Citrus Sinensis ID: 026726

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS
Secondary Structure (PSIPRED)
cccccccccccHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHccccccccccEEEcccccccccccccEEEccccccHHHcccEccHHHHHHHHccccccccccccHHHccccHHHHHHccccHHHHHHHHHHHHcccHHHHHcccHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgssngggdEELKRMAELSKTLKEGerilaptrrpdgtlrkpiriragyvpqdevAIYQSKGALLRKELTAlqeappgydpeldakpktksvkRNERKKEKRQQAALEKGKIVEKLVDGEIKTEEVVSaenlshgsastdSLTSQMNELsvsanpvvenplsdakdpgdagapgqdIDKRIRAIKKKIRLSEAQQQKAGqqelkpeqLEKLSKLEGWRNELKLLEEKKADLEAS
Flexible Loop (DISEMBL)
mgssngggdeeLKRMAELSKTlkegerilaptrrpdgtlrkpiriragyvpqdevAIYQSKGALLRKELTAlqeappgydpeldakpktksvkrnerkkekrqqaalekgkiveklvdgeIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVEnplsdakdpgdagapgqdiDKRIRAIKKKIRLSEAqqqkagqqelkpeqleklsklegwrNELKlleekkadleas
Low Complexity Region (SEG)
MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAKPKTKSVkrnerkkekrQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQdidkriraikkkirLSEAQQQKAGQQELKPEQLEKLSKLEGWRNelklleekkADLEAS
Disordered region (IsUnstruct)
*****************************************PIRIRAGYVPQDEVAIYQSKGALLR************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
******************************************************************************************************************************************************************************************************************LSKLEGWRNELKL***********
Disordered Region (DISEMBL)
***********LKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAKPK******************LEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSD**********GQDIDKRIRAIKKKIR***************PEQLEKLSKLEGWRNELKLLEEKKADLEAS
Disordered Region (DISPRO)
****************ELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELD*****************************************************************************************GQDIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKAD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
Q6PH11	194	Partner of Y14 and mago O	yes	no	0.735	0.886	0.333	6e-16
Q8CHP5	203	Partner of Y14 and mago O	yes	no	0.688	0.793	0.318	2e-10
A6QPH1	203	Partner of Y14 and mago O	yes	no	0.517	0.596	0.375	2e-10
B0WII7	238	Partner of Y14 and mago O	N/A	no	0.299	0.294	0.45	6e-10
Q7Q6B5	233	Partner of Y14 and mago O	yes	no	0.367	0.369	0.394	1e-09
Q16LW2	253	Partner of Y14 and mago O	N/A	no	0.316	0.292	0.456	2e-09
Q9BRP8	204	Partner of Y14 and mago O	yes	no	0.320	0.367	0.415	9e-09
Q2F5J3	193	Partner of Y14 and mago O	N/A	no	0.735	0.891	0.325	1e-08
B5XDD3	202	Partner of Y14 and mago A	N/A	no	0.726	0.841	0.324	2e-08
P82804	207	Partner of Y14 and mago O	yes	no	0.320	0.362	0.469	4e-08

>sp|Q6PH11|WIBG_DANRE Partner of Y14 and mago OS=Danio rerio GN=wibg PE=2 SV=1

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 41/213 (19%)

Query: 24  EGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGY---- 79
           E  + +A T+RPDG+ RKP R+R GYVPQ+EV +Y++K     K   +  E PPG     
Sbjct: 9   ESGKYIAATQRPDGSWRKPRRVRDGYVPQEEVPVYENK---FVKFFKSKPELPPGVCVET 65

Query: 80  DPELDAKPK-----TKSVKRNERKKEKRQQAALEKGKIVEKLVDGEIKTEEVVSAENLSH 134
            P+   +P      +++ KRN ++KEKR+Q               E K+E  +  E    
Sbjct: 66  PPQTQTQPSDAAGLSRTAKRNMKRKEKRRQQG------------QETKSEPELQPEPELQ 113

Query: 135 GSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEAQ 194
                  L+ QM +L +SA          ++ PG A     D  +R++ ++KK+R  E  
Sbjct: 114 PEPEPQGLSQQMQQLELSA----------SQGPGAA-----DSARRLKNLRKKLRQVEEL 158

Query: 195 QQKAGQQELKP--EQLEKLSKLEGWRNELKLLE 225
           QQ+    ELKP  EQL+KL + +  R EL+ LE
Sbjct: 159 QQRVLSGELKPSQEQLDKLGRAQALREELQQLE 191

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.
Danio rerio (taxid: 7955)

>sp|Q8CHP5|WIBG_MOUSE Partner of Y14 and mago OS=Mus musculus GN=Wibg PE=1 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 40/201 (19%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELD-- 84
           + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E PPG  PE    
Sbjct: 14  KYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPELPPGLSPEATTP 70

Query: 85  ---AKPK------TKSVKRNERKKEKRQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHG 135
              ++P+      +K+ KRN ++KEKR+Q   ++ + + + +D             +S G
Sbjct: 71  VTPSRPEGGETGLSKTAKRNLKRKEKRRQQQEKEAEALSRTLD------------KVSLG 118

Query: 136 SASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEAQQ 195
              T  + S +      A P+       A DP D+ A  +   K+I+ ++KK+R  E  Q
Sbjct: 119 --DTAQIPSALQ--GPQATPLA------ASDPSDSAATTEKA-KKIKNLRKKLRQVEELQ 167

Query: 196 QKAGQQEL-KP--EQLEKLSK 213
           Q+    E+ +P  EQLEKL++
Sbjct: 168 QRIQAGEVSQPSREQLEKLAR 188

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.

Mus musculus (taxid: 10090)

>sp|A6QPH1|WIBG_BOVIN Partner of Y14 and mago OS=Bos taurus GN=WIBG PE=2 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 23/144 (15%)

Query: 15  MAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQE 74
           MA    T + G + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E
Sbjct: 1   MATPYVTDETGGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPE 57

Query: 75  APPGYDPELDA-----KPK------TKSVKRNERKKEKRQQAALEKG------KIVEKLV 117
            PPG  PE  A     +P+      +K+ KRN ++KEKR+Q   EKG      + +EK+ 
Sbjct: 58  LPPGLSPEATAPITASRPEGGEPALSKTAKRNLKRKEKRRQQQ-EKGEAEALSRTLEKVS 116

Query: 118 DGEIKTEEVVSAENLSHGSASTDS 141
            GE  T +V SA   S  + +  S
Sbjct: 117 LGE--TAQVPSAPQASRAAPTAAS 138

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.

Bos taurus (taxid: 9913)

>sp|B0WII7|WIBG_CULQU Partner of Y14 and mago OS=Culex quinquefasciatus GN=wibg PE=3 SV=1

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 10/80 (12%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK 86
           + +  T+RPDGT RKP R+R GYVPQ+EV +Y+SKG L  ++ +     PPG  PE+  K
Sbjct: 11  KFIPATQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQKPS----LPPGLPPEMAQK 66

Query: 87  PKTKSVKRNERKKEKRQQAA 106
                  R +R+KE+R+ AA
Sbjct: 67  ------AREKREKEQRKAAA 80

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Culex quinquefasciatus (taxid: 7176)

>sp|Q7Q6B5|WIBG_ANOGA Partner of Y14 and mago OS=Anopheles gambiae GN=wibg PE=3 SV=4

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 18/104 (17%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK 86
           + +  T+RPDGT RKP R+R GYVPQ+EV +Y+SKG    K+       PPG  PE+  K
Sbjct: 11  KFIPATQRPDGTWRKPRRVRDGYVPQEEVPLYESKG----KQFAQKPALPPGLSPEVVQK 66

Query: 87  PKTK-----------SVKRNERKKEKRQQAALEKGKIVEKLVDG 119
            K K             +R E++ +K+Q  AL  G +    VDG
Sbjct: 67  AKEKRERERLRQAREEQQRKEQQNKKQQAGALPPGVLA---VDG 107

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Anopheles gambiae (taxid: 7165)

>sp|Q16LW2|WIBG_AEDAE Partner of Y14 and mago OS=Aedes aegypti GN=wibg PE=3 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 7/81 (8%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALL-RKELTALQEAPPGYDPELDA 85
           + +  T+RPDGT RKP R+R GYVPQ+EV +Y+SKG L  +K L      PPG  PE+  
Sbjct: 11  KFIPSTQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQKPLL-----PPGMSPEMAQ 65

Query: 86  KPKTKSVKRNERKKEKRQQAA 106
           K + K  +R +R K++R+  A
Sbjct: 66  KSREKR-EREQRIKQQREADA 85

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Aedes aegypti (taxid: 7159)

>sp|Q9BRP8|WIBG_HUMAN Partner of Y14 and mago OS=Homo sapiens GN=WIBG PE=1 SV=1

 Score = 60.5 bits (145), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 14/89 (15%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDA- 85
           + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E PPG  PE  A 
Sbjct: 14  KYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENK---YVKFFKSKPELPPGLSPEATAP 70

Query: 86  ----KPK------TKSVKRNERKKEKRQQ 104
               +P+      +K+ KRN ++KEKR+Q
Sbjct: 71  VTPSRPEGGEPGLSKTAKRNLKRKEKRRQ 99

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions. May bind RNA; the relevance of RNA-binding remains unclear in vivo, RNA-binding was detected by PubMed:14968132, while PubMed:19410547 did not detect RNA-binding activity independently of the EJC.

Homo sapiens (taxid: 9606)

>sp|Q2F5J3|WIBG_BOMMO Partner of Y14 and mago OS=Bombyx mori GN=wibg PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 34/206 (16%)

Query: 24  EGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQE--APPGYDP 81
           +G + +  T+RPDGT RKP RI+ GYVPQ+EV +Y+SKG    K+  A Q    P G  P
Sbjct: 12  DGSKFIPATQRPDGTWRKPRRIKEGYVPQEEVPLYESKG----KQFRARQNDGLPVGLTP 67

Query: 82  ELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDS 141
           E+ A+ + K  +R+  +        +EK K  +K V G    EE  +AE L+       +
Sbjct: 68  EIVAQAQKKKGQRSTIQPIPGMIITVEKKKKKKKTVTG---VEE--AAEKLAKCEIQEPT 122

Query: 142 LTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEAQQQKAGQQ 201
           L SQ    SV    + ++                D  KR++ ++KK+R  E  ++K    
Sbjct: 123 LPSQ----SVPTESISQS----------------DPTKRLKNLRKKLREIEFLEEKIKAG 162

Query: 202 ELKP---EQLEKLSKLEGWRNELKLL 224
            LK    +Q EK+SK     NE+ +L
Sbjct: 163 LLKSPDKDQKEKMSKKNEILNEIDIL 188

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Bombyx mori (taxid: 7091)

>sp|B5XDD3|WIBGA_SALSA Partner of Y14 and mago A OS=Salmo salar GN=wibga PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 102/219 (46%), Gaps = 49/219 (22%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK 86
           + +A T+RPDGT RKP R++ GY PQ+EV +Y++K     K      + PPG  P   A+
Sbjct: 12  KYIAATQRPDGTWRKPRRVKDGYTPQEEVPVYENK---FVKFFKGKPDLPPGMSPGNAAQ 68

Query: 87  PK----------------TKSVKRNERKKEKRQQAALEKGKIVEKLVDGEIKTEEVVSAE 130
            +                +K+ KRN ++KEKR+Q   +    VE L +     E +  AE
Sbjct: 69  ARQQQGIPGIAENEIAGLSKTAKRNMKRKEKRKQQGPDSN--VELLTNA---VETMTFAE 123

Query: 131 NLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRL 190
           +        D++T               NP     DP  A A   +  K+I+ IKKK+R 
Sbjct: 124 D-------GDNVTP------------ASNPAGATYDPSSAIA---EKAKKIKNIKKKLRQ 161

Query: 191 SEAQQQKAGQQELK---PEQLEKLSKLEGWRNELKLLEE 226
            E  QQK    E+K    EQ EKL + +  + EL  LEE
Sbjct: 162 VEELQQKLDSGEIKQATKEQQEKLGRAKALQGELLQLEE 200

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.

Salmo salar (taxid: 8030)

>sp|P82804|WIBG_DROME Partner of Y14 and mago OS=Drosophila melanogaster GN=wibg PE=1 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 8/83 (9%)

Query: 24  EGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEA--PPGYDP 81
           EG+ I A T+RPDGT RK  R++ GYVPQ+EV +Y+SKG    K+  A ++A  PPG  P
Sbjct: 9   EGKFIPA-TKRPDGTWRKARRVKDGYVPQEEVPLYESKG----KQFVAQRQAGVPPGMCP 63

Query: 82  ELDAKPKTKSVKRNERKKEKRQQ 104
            L A+ K K  ++ ER + K+Q+
Sbjct: 64  LLAAESK-KEREKQERTRAKKQE 85

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
147782757	234	hypothetical protein VITISV_043015 [Viti	0.991	0.991	0.703	1e-84
225448093	236	PREDICTED: partner of Y14 and mago-like	0.991	0.983	0.703	1e-84
118487739	240	unknown [Populus trichocarpa]	0.965	0.941	0.711	6e-81
255575432	252	protein with unknown function [Ricinus c	0.957	0.888	0.686	1e-79
224058992	204	predicted protein [Populus trichocarpa]	0.871	1.0	0.674	4e-72
449438240	230	PREDICTED: partner of Y14 and mago-like	0.974	0.991	0.625	5e-67
449523984	234	PREDICTED: partner of Y14 and mago-like	0.918	0.918	0.638	8e-64
449452002	216	PREDICTED: partner of Y14 and mago-like	0.910	0.986	0.639	2e-63
297843968	206	partner of Y14-mago [Arabidopsis lyrata	0.880	1.0	0.589	4e-59
356525387	196	PREDICTED: partner of Y14 and mago-like	0.824	0.984	0.588	7e-59

>gi|147782757|emb|CAN63437.1| hypothetical protein VITISV_043015 [Vitis vinifera] gi|298204603|emb|CBI23878.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 164/233 (70%), Positives = 196/233 (84%), Gaps = 1/233 (0%)

Query: 2   GSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK 61
           GS    G+EELK++AELSK+LKEGER+LAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK
Sbjct: 3   GSDGREGEEELKQLAELSKSLKEGERLLAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK 62

Query: 62  GALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEI 121
           GAL RKE+ A QE PPGYDP  DAKPKTKSVKRNERKKEKR QAAL+KGK +E++VDGE+
Sbjct: 63  GALWRKEM-ASQEGPPGYDPPTDAKPKTKSVKRNERKKEKRLQAALDKGKNLEQMVDGEV 121

Query: 122 KTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRI 181
             + V+SAE+++HGS   +S+ SQMNEL+V+ NP    P S++ +  + G    DIDKRI
Sbjct: 122 NQDGVLSAEDVNHGSEFVESVASQMNELTVTENPTTVTPPSESIECLNPGGAAPDIDKRI 181

Query: 182 RAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 234
           RA+KKKIRL+EAQQQKA QQE+KPEQL+K+ KLEGW+ ELKLLE+KKA+L AS
Sbjct: 182 RALKKKIRLTEAQQQKASQQEMKPEQLDKMMKLEGWQKELKLLEDKKAELAAS 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448093|ref|XP_002276574.1| PREDICTED: partner of Y14 and mago-like [Vitis vinifera]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 164/233 (70%), Positives = 196/233 (84%), Gaps = 1/233 (0%)

Query: 2   GSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK 61
           GS    G+EELK++AELSK+LKEGER+LAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK
Sbjct: 5   GSDGREGEEELKQLAELSKSLKEGERLLAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK 64

Query: 62  GALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEI 121
           GAL RKE+ A QE PPGYDP  DAKPKTKSVKRNERKKEKR QAAL+KGK +E++VDGE+
Sbjct: 65  GALWRKEM-ASQEGPPGYDPPTDAKPKTKSVKRNERKKEKRLQAALDKGKNLEQMVDGEV 123

Query: 122 KTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRI 181
             + V+SAE+++HGS   +S+ SQMNEL+V+ NP    P S++ +  + G    DIDKRI
Sbjct: 124 NQDGVLSAEDVNHGSEFVESVASQMNELTVTENPTTVTPPSESIECLNPGGAAPDIDKRI 183

Query: 182 RAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 234
           RA+KKKIRL+EAQQQKA QQE+KPEQL+K+ KLEGW+ ELKLLE+KKA+L AS
Sbjct: 184 RALKKKIRLTEAQQQKASQQEMKPEQLDKMMKLEGWQKELKLLEDKKAELAAS 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487739|gb|ABK95693.1| unknown [Populus trichocarpa]

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 163/229 (71%), Positives = 184/229 (80%), Gaps = 3/229 (1%)

Query: 6   GGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALL 65
           GGGDEELK M E+SKTLKEGERI+AP+RRPDGTLRKPIRIRAGYVPQDEVAIYQSKGAL 
Sbjct: 14  GGGDEELKEMTEISKTLKEGERIVAPSRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALW 73

Query: 66  RKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEIKTEE 125
           RKE+ + QE PPGYD +   KPKTKSVKRNERKKEKR QAALEKGK  E + DG +  + 
Sbjct: 74  RKEMQS-QEVPPGYDTDPHTKPKTKSVKRNERKKEKRHQAALEKGKNTEAIEDGNM-VKG 131

Query: 126 VVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIK 185
            +  E+L H S S  SLTSQMNEL+VS+NP V  P SD  D  +  +P QDIDKRIRA+K
Sbjct: 132 ALPDEDLGHASDSVKSLTSQMNELAVSSNPAVVGPSSDLADASNMESPVQDIDKRIRALK 191

Query: 186 KKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 234
           KKIRL+EAQQQK   Q++ PEQLEKL+KLEGWR ELKLLE KKA+ EAS
Sbjct: 192 KKIRLAEAQQQKTSSQDMNPEQLEKLAKLEGWRQELKLLEGKKAE-EAS 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575432|ref|XP_002528618.1| protein with unknown function [Ricinus communis] gi|223531963|gb|EEF33776.1| protein with unknown function [Ricinus communis]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 186/230 (80%), Gaps = 6/230 (2%)

Query: 1   MGSSNGGG----DEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVA 56
           M ++N GG    +E++K+MAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVA
Sbjct: 1   MATNNNGGGGREEEQIKKMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVA 60

Query: 57  IYQSKGALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKL 116
           IYQS+GAL +KE+ +L   PPGYDP +DAKPKTKSVKRNERKKEKR QAALEKGK ++  
Sbjct: 61  IYQSRGALWKKEMQSLHVVPPGYDPGMDAKPKTKSVKRNERKKEKRLQAALEKGKNLDAS 120

Query: 117 VDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQD 176
             G++K  EV+  E++ H S S  SLTSQMNEL VSANPV+  P  D+ +  D  A  QD
Sbjct: 121 AAGDMK-REVLPDEDVGHASESVKSLTSQMNELDVSANPVLSIP-GDSTETLDPNASSQD 178

Query: 177 IDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEE 226
           IDKRIRA+KKKIR +EAQQQKA  Q++KPEQLEKL+KLEGW  ELK+LE+
Sbjct: 179 IDKRIRALKKKIRQAEAQQQKATSQDMKPEQLEKLAKLEGWHQELKILED 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058992|ref|XP_002299675.1| predicted protein [Populus trichocarpa] gi|222846933|gb|EEE84480.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 145/215 (67%), Positives = 166/215 (77%), Gaps = 11/215 (5%)

Query: 15  MAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQE 74
           M E+SKTLKEGERI+AP+RRPDGTLRKPIRIRAGYVPQDEVAIYQSKGAL RKE+ + QE
Sbjct: 1   MTEISKTLKEGERIVAPSRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALWRKEMQS-QE 59

Query: 75  APPGYDPELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEIKTEEVVSAENLSH 134
            PPGYD +   KPKTKSVKRNERKKEKR Q ++E G +V+            +  E+L H
Sbjct: 60  VPPGYDTDPHTKPKTKSVKRNERKKEKRHQVSIEDGNMVKG----------ALPDEDLGH 109

Query: 135 GSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEAQ 194
            S S  SLTSQMNEL+VS+NP V  P SD  D  +  +P QDIDKRIRA+KKKIRL+EAQ
Sbjct: 110 ASDSVKSLTSQMNELAVSSNPAVVAPSSDLADASNMESPVQDIDKRIRALKKKIRLAEAQ 169

Query: 195 QQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKA 229
           QQK   Q++ PEQLEKL+KLEGWR ELKLLE KKA
Sbjct: 170 QQKTSSQDMNPEQLEKLAKLEGWRQELKLLEGKKA 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438240|ref|XP_004136897.1| PREDICTED: partner of Y14 and mago-like [Cucumis sativus]

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 147/235 (62%), Positives = 175/235 (74%), Gaps = 7/235 (2%)

Query: 1   MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQS 60
           MGSS+GGG++  K+M ELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQ+EVAIYQS
Sbjct: 1   MGSSDGGGEDLCKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60

Query: 61  KGALLRKELTALQEAPPGYD-PELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDG 119
           KGAL +KE+ A  + PPGY+ P  D K KTKS KRNERKKEKR QAA EK K++E++V  
Sbjct: 61  KGALWKKEM-ASHDGPPGYEPPTTDVKTKTKSAKRNERKKEKRLQAAHEKDKVLEQVVVE 119

Query: 120 EIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDK 179
           EI   +    +N         SL+SQMNEL+VS N  VE+P S+  D  D   P  D+DK
Sbjct: 120 EITEAKEAYVDNRLE---PIQSLSSQMNELAVSTNLKVESPSSEPID--DPQLPSSDLDK 174

Query: 180 RIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 234
           RIRA KKKIR++EAQ QK   Q++KPEQ  KLSKLE WR+EL LLEE++  L +S
Sbjct: 175 RIRATKKKIRMAEAQLQKTPLQDMKPEQANKLSKLETWRSELMLLEEQRLKLNSS 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523984|ref|XP_004169003.1| PREDICTED: partner of Y14 and mago-like [Cucumis sativus]

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 143/224 (63%), Positives = 168/224 (75%), Gaps = 9/224 (4%)

Query: 13  KRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTAL 72
           K+M ELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQ+EVAIYQSKGAL +KE+ + 
Sbjct: 17  KQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEMASH 76

Query: 73  QEAPPGYD-PELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEI-KTEEVVSAE 130
            E PPGYD P  D K KTKS KRNERKKEKR QAA EK K++E++V  EI + +E   A 
Sbjct: 77  DE-PPGYDSPTTDVKTKTKSAKRNERKKEKRLQAAHEKDKVLEQVVVEEITEPKEAYVAN 135

Query: 131 NLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRL 190
            L        SL+SQMNEL+VS N  VE+P S+  D  D   P  D+DKRIRA KKKIR+
Sbjct: 136 RLE----PIQSLSSQMNELAVSTNLKVESPSSEPID--DPQLPSSDLDKRIRATKKKIRM 189

Query: 191 SEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 234
           +EAQ QK   Q++KPEQ  KLSKLE WR+EL LLEE++ +L +S
Sbjct: 190 AEAQLQKTPLQDMKPEQANKLSKLETWRSELMLLEEQRVNLNSS 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452002|ref|XP_004143749.1| PREDICTED: partner of Y14 and mago-like [Cucumis sativus]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/222 (63%), Positives = 166/222 (74%), Gaps = 9/222 (4%)

Query: 15  MAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQE 74
           M ELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQ+EVAIYQSKGAL +KE+ A  +
Sbjct: 1   MTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEM-ASHD 59

Query: 75  APPGYD-PELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEI-KTEEVVSAENL 132
            PPGYD P  D K KTKS KRNERKKEKR QAA EK K++E++V  EI + +E   A  L
Sbjct: 60  EPPGYDPPTTDVKTKTKSAKRNERKKEKRLQAAHEKDKVLEQVVVEEITEPKEAYVANRL 119

Query: 133 SHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSE 192
                   SL+SQMNEL+VS N  VE+P S+  D  D   P  D+DKRIRA KKKIR++E
Sbjct: 120 E----PIQSLSSQMNELAVSTNLKVESPSSEPID--DPQLPSSDLDKRIRATKKKIRMAE 173

Query: 193 AQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 234
           AQ QK   Q++KPEQ  KLSKLE WR+EL LLEE++ +L +S
Sbjct: 174 AQLQKTPLQDMKPEQANKLSKLETWRSELMLLEEQRVNLNSS 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843968|ref|XP_002889865.1| partner of Y14-mago [Arabidopsis lyrata subsp. lyrata] gi|297335707|gb|EFH66124.1| partner of Y14-mago [Arabidopsis lyrata subsp. lyrata]

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 164/229 (71%), Gaps = 23/229 (10%)

Query: 1   MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQS 60
           MGS+N  G E+ K+MA+LSK+LKEGERIL PTRRPDGTLRKPIRIRAGYVPQDEV  YQS
Sbjct: 1   MGSNNKSG-EQGKQMADLSKSLKEGERILEPTRRPDGTLRKPIRIRAGYVPQDEVVKYQS 59

Query: 61  KGALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGE 120
           KG+L++KE+ +  + PPGY+P+   KPKTKS KRNERKKEKR Q+  EKG   E   DG 
Sbjct: 60  KGSLMKKEMAS--QGPPGYEPDPAPKPKTKSAKRNERKKEKRLQSTAEKGNSSE---DG- 113

Query: 121 IKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKR 180
                     + S+GS S + L S+M  L VS+N  V     +A +P      G+D++KR
Sbjct: 114 ----------SASNGSQSVNVLASEMEALDVSSNNDV---CGEAPNPVTT---GEDVEKR 157

Query: 181 IRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKA 229
           IRA+KKKIRL+EAQQQK   Q+L PEQLEK SKLE WR ELK LE+K+A
Sbjct: 158 IRALKKKIRLTEAQQQKTASQDLNPEQLEKFSKLEEWRQELKALEDKEA 206

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525387|ref|XP_003531306.1| PREDICTED: partner of Y14 and mago-like [Glycine max]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 161/226 (71%), Gaps = 33/226 (14%)

Query: 9   DEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKE 68
           DE  K++AELSK+LKEGER++ PTRRPDGTLRKPIRIRAGY PQDEVAIYQ KGALL+KE
Sbjct: 4   DERKKQIAELSKSLKEGERLVGPTRRPDGTLRKPIRIRAGYTPQDEVAIYQPKGALLKKE 63

Query: 69  LTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEIKTEEVVS 128
           + +    PPGY+P+ D+KPKTKSVKRNERKKEKR QAALEK K V ++ D          
Sbjct: 64  MGSA--GPPGYEPDADSKPKTKSVKRNERKKEKRIQAALEKEKNVSEVED---------- 111

Query: 129 AENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKI 188
               S    S ++LTSQ+N L+V  +P                   QDIDKRIRA+KKKI
Sbjct: 112 ----SGKQESLEALTSQVNRLAVQDSP-----------------QAQDIDKRIRALKKKI 150

Query: 189 RLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 234
           RL+EA +QK+ +Q+LKPEQLEKL+KLE WR ELKLLE++K +   S
Sbjct: 151 RLTEALEQKSAEQDLKPEQLEKLAKLEDWRRELKLLEDEKGETTVS 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2200116	204	PYM "partner of Y14-MAGO" [Ara	0.576	0.661	0.525	4.9e-30
UNIPROTKB|Q2F5J3	193	wibg "Partner of Y14 and mago"	0.482	0.585	0.370	8.2e-12
MGI|MGI:1925678	203	Wibg "within bgcn homolog (Dro	0.739	0.852	0.317	1.7e-11
UNIPROTKB|Q7Q6B5	233	wibg "Partner of Y14 and mago"	0.367	0.369	0.417	3.5e-11
FB|FBgn0034918	207	wibg "within bgcn" [Drosophila	0.286	0.323	0.445	5.1e-11
UNIPROTKB|B0WII7	238	wibg "Partner of Y14 and mago"	0.277	0.273	0.485	5.8e-11
UNIPROTKB|A6QPH1	203	WIBG "Partner of Y14 and mago"	0.794	0.916	0.298	9.4e-11
UNIPROTKB|Q16LW2	253	wibg "Partner of Y14 and mago"	0.252	0.233	0.492	1.4e-10
UNIPROTKB|F1SPJ0	204	WIBG "Uncharacterized protein"	0.743	0.852	0.306	1.5e-10
UNIPROTKB|Q9BRP8	204	WIBG "Partner of Y14 and mago"	0.777	0.892	0.304	2e-10

TAIR|locus:2200116 PYM "partner of Y14-MAGO" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 81/154 (52%), Positives = 96/154 (62%)

Query:     1 MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQS 60
             MGS +G   E+ KRMAELSK LKEGERIL PTRRPDGTLRKPIRIR GY P+DEV  YQS
Sbjct:     1 MGSRSG---EQGKRMAELSKNLKEGERILEPTRRPDGTLRKPIRIRPGYTPEDEVVKYQS 57

Query:    61 KGALLRKELTALQEAPPGYDPELDAKPKTKSVXXXXXXXXXXQQAALEKGKIVEKLVDGE 120
             KG+L++KE+ +  + PPGY+P+   KPKTK+            QA  EK    E   DG 
Sbjct:    58 KGSLMKKEMAS--QGPPGYEPDPAPKPKTKAAKRNERKKEKRLQATAEKANSSE---DG- 111

Query:   121 IKTEEVVSAENLSHGSASTDSLTSQMNELSVSAN 154
                    SA N   GS S + L S+M  L VS+N
Sbjct:   112 -------SASN---GSQSVNVLASEMEALDVSSN 135

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

UNIPROTKB|Q2F5J3 wibg "Partner of Y14 and mago" [Bombyx mori (taxid:7091)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 46/124 (37%), Positives = 63/124 (50%)

Query:    24 EGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQE--APPGYDP 81
             +G + +  T+RPDGT RKP RI+ GYVPQ+EV +Y+SKG    K+  A Q    P G  P
Sbjct:    12 DGSKFIPATQRPDGTWRKPRRIKEGYVPQEEVPLYESKG----KQFRARQNDGLPVGLTP 67

Query:    82 ELDAKPKTKSVXXXXXXXXXXQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDS 141
             E+ A+ + K                +EK K  +K V G    EE  +AE L+       +
Sbjct:    68 EIVAQAQKKKGQRSTIQPIPGMIITVEKKKKKKKTVTG---VEE--AAEKLAKCEIQEPT 122

Query:   142 LTSQ 145
             L SQ
Sbjct:   123 LPSQ 126

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

MGI|MGI:1925678 Wibg "within bgcn homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 60/189 (31%), Positives = 85/189 (44%)

Query:    27 RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK 86
             + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E PPG  PE    
Sbjct:    14 KYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPELPPGLSPEATT- 69

Query:    87 PKTKSVXXXXXXXXXXQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQM 146
             P T S            + A    K  EK    + K  E +S   L   S      T+Q+
Sbjct:    70 PVTPS--RPEGGETGLSKTAKRNLKRKEKRRQQQEKEAEALS-RTLDKVSLGD---TAQI 123

Query:   147 NELSVSANPVVENPLSDAKDPGDAGAPGQXXXXXXXXXXXXXXLSEAQQQ-KAGQ-QELK 204
                S    P    PL+ A DP D+ A  +              + E QQ+ +AG+  +  
Sbjct:   124 P--SALQGPQA-TPLA-ASDPSDSAATTEKAKKIKNLRKKLRQVEELQQRIQAGEVSQPS 179

Query:   205 PEQLEKLSK 213
              EQLEKL++
Sbjct:   180 REQLEKLAR 188

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

GO:0045727 "positive regulation of translation" evidence=ISO

UNIPROTKB|Q7Q6B5 wibg "Partner of Y14 and mago" [Anopheles gambiae (taxid:7165)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 38/91 (41%), Positives = 49/91 (53%)

Query:    21 TLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYD 80
             T  +G+ I A T+RPDGT RKP R+R GYVPQ+EV +Y+SKG    K+       PPG  
Sbjct:     6 TDSQGKFIPA-TQRPDGTWRKPRRVRDGYVPQEEVPLYESKG----KQFAQKPALPPGLS 60

Query:    81 PELDAKPKTKSVXXXXXXXXXXQQAALEKGK 111
             PE+  K K K            QQ   ++ K
Sbjct:    61 PEVVQKAKEKRERERLRQAREEQQRKEQQNK 91

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

FB|FBgn0034918 wibg "within bgcn" [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
 Identities = 33/74 (44%), Positives = 47/74 (63%)

Query:    18 LSKTLKEGE-RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEA- 75
             +S  L+  E + +  T+RPDGT RK  R++ GYVPQ+EV +Y+SKG    K+  A ++A 
Sbjct:     1 MSTYLQSSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKG----KQFVAQRQAG 56

Query:    76 -PPGYDPELDAKPK 88
              PPG  P L A+ K
Sbjct:    57 VPPGMCPLLAAESK 70

GO:0005515 "protein binding" evidence=IPI

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

UNIPROTKB|B0WII7 wibg "Partner of Y14 and mago" [Culex quinquefasciatus (taxid:7176)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 34/70 (48%), Positives = 45/70 (64%)

Query:    21 TLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYD 80
             T  +G+ I A T+RPDGT RKP R+R GYVPQ+EV +Y+SKG L  ++       PPG  
Sbjct:     6 TDSQGKFIPA-TQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQK----PSLPPGLP 60

Query:    81 PELDAKPKTK 90
             PE+  K + K
Sbjct:    61 PEMAQKAREK 70

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

UNIPROTKB|A6QPH1 WIBG "Partner of Y14 and mago" [Bos taurus (taxid:9913)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 60/201 (29%), Positives = 87/201 (43%)

Query:    15 MAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQE 74
             MA    T + G + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E
Sbjct:     1 MATPYVTDETGGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPE 57

Query:    75 APPGYDPELDAKPKTKSVXXXXXXXXXXQQAALEKGKIVEKLVDGEIKTEEVVSAENLSH 134
              PPG  PE  A P T S            + A    K  EK    + K E    +  L  
Sbjct:    58 LPPGLSPEATA-PITAS--RPEGGEPALSKTAKRNLKRKEKRRQQQEKGEAEALSRTLEK 114

Query:   135 GSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQXXXXXXXXXXXXXXLSEAQ 194
              S    +      + S +A      P + A D  D+ A  +              + E Q
Sbjct:   115 VSLGETAQVPSAPQASRAA------PTA-ASDQPDSAATTEKAKKIKNLKKKLRQVEELQ 167

Query:   195 QQ-KAGQ-QELKPEQLEKLSK 213
             Q+ +AG+  +   EQLEKL++
Sbjct:   168 QRIQAGEISQPSKEQLEKLAR 188

GO:0035145 "exon-exon junction complex" evidence=ISS

GO:0043022 "ribosome binding" evidence=ISS

GO:0045727 "positive regulation of translation" evidence=ISS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

UNIPROTKB|Q16LW2 wibg "Partner of Y14 and mago" [Aedes aegypti (taxid:7159)]

 Score = 150 (57.9 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 32/65 (49%), Positives = 42/65 (64%)

Query:    27 RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALL-RKELTALQEAPPGYDPELDA 85
             + +  T+RPDGT RKP R+R GYVPQ+EV +Y+SKG L  +K L      PPG  PE+  
Sbjct:    11 KFIPSTQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQKPLL-----PPGMSPEMAQ 65

Query:    86 KPKTK 90
             K + K
Sbjct:    66 KSREK 70

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

UNIPROTKB|F1SPJ0 WIBG "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 58/189 (30%), Positives = 84/189 (44%)

Query:    27 RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK 86
             + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E PPG  PE    
Sbjct:    14 KYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPELPPGLSPEATT- 69

Query:    87 PKTKSVXXXXXXXXXXQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQM 146
             P T S            + A    K  EK    + K E    AE LS    + + +T   
Sbjct:    70 PVTAS--RPEGGEPGLSKTAKRNLKRKEKRRQQQEKGE----AETLSR---TLEKVTLGE 120

Query:   147 NELSVSANPVVENPLSDAKDPGDAGAPGQXXXXXXXXXXXXXXLSEAQQQ-KAGQ-QELK 204
                + SA  V     + A D  D+ A  +              + E QQ+ +AG+  +  
Sbjct:   121 TAQAPSAPQVSRAVPTAASDQPDSAATTEKAKKIKNLKKKLRQVEELQQRIQAGEISQPS 180

Query:   205 PEQLEKLSK 213
              EQLEKL++
Sbjct:   181 KEQLEKLAR 189

GO:0045727 "positive regulation of translation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

UNIPROTKB|Q9BRP8 WIBG "Partner of Y14 and mago" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 60/197 (30%), Positives = 86/197 (43%)

Query:    19 SKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPG 78
             S    E  + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E PPG
Sbjct:     6 SPAATETGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPELPPG 62

Query:    79 YDPELDAKPKTKSVXXXXXXXXXXQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSAS 138
               PE  A P T S            + A    K  EK    + K E    AE LS    +
Sbjct:    63 LSPEATA-PVTPS--RPEGGEPGLSKTAKRNLKRKEKRRQQQEKGE----AEALSR---T 112

Query:   139 TDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQXXXXXXXXXXXXXXLSEAQQQ-K 197
              D ++ +      SA        + A D  D+ A  +              + E QQ+ +
Sbjct:   113 LDKVSLEETAQLPSAPQGSRAAPTAASDQPDSAATTEKAKKIKNLKKKLRQVEELQQRIQ 172

Query:   198 AGQ-QELKPEQLEKLSK 213
             AG+  +   EQLEKL++
Sbjct:   173 AGEVSQPSKEQLEKLAR 189

GO:0003723 "RNA binding" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=IDA

GO:0043022 "ribosome binding" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045727 "positive regulation of translation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.I.9924.1	SubName- Full=Putative uncharacterized protein; (204 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IX.3616.1	SubName- Full=Putative uncharacterized protein; (194 aa)					•	•			0.829
	gw1.VI.2865.1	hypothetical protein (91 aa)					•	•			0.818

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	234
pfam09282	27	pfam09282, Mago-bind, Mago binding	8e-09

>gnl|CDD|117826 pfam09282, Mago-bind, Mago binding

 Score = 49.5 bits (119), Expect = 8e-09
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 25 GERILAPTRRPDGTLRKPIRIRAGYVP 51
          GERI+  T+RPDG+ RK IR+R GY P
Sbjct: 1  GERIIPETQRPDGSFRKEIRVRPGYTP 27

Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
KOG4325	212	consensus Uncharacterized conserved protein [Funct	100.0
PF09282	27	Mago-bind: Mago binding; InterPro: IPR015362 Membe	99.69
KOG2315	566	consensus Predicted translation initiation factor	99.1
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.98
PF14282	106	FlxA: FlxA-like protein	87.64

>KOG4325 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=8.5e-43  Score=297.11  Aligned_cols=197  Identities=46%  Similarity=0.625  Sum_probs=158.9

Q ss_pred             HHHHHHhhhcccccCCCeeccCccCCCCCcccceecCCCCCCccchhhhhchhHHHHHhhhccCCCCCCCCCcCCCC---
Q 026726           10 EELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK---   86 (234)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~i~~s~R~DGt~Rk~~rvr~gy~p~eev~~y~~k~~~~~~~~~~~~~~PPG~~p~~~~k---   86 (234)
                      +..+.||+.+.....|++||.+||||||||||+||||+||+|+|||++|+|++..|++.++.  .+||||+|++.++   
T Consensus         3 aaGkpaAeesgnlkegek~ia~TqRPDGT~RK~~RikeGYtPedEVp~YenK~~kffKek~e--q~PPGlePdaaa~~kp   80 (212)
T KOG4325|consen    3 AAGKPAAEESGNLKEGEKIIAPTQRPDGTLRKPIRIKEGYTPEDEVPKYENKGSKFFKEKAE--QGPPGLEPDAAAKPKP   80 (212)
T ss_pred             ccccchhhhhccccccceeeccccCCCCccccceeccCCCCchhhhhhhhhhhhHHHhhhhh--cCCCCCCCCCCCCCCC
Confidence            46789999999999999999999999999999999999999999999999999999999882  4999999985543   


Q ss_pred             --------ccchhhhhhhHHHHHHHHHHHhhccchhhhcccccchhhhhhhhcccCCCCcchhhhhhhhhccccCCCCcC
Q 026726           87 --------PKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVE  158 (234)
Q Consensus        87 --------~~skaakKNaKRKEkrkq~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~  158 (234)
                              ..++++++|.||+++++++. +++..   .++|           ..+..+..|.-..+.|..++++.+..+|
T Consensus        81 k~~eggEpglsktakRnlKkeek~qaqa-EK~ea---eea~-----------S~sldsqkVnleasa~~~~apqgn~aa~  145 (212)
T KOG4325|consen   81 KAAEGGEPGLSKTAKRNLKKEEKLQAQA-EKAEA---EEAG-----------SASLDSQKVNLEASAMEALAPQGNNAAC  145 (212)
T ss_pred             CcccCCCccchhHHHhhhhHHHHHHHHH-Hhhcc---hhhh-----------ccccCccccchhhhhhhccCcccCcccc
Confidence                    26888999999988877643 33322   1122           1233344566677777777777777665


Q ss_pred             CCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhcHHHHHHHHHHHHHh
Q 026726          159 NPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEK  227 (234)
Q Consensus       159 ~~~~~~~~~~~~~~~~~e~~KkiRnLkKKLrqIE~Lk~k~~G~~L~~eQleKl~k~~el~~EL~~Le~~  227 (234)
                      +..    +........++.+||||+|+||||+.|+|++++..+.|+++|++|+.+..+|+.|++.||..
T Consensus       146 ~aA----~d~~dsaa~edkaKkIkaLKKKiR~tEalQQkiaagdln~~qkEkfeKLaerRa~eeaLED~  210 (212)
T KOG4325|consen  146 GAA----PDPGDSAAGEDKAKKIKALKKKIRLTEALQQKIAAGDLNPEQKEKFEKLAERRAEEEALEDK  210 (212)
T ss_pred             cCC----CCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence            532    22222234679999999999999999999999999999999999999999999999999864

>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin

Probab=99.69  E-value=4.8e-18  Score=105.46  Aligned_cols=27  Identities=63%  Similarity=1.195  Sum_probs=14.0

Q ss_pred             CCeeccCccCCCCCcccceecCCCCCC
Q 026726           25 GERILAPTRRPDGTLRKPIRIRAGYVP   51 (234)
Q Consensus        25 g~~~i~~s~R~DGt~Rk~~rvr~gy~p   51 (234)
                      |++|||+||||||||||+||||+||+|
T Consensus         1 Ger~I~~s~RpDGt~RK~irvr~GY~P   27 (27)
T PF09282_consen    1 GERIIPASQRPDGTWRKEIRVRPGYTP   27 (27)
T ss_dssp             --EEE--EE-TTS-EE--EE--TT---
T ss_pred             CccCcCcccCCCCCcccceeccCCcCC
Confidence            799999999999999999999999998

They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.3e-10  Score=113.87  Aligned_cols=51  Identities=35%  Similarity=0.418  Sum_probs=48.5

Q ss_pred             chHHHHHHHHHHHHHHHHHH-HHhccCCCCHHHHHHHhcHHHHHHHHHHHHH
Q 026726          176 DIDKRIRAIKKKIRLSEAQQ-QKAGQQELKPEQLEKLSKLEGWRNELKLLEE  226 (234)
Q Consensus       176 e~~KkiRnLkKKLrqIE~Lk-~k~~G~~L~~eQleKl~k~~el~~EL~~Le~  226 (234)
                      +.+||||+|.||||.||.|+ +...|+.|+++||+||.++..|+.||+.|++
T Consensus       515 ~~ekKir~L~kkLraIe~LK~r~a~Ge~Le~nQl~kIq~E~~~l~ELk~L~~  566 (566)
T KOG2315|consen  515 EEEKKIRSLLKKLRAIEALKERMANGEQLEVNQLNKIQKEPKLLSELKKLGW  566 (566)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHhhhHHHHHHHHhhcC
Confidence            88999999999999999999 6688999999999999999999999999963

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.98  E-value=0.0011  Score=65.72  Aligned_cols=51  Identities=31%  Similarity=0.342  Sum_probs=46.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHH-HHhccCCCCHHHHHHHhcHHHHHHHHHHH
Q 026726          174 GQDIDKRIRAIKKKIRLSEAQQ-QKAGQQELKPEQLEKLSKLEGWRNELKLL  224 (234)
Q Consensus       174 ~~e~~KkiRnLkKKLrqIE~Lk-~k~~G~~L~~eQleKl~k~~el~~EL~~L  224 (234)
                      ....+.|||.|-||||.|+.|+ +...|++|+..|+-||..+.+++.||+.|
T Consensus       507 e~s~e~ki~sl~~~lRaIe~lker~~~~eele~~qv~kietee~VlsElk~l  558 (561)
T COG5354         507 EYSDEDKIRSLLKKLRAIEALKERMRSGEELEVIQVNKIETEEEVLSELKEL  558 (561)
T ss_pred             ccCHHHHHHHHHHHhhhhhcchhhcccccchhhhhhhhhhhHHHHHHHhhhc
Confidence            3344559999999999999999 66889999999999999999999999988

>PF14282 FlxA: FlxA-like protein

Probab=87.64  E-value=6.2  Score=31.28  Aligned_cols=54  Identities=22%  Similarity=0.382  Sum_probs=37.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHhcHHHHHHHHHHHHHhhhhh
Q 026726          176 DIDKRIRAIKKKIRLSEAQQQK-AGQQELKPEQLEKLSKLEGWRNELKLLEEKKADL  231 (234)
Q Consensus       176 e~~KkiRnLkKKLrqIE~Lk~k-~~G~~L~~eQleKl~k~~el~~EL~~Le~~la~l  231 (234)
                      ..+..|..|++.|..+.+-=.. .....|++++..  .+...|..+|..|+.+++.|
T Consensus        16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~ql   70 (106)
T PF14282_consen   16 SSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQL   70 (106)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            3478888888777666543333 344777777653  45788999999999888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	234
1rk8_C	58	Structure Of The Cytosolic Protein Pym Bound To The		1e-06

>pdb|1RK8|C Chain C, Structure Of The Cytosolic Protein Pym Bound To The Mago- Y14 Core Of The Exon Junction Complex Length = 58

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 5/59 (8%)
Query: 18 LSKTLKEGE-RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEA 75
          +S  L+  E + +  T+RPDGT RK  R++ GYVPQ+EV +Y+SKG    K+  A ++A
Sbjct: 1  MSTYLQSSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKG----KQFVAQRQA 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
1rk8_C	58	PYM protein, within the BGCN gene intron protein,	3e-13

>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1 Length = 58

 Score = 61.7 bits (149), Expect = 3e-13
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 23 KEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKE 68
              + +  T+RPDGT RK  R++ GYVPQ+EV +Y+SKG     +
Sbjct: 7  SSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQ 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
1rk8_C	58	PYM protein, within the BGCN gene intron protein,	99.89

>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1

Probab=99.89  E-value=1e-24  Score=155.80  Aligned_cols=49  Identities=41%  Similarity=0.742  Sum_probs=29.3

Q ss_pred             cccCCCeeccCccCCCCCcccceecCCCCCCccchhhhhchhHHHHHhh
Q 026726           21 TLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKEL   69 (234)
Q Consensus        21 ~~~~g~~~i~~s~R~DGt~Rk~~rvr~gy~p~eev~~y~~k~~~~~~~~   69 (234)
                      ...+|++|||+||||||||||+||||+||+|||||++|++++++++++.
T Consensus         5 ~~~~g~~~I~~s~RpDGT~RK~irVr~GY~Pqeev~~Y~~k~~~~~~~r   53 (58)
T 1rk8_C            5 LQSSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQR   53 (58)
T ss_dssp             EEETTEEEECCEECTTSCEECCEECCTTCCC------------------
T ss_pred             EccCCCEEcccccCCCCccccceeccCCcCCHHHhhhhhhhhhHHHHhh
Confidence            4568999999999999999999999999999999999999999665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	234
d1rk8c_	33	b.72.3.1 (C:) Pym (Within the bgcn gene intron pro	2e-04

>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
family: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
domain: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.7 bits (82), Expect = 2e-04
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 24 EGERILAPTRRPDGTLRKPIRIRAGYVP 51
             + +  T+RPDGT RK  R++ GYVP
Sbjct: 6  SEGKFIPATKRPDGTWRKARRVKDGYVP 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	234
d1rk8c_	33	Pym (Within the bgcn gene intron protein, WIBG), N	99.66

>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
family: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
domain: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=6.4e-18  Score=105.82  Aligned_cols=32  Identities=47%  Similarity=0.867  Sum_probs=29.6

Q ss_pred             cccccCCCeeccCccCCCCCcccceecCCCCCC
Q 026726           19 SKTLKEGERILAPTRRPDGTLRKPIRIRAGYVP   51 (234)
Q Consensus        19 ~~~~~~g~~~i~~s~R~DGt~Rk~~rvr~gy~p   51 (234)
                      |+.+.+| .|||+||||||||||++||++||||
T Consensus         2 yv~d~~G-~~i~atqRpDGtWRK~rrvk~gyvP   33 (33)
T d1rk8c_           2 YLQSSEG-KFIPATKRPDGTWRKARRVKDGYVP   33 (33)
T ss_dssp             CEEETTE-EEECCEECTTSCEECCEECCTTCCC
T ss_pred             cEecCCC-cEeccccCCCCccccceecccCcCC
Confidence            6777776 8999999999999999999999998