Citrus Sinensis ID: 026716

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGERPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Secondary Structure (PSIPRED)
cccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEcccEEEEEEEccccccccEEEEEEEEEEEEEEEEEcccccccccEEEEEcHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccHcccccccccccccccHHHHccccccccccccccEEEEEcccccccEEEEEEcccEEEEEEEEcccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDGREAMVasggvsgpyyiqqhrgafsgshsatqsglmqtppgfrsssnlniptqpnvgstfavepkhvnfghnmsvpsgvplsdpvkkkrgrprkyapdgqvslglsplparpkrspasdsqalkrsrgrppgtgrKQQLATLGEwmnssagiafaphvisigvgerpRVVCILsgrgtvssvtlrqpatsvptvtYEVEALCLYLFLFWKkkihqknfhfctlpflclllvp
Flexible Loop (DISEMBL)
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFghnmsvpsgvplsdpvKKKRgrprkyapdgqvslglsplparpkrspasdsqalkrsrgrppgtgRKQQLATLGEWMNSSAGIAFAPHVISIGVGERPRVVCILSgrgtvssvtlrqpatsvptvtYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Low Complexity Region (SEG)
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGERPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Disordered region (IsUnstruct)
**********************************************************************************************************************************************TLGEWMNSSAGIAFAPHVISIGVGERPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLV*
Disordered Region (DISOPRED)
*************************************************************************************************AP**************************************************SSAGIAFAPHVISIGVGERPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLF*********FHFCTLPFLCLLLVP
Disordered Region (DISEMBL)
*********SGGVSGPYYIQQHRGA*************QTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSD************APDGQVSLGLSPL****************************QQLATLGEWMNSSAGIAFAPHVISIGVGERPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Disordered Region (DISPRO)
*****************Y**QHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTF***************************************QVSLGL************************************LGEWMNSSAGIAFAPHVISIGVGERPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGERPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
255537455	347	DNA binding protein, putative [Ricinus c	0.867	0.585	0.588	3e-59
225426407	346	PREDICTED: uncharacterized protein LOC10	0.858	0.580	0.606	8e-59
224053919	343	predicted protein [Populus trichocarpa]	0.846	0.577	0.594	3e-53
224074919	346	predicted protein [Populus trichocarpa]	0.867	0.586	0.575	6e-53
356540448	352	PREDICTED: uncharacterized protein LOC10	0.841	0.559	0.549	2e-50
297742528	309	unnamed protein product [Vitis vinifera]	0.735	0.556	0.556	1e-48
356528260	352	PREDICTED: uncharacterized protein LOC10	0.833	0.553	0.5	6e-47
356513399	352	PREDICTED: uncharacterized protein LOC10	0.833	0.553	0.5	1e-46
356497236	357	PREDICTED: uncharacterized protein LOC10	0.841	0.551	0.510	1e-44
449452330	343	PREDICTED: uncharacterized protein LOC10	0.867	0.591	0.539	7e-44

>gi|255537455|ref|XP_002509794.1| DNA binding protein, putative [Ricinus communis] gi|223549693|gb|EEF51181.1| DNA binding protein, putative [Ricinus communis]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 157/226 (69%), Gaps = 23/226 (10%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV-- 58
           MDGREAM  + G S PYYI +  G       +       +PPGFR  +N N+    N   
Sbjct: 1   MDGREAMALASG-STPYYIHRGGGVGGSGSGSQAG-GFHSPPGFRPLANPNLLAHSNTRP 58

Query: 59  ---GSTFAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPAR 113
              GS+F++EP ++NF H  N++VPSG+P+ +PVKKKRGRPRKYAPDGQVSLGLSPLP +
Sbjct: 59  GSSGSSFSIEPSNINFVHGMNVAVPSGLPVGEPVKKKRGRPRKYAPDGQVSLGLSPLPVK 118

Query: 114 PKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE------ 167
           PK S   D  + KR+RGRPPGTGRKQQLA LGEWMNSSAGIAF+PHVI IGVGE      
Sbjct: 119 PKPSSGQDPLSPKRARGRPPGTGRKQQLALLGEWMNSSAGIAFSPHVIRIGVGEDIVAKV 178

Query: 168 ------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 205
                 RPR +CILSG GTVSSVTLRQPA+S PT+T+E   E LCL
Sbjct: 179 LSFAQQRPRALCILSGTGTVSSVTLRQPASSGPTLTFEGRFEILCL 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426407|ref|XP_002273061.1| PREDICTED: uncharacterized protein LOC100249560 [Vitis vinifera]

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 139/229 (60%), Positives = 153/229 (66%), Gaps = 28/229 (12%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAF---SGSHSATQSGLMQTPPGFRSSSNLNIPTQPN 57
           MDGREAM  SG  S PYYI  HRG     S S S   SG +  PPGFR  SN  IP Q N
Sbjct: 1   MDGREAMALSG--SPPYYI--HRGVVGSASLSGSGIHSGGLHAPPGFRPLSNPGIPVQSN 56

Query: 58  V-----GSTFAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPL 110
           V     G TF+V+    NF H  NM+VPSGVP ++PVK+KRGRPRKY PDG VSLGLSP+
Sbjct: 57  VRNNSVGQTFSVDHSQTNFPHGFNMAVPSGVPPAEPVKRKRGRPRKYGPDGNVSLGLSPM 116

Query: 111 PARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE--- 167
            ARP     S +   KR RGRPPGTGRKQQLATLGEWMNSSAG+AFAPHVIS+ VGE   
Sbjct: 117 SARPSLGSGSVTPTQKRGRGRPPGTGRKQQLATLGEWMNSSAGLAFAPHVISMAVGEDIA 176

Query: 168 ---------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 205
                    RPR +CILS  GTVS+VTLRQP +S  TVTYE   E LCL
Sbjct: 177 TRILSFSQQRPRALCILSASGTVSAVTLRQPTSSSGTVTYEGRFEILCL 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053919|ref|XP_002298038.1| predicted protein [Populus trichocarpa] gi|222845296|gb|EEE82843.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 154/227 (67%), Gaps = 29/227 (12%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGA-FSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV- 58
           MDGREAM  S G S PY+I  HRG+ F G    +Q G+   PPGFRS SN  +  Q NV 
Sbjct: 1   MDGREAMPFSSG-SSPYHI--HRGSGFLGPGYGSQHGVSHPPPGFRSLSNPQLAAQSNVR 57

Query: 59  -GST---FAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPA 112
            GST   F++EP  VNFGH  NM+  S V + +PVKKKRGRPRKY   GQVSLGLSPLP 
Sbjct: 58  SGSTVPAFSIEPPDVNFGHGINMAATSEVQVGEPVKKKRGRPRKYGLVGQVSLGLSPLPN 117

Query: 113 RPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE----- 167
           +PK S   DS   KR+RGRPPG+GRKQQLATLG    +SAG+AF+PHVISI VGE     
Sbjct: 118 KPKPSSGEDSSTSKRNRGRPPGSGRKQQLATLG----NSAGVAFSPHVISIEVGEDIVSK 173

Query: 168 -------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 205
                  RPR VCILSG GTVSSVTLRQPA+S  ++TYE   E LCL
Sbjct: 174 LLSFSQQRPRAVCILSGTGTVSSVTLRQPASSGSSITYEGRFEILCL 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074919|ref|XP_002304491.1| predicted protein [Populus trichocarpa] gi|222841923|gb|EEE79470.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 130/226 (57%), Positives = 152/226 (67%), Gaps = 23/226 (10%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV-- 58
           MDGRE M    G S  YYI +  G    S S +Q   +  P GFRS S+ ++ +Q NV  
Sbjct: 1   MDGRETMAFPSGSSS-YYIHRGSGILG-SGSGSQHDPLHPPTGFRSLSSPHLASQSNVRP 58

Query: 59  GST---FAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPAR 113
           GS+   F++EP + NFGH  NM+  S V + +PVKKKRGRPRKY  DGQVSLGLS  P +
Sbjct: 59  GSSAPAFSIEPPNANFGHGINMAATSEVQVGEPVKKKRGRPRKYGLDGQVSLGLSSFPDK 118

Query: 114 PKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE------ 167
            K S   DS   KR+RGRPPG+GRKQQLATLGEWMNSSAG+AF+PHV+SIGVGE      
Sbjct: 119 AKPSSGEDSSTSKRNRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHVVSIGVGEDIVSKL 178

Query: 168 ------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 205
                 RPR VCILSG GTVSSVTLRQPA+S P +TYE   E LCL
Sbjct: 179 LSFSQQRPRAVCILSGTGTVSSVTLRQPASSGPPITYEGRFEILCL 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540448|ref|XP_003538701.1| PREDICTED: uncharacterized protein LOC100790569 [Glycine max]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/231 (54%), Positives = 152/231 (65%), Gaps = 34/231 (14%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSA---TQSGLMQTPPGFRSSSNLNIPTQPN 57
           MDGRE M   GG S PYY+Q HRG   G       TQSG  Q P GFR+ SN++      
Sbjct: 1   MDGREGMAFPGG-SAPYYMQ-HRGGGVGGSVPGTGTQSGGFQPPSGFRALSNVS------ 52

Query: 58  VGSTFAVE--PKHVNFGHNMSVPS------GVPLS-DPVKKKRGRPRKYAPDGQVSLGLS 108
            GS F VE  P+H +F H ++  S      GVP S +PVKKKRGRPRKY PDG VSL LS
Sbjct: 53  PGSAFKVESQPQHASFSHGINTGSSPDGGSGVPSSGEPVKKKRGRPRKYGPDGSVSLMLS 112

Query: 109 PLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE- 167
           P+ A    +P S + + KR RGRPPG+GRKQQLATLGEWMN+SAG+AF+PHVI++GVGE 
Sbjct: 113 PMSATANSTPGSGTSSEKRPRGRPPGSGRKQQLATLGEWMNNSAGLAFSPHVITVGVGED 172

Query: 168 -----------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 205
                      RPR VCIL+G GT+SSVTLRQPA++  +VTYE   + LCL
Sbjct: 173 IVAKLLSFARQRPRAVCILTGTGTISSVTLRQPASTSISVTYEGRFQILCL 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742528|emb|CBI34677.3| unnamed protein product [Vitis vinifera]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/221 (55%), Positives = 137/221 (61%), Gaps = 49/221 (22%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGS 60
           MDGREAM  SG  S PYYI  HRG      SA+ SG                        
Sbjct: 1   MDGREAMALSG--SPPYYI--HRGVVG---SASLSG------------------------ 29

Query: 61  TFAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSP 118
             +V+    NF H  NM+VPSGVP ++PVK+KRGRPRKY PDG VSLGLSP+ ARP    
Sbjct: 30  --SVDHSQTNFPHGFNMAVPSGVPPAEPVKRKRGRPRKYGPDGNVSLGLSPMSARPSLGS 87

Query: 119 ASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE----------- 167
            S +   KR RGRPPGTGRKQQLATLGEWMNSSAG+AFAPHVIS+ VGE           
Sbjct: 88  GSVTPTQKRGRGRPPGTGRKQQLATLGEWMNSSAGLAFAPHVISMAVGEDIATRILSFSQ 147

Query: 168 -RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 205
            RPR +CILS  GTVS+VTLRQP +S  TVTYE   E LCL
Sbjct: 148 QRPRALCILSASGTVSAVTLRQPTSSSGTVTYEGRFEILCL 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528260|ref|XP_003532722.1| PREDICTED: uncharacterized protein LOC100813888 [Glycine max]

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/236 (50%), Positives = 144/236 (61%), Gaps = 41/236 (17%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGS 60
           MDGREAM  SG  S PYY+  HR    GS S       +  PGFR  SN  I  + N   
Sbjct: 1   MDGREAMAFSGS-SAPYYM--HRVGIGGSASG-----FEPAPGFRPLSNTGIQAESNARG 52

Query: 61  T-------------FAVEP--KHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSL 105
                         F+VEP   H NF H + +  G P S+PVKKKRGRPRKY PDG VSL
Sbjct: 53  GQGQGGGSVGSSSPFSVEPPQGHTNFNHGIGI--GAPSSEPVKKKRGRPRKYGPDGAVSL 110

Query: 106 GLSPL--PARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISI 163
            LSP+  PA   +  +  + + K++RGRPPG+GRKQQLA LGEWMNSSAG+AF+PHV++I
Sbjct: 111 RLSPMSAPANSTQDASETTPSQKKARGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTI 170

Query: 164 GVGE------------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 205
           GVGE            R R +CI+SG GTVSSVTLRQPA++  +VT+E   + LCL
Sbjct: 171 GVGEDIVAKLLSLSQQRSRALCIMSGTGTVSSVTLRQPASTNASVTFEGRFQILCL 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513399|ref|XP_003525401.1| PREDICTED: uncharacterized protein LOC100798706 [Glycine max]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/236 (50%), Positives = 142/236 (60%), Gaps = 41/236 (17%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV-- 58
           MDGREAM  S G S PYY+  HR               Q  PGFR  SN  I  + N   
Sbjct: 1   MDGREAMAFSDG-SAPYYM--HR-----VGVGGSGSGFQPAPGFRPLSNTGIQAESNARG 52

Query: 59  -----------GSTFAVEP--KHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSL 105
                       S F+VEP   H NF H + +  G P  +PVKKKRGRPRKY PDG VSL
Sbjct: 53  GQGQGGGSVGSNSPFSVEPPQGHANFNHGIGI--GAPSREPVKKKRGRPRKYGPDGAVSL 110

Query: 106 GLSPL--PARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISI 163
            LSP+  PA   +  +  + + K++RGRPPG+GRKQQLA LGEWMNSSAG+AF+PHVI+I
Sbjct: 111 RLSPMSAPANSTQDASETTPSQKKARGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVITI 170

Query: 164 GVGE------------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 205
           GVGE            RPR +CI+SG GTVSSVTLRQPA++  +VT+E   + LCL
Sbjct: 171 GVGEDIVAKLLSLSQQRPRALCIMSGTGTVSSVTLRQPASTNASVTFEGRFQILCL 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497236|ref|XP_003517468.1| PREDICTED: uncharacterized protein LOC100795781 [Glycine max]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 146/239 (61%), Gaps = 42/239 (17%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSA---TQSGLMQTPPGFRSSSNLNIPTQPN 57
           MDGRE M   GG S PYY+Q HRG           TQSG  Q P GFR+ SN++      
Sbjct: 1   MDGREGMAFPGG-SVPYYMQ-HRGGGVSGSGPGTGTQSGGFQPPSGFRALSNVS------ 52

Query: 58  VGSTFAVE----------PKHVNFGHNMSVPSGVPLS-------DPVKKKRGRPRKYAPD 100
            GS F VE          P+H +F H +++ S            +PVKKKRGRPRKY PD
Sbjct: 53  PGSAFKVESHSYSHSQSQPQHASFSHGINIGSSPDGGGGGPSSGEPVKKKRGRPRKYGPD 112

Query: 101 GQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHV 160
           G VSL LSP+ A    +P S + + KR RGRPPG+GRKQQLATLGEWMNSSAG+AF+PHV
Sbjct: 113 GSVSLMLSPMSATASSTPGSGTSSEKRPRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHV 172

Query: 161 ISIGVGE------------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 205
           I++GV E            RPR VCIL+G GT+SSVTLRQPA++   VTYE   + LCL
Sbjct: 173 ITVGVDEDIVAKLLSFARQRPRAVCILTGTGTISSVTLRQPASTSIGVTYEGRFQILCL 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452330|ref|XP_004143912.1| PREDICTED: uncharacterized protein LOC101219973 [Cucumis sativus]

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 148/226 (65%), Gaps = 23/226 (10%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPN--- 57
           MDGRE M  SGG S  YYI +  G          +G   +P  FR  +N  + +  N   
Sbjct: 1   MDGREGMALSGG-SASYYIHRGGGVGGSGSGLPTAGSHASPV-FRPMANQGVLSHSNLRG 58

Query: 58  --VGSTFAVEPKHVNF--GHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPAR 113
             VGST+ VEP H N+  G  ++V +GV  S+PVKKKRGRPRKYAPDGQVSLGLSP+ A 
Sbjct: 59  NSVGSTYTVEPSHSNYLRGMGINVSAGVNSSEPVKKKRGRPRKYAPDGQVSLGLSPMSAG 118

Query: 114 PKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE------ 167
            K +P S+S   +R RGRPPG+GRKQQLA LG+WMN+SAG+AFAPHVI +G GE      
Sbjct: 119 SKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGDWMNNSAGLAFAPHVIHVGAGEDIVAKV 178

Query: 168 ------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 205
                 RPR VC+LSG GTVSSVTLRQPA++  +VTYE   + LCL
Sbjct: 179 LSFAQQRPRAVCVLSGNGTVSSVTLRQPASTGVSVTYEGHFQILCL 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.504	0.312	0.637	1.6e-49
TAIR|locus:2031306	361	AT1G63480 [Arabidopsis thalian	0.799	0.518	0.475	4.4e-36
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.803	0.540	0.416	2.3e-30
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.807	0.533	0.410	7.3e-27
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.474	0.316	0.480	7.8e-23
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.688	0.398	0.278	4.7e-15
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.329	0.175	0.442	1.5e-14
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.410	0.229	0.411	2.1e-14
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.316	0.191	0.448	2e-12
TAIR|locus:2084983	411	AT3G04590 [Arabidopsis thalian	0.559	0.318	0.347	8.4e-11

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 86/135 (63%), Positives = 101/135 (74%)

Query:    82 PLSDP-VKKKRGRPRKYAPDGQVSLGLSPLPARPKRSP----ASDSQALKRSRGRPPGTG 136
             P   P VKKKRGRPRKY PDGQVSLGLSP+P   K+S      SD  A KR+RGRPPGTG
Sbjct:    98 PSEQPMVKKKRGRPRKYVPDGQVSLGLSPMPCVSKKSKDSSSMSDPNAPKRARGRPPGTG 157

Query:   137 RKQQLATLGEWMNSSAGIAFAPHVISIGVGE------------RPRVVCILSGRGTVSSV 184
             RKQ+LA LGEWMN+SAG+AFAPHVIS+G GE            RPR +CI+SG GTVSSV
Sbjct:   158 RKQRLANLGEWMNTSAGLAFAPHVISVGSGEDIVSKVLSFSQKRPRALCIMSGTGTVSSV 217

Query:   185 TLRQPATSVPTVTYE 199
             TLR+PA++ P++T+E
Sbjct:   218 TLREPASTTPSLTFE 232

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2031306 AT1G63480 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 108/227 (47%), Positives = 130/227 (57%)

Query:     1 MDGREAMVASGGVSGPYYIQQHRGAFSG-SHSATQSGLMQTPP--GFRSSSNLNI--PTQ 55
             MDGREAM   G  S  YY+Q  RGAF+  + S   SGL   PP  G R  SN NI  P  
Sbjct:     1 MDGREAMAFPGSHS-QYYLQ--RGAFTNLAPSQVASGLHAPPPHTGLRPMSNPNIHHPQA 57

Query:    56 PNVGSTFAVEPKHVNFGHNMSV--------PSGVPLSDP-VKKKRGRPRKYAPDGQVSLG 106
              N G  F+     ++ G   S         P   P  +P VK+KRGRPRKY   G+    
Sbjct:    58 NNPGPPFSDFGHTIHMGVVSSASDADVQPPPPPPPPEEPMVKRKRGRPRKY---GE---- 110

Query:   107 LSPLPARPKR--SPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIG 164
               P+ +   R  SP SD    KR+RGRPPGTGRKQ+LA LGEWMN+SAG+AFAPHVISIG
Sbjct:   111 --PMVSNKSRDSSPMSDPNEPKRARGRPPGTGRKQRLANLGEWMNTSAGLAFAPHVISIG 168

Query:   165 VGE------------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE 199
              GE            RPR +CI+SG GT+SSVTL +P ++   +TYE
Sbjct:   169 AGEDIAAKVLSFSQQRPRALCIMSGTGTISSVTLCKPGSTDRHLTYE 215

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 95/228 (41%), Positives = 122/228 (53%)

Query:     1 MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPT------ 54
             MD R+AM  SG  SG YYI  HRG  SGS   T  G  Q   G R   N N P       
Sbjct:     1 MDRRDAMGLSG--SGSYYI--HRG-LSGSGPPTFHGSPQQQQGLRHLPNQNSPFGSGSTG 55

Query:    55 --QPNV-G----STFA----VEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQV 103
                P++ G    +T A      P H+  G NM  P   P   P+K+KRGRPRKY  DG V
Sbjct:    56 FGSPSLHGDPSLATAAGGAGALPHHI--GVNMIAPPPPPSETPMKRKRGRPRKYGQDGSV 113

Query:   104 SLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISI 163
             SL LS        S  + + + KR RGRPPG+G+KQ++A++GE M SS+G++F PHVI++
Sbjct:   114 SLALSSSSV----STITPNNSNKRGRGRPPGSGKKQRMASVGELMPSSSGMSFTPHVIAV 169

Query:   164 GVGER------------PRVVCILSGRGTVSSVTLRQPATSVPTVTYE 199
              +GE             PR +C+LS  G VS+ TL QP+ S   + YE
Sbjct:   170 SIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSASPGAIKYE 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 94/229 (41%), Positives = 119/229 (51%)

Query:     1 MDGREAMVASGGVSGPYYIQQHRGA-FSGSHSATQSGLMQTPPGFRSSSNLNIP------ 53
             MD R+AM  SG  SG YYIQ  RG   SG              GF   +N   P      
Sbjct:     1 MDRRDAMALSG--SGSYYIQ--RGIPGSGPPPPQTQPTFHGSQGFHHFTNSISPFGSNPN 56

Query:    54 TQPNVG--ST-FAVEPKHVNFG--HNMSVPSGVPLSDP-----VKKKRGRPRKYAPDG-Q 102
               PN G  ST F   P  V+     + +  +G  ++ P     VK+KRGRPRKY  DG  
Sbjct:    57 PNPNPGGVSTGFVSPPLPVDSSPADSSAAAAGALVAPPSGDTSVKRKRGRPRKYGQDGGS 116

Query:   103 VSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVIS 162
             VSL LSP  +    SP S+    KR RGRPPG+G+KQ+L+++GE M SS G++F PHVI 
Sbjct:   117 VSLALSPSISNV--SPNSN----KRGRGRPPGSGKKQRLSSIGEMMPSSTGMSFTPHVIV 170

Query:   163 IGVGER------------PRVVCILSGRGTVSSVTLRQPATSVPTVTYE 199
             + +GE             PR +C+LS  G VS+ TL QPA S  T+ YE
Sbjct:   171 VSIGEDIASKVISFSHQGPRAICVLSASGAVSTATLLQPAPSHGTIIYE 219

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 63/131 (48%), Positives = 81/131 (61%)

Query:    84 SDPVKKKRGRPRKYAPD-GQVSLGLSP-LPARPKRSPASDSQALKRSRGRPPGTGRKQ-Q 140
             S+PVKK+RGRPRKY PD G++SLGL+P  P+     P+S     ++ RGRPPG+  K+ +
Sbjct:    93 SEPVKKRRGRPRKYGPDSGEMSLGLNPGAPSFTVSQPSSGGDGGEKKRGRPPGSSSKRLK 152

Query:   141 LATLGEWMNSSAGIAFAPHVISIGVGER------------PRVVCILSGRGTVSSVTLRQ 188
             L  LG     S GI F PHV+++  GE             PR VC+LS  G +S+VTLRQ
Sbjct:   153 LQALG-----STGIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVTLRQ 207

Query:   189 PATSVPTVTYE 199
              ATS  TVTYE
Sbjct:   208 SATSGGTVTYE 218

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
 Identities = 51/183 (27%), Positives = 80/183 (43%)

Query:     1 MDGREAMVASGGVSGPYYI-QQHRGAFS-GSHSATQSGLMQTPPGFRSSSNLNIP--TQP 56
             M+ RE    +  ++  + + QQH  A S G +S      M  PP   + +   +P  T P
Sbjct:     1 MEEREGTNINNNITSSFGLKQQHEAAASDGGYS------MDPPPRPENPNPFLVPPTTVP 54

Query:    57 NVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKR 116
                +  A   ++     ++++P+    ++ +KKKRGRPRKY PDG + + LSP+P     
Sbjct:    55 AAATVAAAVTENAATPFSLTMPTENTSAEQLKKKRGRPRKYNPDGTLVVTLSPMPISSSV 114

Query:   117 SPASDSQALKRSRGRPPGTG--RKQQLATL----------GEWMNSSAGIAFAPHVISIG 164
                S+    KR RGR       +K Q+             G       G  F PHV+ + 
Sbjct:   115 PLTSEFPPRKRGRGRGKSNRWLKKSQMFQFDRSPVDTNLAGVGTADFVGANFTPHVLIVN 174

Query:   165 VGE 167
              GE
Sbjct:   175 AGE 177

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 42/95 (44%), Positives = 53/95 (55%)

Query:   119 ASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGER---------- 168
             +SD  A KR+RGRPPG+G+KQ L  LG     + G+ F PHVI +  GE           
Sbjct:   190 SSDPPA-KRNRGRPPGSGKKQ-LDALG----GTGGVGFTPHVIEVKTGEDIATKILAFTN 243

Query:   169 --PRVVCILSGRGTVSSVTLRQPATSVPTVTYEVE 201
               PR +CILS  G V++V LRQ   S PT T + E
Sbjct:   244 QGPRAICILSATGAVTNVMLRQANNSNPTGTVKYE 278

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
 Identities = 42/102 (41%), Positives = 54/102 (52%)

Query:    41 PPGFRS-SSNLNI-PT-QPNVGSTFA-VEPKHVNFGHNMSVPSGVP-LSDPVKKKRGRPR 95
             PPG+   S N N+ P  Q +  S  A V+P   N     S+   V   S  +KKKRGRPR
Sbjct:    27 PPGYPPRSENPNLFPVGQSSTSSAAAAVKPSE-NVAPPFSLTMPVENSSSELKKKRGRPR 85

Query:    96 KYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGR 137
             KY PDG +++ LSP+P        S+  + KR RGR  G GR
Sbjct:    86 KYNPDGSLAVTLSPMPISSSVPLTSEFGSRKRGRGRGRGRGR 127

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 44/98 (44%), Positives = 56/98 (57%)

Query:    87 VKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQA-----------------LKRSR 129
             VKKKRGRPRKY PDG ++LGL+P    P  S AS+S                   +KR+R
Sbjct:   101 VKKKRGRPRKYTPDGSIALGLAP--TSPLLSAASNSYGEGGVGDSGGNGNSVDPPVKRNR 158

Query:   130 GRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE 167
             GRPPG+ +KQ L  LG     ++G+ F PHVI +  GE
Sbjct:   159 GRPPGSSKKQ-LDALG----GTSGVGFTPHVIEVNTGE 191

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2084983 AT3G04590 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 8.4e-11, P = 8.4e-11
 Identities = 57/164 (34%), Positives = 78/164 (47%)

Query:    55 QPNVGST-FAVEPKHVNFGHNMSVPSGVPLS--DPVKKKRGRPRKYAPDGQVSLGLSPLP 111
             QPN GS+  AV P      H  SVPS    +  +PVK+KRGRPRKY    Q +L    L 
Sbjct:    77 QPNDGSSSLAVYP------H--SVPSSAVTAPMEPVKRKRGRPRKYVTPEQ-ALAAKKLA 127

Query:   112 ARPKRSPASDSQALKRSRGRP----PGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE 167
             +    S A   + L    G       G+ +K QL ++G+      G  F PH+++I  GE
Sbjct:   128 SSASSSSAKQRRELAAVTGGTVSTNSGSSKKSQLGSVGK-----TGQCFTPHIVNIAPGE 182

Query:   168 ------------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE 199
                             +C+LS  GT+S+ +LRQPA S   + YE
Sbjct:   183 DVVQKIMMFANQSKHELCVLSASGTISNASLRQPAPSGGNLPYE 226

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.8978.1 hypothetical protein (349 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	234
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	6e-04

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 15/59 (25%)

Query: 156 FAPHVISIGVGE------------RPRVVCILSGRGTVSSVTLRQP---ATSVPTVTYE 199
             PHV+ +  GE            R     +LSG G VS+VTLRQP   A S   VT E
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLE 59

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	98.57
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.56
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.51
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	90.35
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	86.33
PF13546	273	DDE_5: DDE superfamily endonuclease	82.9

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=98.57  E-value=3.8e-08  Score=78.34  Aligned_cols=56  Identities=25%  Similarity=0.218  Sum_probs=47.6

Q ss_pred             ceeEEEEEcCCC------------CceeEEEecCCCceeEEEEcCCC--CCCCceEEE--EEeEeeeccccc
Q 026716          156 FAPHVISIGVGE------------RPRVVCILSGRGTVSSVTLRQPA--TSVPTVTYE--VEALCLYLFLFW  211 (234)
Q Consensus       156 ftPHVItV~~GE------------g~raICILSA~G~VSnVTLRQP~--ssggtvTyE--FEILSLSGSflp  211 (234)
                      |+++++.+.+||            .....|++|+.|++++|+|++++  ....+.+||  |||+||+|++.+
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~   72 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISP   72 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEEC
Confidence            789999999999            34667888999999999999974  334567788  999999999997

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.56  E-value=0.0008  Score=36.29  Aligned_cols=13  Identities=69%  Similarity=1.063  Sum_probs=4.4

Q ss_pred             cccCCCCCCCCCC
Q 026716           88 KKKRGRPRKYAPD  100 (234)
Q Consensus        88 KkKRGRPRKYgpd  100 (234)
                      +||||||+|+..+
T Consensus         1 ~r~RGRP~k~~~~   13 (13)
T PF02178_consen    1 KRKRGRPRKNAKK   13 (13)
T ss_dssp             S--SS--TT----
T ss_pred             CCcCCCCccccCC
Confidence            6899999998653

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.51  E-value=0.0013  Score=41.51  Aligned_cols=15  Identities=60%  Similarity=0.933  Sum_probs=13.2

Q ss_pred             cccCCCCCCCCCCCC
Q 026716           88 KKKRGRPRKYAPDGQ  102 (234)
Q Consensus        88 KkKRGRPRKYgpdg~  102 (234)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999998764

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=90.35  E-value=0.84  Score=38.76  Aligned_cols=56  Identities=16%  Similarity=0.198  Sum_probs=41.3

Q ss_pred             eEEEEEcCCC------------CceeEEEecCCCceeEEEEcCCCCCCC---ceEEE--EEeEeeeccccccC
Q 026716          158 PHVISIGVGE------------RPRVVCILSGRGTVSSVTLRQPATSVP---TVTYE--VEALCLYLFLFWKK  213 (234)
Q Consensus       158 PHVItV~~GE------------g~raICILSA~G~VSnVTLRQP~ssgg---tvTyE--FEILSLSGSflp~~  213 (234)
                      =.++-+..||            ..-...|.++-|++++++|+-=+-...   ++++.  ||||||.|.+-.+.
T Consensus        11 ~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~   83 (141)
T COG1661          11 VIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD   83 (141)
T ss_pred             EEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC
Confidence            3567778888            223348999999999999987543222   33333  99999999998887

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=86.33  E-value=0.25  Score=44.15  Aligned_cols=12  Identities=67%  Similarity=1.052  Sum_probs=10.3

Q ss_pred             cccccCCCCCCC
Q 026716           86 PVKKKRGRPRKY   97 (234)
Q Consensus        86 ~~KkKRGRPRKY   97 (234)
                      -.|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            489999999964

>PF13546 DDE_5: DDE superfamily endonuclease

Probab=82.90  E-value=0.72  Score=40.47  Aligned_cols=16  Identities=56%  Similarity=0.951  Sum_probs=12.2

Q ss_pred             CcccccCCCCCCCCCC
Q 026716           85 DPVKKKRGRPRKYAPD  100 (234)
Q Consensus        85 ~~~KkKRGRPRKYgpd  100 (234)
                      .+..+|||||||||.-
T Consensus       228 ~~~~~~rGRPr~~g~~  243 (273)
T PF13546_consen  228 PPPPPKRGRPRKYGRR  243 (273)
T ss_pred             cccCCCCCCCCCCCCc
Confidence            3455559999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	98.87
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	98.84
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	98.42
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	98.41
3htn_A	149	Putative DNA binding protein; DUF269 family protei	97.99
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	96.75
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	95.77
4i95_A	142	Putative uncharacterized protein; lipocalin-like d	83.96

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=98.87  E-value=3.4e-09  Score=86.84  Aligned_cols=61  Identities=18%  Similarity=0.175  Sum_probs=54.5

Q ss_pred             CCCCCceeEEEEEcCCC-------------CceeEEEecCCCceeEEEEcCCCCCCCceEEE--EEeEeeecccccc
Q 026716          151 SAGIAFAPHVISIGVGE-------------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCLYLFLFWK  212 (234)
Q Consensus       151 s~g~~ftPHVItV~~GE-------------g~raICILSA~G~VSnVTLRQP~ssggtvTyE--FEILSLSGSflp~  212 (234)
                      +....+++|+|++.+||             +-++.|||++.|++++|+||+++... +++|+  ||||||+|++.+.
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~   88 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT   88 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC
Confidence            55678999999999999             67789999999999999999998765 67888  9999999999873

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=98.84  E-value=3e-09  Score=85.98  Aligned_cols=56  Identities=21%  Similarity=0.211  Sum_probs=50.8

Q ss_pred             ceeEEEEEcCCC-------------CceeEEEecCCCceeEEEEcCCCCCCCceEEE--EEeEeeecccccc
Q 026716          156 FAPHVISIGVGE-------------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCLYLFLFWK  212 (234)
Q Consensus       156 ftPHVItV~~GE-------------g~raICILSA~G~VSnVTLRQP~ssggtvTyE--FEILSLSGSflp~  212 (234)
                      |++|+|++.+||             +-++.||+++.|++++|+||+++... +++|+  ||||||+|++.+.
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~   72 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ   72 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC
Confidence            789999999999             66789999999999999999998754 67788  9999999999884

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=98.42  E-value=1.3e-07  Score=76.27  Aligned_cols=55  Identities=18%  Similarity=0.117  Sum_probs=46.8

Q ss_pred             eeEEEEEcCCC-------------CceeEEEecCCCceeEEEEcCCCCCC---CceEEE--EEeEeeecccccc
Q 026716          157 APHVISIGVGE-------------RPRVVCILSGRGTVSSVTLRQPATSV---PTVTYE--VEALCLYLFLFWK  212 (234)
Q Consensus       157 tPHVItV~~GE-------------g~raICILSA~G~VSnVTLRQP~ssg---gtvTyE--FEILSLSGSflp~  212 (234)
                      ++|+|++.+||             +-++-|| ++.|++++|+||+++...   .+++++  ||||||+|++.+.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~v-s~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~   82 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHI-SAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMK   82 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEE-EEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEE-EEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECC
Confidence            58999999999             4556666 999999999999987665   257777  9999999999985

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=98.41  E-value=1.4e-07  Score=75.90  Aligned_cols=55  Identities=15%  Similarity=0.138  Sum_probs=45.2

Q ss_pred             eeEEEEEcCCC-------------CceeEEEecCCCceeEEEEcCCCCCCC---ceEEE--EEeEeeecccccc
Q 026716          157 APHVISIGVGE-------------RPRVVCILSGRGTVSSVTLRQPATSVP---TVTYE--VEALCLYLFLFWK  212 (234)
Q Consensus       157 tPHVItV~~GE-------------g~raICILSA~G~VSnVTLRQP~ssgg---tvTyE--FEILSLSGSflp~  212 (234)
                      ++|+|++.+||             +-++-| +++.|++++|+||+++....   .+++|  ||||||+|++.+.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~-vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~   82 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAI-INGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLK   82 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEE-EEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEE-EEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECC
Confidence            69999999999             444444 49999999999999865542   46666  9999999999985

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=97.99  E-value=4e-06  Score=68.21  Aligned_cols=56  Identities=18%  Similarity=0.139  Sum_probs=45.1

Q ss_pred             eeEEEEEcCCC------------CceeEEEecCCCceeEEEEcCCCCCC---CceEEE--EEeEeeecccccc
Q 026716          157 APHVISIGVGE------------RPRVVCILSGRGTVSSVTLRQPATSV---PTVTYE--VEALCLYLFLFWK  212 (234)
Q Consensus       157 tPHVItV~~GE------------g~raICILSA~G~VSnVTLRQP~ssg---gtvTyE--FEILSLSGSflp~  212 (234)
                      +.+++.+.+||            .....|++++.|++++|+||+++...   ..++++  |||+||+|++.+.
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~   88 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSM   88 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEcc
Confidence            68999999999            23444555999999999999975432   256777  9999999999985

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=96.75  E-value=0.00049  Score=42.37  Aligned_cols=16  Identities=50%  Similarity=0.814  Sum_probs=14.4

Q ss_pred             hcccCCCCCCCCCCcc
Q 026716          124 ALKRSRGRPPGTGRKQ  139 (234)
Q Consensus       124 ~~KR~RGRP~GSknK~  139 (234)
                      ..||+||||.|||||.
T Consensus         3 tpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             SCCCCSSCCTTCCCCS
T ss_pred             CCcCCCCCcCcccccC
Confidence            4799999999999994

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=95.77  E-value=0.011  Score=47.59  Aligned_cols=55  Identities=20%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             eEEEEEcCCC------------CceeEEEecCCCceeEEEEcCCCCCCC---ceEEE-EEeEeeecccccc
Q 026716          158 PHVISIGVGE------------RPRVVCILSGRGTVSSVTLRQPATSVP---TVTYE-VEALCLYLFLFWK  212 (234)
Q Consensus       158 PHVItV~~GE------------g~raICILSA~G~VSnVTLRQP~ssgg---tvTyE-FEILSLSGSflp~  212 (234)
                      -.++.+.+||            ....-+++++-|++++++|+-.+....   ..+++ |||+||+|+..+.
T Consensus        14 ~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~~~Ei~sl~Gtis~~   84 (147)
T 3hwu_A           14 GYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNVEMANMTGSIAWK   84 (147)
T ss_dssp             EEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             EEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEecCcEEEEEEEEEEcC
Confidence            3789999999            223334559999999999985432221   34566 9999999999874

>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A

Probab=83.96  E-value=1.1  Score=37.05  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=27.9

Q ss_pred             eeEEEecCCCceeEEEEcCCCCCCCceEEE--EEeEe
Q 026716          170 RVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALC  204 (234)
Q Consensus       170 raICILSA~G~VSnVTLRQP~ssggtvTyE--FEILS  204 (234)
                      ..+=|||..|++.|+++++  .++.++|.+  |||.|
T Consensus        36 n~lKIlSdDgtF~Ni~m~~--~~~aiIt~~GtY~~~S   70 (142)
T 4i95_A           36 NTFKVLSDDGRIVNFTIRP--GTDAIITGYGTYRQIS   70 (142)
T ss_dssp             EEEEEECTTSEEEEEECCT--TSCCEEEEEEEEEEEE
T ss_pred             ccEEEEcCCCcEEEEEEec--CCCcEEEEeEEEEecC
Confidence            5789999999999999994  467777765  99887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	234
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	98.08
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	97.52

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.08  E-value=2.9e-06  Score=66.20  Aligned_cols=60  Identities=18%  Similarity=0.175  Sum_probs=52.0

Q ss_pred             CCCceeEEEEEcCCC-------------CceeEEEecCCCceeEEEEcCCCCCCCceEEE--EEeEeeeccccccC
Q 026716          153 GIAFAPHVISIGVGE-------------RPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCLYLFLFWKK  213 (234)
Q Consensus       153 g~~ftPHVItV~~GE-------------g~raICILSA~G~VSnVTLRQP~ssggtvTyE--FEILSLSGSflp~~  213 (234)
                      ++..+-+++.+.+||             +-++.||+++-|++++|+|+++.... ..+++  |||+||+|++.+.+
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~~-~~~~~g~~Ei~sl~G~I~~~~   77 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELTG   77 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETTE
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCCC-cEEecCcEEEEEEEEEeccCC
Confidence            467899999999999             66899999999999999999987544 45677  99999999997654

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.52  E-value=2e-05  Score=60.82  Aligned_cols=57  Identities=16%  Similarity=0.108  Sum_probs=44.4

Q ss_pred             eeEEEEEcCCC------------CceeEEEecCCCceeEEEEcCCCC---CCCceEEE--EEeEeeeccccccC
Q 026716          157 APHVISIGVGE------------RPRVVCILSGRGTVSSVTLRQPAT---SVPTVTYE--VEALCLYLFLFWKK  213 (234)
Q Consensus       157 tPHVItV~~GE------------g~raICILSA~G~VSnVTLRQP~s---sggtvTyE--FEILSLSGSflp~~  213 (234)
                      +-+++.+.+||            .....|++++-|.+++|+|+.-..   ......++  |||+||+|++...+
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~   83 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKD   83 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEET
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCC
Confidence            67899999999            344568999999999999995332   22344555  99999999997654