Citrus Sinensis ID: 026723

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
MLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
cccccccccccccccccHHHHHHHHHHHHHcccccccEEEEccccccEEEEEccccccEEEEEHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHccccccccccc
cHHHHHHcccEccHHHHHHHHHHHHHHHHHccccccEEEEEccccccEEEEcccccccEEEEEcHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHcccccccccccc
mllenigtsvlvsknqlpELHQLMTEAAEILNleapdlyvrqspvpnaytlaisgkkpFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANiltlgaytipgigGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLaggcpsladQLNVDAFLEQArsydkassspvgwyIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
mllenigtsvlvsknqLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSydkassspvgWYIRNAqtrqlshpLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
MLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
*********VLVS**QLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKA*SSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASL*************
ML*****TSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDY****************
MLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQA*********PVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
MLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMK*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query234 2.2.26 [Sep-21-2011]
Q8PSE5294 Protease HtpX homolog 2 O yes no 0.662 0.527 0.305 6e-12
Q8TP15294 Protease HtpX homolog 2 O yes no 0.662 0.527 0.288 2e-11
Q2RKK7299 Protease HtpX homolog OS= yes no 0.619 0.484 0.286 2e-10
Q3SW84307 Protease HtpX homolog OS= yes no 0.324 0.247 0.381 2e-08
B5YKM8282 Protease HtpX homolog OS= yes no 0.324 0.269 0.368 7e-08
Q8THH5286 Protease HtpX homolog 1 O no no 0.388 0.318 0.336 1e-07
A1AZW2292 Protease HtpX homolog OS= yes no 0.329 0.263 0.363 1e-07
A0QRJ0295 Protease HtpX homolog OS= no no 0.636 0.505 0.262 1e-07
B3QED3324 Protease HtpX homolog OS= yes no 0.418 0.302 0.342 2e-07
Q8U1S0289 Protease HtpX homolog OS= yes no 0.683 0.553 0.257 2e-07
>sp|Q8PSE5|HTPX2_METMA Protease HtpX homolog 2 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=htpX2 PE=3 SV=1 Back     alignment and function desciption
 Score = 71.2 bits (173), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 25/180 (13%)

Query: 1   MLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFV 60
           M+L   G  + VS+++ P+LH ++T    I +L  P + + ++ VPNA+    +  K  V
Sbjct: 61  MVLWTTGAQI-VSESEAPQLHGMITRLCAIADLPKPQVAIVRTQVPNAFATGRNQNKAVV 119

Query: 61  VVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPG----IGGMIAQ 116
            V T L++ L+  EL+AVLAHEL H+K      LT A+ L+  A+ I       G M   
Sbjct: 120 AVTTGLMDKLSPAELEAVLAHELSHVKNRDMAVLTIASFLSSVAFYIVRYSLYFGNMGGG 179

Query: 117 SLEEQ---LFRWL-----------------RAAELTCDRAALLVSQDPKVVISVLMKLAG 156
             +E    +  WL                 R  E + DR A +++  P  + S LMK++G
Sbjct: 180 RRKEGGGIMLVWLVSIVVWIVSFLLIRALSRYREFSADRGAAVITGQPANLASALMKISG 239

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|Q8TP15|HTPX2_METAC Protease HtpX homolog 2 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=htpX2 PE=3 SV=1 Back     alignment and function description
>sp|Q2RKK7|HTPX_MOOTA Protease HtpX homolog OS=Moorella thermoacetica (strain ATCC 39073) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|Q3SW84|HTPX_NITWN Protease HtpX homolog OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|B5YKM8|HTPX_THEYD Protease HtpX homolog OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|Q8THH5|HTPX1_METAC Protease HtpX homolog 1 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=htpX1 PE=3 SV=1 Back     alignment and function description
>sp|A1AZW2|HTPX_PARDP Protease HtpX homolog OS=Paracoccus denitrificans (strain Pd 1222) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|A0QRJ0|HTPX_MYCS2 Protease HtpX homolog OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|B3QED3|HTPX_RHOPT Protease HtpX homolog OS=Rhodopseudomonas palustris (strain TIE-1) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|Q8U1S0|HTPX_PYRFU Protease HtpX homolog OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=htpX PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
255536903 338 metalloendopeptidase, putative [Ricinus 0.995 0.689 0.905 1e-120
225451439 363 PREDICTED: uncharacterized protein LOC10 0.991 0.639 0.896 1e-119
449455858334 PREDICTED: protease HtpX homolog 1-like 0.995 0.697 0.854 1e-116
224060249 347 predicted protein [Populus trichocarpa] 0.982 0.662 0.886 1e-115
356558714329 PREDICTED: uncharacterized protein LOC10 0.982 0.699 0.860 1e-115
297814950 344 peptidase M48 family protein [Arabidopsi 0.991 0.674 0.862 1e-114
18405231 344 Peptidase family M48 family protein [Ara 0.991 0.674 0.857 1e-113
21553677 344 unknown [Arabidopsis thaliana] 0.991 0.674 0.853 1e-113
357134404325 PREDICTED: uncharacterized protein LOC10 0.961 0.692 0.853 1e-111
326517040334 predicted protein [Hordeum vulgare subsp 0.965 0.676 0.841 1e-110
>gi|255536903|ref|XP_002509518.1| metalloendopeptidase, putative [Ricinus communis] gi|223549417|gb|EEF50905.1| metalloendopeptidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/233 (90%), Positives = 222/233 (95%)

Query: 1   MLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFV 60
           MLLENIGTSVLVSKNQL ELHQLMTEAA ILNLEAPDLYVRQSPVPNAYTLAISGKKPFV
Sbjct: 105 MLLENIGTSVLVSKNQLSELHQLMTEAAAILNLEAPDLYVRQSPVPNAYTLAISGKKPFV 164

Query: 61  VVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEE 120
           VVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYT+PG+G +IAQ+LEE
Sbjct: 165 VVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTVPGLGRLIAQTLEE 224

Query: 121 QLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKA 180
           QLFRWLRAAELTCDRAALLV+QDPKVVISVLMKLAGG PS+ADQLNVDAFLEQARSYDKA
Sbjct: 225 QLFRWLRAAELTCDRAALLVAQDPKVVISVLMKLAGGSPSIADQLNVDAFLEQARSYDKA 284

Query: 181 SSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHT 233
           SSSP+GWYIRNAQTRQLSHPL VLRAREID WSRSQ+Y +LL+RA +MN V  
Sbjct: 285 SSSPIGWYIRNAQTRQLSHPLPVLRAREIDEWSRSQEYRTLLQRATQMNVVQN 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225451439|ref|XP_002273907.1| PREDICTED: uncharacterized protein LOC100263426 [Vitis vinifera] gi|296082349|emb|CBI21354.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455858|ref|XP_004145667.1| PREDICTED: protease HtpX homolog 1-like [Cucumis sativus] gi|449521182|ref|XP_004167609.1| PREDICTED: protease HtpX homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224060249|ref|XP_002300105.1| predicted protein [Populus trichocarpa] gi|222847363|gb|EEE84910.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356558714|ref|XP_003547648.1| PREDICTED: uncharacterized protein LOC100776801 [Glycine max] Back     alignment and taxonomy information
>gi|297814950|ref|XP_002875358.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] gi|297321196|gb|EFH51617.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18405231|ref|NP_566808.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|30688648|ref|NP_850640.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|9279635|dbj|BAB01093.1| unnamed protein product [Arabidopsis thaliana] gi|15010606|gb|AAK73962.1| AT3g27110/MOJ10_21 [Arabidopsis thaliana] gi|27363402|gb|AAO11620.1| At3g27110/MOJ10_21 [Arabidopsis thaliana] gi|222423154|dbj|BAH19556.1| AT3G27110 [Arabidopsis thaliana] gi|332643747|gb|AEE77268.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|332643748|gb|AEE77269.1| Peptidase family M48 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21553677|gb|AAM62770.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357134404|ref|XP_003568807.1| PREDICTED: uncharacterized protein LOC100839697 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|326517040|dbj|BAJ96512.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
TAIR|locus:2092010344 AT3G27110 [Arabidopsis thalian 0.987 0.671 0.861 1.4e-103
UNIPROTKB|O53978348 Rv1977 "Uncharacterized protei 0.905 0.609 0.345 6.2e-30
UNIPROTKB|Q887E6 400 PSPTO_1350 "Uncharacterized pr 0.752 0.44 0.281 4e-08
UNIPROTKB|P65815286 htpX "Protease HtpX homolog" [ 0.320 0.262 0.32 3.7e-07
TIGR_CMR|CHY_0108281 CHY_0108 "peptidase, M48 famil 0.324 0.270 0.342 9.4e-07
TIGR_CMR|GSU_1189316 GSU_1189 "peptidase, M48 famil 0.376 0.278 0.326 7.1e-06
UNIPROTKB|Q8EKI3 447 SO_0110 "Zn-dependent protease 0.649 0.340 0.254 0.00015
TIGR_CMR|SO_0110 447 SO_0110 "conserved hypothetica 0.649 0.340 0.254 0.00015
UNIPROTKB|Q3AAB8312 CHY_2097 "Peptidase, homolog" 0.525 0.394 0.284 0.00088
TIGR_CMR|CHY_2097312 CHY_2097 "peptidase, homolog" 0.525 0.394 0.284 0.00088
TAIR|locus:2092010 AT3G27110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
 Identities = 199/231 (86%), Positives = 215/231 (93%)

Query:     1 MLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFV 60
             MLLENIGTSVLVSKNQL +LH L+ EAAEILN+EAPDLYVRQSPVPNAYTLAISGKKPF+
Sbjct:   111 MLLENIGTSVLVSKNQLSDLHGLLVEAAEILNIEAPDLYVRQSPVPNAYTLAISGKKPFI 170

Query:    61 VVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEE 120
             VVHTSL+ELLT  ELQAVLAHELGHLKCDHGVWLTFANILTLGAYT+P  G MIA++LEE
Sbjct:   171 VVHTSLIELLTSAELQAVLAHELGHLKCDHGVWLTFANILTLGAYTVPAFGQMIARTLEE 230

Query:   121 QLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKA 180
             QL RWLR+AELTCDRAALLV+QDPKVV+SVLMKLAGGCPS+ADQLNVDAFLEQARSYDKA
Sbjct:   231 QLLRWLRSAELTCDRAALLVAQDPKVVVSVLMKLAGGCPSIADQLNVDAFLEQARSYDKA 290

Query:   181 SSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTV 231
             SSSP+GWYIRNAQT QLSHPL VLRAREID WSRS +Y SLLKRA + +TV
Sbjct:   291 SSSPLGWYIRNAQTSQLSHPLPVLRAREIDEWSRSLEYKSLLKRANRKSTV 341
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
UNIPROTKB|O53978 Rv1977 "Uncharacterized protein" [Mycobacterium tuberculosis H37Rv (taxid:83332)] Back     alignment and assigned GO terms
UNIPROTKB|Q887E6 PSPTO_1350 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
UNIPROTKB|P65815 htpX "Protease HtpX homolog" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0108 CHY_0108 "peptidase, M48 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1189 GSU_1189 "peptidase, M48 family" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EKI3 SO_0110 "Zn-dependent protease with chaperone function" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0110 SO_0110 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AAB8 CHY_2097 "Peptidase, homolog" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2097 CHY_2097 "peptidase, homolog" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.84LOW CONFIDENCE prediction!
3rd Layer3.4.240.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037849001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (433 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
COG0501302 COG0501, HtpX, Zn-dependent protease with chaperon 3e-23
PRK02391296 PRK02391, PRK02391, heat shock protein HtpX; Provi 5e-17
pfam01435223 pfam01435, Peptidase_M48, Peptidase family M48 2e-16
PRK03982288 PRK03982, PRK03982, heat shock protein HtpX; Provi 2e-12
PRK01265324 PRK01265, PRK01265, heat shock protein HtpX; Provi 7e-10
PRK04897298 PRK04897, PRK04897, heat shock protein HtpX; Provi 1e-09
PRK01345317 PRK01345, PRK01345, heat shock protein HtpX; Provi 2e-09
PRK02870336 PRK02870, PRK02870, heat shock protein HtpX; Provi 1e-08
PRK03001283 PRK03001, PRK03001, M48 family peptidase; Provisio 2e-08
PRK03072288 PRK03072, PRK03072, heat shock protein HtpX; Provi 1e-05
PRK05457284 PRK05457, PRK05457, heat shock protein HtpX; Provi 7e-05
COG4783 484 COG4783, COG4783, Putative Zn-dependent protease, 0.004
>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score = 95.0 bits (236), Expect = 3e-23
 Identities = 54/234 (23%), Positives = 84/234 (35%), Gaps = 40/234 (17%)

Query: 8   TSVLVSKNQLPELHQLMTEAAEILNLEA----PDLYVRQSPVPNAYTLAISGKKPFVVVH 63
           T              L+ + AE+         P++Y+ ++P PNA+ L    K   VVV 
Sbjct: 86  TLSEPILLAPRLYAVLLLKVAELARQAGIPHMPEVYILETPQPNAFALGGGPKNGRVVVT 145

Query: 64  TSLVELLTRKELQAVLAHELGHLKCDH---------GVWLTFANILTL-----GAYTIPG 109
           T L++LL   EL+AVLAHELGH+K  H          +   F  + TL            
Sbjct: 146 TGLLDLLNDDELEAVLAHELGHIKNRHTLVRLTLRGLLASAFVLLATLALAAGLLGEAAL 205

Query: 110 IGGMIAQSLEEQLF-----RWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQ 164
              ++   L   L       + R  E   DR A  ++  P+ + S L KLA        +
Sbjct: 206 ALLLLLLLLALFLATLLVLAFSRKREYEADRFAAKLTG-PEKLASALQKLARLSGRANSK 264

Query: 165 LNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDY 218
             + +                G+     Q    +HP L  R   +   + +   
Sbjct: 265 AFIAS----------------GFSGGRLQALFSTHPPLAERIAALRQLALTVGI 302

Length = 302
>gnl|CDD|179418 PRK02391, PRK02391, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48 Back     alignment and domain information
>gnl|CDD|235186 PRK03982, PRK03982, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|234931 PRK01265, PRK01265, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235318 PRK04897, PRK04897, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|234944 PRK01345, PRK01345, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235081 PRK02870, PRK02870, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|179524 PRK03001, PRK03001, M48 family peptidase; Provisional Back     alignment and domain information
>gnl|CDD|235102 PRK03072, PRK03072, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235478 PRK05457, PRK05457, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 234
PRK04897298 heat shock protein HtpX; Provisional 100.0
PRK02391296 heat shock protein HtpX; Provisional 100.0
PRK03072288 heat shock protein HtpX; Provisional 100.0
PRK03982288 heat shock protein HtpX; Provisional 100.0
PRK01345317 heat shock protein HtpX; Provisional 100.0
PRK03001283 M48 family peptidase; Provisional 100.0
PRK01265324 heat shock protein HtpX; Provisional 100.0
PRK02870336 heat shock protein HtpX; Provisional 100.0
PRK05457284 heat shock protein HtpX; Provisional 100.0
COG0501302 HtpX Zn-dependent protease with chaperone function 99.96
PF01435226 Peptidase_M48: Peptidase family M48 This is family 99.96
KOG2719428 consensus Metalloprotease [General function predic 99.93
COG4783 484 Putative Zn-dependent protease, contains TPR repea 99.89
KOG2661424 consensus Peptidase family M48 [Posttranslational 99.85
COG4784 479 Putative Zn-dependent protease [General function p 99.83
PF05569299 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0 99.68
COG4219337 MecR1 Antirepressor regulating drug resistance, pr 99.33
PF06114122 DUF955: Domain of unknown function (DUF955); Inter 98.0
PF04228292 Zn_peptidase: Putative neutral zinc metallopeptida 97.89
PF10463206 Peptidase_U49: Peptidase U49; InterPro: IPR019504 97.78
PRK09672305 phage exclusion protein Lit; Provisional 97.49
PF01863205 DUF45: Protein of unknown function DUF45; InterPro 97.3
COG1451223 Predicted metal-dependent hydrolase [General funct 96.92
PRK04351149 hypothetical protein; Provisional 96.74
smart00731146 SprT SprT homologues. Predicted to have roles in t 96.44
PF13203292 DUF2201_N: Putative metallopeptidase domain 96.17
PF10263157 SprT-like: SprT-like family; InterPro: IPR006640 T 95.99
PF1369979 DUF4157: Domain of unknown function (DUF4157) 95.77
PF10026195 DUF2268: Predicted Zn-dependent protease (DUF2268) 95.68
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 95.19
COG2321295 Predicted metalloprotease [General function predic 94.92
PRK04860160 hypothetical protein; Provisional 94.85
PF14247220 DUF4344: Domain of unknown function (DUF4344) 94.75
COG2856213 Predicted Zn peptidase [Amino acid transport and m 93.55
COG3091156 SprT Zn-dependent metalloprotease, SprT family [Ge 93.09
COG3590654 PepO Predicted metalloendopeptidase [Posttranslati 90.99
PF02031132 Peptidase_M7: Streptomyces extracellular neutral p 90.76
COG4900133 Predicted metallopeptidase [General function predi 90.67
PF12388211 Peptidase_M57: Dual-action HEIGH metallo-peptidase 90.44
COG1164598 Oligoendopeptidase F [Amino acid transport and met 90.4
PF04298222 Zn_peptidase_2: Putative neutral zinc metallopepti 88.93
TIGR00181591 pepF oligoendopeptidase F. This family represents 88.16
PF13485128 Peptidase_MA_2: Peptidase MA superfamily 84.81
PF08325186 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1 84.06
PF14891174 Peptidase_M91: Effector protein 83.99
PF00413154 Peptidase_M10: Matrixin This Prosite motif covers 82.72
COG4324376 Predicted aminopeptidase [General function predict 82.55
cd04279156 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM 82.26
cd04270244 ZnMc_TACE_like Zinc-dependent metalloprotease; TAC 81.92
cd04277186 ZnMc_serralysin_like Zinc-dependent metalloproteas 81.1
PF09768173 Peptidase_M76: Peptidase M76 family; InterPro: IPR 81.1
TIGR02289549 M3_not_pepF oligoendopeptidase, M3 family. This fa 80.54
cd04268165 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_ 80.03
>PRK04897 heat shock protein HtpX; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.9e-36  Score=259.46  Aligned_cols=196  Identities=22%  Similarity=0.337  Sum_probs=143.7

Q ss_pred             cCCceecCCCCchHHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhh
Q 026723            6 IGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGH   85 (234)
Q Consensus         6 ~~~~~~v~~~~~p~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgH   85 (234)
                      ..++++++|++.|+|++.++++|++.|++.|++|+++++.+|||++|.++.++.|+++++|++.++++|+++|||||+||
T Consensus        68 ~~~a~~v~~~~~p~L~~~v~~la~~~gip~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgH  147 (298)
T PRK04897         68 MNHAREVTEEEAPELWHIVEDMAMVAQIPMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIMNREELEGVIGHEISH  147 (298)
T ss_pred             hCCCEECChhhhHHHHHHHHHHHHHcCCCCCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhCCHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999877778999999999999999999999999999


Q ss_pred             hhcCcHHHHHHHHHHHHHhhh----------hh------------h-HH---HH---HH---HHHH--HHHHHHHHHHHH
Q 026723           86 LKCDHGVWLTFANILTLGAYT----------IP------------G-IG---GM---IA---QSLE--EQLFRWLRAAEL  131 (234)
Q Consensus        86 i~~~h~~~~~~~~~l~~~~~~----------~~------------~-~~---~~---~~---~~~~--~~~~~~sR~~E~  131 (234)
                      ++++|..+.++...+.....+          ..            + ..   .+   +.   ..+.  ...+.+||.+||
T Consensus       148 i~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~  227 (298)
T PRK04897        148 IRNYDIRLSTIAVALASAITLLSDIAGRMMWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREY  227 (298)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            999999887755432211100          00            0 00   00   00   1111  122478999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhCCCCCcccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHh
Q 026723          132 TCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDA  211 (234)
Q Consensus       132 ~AD~~a~~~~~~~~~~~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~  211 (234)
                      +||++|+++++||+++++||.|+...+.... +.+..    -+..+-   .++  ++......|++|||++.+||++|++
T Consensus       228 ~AD~~A~~lt~~p~~La~AL~KL~~~~~~~~-~~~~~----~~~~~i---~~p--~~~~~~~~lfsTHP~~~eRI~~L~~  297 (298)
T PRK04897        228 LADASSVELTRNPQGLISALEKISNSQPMKH-PVDDA----SAALYI---SDP--LKKKGLSKLFDTHPPIEERIERLKN  297 (298)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcccccc-ccChH----HHHhcc---CCC--cccchHHHHHcCCcCHHHHHHHHHc
Confidence            9999999999999999999999988754211 01100    000000   011  1100124679999999999999975

>PRK02391 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03072 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03982 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01345 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03001 M48 family peptidase; Provisional Back     alignment and domain information
>PRK01265 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK02870 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK05457 heat shock protein HtpX; Provisional Back     alignment and domain information
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification Back     alignment and domain information
>KOG2719 consensus Metalloprotease [General function prediction only] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4784 Putative Zn-dependent protease [General function prediction only] Back     alignment and domain information
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function Back     alignment and domain information
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases Back     alignment and domain information
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK09672 phage exclusion protein Lit; Provisional Back     alignment and domain information
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori Back     alignment and domain information
>COG1451 Predicted metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>PRK04351 hypothetical protein; Provisional Back     alignment and domain information
>smart00731 SprT SprT homologues Back     alignment and domain information
>PF13203 DUF2201_N: Putative metallopeptidase domain Back     alignment and domain information
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT) Back     alignment and domain information
>PF13699 DUF4157: Domain of unknown function (DUF4157) Back     alignment and domain information
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>COG2321 Predicted metalloprotease [General function prediction only] Back     alignment and domain information
>PRK04860 hypothetical protein; Provisional Back     alignment and domain information
>PF14247 DUF4344: Domain of unknown function (DUF4344) Back     alignment and domain information
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only] Back     alignment and domain information
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG4900 Predicted metallopeptidase [General function prediction only] Back     alignment and domain information
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57 Back     alignment and domain information
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism] Back     alignment and domain information
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases Back     alignment and domain information
>TIGR00181 pepF oligoendopeptidase F Back     alignment and domain information
>PF13485 Peptidase_MA_2: Peptidase MA superfamily Back     alignment and domain information
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase Back     alignment and domain information
>PF14891 Peptidase_M91: Effector protein Back     alignment and domain information
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site Back     alignment and domain information
>COG4324 Predicted aminopeptidase [General function prediction only] Back     alignment and domain information
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1 Back     alignment and domain information
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily Back     alignment and domain information
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily Back     alignment and domain information
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family Back     alignment and domain information
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
3cqb_A107 Probable protease HTPX homolog; heat shock protein 3e-12
3c37_A253 Peptidase, M48 family; Q74D82, GSR143A, structural 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
4aw6_A482 CAAX prenyl protease 1 homolog; hydrolase, M48 pep 4e-04
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Length = 107 Back     alignment and structure
 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 12 VSKNQLPELHQLMT---EAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 68
          +   +    H L+      A+   +  P + +  S   NA+          V V T L+ 
Sbjct: 17 IESPRNETEHWLLETVGRQAQQAGIGMPTVAIYDSADINAFATGAKRDDSLVAVSTGLLH 76

Query: 69 LLTRKELQAVLAHELGHLK 87
           +TR E +AVLAHE+ H+ 
Sbjct: 77 NMTRDEAEAVLAHEVSHIA 95
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} Length = 482 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
4aw6_A482 CAAX prenyl protease 1 homolog; hydrolase, M48 pep 99.97
3c37_A253 Peptidase, M48 family; Q74D82, GSR143A, structural 99.96
3cqb_A107 Probable protease HTPX homolog; heat shock protein 99.83
3dte_A301 IRRE protein; radiotolerance, gene regulation, met 97.48
3dwb_A670 ECE-1, endothelin-converting enzyme 1; protein, di 82.68
3zuk_A699 Endopeptidase, peptidase family M13; hydrolase-inh 82.3
3ahn_A564 Oligopeptidase, PZ peptidase A; hydrolase, hydrola 81.88
2ddf_A257 ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapi 81.25
1uze_A589 Angiotensin converting enzyme; metalloprotease, in 80.86
3sks_A567 Putative oligoendopeptidase F; structural genomics 80.31
1atl_A202 Atrolysin C; metalloendopeptidase, hydrolase-hydro 80.1
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A Back     alignment and structure
Probab=99.97  E-value=6.9e-30  Score=231.75  Aligned_cols=180  Identities=24%  Similarity=0.255  Sum_probs=135.0

Q ss_pred             ecCCCCchHHHHHHHHHHHHcCCCCCcEEEec----CCCCcEEEecccCCCCEEEEcHHHHhh-----------------
Q 026723           11 LVSKNQLPELHQLMTEAAEILNLEAPDLYVRQ----SPVPNAYTLAISGKKPFVVVHTSLVEL-----------------   69 (234)
Q Consensus        11 ~v~~~~~p~l~~~v~~l~~~~~~~~p~v~v~~----~~~~nA~~~g~~g~~~~I~i~~~ll~~-----------------   69 (234)
                      +.+|.++++|++.++++|++.|++.|++||++    ++.+|||++|+++ .++||+.+.+++.                 
T Consensus       225 k~~Pl~dg~L~~~Ie~la~~~~fp~~~v~vv~gSkRs~~~NAy~~G~~~-~krIVl~dtLl~~~~~~~~~~~~~~~~~~~  303 (482)
T 4aw6_A          225 KFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFK-NKRIVLFDTLLEEYSVLNKDIQEDSGMEPR  303 (482)
T ss_dssp             CEEECCSSHHHHHHHHHHHHTTCCEEEEEEECGGGTBSCCCEEEEESSS-CEEEEEEHHHHC------------------
T ss_pred             CCccCCcHHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCceEEEcCCC-CcEEEEEchHHHhccccccccccccccccc
Confidence            56777888999999999999999999999998    7889999999854 5689999999987                 


Q ss_pred             --------------------cCHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh------hhh---------------h
Q 026723           70 --------------------LTRKELQAVLAHELGHLKCDHGVWLTFANILTLGA------YTI---------------P  108 (234)
Q Consensus        70 --------------------l~~~El~aVlaHElgHi~~~h~~~~~~~~~l~~~~------~~~---------------~  108 (234)
                                          |+++|+++|+|||+||++++|..+.++...+..+.      .+.               |
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~l~~~El~aVlaHElgH~~~~~~~~~~~~~~i~~~~~~~l~~~l~~~~~l~~~~G~~~~~p  383 (482)
T 4aw6_A          304 NEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYDSQP  383 (482)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHTTCCSCCC
T ss_pred             ccccccchhhcccchhhccCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcchhhHhhcCCCCccc
Confidence                                89999999999999999999999887654332111      000               1


Q ss_pred             h-HHHHH-H----HH----HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCCcccccCHHHHHHHHHHhh
Q 026723          109 G-IGGMI-A----QS----LEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYD  178 (234)
Q Consensus       109 ~-~~~~~-~----~~----~~~~~~~~sR~~E~~AD~~a~~~~~~~~~~~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~  178 (234)
                      . ++.++ .    .+    .....+.+||.+|++||++|+++ ++|++++++|.|+...+...                 
T Consensus       384 ~~~~~llv~~~i~~P~~~l~~~i~~~~SR~~E~eAD~~a~~l-g~p~~L~~AL~KL~~~n~s~-----------------  445 (482)
T 4aw6_A          384 TLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKL-GKAKDLYSALIKLNKDNLGF-----------------  445 (482)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHTTCC-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccC-----------------
Confidence            1 11111 1    11    11234689999999999999998 67999999999998654321                 


Q ss_pred             hcCCCchhHHHHhhhhccCCCCchHHHHHHHHhhhhhh
Q 026723          179 KASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQ  216 (234)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~~  216 (234)
                         ..+.++|    ..+++|||++.+||++|++..++.
T Consensus       446 ---~~~~~~~----~~~~sTHP~~~eRI~~L~~~~~~~  476 (482)
T 4aw6_A          446 ---PVSDWLF----SMWHYSHPPLLERLQALKTMKQHA  476 (482)
T ss_dssp             ---SCCCHHH----HHHSCSSCCHHHHHHHHHHC----
T ss_pred             ---CCCChHH----HHHhcCCcCHHHHHHHHHHhhHhh
Confidence               1223333    357999999999999999876653
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Back     alignment and structure
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A Back     alignment and structure
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0 Back     alignment and structure
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex, pathogenicity, phagosome matura; HET: RDF 211 PGE PG4; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A Back     alignment and structure
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ... Back     alignment and structure
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor, enalaprilat, zinc dependant peptidase, anti-hypertensive drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB: 1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A* 2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A* Back     alignment and structure
>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis} Back     alignment and structure
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
d1rm8a_169 Matrix metalloproteinase-16 (MMP-16) {Human (Homo 84.15
d1r55a_203 ADAM33 {Human (Homo sapiens) [TaxId: 9606]} 83.02
d1bswa_197 Snake venom metalloprotease {Five-pace snake (Agki 81.7
d2i47a1254 TNF-alpha converting enzyme, TACE, catalytic domai 81.01
d2ovxa1159 Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 80.25
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.15  E-value=0.2  Score=35.85  Aligned_cols=18  Identities=44%  Similarity=0.669  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHhhhh-cCc
Q 026723           73 KELQAVLAHELGHLK-CDH   90 (234)
Q Consensus        73 ~El~aVlaHElgHi~-~~h   90 (234)
                      ..+..|+.|||||.. .+|
T Consensus       115 ~~~~~v~~HEiGHaLGL~H  133 (169)
T d1rm8a_         115 NDLFLVAVHELGHALGLEH  133 (169)
T ss_dssp             EEHHHHHHHHHHHHHTCCC
T ss_pred             chhhhhhhhhhhhhhcCCC
Confidence            358899999999987 344
>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]} Back     information, alignment and structure
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure