Citrus Sinensis ID: 026728

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERSY
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEcEEEEEEccEEEEcccccEEEEEEcccccEEEEEEEcccccccccEEEEcccEEEEEccccccEEEEEEEcccccEEEEEccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHcccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEccEEEEcccEEcccccccEEEEEEccccEEEEEEEEcccccccccEEEEccccEEEEccccccEEEEEEEccccccEEEEEEccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHcccHHHHHHHHccHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgssstaasPAMQEILLEFRAgkmtfdgkkvvpdsrkgLVRIArgehglihfqwldrtrnvveddqivfpheAVFEKVNQASGRVYILKFNTDDRKFFLwmqepkaeedsqlcnsvnyfinrplvfvneeeldasvplqvsedmveddvssragnlvvpnlggeaisdvtsssgpvklEDLQRIFSnigpaditedpdgglglgdilkpdlimplietlpleqrlapylpersy
Flexible Loop (DISEMBL)
mgssstaaspaMQEILLEFRAGkmtfdgkkvvpdsrKGLVRIArgehglihfqwldrTRNVVEDDQIVFPHEAVfekvnqasgRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIetlpleqrlapylpersy
Low Complexity Region (SEG)
MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEdpdgglglgdilkpdliMPLIETLPLEQRLAPYLPERSY
Disordered region (IsUnstruct)
**************ILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKA*EDSQLCNSVNYFINRPLVFVNEEELDA**********************VV*********************DLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRL*********
Disordered Region (DISOPRED)
*****************EFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP*********************************************************************************DILKPDLIMPLIETLPLEQRLAPYLP****
Disordered Region (DISEMBL)
**********AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSE********SRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERSY
Disordered Region (DISPRO)
************QEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP*****************************************************KLEDLQRIFSNIG**********GLGLGDILKPDLIMPLIETLPLEQRLAPYLPE*S*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
Q6NZ09	410	Proteasomal ubiquitin rec	yes	no	0.470	0.268	0.513	1e-30
Q6P877	404	Proteasomal ubiquitin rec	yes	no	0.470	0.272	0.504	3e-30
Q16186	407	Proteasomal ubiquitin rec	yes	no	0.482	0.277	0.508	8e-30
Q6GN67	404	Proteasomal ubiquitin rec	N/A	no	0.470	0.272	0.495	8e-30
Q9JMB5	407	Proteasomal ubiquitin rec	yes	no	0.470	0.270	0.513	1e-29
A1L5A6	407	Proteasomal ubiquitin rec	yes	no	0.470	0.270	0.513	2e-29
Q7ZXD6	404	Proteasomal ubiquitin rec	N/A	no	0.470	0.272	0.495	2e-29
Q9JKV1	407	Proteasomal ubiquitin rec	yes	no	0.470	0.270	0.513	2e-29
Q98SH3	406	Proteasomal ubiquitin rec	yes	no	0.470	0.270	0.504	4e-29
Q7K2G1	389	Proteasomal ubiquitin rec	yes	no	0.457	0.275	0.5	2e-27

>sp|Q6NZ09|ADRM1_DANRE Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1 SV=1

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKMT  G  V PD RKG V I + +  LIHF W DRT   VEDD I+FP + 
Sbjct: 20  KYLVEFRAGKMTLKGSTVTPDKRKGTVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDC 79

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++VNQ  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 80  EFKRVNQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDDEYCRKVNEYLNNP 130

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.
Danio rerio (taxid: 7955)

>sp|Q6P877|ADRM1_XENTR Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1 PE=2 SV=1

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 75/111 (67%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP + 
Sbjct: 20  KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDC 79

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++V+Q  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 80  EFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNP 130

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Xenopus tropicalis (taxid: 8364)

>sp|Q16186|ADRM1_HUMAN Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2

 Score =  130 bits (327), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 11  AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFP 70
           A  + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP
Sbjct: 18  ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFP 77

Query: 71  HEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 78  DDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Homo sapiens (taxid: 9606)

>sp|Q6GN67|ADM1A_XENLA Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus laevis GN=adrm1-a PE=2 SV=2

 Score =  130 bits (327), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 75/111 (67%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP + 
Sbjct: 20  KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDC 79

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++V+Q  +GRVY+LKF    ++ F WMQEPK ++D + C  +N ++N P
Sbjct: 80  EFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKLNEYLNNP 130

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome (By similarity). Required during gastrulation.

Xenopus laevis (taxid: 8355)

>sp|Q9JMB5|ADRM1_RAT Proteasomal ubiquitin receptor ADRM1 OS=Rattus norvegicus GN=Adrm1 PE=2 SV=2

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP + 
Sbjct: 21  KYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDC 80

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N P
Sbjct: 81  EFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131

Functions as a proteasomal ubiquitin receptor. Recruits and activates the deubiquitinating enzyme UCHL5 at the 26S proteasome.

Rattus norvegicus (taxid: 10116)

>sp|A1L5A6|ADRM1_BOVIN Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus GN=ADRM1 PE=2 SV=1

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP + 
Sbjct: 21  KYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDC 80

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 81  EFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Bos taurus (taxid: 9913)

>sp|Q7ZXD6|ADM1B_XENLA Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus laevis GN=adrm1-b PE=2 SV=1

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 75/111 (67%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   V+DD I+FP + 
Sbjct: 20  KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVDDDLIIFPDDC 79

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++V+Q  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 80  EFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 130

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Xenopus laevis (taxid: 8355)

>sp|Q9JKV1|ADRM1_MOUSE Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP + 
Sbjct: 21  KYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDC 80

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N P
Sbjct: 81  EFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Mus musculus (taxid: 10090)

>sp|Q98SH3|ADRM1_CHICK Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 74/111 (66%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP + 
Sbjct: 21  KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDC 80

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++V Q  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 81  EFKRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 131

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Gallus gallus (taxid: 9031)

>sp|Q7K2G1|ADRM1_DROME Proteasomal ubiquitin receptor ADRM1 homolog OS=Drosophila melanogaster GN=CG13349 PE=1 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 74/108 (68%), Gaps = 1/108 (0%)

Query: 17  LEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFE 76
           +EFRAG+M   GK V PD RKGLV + + + GL+HF W DRT   VEDD IVFP +  ++
Sbjct: 18  VEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTSGKVEDDLIVFPDDFEYK 77

Query: 77  KVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
           +V+Q  +GRVY+LKF +  R+ F WMQEPK ++D + C  +N  +N P
Sbjct: 78  RVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNP 125

May function as a proteasomal ubiquitin receptor. May promote the deubiquitinating activity associated with the 26S proteasome.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
225445652	320	PREDICTED: proteasomal ubiquitin recepto	1.0	0.731	0.777	1e-102
356513237	321	PREDICTED: proteasomal ubiquitin recepto	0.995	0.725	0.760	2e-99
356523747	321	PREDICTED: proteasomal ubiquitin recepto	0.995	0.725	0.760	2e-99
388502850	318	unknown [Lotus japonicus]	0.987	0.726	0.767	2e-98
224087341	313	predicted protein [Populus trichocarpa]	0.961	0.718	0.768	5e-98
255563882	557	adhesion regulating molecule, putative [	0.940	0.394	0.800	5e-96
388496234	316	unknown [Medicago truncatula]	0.995	0.737	0.744	1e-95
357520621	312	Proteasomal ubiquitin receptor ADRM1 [Me	0.952	0.714	0.746	2e-92
18401185	300	regulatory particle non-ATPase 13 [Arabi	0.965	0.753	0.682	7e-85
13926227	300	At2g26590/T9J22.26 [Arabidopsis thaliana	0.965	0.753	0.682	9e-85

>gi|225445652|ref|XP_002265472.1| PREDICTED: proteasomal ubiquitin receptor ADRM1 [Vitis vinifera] gi|297736028|emb|CBI24066.3| unnamed protein product [Vitis vinifera]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/234 (77%), Positives = 199/234 (85%)

Query: 1   MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRN 60
           MGSSS    P MQEI+LEFRAGKM F+G +V PD+RKGLVRIA+GE GL+HFQWLDRT N
Sbjct: 1   MGSSSADTFPVMQEIMLEFRAGKMVFEGTRVTPDARKGLVRIAKGEEGLVHFQWLDRTNN 60

Query: 61  VVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           V+EDDQIVFP EAVFEKVNQASGR+YILKFNTD+RKFF WMQEPKAE DSQLCNSVNY I
Sbjct: 61  VLEDDQIVFPDEAVFEKVNQASGRIYILKFNTDNRKFFFWMQEPKAEGDSQLCNSVNYHI 120

Query: 121 NRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLED 180
           NRPL F+ EEE D S P+Q+SEDMVEDD+SSRAGNLV P+LG E  SDVTS SGPVKL D
Sbjct: 121 NRPLEFLGEEEQDVSGPVQISEDMVEDDISSRAGNLVGPSLGAEVTSDVTSLSGPVKLAD 180

Query: 181 LQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERSY 234
           LQRI SNI PAD   DPD GLGL DILKPDLI+PLIETLP+EQRLA YLPE  +
Sbjct: 181 LQRILSNIEPADGAGDPDEGLGLADILKPDLILPLIETLPMEQRLASYLPEGQW 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513237|ref|XP_003525320.1| PREDICTED: proteasomal ubiquitin receptor ADRM1-like [Glycine max]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 178/234 (76%), Positives = 201/234 (85%), Gaps = 1/234 (0%)

Query: 1   MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRN 60
           M SSS    PA+QE++LEFRAGKM  + K+VVPD+RKGLVRIARGE GL+HFQWLDRT+N
Sbjct: 1   MSSSSADVFPAIQEVMLEFRAGKMFLEEKRVVPDTRKGLVRIARGEEGLVHFQWLDRTQN 60

Query: 61  VVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           VVEDDQI+FP+EA+FEKVNQ SGRVYILKFN+DDRKFF WMQE  A+ DSQLC+SVN +I
Sbjct: 61  VVEDDQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADGDSQLCSSVNDYI 120

Query: 121 NRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLED 180
           NRPL  + EEE D S+PLQ+SEDM EDD+SSRA NL +PNLG EA SDVT SSGPVKLED
Sbjct: 121 NRPLELLGEEEPDGSLPLQISEDMTEDDISSRAANLGIPNLGVEATSDVT-SSGPVKLED 179

Query: 181 LQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERSY 234
           LQRI SNIGPAD   DPDGGLGLGDILKPDLIMPL++ LPLEQRLAPYLPE  +
Sbjct: 180 LQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDMLPLEQRLAPYLPEGKW 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523747|ref|XP_003530496.1| PREDICTED: proteasomal ubiquitin receptor ADRM1-like [Glycine max]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 178/234 (76%), Positives = 202/234 (86%), Gaps = 1/234 (0%)

Query: 1   MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRN 60
           M SSS    PA+ E++LEFRAGKM  + K+VVPD+RKGLVRIARGE GL+HFQWLDRT+N
Sbjct: 1   MSSSSADVFPAILEVMLEFRAGKMFLEEKRVVPDTRKGLVRIARGEEGLVHFQWLDRTQN 60

Query: 61  VVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           +VEDDQI+FP+EA+FEKVNQ SGRVYILKFN+DDRKFF WMQE  A++DSQLC+SVN +I
Sbjct: 61  IVEDDQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADDDSQLCSSVNDYI 120

Query: 121 NRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLED 180
           NRPL  + EEE D S+PLQVSEDM EDD+SSRA NL +PNLG EA SDVT SSGPVKLED
Sbjct: 121 NRPLELLGEEEPDGSLPLQVSEDMAEDDISSRAANLGIPNLGVEATSDVT-SSGPVKLED 179

Query: 181 LQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERSY 234
           LQRI SNIGPAD   DPDGGLGLGDILKPDLIMPL++TLPLEQRLAPYLPE  +
Sbjct: 180 LQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDTLPLEQRLAPYLPEGEW 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502850|gb|AFK39491.1| unknown [Lotus japonicus]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/232 (76%), Positives = 199/232 (85%), Gaps = 1/232 (0%)

Query: 3   SSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVV 62
           SSS+ A PA+QEI+LEFRAGKM+ +GK+VVPD+RKGLVRIARGE GL+HFQWLDRT NV+
Sbjct: 2   SSSSDAFPAIQEIMLEFRAGKMSLEGKRVVPDTRKGLVRIARGEEGLVHFQWLDRTLNVI 61

Query: 63  EDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122
           EDDQI+FP+EAVFEKVNQASGRVYILKFNTDDRKFF WMQE  A+ DSQLC+SVN +INR
Sbjct: 62  EDDQIIFPNEAVFEKVNQASGRVYILKFNTDDRKFFFWMQESNADNDSQLCSSVNDYINR 121

Query: 123 PLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQ 182
            L F+ EEEL+  +PLQVSEDM EDD+SSRA NL  PNLG EA SDVT SSGPV+LEDLQ
Sbjct: 122 QLDFLGEEELNGDLPLQVSEDMAEDDISSRAANLFAPNLGVEATSDVT-SSGPVRLEDLQ 180

Query: 183 RIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERSY 234
           RI  NIG AD   DPDGGLGLGDILKPDLIMPL+E L LEQ LAPYLPE  +
Sbjct: 181 RILGNIGSADSIIDPDGGLGLGDILKPDLIMPLMEMLSLEQHLAPYLPEGKW 232

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087341|ref|XP_002308128.1| predicted protein [Populus trichocarpa] gi|222854104|gb|EEE91651.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (930), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 179/233 (76%), Positives = 196/233 (84%), Gaps = 8/233 (3%)

Query: 2   GSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNV 61
            SSS  A PAMQEI+LEFRAGKM FDGKKVVPD RKGLVR+ RGE GL+HFQWLDR  N 
Sbjct: 3   ASSSAEAIPAMQEIMLEFRAGKMVFDGKKVVPDLRKGLVRVGRGEEGLLHFQWLDRNLNA 62

Query: 62  VEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121
           VEDDQI+FP EAVFEKVNQ SGRVYILKFNTDDRK F WMQEPKAEEDSQLC+SVNY+IN
Sbjct: 63  VEDDQIIFPEEAVFEKVNQVSGRVYILKFNTDDRKLFFWMQEPKAEEDSQLCSSVNYYIN 122

Query: 122 RPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDL 181
            PL F++EEE DA+ PLQVSEDM+ED+VSSRAG+LVVPNLG EAISDVTSSSGPVK+EDL
Sbjct: 123 LPLEFLDEEEPDAAAPLQVSEDMLEDNVSSRAGDLVVPNLGAEAISDVTSSSGPVKMEDL 182

Query: 182 QRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERSY 234
           QRI SNIG          GLGLGD+LKPDLIMPLIETL LE+ L  +LPE  +
Sbjct: 183 QRILSNIGAR--------GLGLGDLLKPDLIMPLIETLSLEEGLTSHLPEGHW 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563882|ref|XP_002522941.1| adhesion regulating molecule, putative [Ricinus communis] gi|223537835|gb|EEF39452.1| adhesion regulating molecule, putative [Ricinus communis]

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 177/221 (80%), Positives = 194/221 (87%), Gaps = 1/221 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           E +LEFRAGKM F+ KKV+PD+RKGLVRIARGE GL+HFQWLDR RNVVEDDQI+FP EA
Sbjct: 252 ETMLEFRAGKMFFEEKKVIPDTRKGLVRIARGEEGLVHFQWLDRNRNVVEDDQIIFPDEA 311

Query: 74  VFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELD 133
           VFEKVNQASGRVYILKFNTDDRKFF WMQEPKAE+D QLC+SVNY+INRPL F+ EEE D
Sbjct: 312 VFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDWQLCSSVNYYINRPLEFLGEEEPD 371

Query: 134 ASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADI 193
           A  PLQVSEDMVEDD+SSRAGNLVVPNLG E +SDV+SSSGPVKLEDLQRI SNIG    
Sbjct: 372 AYAPLQVSEDMVEDDISSRAGNLVVPNLGAE-VSDVSSSSGPVKLEDLQRILSNIGHGGG 430

Query: 194 TEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERSY 234
             DPD GLGLGDILKPDLI+P I+TLPLE+RLA YLPE  +
Sbjct: 431 AGDPDAGLGLGDILKPDLILPFIDTLPLEERLASYLPEGQW 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496234|gb|AFK36183.1| unknown [Medicago truncatula]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 175/235 (74%), Positives = 199/235 (84%), Gaps = 2/235 (0%)

Query: 1   MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRN 60
           M SSS  A PA+QE LLEFRAGKM+ +GK+VVPD+RKGLVRIARGE GL+HFQWLDRT N
Sbjct: 1   MSSSSIDAFPAIQETLLEFRAGKMSLEGKRVVPDARKGLVRIARGEEGLVHFQWLDRTLN 60

Query: 61  VVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           VVEDDQI+FP+EA+FE+VNQ SGRVYILKFN+DDRKFF WMQE  A+ DSQLC+SVN ++
Sbjct: 61  VVEDDQIIFPNEAIFEQVNQTSGRVYILKFNSDDRKFFFWMQESNADNDSQLCSSVNDYL 120

Query: 121 NRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLED 180
           NRPL  + EEE D S+PL+VSEDMVEDD+SSRA NLVVPN G +A SDVT SSGPVKL D
Sbjct: 121 NRPLELLGEEEPDVSLPLEVSEDMVEDDISSRAANLVVPNFGVDATSDVT-SSGPVKLAD 179

Query: 181 LQRIFSNIGP-ADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERSY 234
           LQRI SNIGP AD   DPD    LGDILKPDLI+PL+ETLPLEQRLA YLPE ++
Sbjct: 180 LQRILSNIGPAADSILDPDESFELGDILKPDLILPLMETLPLEQRLASYLPEGTW 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520621|ref|XP_003630599.1| Proteasomal ubiquitin receptor ADRM1 [Medicago truncatula] gi|355524621|gb|AET05075.1| Proteasomal ubiquitin receptor ADRM1 [Medicago truncatula]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/225 (74%), Positives = 193/225 (85%), Gaps = 2/225 (0%)

Query: 11  AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFP 70
           ++ E LLEFRAGKM+ +GK+VVPD+RKGLVRIARGE GL+HFQWLDRT NVVEDDQI+FP
Sbjct: 7   SVNETLLEFRAGKMSLEGKRVVPDARKGLVRIARGEEGLVHFQWLDRTLNVVEDDQIIFP 66

Query: 71  HEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEE 130
           +EA+FE+VNQ SGRVYILKFN+DDRKFF WMQE  A+ DSQLC+SVN ++NRPL  + EE
Sbjct: 67  NEAIFEQVNQTSGRVYILKFNSDDRKFFFWMQESNADNDSQLCSSVNDYLNRPLELLGEE 126

Query: 131 ELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGP 190
           E D S+PL+VSEDMVEDD+SSRA NLVVPN G +A SDVT SSGPVKL DLQRI SNIGP
Sbjct: 127 EPDVSLPLEVSEDMVEDDISSRAANLVVPNFGVDATSDVT-SSGPVKLADLQRILSNIGP 185

Query: 191 -ADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERSY 234
            AD   DPD G  LGDILKPDLI+PL+ETLPLEQRLA YLPE ++
Sbjct: 186 AADSILDPDEGFELGDILKPDLILPLMETLPLEQRLASYLPEGTW 230

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401185|ref|NP_565626.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana] gi|79323128|ref|NP_001031424.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana] gi|79323137|ref|NP_001031425.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana] gi|20196943|gb|AAC14506.2| expressed protein [Arabidopsis thaliana] gi|330252768|gb|AEC07862.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana] gi|330252769|gb|AEC07863.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana] gi|330252770|gb|AEC07864.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana]

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 157/230 (68%), Positives = 189/230 (82%), Gaps = 4/230 (1%)

Query: 4   SSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVE 63
           SS+ A P MQEI+LEFRAGKM+  G +VVPD+RKGLVRIARG+ GLIHFQWLDR +N VE
Sbjct: 2   SSSEAFPVMQEIMLEFRAGKMSLQGTRVVPDARKGLVRIARGDEGLIHFQWLDRNQNTVE 61

Query: 64  DDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
           DDQIVFP EA+FEKVNQ+S RVYILKFN+DDRK F WMQEP+AE D++LC+SVN ++N+P
Sbjct: 62  DDQIVFPDEALFEKVNQSSDRVYILKFNSDDRKLFFWMQEPRAEGDAELCSSVNQYLNQP 121

Query: 124 LVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQR 183
           L F  EE L A++  ++ EDM ED+ SSRAGNLVVPNL  E +SDVTSSSGPVKL DLQR
Sbjct: 122 LEFPGEEGLAAAITEEL-EDMAEDNTSSRAGNLVVPNLSSE-VSDVTSSSGPVKLADLQR 179

Query: 184 IFSNI--GPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPE 231
           I +N+  GP  I  D D GL LGDILKP+LIMPL+E LP+++RL+ +LPE
Sbjct: 180 ILNNLSGGPVGIAGDQDEGLALGDILKPELIMPLLEALPVQERLSSHLPE 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13926227|gb|AAK49589.1|AF372873_1 At2g26590/T9J22.26 [Arabidopsis thaliana] gi|27363336|gb|AAO11587.1| At2g26590/T9J22.26 [Arabidopsis thaliana]

 Score =  318 bits (816), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 157/230 (68%), Positives = 189/230 (82%), Gaps = 4/230 (1%)

Query: 4   SSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVE 63
           SS+ A P MQEI+LEFRAGKM+  G +VVPD+RKGLVRIARG+ GLIHFQWLDR +N VE
Sbjct: 2   SSSEAFPVMQEIMLEFRAGKMSLQGTRVVPDARKGLVRIARGDEGLIHFQWLDRNQNTVE 61

Query: 64  DDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
           DDQIVFP EA+FEKVNQ+S RVYILKFN+DDRK F WMQEP+AE D++LC+SVN ++N+P
Sbjct: 62  DDQIVFPDEALFEKVNQSSDRVYILKFNSDDRKLFFWMQEPRAEGDAELCSSVNQYLNQP 121

Query: 124 LVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQR 183
           L F  EE L A++  ++ EDM ED+ SSRAGNLVVPNL  E +SDVTSSSGPVKL DLQR
Sbjct: 122 LEFPGEEGLAAAITEEL-EDMAEDNTSSRAGNLVVPNLSSE-VSDVTSSSGPVKLADLQR 179

Query: 184 IFSNI--GPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPE 231
           I +N+  GP  I  D D GL LGDILKP+LIMPL+E LP+++RL+ +LPE
Sbjct: 180 ILNNLSGGPVGIAGDQDEGLALGDILKPELIMPLLEALPVQERLSSHLPE 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2066200	300	RPN13 "AT2G26590" [Arabidopsis	0.965	0.753	0.626	2.3e-71
ZFIN|ZDB-GENE-040426-905	479	adrm1 "adhesion regulating mol	0.461	0.225	0.522	1.4e-33
UNIPROTKB|Q6P877	404	adrm1 "Proteasomal ubiquitin r	0.461	0.267	0.513	1.9e-33
UNIPROTKB|F1NEQ9	409	ADRM1 "Proteasomal ubiquitin r	0.461	0.264	0.513	3.8e-33
UNIPROTKB|F1P4I9	405	ADRM1 "Proteasomal ubiquitin r	0.461	0.266	0.513	3.8e-33
UNIPROTKB|Q98SH3	406	ADRM1 "Proteasomal ubiquitin r	0.461	0.266	0.513	3.8e-33
UNIPROTKB|Q16186	407	ADRM1 "Proteasomal ubiquitin r	0.482	0.277	0.508	6.2e-33
UNIPROTKB|A1L5A6	407	ADRM1 "Proteasomal ubiquitin r	0.461	0.265	0.522	1e-32
MGI|MGI:1929289	407	Adrm1 "adhesion regulating mol	0.461	0.265	0.522	2.1e-32
RGD|69248	407	Adrm1 "adhesion regulating mol	0.461	0.265	0.522	2.1e-32

TAIR|locus:2066200 RPN13 "AT2G26590" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 144/230 (62%), Positives = 175/230 (76%)

Query:     4 SSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVE 63
             SS+ A P MQEI+LEFRAGKM+  G +VVPD+RKGLVRIARG+ GLIHFQWLDR +N VE
Sbjct:     2 SSSEAFPVMQEIMLEFRAGKMSLQGTRVVPDARKGLVRIARGDEGLIHFQWLDRNQNTVE 61

Query:    64 DDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             DDQIVFP EA+FEKVNQ+S RVYILKFN+DDRK F WMQEP+AE D++LC+SVN ++N+P
Sbjct:    62 DDQIVFPDEALFEKVNQSSDRVYILKFNSDDRKLFFWMQEPRAEGDAELCSSVNQYLNQP 121

Query:   124 LVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQR 183
             L F  EE L A++  ++ EDM ED+ SSRAGNLVVPNL  E +SDVTSSSGPVKL DLQR
Sbjct:   122 LEFPGEEGLAAAITEEL-EDMAEDNTSSRAGNLVVPNLSSE-VSDVTSSSGPVKLADLQR 179

Query:   184 IFSNI--GPADITEXXXXXXXXXXXXXXXXXMPLIETLPLEQRLAPYLPE 231
             I +N+  GP  I                   MPL+E LP+++RL+ +LPE
Sbjct:   180 ILNNLSGGPVGIAGDQDEGLALGDILKPELIMPLLEALPVQERLSSHLPE 229

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007155 "cell adhesion" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

ZFIN|ZDB-GENE-040426-905 adrm1 "adhesion regulating molecule 1" [Danio rerio (taxid:7955)]

 Score = 313 (115.2 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
 Identities = 57/109 (52%), Positives = 73/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKMT  G  V PD RKG V I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    91 LVEFRAGKMTLKGSTVTPDKRKGTVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEF 150

Query:    76 EKVNQAS-GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++VNQ + GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:   151 KRVNQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDDEYCRKVNEYLNNP 199

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA;ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

UNIPROTKB|Q6P877 adrm1 "Proteasomal ubiquitin receptor ADRM1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 310 (114.2 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
 Identities = 56/109 (51%), Positives = 74/109 (67%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    22 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDCEF 81

Query:    76 EKVNQAS-GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V+Q + GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    82 KRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNP 130

GO:0000502 "proteasome complex" evidence=ISS

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

UNIPROTKB|F1NEQ9 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 304 (112.1 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 56/109 (51%), Positives = 73/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    26 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEF 85

Query:    76 EKVNQAS-GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q + GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    86 KRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 134

GO:0000502 "proteasome complex" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

UNIPROTKB|F1P4I9 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 304 (112.1 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 56/109 (51%), Positives = 73/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    22 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEF 81

Query:    76 EKVNQAS-GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q + GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    82 KRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 130

GO:0000502 "proteasome complex" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

UNIPROTKB|Q98SH3 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 304 (112.1 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 56/109 (51%), Positives = 73/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    23 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEF 82

Query:    76 EKVNQAS-GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q + GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    83 KRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 131

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

UNIPROTKB|Q16186 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Homo sapiens (taxid:9606)]

 Score = 310 (114.2 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
 Identities = 58/114 (50%), Positives = 75/114 (65%)

Query:    11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFP 70
             A  + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP
Sbjct:    18 ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFP 77

Query:    71 HEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
              +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    78 DDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131

GO:0000502 "proteasome complex" evidence=IDA

GO:0061133 "endopeptidase activator activity" evidence=IDA

GO:0043248 "proteasome assembly" evidence=IDA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IMP

GO:0002020 "protease binding" evidence=IPI

GO:0070628 "proteasome binding" evidence=IDA

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010950 "positive regulation of endopeptidase activity" evidence=IDA

UNIPROTKB|A1L5A6 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Bos taurus (taxid:9913)]

 Score = 307 (113.1 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 57/109 (52%), Positives = 73/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    23 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEF 82

Query:    76 EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    83 KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

MGI|MGI:1929289 Adrm1 "adhesion regulating molecule 1" [Mus musculus (taxid:10090)]

 Score = 305 (112.4 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
 Identities = 57/109 (52%), Positives = 72/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    23 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEF 82

Query:    76 EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N P
Sbjct:    83 KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131

GO:0000502 "proteasome complex" evidence=ISO

GO:0001541 "ovarian follicle development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISO

GO:0007286 "spermatid development" evidence=IMP

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISO

GO:0033081 "regulation of T cell differentiation in thymus" evidence=IMP

GO:0042699 "follicle-stimulating hormone signaling pathway" evidence=IMP

GO:0043248 "proteasome assembly" evidence=ISO

GO:0048477 "oogenesis" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

GO:0060009 "Sertoli cell development" evidence=IMP

GO:0060399 "positive regulation of growth hormone receptor signaling pathway" evidence=IMP

GO:0060612 "adipose tissue development" evidence=IMP

GO:0061133 "endopeptidase activator activity" evidence=ISO

GO:0070628 "proteasome binding" evidence=ISO

GO:0072520 "seminiferous tubule development" evidence=IMP

RGD|69248 Adrm1 "adhesion regulating molecule 1" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
 Identities = 57/109 (52%), Positives = 72/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    23 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEF 82

Query:    76 EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N P
Sbjct:    83 KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131

GO:0000502 "proteasome complex" evidence=ISO;ISS

GO:0001541 "ovarian follicle development" evidence=ISO

GO:0002020 "protease binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0007286 "spermatid development" evidence=ISO

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISO

GO:0033081 "regulation of T cell differentiation in thymus" evidence=ISO

GO:0042699 "follicle-stimulating hormone signaling pathway" evidence=ISO

GO:0043248 "proteasome assembly" evidence=ISO;ISS

GO:0048477 "oogenesis" evidence=ISO

GO:0048538 "thymus development" evidence=ISO

GO:0060009 "Sertoli cell development" evidence=ISO

GO:0060399 "positive regulation of growth hormone receptor signaling pathway" evidence=ISO

GO:0060612 "adipose tissue development" evidence=ISO

GO:0061133 "endopeptidase activator activity" evidence=ISO;ISS

GO:0070628 "proteasome binding" evidence=IEA;ISO

GO:0072520 "seminiferous tubule development" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017007001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (320 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014791001	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (309 aa)				•	•		•		0.504
	GSVIVG00005967001	SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (321 aa)					•		•		0.471

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	234
cd13314	105	cd13314, PH_Rpn13, Regulatory Particle Non-ATPase	5e-56
pfam04683	84	pfam04683, Proteasom_Rpn13, Proteasome complex sub	6e-40
pfam13658	96	pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolas	0.002

>gnl|CDD|241468 cd13314, PH_Rpn13, Regulatory Particle Non-ATPase 13 Pleckstrin homology-like domain

 Score =  173 bits (441), Expect = 5e-56
 Identities = 56/105 (53%), Positives = 73/105 (69%), Gaps = 1/105 (0%)

Query: 17  LEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFE 76
           +EF+AGKMT  G  V PD RKGLV + +G+ GLIHF W DRT   VEDD I+FP +A F+
Sbjct: 1   VEFKAGKMTLKGTTVTPDPRKGLVYLYQGDDGLIHFCWKDRTTGAVEDDLIIFPDDAEFK 60

Query: 77  KVNQ-ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           KV Q  +GRVY+LKF +  +K F WMQEP  ++D ++C  VN  +
Sbjct: 61  KVPQCTTGRVYVLKFKSSSQKHFFWMQEPSTDKDEEICKKVNELL 105

Targeted protein degradation is performed to a great extent by the ubiquitin-proteasome pathway, in which substrate proteins are marked by covalently attached ubiquitin chains that mediate recognition by the proteasome. Rpn13(also called ADRM1/ARM1) is one of the two major ubiquitin receptors of the proteasome, the other being S5a/Rpn10 which is not essential for ubiquitin-mediated protein degradation in budding yeast2. S5a has two ubiquitin interacting motifs (UIMs) that bind simultaneously to ubiquitin moieties to increase affinity while Rpn13 binds ubiquitin with a single, high affinity surface within its N-terminal PH domain. Rpn13 also binds and activates deubiquitinating enzyme Uch37, one of the proteasome's three deubiquitinating enzymes. Recently it was discovered that the ubiquitin-binding domain (BD) and Uch37 BD of human (h) Rpn13 pack against each other when it is not incorporated into the proteasome reducing hRpn13's affinity for ubiquitin. However when hRpn13 binds to hRpn2/S1 this abrogates its interdomain interactions, thus activating hRpn13 for ubiquitin binding. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|218211 pfam04683, Proteasom_Rpn13, Proteasome complex subunit Rpn13 ubiquitin receptor

 Score =  132 bits (333), Expect = 6e-40
 Identities = 45/84 (53%), Positives = 59/84 (70%), Gaps = 1/84 (1%)

Query: 22  GKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQA 81
           GKM  DGK V PD RKGL+ + + + GL+HFQW  R    VEDD I+FP EA F++V Q 
Sbjct: 1   GKMNLDGKTVTPDPRKGLLYLYKSDDGLLHFQWKPRDTGEVEDDLILFPGEATFKRVPQC 60

Query: 82  -SGRVYILKFNTDDRKFFLWMQEP 104
            +GRVY+LKF +  +++F WMQEP
Sbjct: 61  TTGRVYVLKFKSSGQRYFFWMQEP 84

This family was thought originally to be involved in cell-adhesion, but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37. Length = 84

>gnl|CDD|222294 pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolase 37 receptor binding site

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)

Query: 201 LGLGDILKPDLIMPLIETLP-LEQRLAPYLPE 231
           + L D+L P+ + PL+E+ P +++RL P+LPE
Sbjct: 1   VDLSDVLTPENLEPLLESPPQVQERLLPHLPE 32

This domain appears frequently at the C-terminus of Proteasom_Rpn13, pfam04683. It is a proteasome subunit that binds the de-ubiquitinating enzyme, UCH37. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
KOG3037	330	consensus Cell membrane glycoprotein [General func	100.0
PF04683	85	Proteasom_Rpn13: Proteasome complex subunit Rpn13	100.0

>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]

Probab=100.00  E-value=1.9e-60  Score=429.69  Aligned_cols=225  Identities=40%  Similarity=0.664  Sum_probs=169.3

Q ss_pred             CCcCCCCCceeEEEeceeeEecC--CceeecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceEeeCCceEEEEecc-CC
Q 026728            6 TAASPAMQEILLEFRAGKMTFDG--KKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-AS   82 (234)
Q Consensus         6 ~~~~~~~~~~li~FkAGk~~~~g--~~V~pd~rKG~l~l~~~~d~l~hf~W~~R~~~~~Edd~ii~Pgd~~f~~V~~-~t   82 (234)
                      .+.++.++.+|||||||||.+.|  ++|+||+|||+|||.+++||||||||++|+++.||||+||||+|++|+||++ ||
T Consensus         2 ~~ss~s~~~~lVeFkAGkm~l~~gtk~v~pDprKGli~i~~sddgliHF~WkdR~~g~VEdDlIifPde~eF~kV~qC~t   81 (330)
T KOG3037|consen    2 TESSNSSSSTLVEFKAGKMRLVGGTKLVTPDPRKGLIYIKRSDDGLIHFCWKDRESGNVEDDLIVFPDEAEFKKVDQCKT   81 (330)
T ss_pred             ccccccccceEEEEecceEEecCCcceeecccccceEEEeeCCCceEEEEecccCCCCcccceEEccCceeEEECCCCCC
Confidence            34567899999999999999998  9999999999999999999999999999999999999999999999999999 99


Q ss_pred             CeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCCccccc-----ccccccCCC----ccccc-----------
Q 026728           83 GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVN-----EEELDASVP----LQVSE-----------  142 (234)
Q Consensus        83 GRVyvLkF~ss~~r~fFWmQe~~~~~D~~~~~kin~~l~~~~~~~~-----~~~~~~~~~----~~~~~-----------  142 (234)
                      ||||+|||+|++|||||||||+++++|+++|+|||++||+|+....     ........+    +++..           
T Consensus        82 GRVY~LKFkSs~~r~FFWMQE~~~d~D~e~c~rvNelln~p~~~~~~~~~~~~~~l~~~~~s~~~~lfgg~~~~~~L~~~  161 (330)
T KOG3037|consen   82 GRVYVLKFKSSDQRLFFWMQEPSDDNDKELCSRVNELLNKPPTSRPLGASGSGSMLNDDSKSQLMQLFGGSGMNDGLEAL  161 (330)
T ss_pred             CcEEEEEecCCCeeEEEEeecCCCCcCHHHHHHHHHHHcCCCccccccccccccccccccHHHHHhhcCcccccchhhhh
Confidence            9999999999999999999999999999999999999999973321     000000000    00000           


Q ss_pred             ------ccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHhhcCCCCCCCCCCCCCCccccCCcCcchhhh
Q 026728          143 ------DMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLI  216 (234)
Q Consensus       143 ------~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lq~iLs~lg~~~~~~~~~~~~~L~dvLtpe~l~pll  216 (234)
                            .......++.++++..+++.+ ......++..+...+++++.++.+.++.+.+  ...++|++||+||++.++|
T Consensus       162 ~~e~l~~~~~s~~~s~~~~~~~~t~es-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g--~~~vdLa~vL~~e~v~~vl  238 (330)
T KOG3037|consen  162 TVEQLNSLAESNESSLPGNSVPQTPES-SVSGPESPSEPNKEEDVSNSLSTLSPQIGFG--ASTVDLATVLKPEAVAPVL  238 (330)
T ss_pred             hHhhhcccccCccccccccccccCccc-cccCCCCCCccccchhhcccccCCchhccCC--ccceehhhhcChHHHHHHh
Confidence                  000000001111111111100 0111122244566788999999886533221  2369999999999999999


Q ss_pred             cCcchHHhhccCCCCCC
Q 026728          217 ETLPLEQRLAPYLPERS  233 (234)
Q Consensus       217 ~~~~~~~~L~~~LP~~~  233 (234)
                      +++.++++|++|||++|
T Consensus       239 ~~~~v~erL~phlP~d~  255 (330)
T KOG3037|consen  239 ANPGVQERLMPHLPSDH  255 (330)
T ss_pred             hCcchhhhhcccCCCCC
Confidence            99999999999999986

>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor

Probab=100.00  E-value=2e-40  Score=251.84  Aligned_cols=83  Identities=55%  Similarity=1.058  Sum_probs=71.7

Q ss_pred             eeeEecCCceeecCCCcEEEEEeCCCCceEEEEeeCCC-CCcccceEeeCCceEEEEecc-CCCeEEEEEEcCCCceeEE
Q 026728           22 GKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTR-NVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFL   99 (234)
Q Consensus        22 Gk~~~~g~~V~pd~rKG~l~l~~~~d~l~hf~W~~R~~-~~~Edd~ii~Pgd~~f~~V~~-~tGRVyvLkF~ss~~r~fF   99 (234)
                      |||+++|++|+||+|||+|+|++++|+|+||||++|++ +.+|+|+||||||++|++|++ +|||||+|||++|++||||
T Consensus         1 Gk~~~~~~~V~pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~~e~d~il~pg~~~f~~V~~c~tGRVy~LkF~ss~~~~fF   80 (85)
T PF04683_consen    1 GKMDLDGKIVTPDPRKGLLYLYKSEDGLLHFCWKPRDTTGEVEDDLILFPGDATFKKVPQCKTGRVYVLKFKSSDQRYFF   80 (85)
T ss_dssp             EEEEEETTEEEE-SS-EEEEEEETTTS-EEEEEEETST---EEEEEEE-TTTEEEEE-TTSSTS-EEEEEETTTT-EEEE
T ss_pred             CcEEEeCCEEeECCCCEEEEEEECCCCeEEEEEEEcCcCCCcccceecCCCCeEEEECCcCCCCeEEEEEECCCCccEEE
Confidence            89999999999999999999999999999999999999 999999999999999999999 9999999999999999999


Q ss_pred             EccCC
Q 026728          100 WMQEP  104 (234)
Q Consensus       100 WmQe~  104 (234)
                      |||||
T Consensus        81 WmQe~   85 (85)
T PF04683_consen   81 WMQEP   85 (85)
T ss_dssp             EE-SS
T ss_pred             EecCC
Confidence            99996

The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	234
2kr0_A	411	A Proteasome Protein Length = 411		6e-31
2r2y_A	153	Crystal Structure Of The Proteasomal Rpn13 Pru-Doma		1e-29
2z59_A	109	Complex Structures Of Mouse Rpn13 (22-130aa) And Ub		3e-28

>pdb|2KR0|A Chain A, A Proteasome Protein Length = 411

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 11  AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFP 70
           A  + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP
Sbjct: 22  ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFP 81
Query: 71  HEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 82  DDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 135

>pdb|2Z59|A Chain A, Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin Length = 109

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 16  LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
           L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct: 2   LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEF 61
Query: 76  EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121
           ++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N
Sbjct: 62  KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLN 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
2r2y_A	153	Protein ADRM1; proteasome, ubiquitin, PH-domain, 1	3e-49
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	3e-43
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	2e-06
2z4d_A	96	26S proteasome regulatory subunit RPN13; PH domain	6e-33
2kqz_A	155	Proteasomal ubiquitin receptor ADRM1; proteasome,	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens} Length = 411

 Score =  149 bits (377), Expect = 3e-43
 Identities = 72/203 (35%), Positives = 100/203 (49%), Gaps = 5/203 (2%)

Query: 2   GSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNV 61
            S    +  A  + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   
Sbjct: 13  PSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGN 72

Query: 62  VEDDQIVFPHEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           VEDD I+FP +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++
Sbjct: 73  VEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYL 132

Query: 121 NRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNL---VVPNLGGEAISDVTSSSGPVK 177
           N P +         S   ++S    E  + S  GN+    +  L G A        G + 
Sbjct: 133 NNPPMPGALGA-SGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALT 191

Query: 178 LEDLQRIFSNIGPADITEDPDGG 200
              L  +  + GP   +      
Sbjct: 192 GPGLASLLGSSGPPGSSSSSSSR 214

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens} Length = 411

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 150 SSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKP 209
           ++ A +       G   S   S + P++L DLQ I + +            + L  +L P
Sbjct: 240 AASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGP-AGGQQVDLASVLTP 298

Query: 210 DLIMPLIETLPLEQRLAPYLPE 231
           +++ P++    +++RL PYLP 
Sbjct: 299 EIMAPILANADVQERLLPYLPS 320

>2z4d_A 26S proteasome regulatory subunit RPN13; PH domain, nuclear protein; NMR {Saccharomyces cerevisiae} Length = 96

 Score =  114 bits (286), Expect = 6e-33
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 16  LLEFRAGKMTFD--GKKVVPDSRKGLVRIARGE---HGLIHFQWLDRT----RNVVEDDQ 66
           +++FRAG   ++   +   P   +G + I   E    G   F+W        R +     
Sbjct: 2   VIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGRELDPISL 61

Query: 67  IVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWM 101
           I+ P E ++  +    SGR++ L F++++R FF W+
Sbjct: 62  ILIPGETMWVPIKSSKSGRIFALVFSSNERYFF-WL 96

>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A Length = 155

 Score = 63.6 bits (154), Expect = 5e-13
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 167 SDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLA 226
           S   S + P++L DLQ I + +            + L  +L P+++ P++    +++RL 
Sbjct: 1   STAASPTQPIQLSDLQSILATMNVPA-GPAGGQQVDLASVLTPEIMAPILANADVQERLL 59

Query: 227 PYLPE 231
           PYLP 
Sbjct: 60  PYLPS 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 30/254 (11%), Positives = 70/254 (27%), Gaps = 80/254 (31%)

Query: 17  LEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVV---EDDQIV-FPHE 72
           ++F  G+  +  K ++       V               D  ++++   E D I+     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVD------NFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 73  A-----VFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQ--------------LC 113
                 +F  +      +         R  + ++  P   E  Q              L 
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 114 NSVN----YFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGG------ 163
           N       Y ++R       +       L++ + ++E      A N+++  + G      
Sbjct: 121 NDNQVFAKYNVSRL------QPY-----LKLRQALLELR---PAKNVLIDGVLGSGKTWV 166

Query: 164 --EAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGG--LGLGDILKPDLIMPLIETL 219
             +                +Q                    L L +   P+ ++ +++ L
Sbjct: 167 ALDVCLS----------YKVQCKM-----------DFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 220 PLEQRLAPYLPERS 233
               ++ P    RS
Sbjct: 206 LY--QIDPNWTSRS 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	100.0
2r2y_A	153	Protein ADRM1; proteasome, ubiquitin, PH-domain, 1	100.0
4b4t_X	156	26S proteasome regulatory subunit RPN13; hydrolase	100.0
2kqz_A	155	Proteasomal ubiquitin receptor ADRM1; proteasome,	99.17

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}

Probab=100.00  E-value=1.2e-60  Score=447.72  Aligned_cols=222  Identities=35%  Similarity=0.648  Sum_probs=167.3

Q ss_pred             CCCceeEEEeceeeEecCCceeecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceEeeCCceEEEEecc-CCCeEEEEE
Q 026728           11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILK   89 (234)
Q Consensus        11 ~~~~~li~FkAGk~~~~g~~V~pd~rKG~l~l~~~~d~l~hf~W~~R~~~~~Edd~ii~Pgd~~f~~V~~-~tGRVyvLk   89 (234)
                      .+.++||+||||||+++|++|+||+|||+|||++.+|+|+||||++|+++.+|||+||||+|++|+||++ |||||||||
T Consensus        22 s~~~~lveFkAGk~~~~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~~Eddlii~P~d~~f~~V~~c~tGRVyvLk  101 (411)
T 2kr0_A           22 ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLK  101 (411)
T ss_dssp             SCCSCSEEECEEEEEESSSSEEECCSCEEEEEEECTTSCEEEEEEESSSCCEEEEEEECTTSEEEEECTTCSSSCEEEEE
T ss_pred             CCCceeEEEeCceEEecCCEEeecCCCcEEEEEeCCCCcEEEEEecCCCCCcccceEEcCCceEEEECCCCCCCeEEEEE
Confidence            4569999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             EcCCCceeEEEccCCCchhhHHHHHHHHHHhcCCcccc---cccc---c------ccCCC--------cccccccc----
Q 026728           90 FNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFV---NEEE---L------DASVP--------LQVSEDMV----  145 (234)
Q Consensus        90 F~ss~~r~fFWmQe~~~~~D~~~~~kin~~l~~~~~~~---~~~~---~------~~~~~--------~~~~~~~~----  145 (234)
                      |+++++||||||||++.++|+++|++||++|+++++..   +.+.   +      ..++.        .+++....    
T Consensus       102 F~ss~~r~fFWmQe~~~~~D~~~~~~vN~ll~~~~~~~~~~~~gs~~~~~~~~g~e~dl~~~~~~~sq~qlmql~g~~g~  181 (411)
T 2kr0_A          102 FKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGL  181 (411)
T ss_dssp             ETTTCCEEEEEECCSCGGGHHHHHHHHHHHHHSCSCCSCSCCCSSCCCCSSCCCSCCCSCSCSSCCCSCCSSCCCCSSCC
T ss_pred             ecCCCceeEEEecCCCcccHHHHHHHHHHHHhCCcccccccccCccccccccccccchhhhccccccHHHHHHhhhcccc
Confidence            99999999999999999999999999999999987421   0000   0      00000        01111100    


Q ss_pred             -------------------cCCcccCC-------CCC--------CCCCC-C------------------CC-CCCCCCC
Q 026728          146 -------------------EDDVSSRA-------GNL--------VVPNL-G------------------GE-AISDVTS  171 (234)
Q Consensus       146 -------------------~~~~ss~~-------~~~--------~~~~~-~------------------~~-~~~~~~~  171 (234)
                                         .....+++       ..+        ..+.+ .                  .. +.+..++
T Consensus       182 ~~~~gl~~~~gp~~~~~~~s~~~~~~~~s~~~~~~~~~~tp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (411)
T 2kr0_A          182 GGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAAS  261 (411)
T ss_dssp             CSTTCSCCCCCCSTTTTTCSCCCCSSSCCCCSCCCCCCCCTTSCCCCCCSCCCCCCCSSCCCSSCCCCSCCSSSSSTTTS
T ss_pred             ccccccccccCcccccccccCCCccccccccccccccccccccccccccccccccccccccccccccccccccCCccccc
Confidence                               00000000       000        00000 0                  00 0001122


Q ss_pred             CCCCccHHHHHHHHhhcCCCCCCCCCCCCCCccccCCcCcchhhhcCcchHHhhccCCCCCC
Q 026728          172 SSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERS  233 (234)
Q Consensus       172 ~~~~~~l~~lq~iLs~lg~~~~~~~~~~~~~L~dvLtpe~l~pll~~~~~~~~L~~~LP~~~  233 (234)
                      +.+++++++||+||++|+.....+ ..++++|+|||+|++|.|||+|++++++|++|||+++
T Consensus       262 ~~~~i~l~dLq~iLasl~~~~~~~-~~~~v~L~dvLt~e~l~pll~d~e~~erL~~~LP~~~  322 (411)
T 2kr0_A          262 PTQPIQLSDLQSILATMNVPAGPA-GGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGE  322 (411)
T ss_dssp             CCCCSSHHHHHHHHHHHTSSSCTT-CSHHHHGGGTSCHHHHHHHHTSHHHHHHHGGGCCSSC
T ss_pred             cCCcccHHHHHHHHHhhccccccc-cCCCCCHHHhhCHHHHHHHhcCHHHHHHHHhhCCCCc
Confidence            345789999999999997432221 3568999999999999999999999999999999975

>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A

Probab=100.00  E-value=1.7e-46  Score=312.23  Aligned_cols=112  Identities=25%  Similarity=0.567  Sum_probs=99.4

Q ss_pred             CCceeEEEeceeeEecC--CceeecCCCcEEEEEeCCC---CceEEEEeeCCCCCc----ccceEeeCCceEEEEecc-C
Q 026728           12 MQEILLEFRAGKMTFDG--KKVVPDSRKGLVRIARGEH---GLIHFQWLDRTRNVV----EDDQIVFPHEAVFEKVNQ-A   81 (234)
Q Consensus        12 ~~~~li~FkAGk~~~~g--~~V~pd~rKG~l~l~~~~d---~l~hf~W~~R~~~~~----Edd~ii~Pgd~~f~~V~~-~   81 (234)
                      +..+||+||||||.+++  ++|+|++|||+|||++++|   +|+||||++|+++..    |+|+||||||++|++|++ +
T Consensus         3 ~s~~li~FkAGk~~~~~~tk~v~Pd~rKG~i~l~~~~d~~~~l~hf~W~~R~~~~~~~~~~~dlii~P~d~~f~~v~~c~   82 (156)
T 4b4t_X            3 MSSTVIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGRELDPISLILIPGETMWVPIKSSK   82 (156)
T ss_dssp             ----CEEECEEEEEEETTTTEEEECSCCCBEEEESCSSSSSCCCEEECBSCSCCSSCCCCCCEECCCTTTSEEECCSSCS
T ss_pred             CCceeEEEeCceEEEcCCccEEeecCCceEEEEEECCCCCcceEEEEEecCCCCCcCCCCccceEEcCCceEEEEcCCCC
Confidence            45789999999999986  6899999999999999877   699999999997653    459999999999999999 9


Q ss_pred             CCeEEEEEEcCCCceeEEEccCCCc---------hhhHHHHHHHHHHhcCCc
Q 026728           82 SGRVYILKFNTDDRKFFLWMQEPKA---------EEDSQLCNSVNYFINRPL  124 (234)
Q Consensus        82 tGRVyvLkF~ss~~r~fFWmQe~~~---------~~D~~~~~kin~~l~~~~  124 (234)
                      |||||+||| +|+|||||||||+++         ++|.++|++||++||++.
T Consensus        83 tGRVyvLkF-ss~~r~fFWmQe~~~~~~~~~~~s~kD~~~~~~vn~lL~~~~  133 (156)
T 4b4t_X           83 SGRIFALVF-SSNERYFFWLQEKNSGNLPLNELSAKDKEIYNKMIGVLNNSS  133 (156)
T ss_dssp             SCCEEEEEC-SSSCCEEEEECSSCSSSSSSCCCSSSSHHHHHHHHHHHHCC-
T ss_pred             CcEEEEEEe-cCCCcEEEEeecCCccCCcccccchhHHHHHHHHHHHhcCCc
Confidence            999999999 678999999999986         679999999999999986

>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A

Probab=99.17  E-value=5.6e-12  Score=104.49  Aligned_cols=61  Identities=26%  Similarity=0.597  Sum_probs=52.4

Q ss_pred             CCCCccHHHHHHHHhhcCCCCCCCCCCCCCCccccCCcCcchhhhcCcchHHhhccCCCCCC
Q 026728          172 SSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPERS  233 (234)
Q Consensus       172 ~~~~~~l~~lq~iLs~lg~~~~~~~~~~~~~L~dvLtpe~l~pll~~~~~~~~L~~~LP~~~  233 (234)
                      +++++++++||+||++|+..+..+ .+++++|+|||+|++|.|||+|++++++|++||||++
T Consensus         6 ~~~~i~l~~lq~il~sl~~~~~~~-~~~~~~L~dvLt~e~l~~ll~d~~~~~~L~~~LP~~~   66 (155)
T 2kqz_A            6 PTQPIQLSDLQSILATMNVPAGPA-GGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGE   66 (155)
T ss_dssp             SCCCCSTTHHHHHHHHTCCCCCCC-SSSHHHHHHHTCTTTSHHHHHSHHHHHHHHHHSCSSC
T ss_pred             CCCCccHHHHHHHHHHhccccccC-CCCCCCHHHHhCHHHHHHHHcCHHHHHHHHhhCCCCC
Confidence            356799999999999997433222 4678999999999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00