 162
Query: 169 FKSDPDEE 176
           F S+  EE
Sbjct: 163 FLSEYVEE 170
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 4e-31
2qfz_A 345 TBC1 domain family member 22A; RAB-GAP, GTPase act 3e-30
2qq8_A 334 TBC1 domain family member 14; structural genomics 6e-13
3qye_A 331 TBC1 domain family member 1; rabgap, RAB, myocytes 2e-11
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 2e-10
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  117 bits (293), Expect = 4e-31
 Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 55/170 (32%)

Query: 3   GIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKST 62
           GIP     R  VWKLL+ YLP +       L +KR +Y+                     
Sbjct: 33  GIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSL------------------ 72

Query: 63  IYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMH 122
                                         K +  +Q  +D     QI+ D+ RT+P + 
Sbjct: 73  ------------------------------KHTFSDQHSRDIPTWHQIEIDIPRTNPHIP 102

Query: 123 FFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSD 172
            +   S      Q +L+ IL ++A  +P   YVQG+N+++ P +  F ++
Sbjct: 103 LYQFKS-----VQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTE 147
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 99.97
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 99.97
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 99.95
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 99.79
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=8.8e-37  Score=271.65  Aligned_cols=176  Identities=26%  Similarity=0.359  Sum_probs=145.2

Q ss_pred             CCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCcccccc
Q 026703            2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE   81 (234)
Q Consensus         2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (234)
                      +|||+.  +|+.||++|||++|.+.+.|...+++++..|.++++++.....                             
T Consensus        32 ~GIP~~--lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~-----------------------------   80 (396)
T 1fkm_A           32 NGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQH-----------------------------   80 (396)
T ss_dssp             TCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSC-----------------------------
T ss_pred             cCCCHH--HHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccC-----------------------------
Confidence            699999  9999999999999999999999999999999999988753100                             


Q ss_pred             cCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHH
Q 026703           82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI  161 (234)
Q Consensus        82 ~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i  161 (234)
                                         ..+.+..++|++||.||+|++++|+.+     .+++.|+|||.+|+.+||++|||||||+|
T Consensus        81 -------------------~~~~~~~~qI~~Dv~RT~p~~~~F~~~-----~~~~~L~rIL~aya~~np~iGY~QGmn~i  136 (396)
T 1fkm_A           81 -------------------SRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQRILYLWAIRHPASGYVQGINDL  136 (396)
T ss_dssp             -------------------STHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHHHHHHHHHHHCTTTCSCTTHHHH
T ss_pred             -------------------cccHHHHHHHHHHhhhhCCCcccccCc-----hHHHHHHHHHHHHHHHCCCCCcccCcHHH
Confidence                               123567899999999999999999986     89999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCc------------------ccccchhhHHHHHhHHhHhhcc----ccch-hhhHHHHHHHHHHHHh--
Q 026703          162 LAPLYYVFKSDPD------------------EEFSGFSFAFGARSFGGLRTYY----TVST-LYNRNLLLYKLVFYRC--  216 (234)
Q Consensus       162 ~a~ll~~~~~e~~------------------~~~~~~~E~daf~~f~~l~~~~----~~~~-~~~~~~~~~~~~~~~~--  216 (234)
                      ||+||+++..+..                  ..+...+|++|||||+.||+.+    .+++ ++...+.+++.++...  
T Consensus       137 ~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP  216 (396)
T 1fkm_A          137 VTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDA  216 (396)
T ss_dssp             HHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Confidence            9999998854321                  1122345999999999998754    4433 5555666666665543  


Q ss_pred             --------------hhhhhhhHHHHhhhcc
Q 026703          217 --------------YFGGSYMPVVVAREIR  232 (234)
Q Consensus       217 --------------~f~~~w~~~l~~rel~  232 (234)
                                    +|+++|++++|+||||
T Consensus       217 ~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p  246 (396)
T 1fkm_A          217 DLYNHFQNEHVEFIQFAFRWMNCLLMREFQ  246 (396)
T ss_dssp             HHHHHHHHTTCCTHHHHHHHHHTTTGGGSC
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHhhCC
Confidence                          7999999999999998
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 234
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 8e-20
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.9 bits (201), Expect = 8e-20
 Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 55/175 (31%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
            GIP     R  VWKLL+ YLP +       L +KR +Y+                    
Sbjct: 31  NGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKH--------------- 73

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
                                            +  +Q  +D     QI+ D+ RT+P +
Sbjct: 74  ---------------------------------TFSDQHSRDIPTWHQIEIDIPRTNPHI 100

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEE 176
             +   S      Q +L+ IL ++A  +P   YVQG+N+++ P +  F ++    
Sbjct: 101 PLYQFKS-----VQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPP 150

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-35  Score=238.18  Aligned_cols=143  Identities=28%  Similarity=0.390  Sum_probs=123.1

Q ss_pred             CCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCcccccc
Q 026703            2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE   81 (234)
Q Consensus         2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (234)
                      +|||+.  +|+.||++|||++|.+.+.|...+.++++.|..+.+.......                             
T Consensus        31 ~Gip~~--lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~-----------------------------   79 (194)
T d1fkma1          31 NGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQH-----------------------------   79 (194)
T ss_dssp             TCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSC-----------------------------
T ss_pred             cCCChH--HHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhccc-----------------------------
Confidence            799999  9999999999999999999999999999999988876543211                             


Q ss_pred             cCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHH
Q 026703           82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI  161 (234)
Q Consensus        82 ~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i  161 (234)
                                         ..+.+..++|++||.||+|++++|..+     .+++.|+|||.+||.+||++|||||||+|
T Consensus        80 -------------------~~~~~~~~~I~~Dv~RT~~~~~~f~~~-----~~~~~L~rIL~~ya~~np~~gY~QGmn~i  135 (194)
T d1fkma1          80 -------------------SRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQRILYLWAIRHPASGYVQGINDL  135 (194)
T ss_dssp             -------------------STHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHHHHHHHHHHHCTTTCSCTTHHHH
T ss_pred             -------------------ccchHHHHHHHHHHHhcCCcccccccc-----hhHHHHHHHHHHHHHHCCCCCeeecchHH
Confidence                               124567899999999999999999887     89999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCccc------------------ccchhhHHHHHhHHhHhhccccc
Q 026703          162 LAPLYYVFKSDPDEE------------------FSGFSFAFGARSFGGLRTYYTVS  199 (234)
Q Consensus       162 ~a~ll~~~~~e~~~~------------------~~~~~E~daf~~f~~l~~~~~~~  199 (234)
                      ||||++++..+....                  .....|+||||||+.+|+.+...
T Consensus       136 ~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~  191 (194)
T d1fkma1         136 VTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDN  191 (194)
T ss_dssp             HHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhcc
Confidence            999999997654321                  23467999999999999876543