Citrus Sinensis ID: 026729

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVMLYE
ccccccHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccEEEcHHHHHcccccHHHHHHHHHHHHccccEEEcccccccHHHHHHccccccEEEEcccccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHcccccEEEEccc
cccEEcHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHccccHEEEccccccccEEEccccccccEEEccHHHcccccccHHHHHHHHHHHccccEEEEEEccccHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHccccccccccHHHHHHccccccccccccHHHHHHHHHccccccHHHHHHHHHHccccccEEEEc
MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFsrilfrprilidvskidmnttvlgfkismpimiaptamqkmahpegeyATARAASAAGTIMtlsswstssveevastgpgirfFQLYVYKDRNVVAQLVRRAERAGFKAIALtvdtprlgrreadiknrftlppfltlknfqgldlgkmdeandSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVMLYE
MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFrprilidvskidMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRaeragfkaialtvdtprlgrreadiknrftlppfltlkNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVMLYE
MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYataraasaaGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVMLYE
******VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM*****************AAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVMLY*
*GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ*****************YVAGQIDRSLSWKNILCLYQDFSFECDVMLYE
MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS***********STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVMLYE
*GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVMLYE
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVMLYE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query234 2.2.26 [Sep-21-2011]
P05414 369 Peroxisomal (S)-2-hydroxy N/A no 0.931 0.590 0.912 1e-111
Q9LRR9 367 Peroxisomal (S)-2-hydroxy yes no 0.931 0.594 0.908 1e-111
O49506 368 Peroxisomal (S)-2-hydroxy no no 0.931 0.592 0.876 1e-110
Q10CE4 369 Peroxisomal (S)-2-hydroxy yes no 0.940 0.596 0.881 1e-110
B8AKX6 369 Peroxisomal (S)-2-hydroxy N/A no 0.940 0.596 0.881 1e-110
Q6YT73 369 Peroxisomal (S)-2-hydroxy no no 0.940 0.596 0.886 1e-110
B8B7C5 369 Peroxisomal (S)-2-hydroxy N/A no 0.940 0.596 0.886 1e-110
Q9LRS0 367 Peroxisomal (S)-2-hydroxy no no 0.931 0.594 0.894 1e-108
Q7FAS1 367 Peroxisomal (S)-2-hydroxy no no 0.927 0.591 0.834 1e-100
B8AUI3 367 Peroxisomal (S)-2-hydroxy N/A no 0.927 0.591 0.834 1e-100
>sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1 Back     alignment and function desciption
 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/218 (91%), Positives = 211/218 (96%)

Query: 3   EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
           EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM 
Sbjct: 2   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61

Query: 63  TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
           TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121

Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
           GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181

Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCL 220
           NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWK++  L
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWL 219

Spinacia oleracea (taxid: 3562)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5
>sp|Q9LRR9|GLO1_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1 Back     alignment and function description
>sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1 Back     alignment and function description
>sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1 Back     alignment and function description
>sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1 Back     alignment and function description
>sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1 Back     alignment and function description
>sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1 Back     alignment and function description
>sp|Q9LRS0|GLO2_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 OS=Arabidopsis thaliana GN=GLO2 PE=1 SV=1 Back     alignment and function description
>sp|Q7FAS1|GLO3_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. japonica GN=GLO3 PE=2 SV=1 Back     alignment and function description
>sp|B8AUI3|GLO3_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. indica GN=GLO3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
189418957 369 glycolate oxidase [Mikania micrantha] 0.927 0.588 0.912 1e-115
147789493 371 hypothetical protein VITISV_005886 [Viti 0.931 0.587 0.912 1e-114
297790174 369 hypothetical protein ARALYDRAFT_333142 [ 0.931 0.590 0.940 1e-113
323650489 370 glycolate oxidase [Mangifera indica] 0.940 0.594 0.936 1e-112
304368145 371 glycolate oxidase [Nicotiana benthamiana 0.940 0.592 0.927 1e-112
228403 371 glycolate oxidase 0.931 0.587 0.931 1e-111
374433978 367 glycolate oxidase [Wolffia australiana] 0.918 0.585 0.893 1e-111
224117076 369 predicted protein [Populus trichocarpa] 0.918 0.582 0.939 1e-111
359806771 371 peroxisomal (S)-2-hydroxy-acid oxidase G 0.931 0.587 0.931 1e-111
224121620 369 predicted protein [Populus trichocarpa] 0.918 0.582 0.939 1e-111
>gi|189418957|gb|ACD93720.1| glycolate oxidase [Mikania micrantha] Back     alignment and taxonomy information
 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/217 (91%), Positives = 211/217 (97%)

Query: 4   ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
           +TNV EYEAIAKEKLPKMV+DYYASGAEDQWTL+E+RNAFSRILFRPRILIDVSKI M T
Sbjct: 3   VTNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLEESRNAFSRILFRPRILIDVSKIVMTT 62

Query: 64  TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
           T+LGFKISMPIM+APTAMQKMAHPEGEYATARAAS+AGTIMTLSSW+TSSVEE ASTGPG
Sbjct: 63  TILGFKISMPIMVAPTAMQKMAHPEGEYATARAASSAGTIMTLSSWATSSVEEAASTGPG 122

Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
           IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN
Sbjct: 123 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 182

Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCL 220
           F+GLDLGKMDEANDSGLA+YVAGQIDR+LSWK++  L
Sbjct: 183 FEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 219

Source: Mikania micrantha

Species: Mikania micrantha

Genus: Mikania

Family: Asteraceae

Order: Asterales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147789493|emb|CAN67413.1| hypothetical protein VITISV_005886 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297790174|ref|XP_002862992.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297839705|ref|XP_002887734.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] gi|297308786|gb|EFH39251.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297333575|gb|EFH63993.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|323650489|gb|ADX97325.1| glycolate oxidase [Mangifera indica] Back     alignment and taxonomy information
>gi|304368145|gb|ADM26718.1| glycolate oxidase [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|228403|prf||1803516A glycolate oxidase Back     alignment and taxonomy information
>gi|374433978|gb|AEZ52381.1| glycolate oxidase [Wolffia australiana] Back     alignment and taxonomy information
>gi|224117076|ref|XP_002317470.1| predicted protein [Populus trichocarpa] gi|118489504|gb|ABK96554.1| unknown [Populus trichocarpa x Populus deltoides] gi|222860535|gb|EEE98082.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359806771|ref|NP_001241302.1| peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [Glycine max] gi|167961875|dbj|BAG09382.1| peroxisomal glycolate oxidase [Glycine max] Back     alignment and taxonomy information
>gi|224121620|ref|XP_002330746.1| predicted protein [Populus trichocarpa] gi|118486606|gb|ABK95141.1| unknown [Populus trichocarpa] gi|222872522|gb|EEF09653.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
TAIR|locus:2091642 367 GOX1 "glycolate oxidase 1" [Ar 0.918 0.585 0.874 1e-98
UNIPROTKB|B8AKX6 369 GLO1 "Peroxisomal (S)-2-hydrox 0.927 0.588 0.847 9.4e-98
UNIPROTKB|Q10CE4 369 GLO1 "Peroxisomal (S)-2-hydrox 0.927 0.588 0.847 9.4e-98
UNIPROTKB|B8B7C5 369 GLO5 "Peroxisomal (S)-2-hydrox 0.927 0.588 0.852 1.2e-97
UNIPROTKB|Q6YT73 369 GLO5 "Peroxisomal (S)-2-hydrox 0.927 0.588 0.852 1.2e-97
TAIR|locus:2124499 368 GOX3 "glycolate oxidase 3" [Ar 0.918 0.584 0.846 1.8e-94
UNIPROTKB|B8AUI3 367 GLO3 "Peroxisomal (S)-2-hydrox 0.914 0.583 0.799 4.6e-89
UNIPROTKB|Q7FAS1 367 GLO3 "Peroxisomal (S)-2-hydrox 0.914 0.583 0.799 4.6e-89
UNIPROTKB|Q01KC2 368 GLO2 "Peroxisomal (S)-2-hydrox 0.927 0.589 0.677 2.4e-76
UNIPROTKB|Q7XPR4 368 GLO2 "Peroxisomal (S)-2-hydrox 0.927 0.589 0.677 2.4e-76
TAIR|locus:2091642 GOX1 "glycolate oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 188/215 (87%), Positives = 202/215 (93%)

Query:     3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
             EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM 
Sbjct:     2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61

Query:    63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
             TTVLGFKISMPIM+APTAMQKMAHP+GEY         GTIMTLSSW+TSSVEEVASTGP
Sbjct:    62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121

Query:   123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
             GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct:   122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181

Query:   183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
             NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWK++
Sbjct:   182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDV 216
GO:0003824 "catalytic activity" evidence=IEA
GO:0008891 "glycolate oxidase activity" evidence=ISS;IMP
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005777 "peroxisome" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=IMP
UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|B8B7C5 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q6YT73 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2124499 GOX3 "glycolate oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B8AUI3 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q7FAS1 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q01KC2 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XPR4 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LRR9GLO1_ARATH1, ., 1, ., 3, ., 1, 50.90820.93160.5940yesno
Q10CE4GLO1_ORYSJ1, ., 1, ., 3, ., 1, 50.88180.94010.5962yesno
P05414GOX_SPIOL1, ., 1, ., 3, ., 1, 50.91280.93160.5907N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.30.963
3rd Layer1.1.3.150.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_202808.1
annotation not avaliable (369 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.3__3006__AT2G13360.2
annotation not avaliable (401 aa)
   •••• 0.448
Al_scaffold_0006_297
Malate synthase Fragment (EC 2.3.3.9) (562 aa)
     •• 0.431
fgenesh2_kg.6__602__AT5G06580.1
annotation not avaliable (566 aa)
•    •• 0.421
fgenesh2_kg.3__2397__AT3G21720.1
annotation not avaliable (576 aa)
     •• 0.415

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
PLN02493 367 PLN02493, PLN02493, probable peroxisomal (S)-2-hyd 1e-141
PLN02979 366 PLN02979, PLN02979, glycolate oxidase 1e-114
PLN02535 364 PLN02535, PLN02535, glycolate oxidase 1e-104
cd02809299 cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom 2e-87
pfam01070302 pfam01070, FMN_dh, FMN-dependent dehydrogenase 5e-87
cd02922 344 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b 6e-74
COG1304 360 COG1304, idi, Isopentenyl diphosphate isomerase (B 5e-61
cd04737 351 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN 6e-59
cd03332 383 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) 3e-54
cd04736 361 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li 4e-54
TIGR02708 367 TIGR02708, L_lactate_ox, L-lactate oxidase 3e-42
TIGR03966 385 TIGR03966, actino_HemFlav, heme/flavin dehydrogena 1e-38
PRK11197 381 PRK11197, lldD, L-lactate dehydrogenase; Provision 7e-35
TIGR02151 333 TIGR02151, IPP_isom_2, isopentenyl-diphosphate del 3e-05
PRK05437 352 PRK05437, PRK05437, isopentenyl pyrophosphate isom 3e-04
cd02811 326 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimeth 0.001
>gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase Back     alignment and domain information 
 Score =  399 bits (1025), Expect = e-141
 Identities = 197/215 (91%), Positives = 211/215 (98%)

Query: 3   EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
           EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM 
Sbjct: 2   EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61

Query: 63  TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
           TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62  TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121

Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
           GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181

Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
           NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWK++
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDV 216

Length = 367
>gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase Back     alignment and domain information
>gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase Back     alignment and domain information
>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase Back     alignment and domain information
>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain Back     alignment and domain information
>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] Back     alignment and domain information
>gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain Back     alignment and domain information
>gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain Back     alignment and domain information
>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain Back     alignment and domain information
>gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase Back     alignment and domain information
>gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system Back     alignment and domain information
>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2 Back     alignment and domain information
>gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 234
KOG0538 363 consensus Glycolate oxidase [Energy production and 100.0
PLN02493 367 probable peroxisomal (S)-2-hydroxy-acid oxidase 100.0
PRK11197 381 lldD L-lactate dehydrogenase; Provisional 100.0
PLN02535 364 glycolate oxidase 100.0
cd04736 361 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin 100.0
cd03332 383 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin 100.0
TIGR02708 367 L_lactate_ox L-lactate oxidase. Members of this pr 100.0
cd04737 351 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d 100.0
cd02922 344 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom 100.0
PF01070 356 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR 100.0
PLN02979 366 glycolate oxidase 100.0
COG1304 360 idi Isopentenyl diphosphate isomerase (BS_ypgA, MT 100.0
cd02809 299 alpha_hydroxyacid_oxid_FMN Family of homologous FM 100.0
cd02811 326 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di 99.39
PRK05437 352 isopentenyl pyrophosphate isomerase; Provisional 99.34
TIGR02151 333 IPP_isom_2 isopentenyl-diphosphate delta-isomerase 99.19
TIGR01306 321 GMP_reduct_2 guanosine monophosphate reductase, ba 98.52
PRK05458 326 guanosine 5'-monophosphate oxidoreductase; Provisi 98.14
PRK08649 368 inosine 5-monophosphate dehydrogenase; Validated 97.28
cd00381 325 IMPDH IMPDH: The catalytic domain of the inosine m 96.98
TIGR01304 369 IMP_DH_rel_2 IMP dehydrogenase family protein. Thi 96.3
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 95.74
TIGR01305 343 GMP_reduct_1 guanosine monophosphate reductase, eu 95.69
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 95.34
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 95.01
PLN02495 385 oxidoreductase, acting on the CH-CH group of donor 94.22
PRK06843 404 inosine 5-monophosphate dehydrogenase; Validated 92.88
TIGR00737 319 nifR3_yhdG putative TIM-barrel protein, nifR3 fami 91.93
PRK07565 334 dihydroorotate dehydrogenase 2; Reviewed 91.82
cd02808 392 GltS_FMN Glutamate synthase (GltS) FMN-binding dom 90.81
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 90.22
cd04739 325 DHOD_like Dihydroorotate dehydrogenase (DHOD) like 90.1
PF00478 352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 90.09
cd04738327 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl 90.08
cd04722200 TIM_phosphate_binding TIM barrel proteins share a 89.92
PRK08318 420 dihydropyrimidine dehydrogenase subunit B; Validat 88.2
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 88.2
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 88.1
PRK05096 346 guanosine 5'-monophosphate oxidoreductase; Provisi 84.85
PRK10550 312 tRNA-dihydrouridine synthase C; Provisional 84.09
PTZ00314 495 inosine-5'-monophosphate dehydrogenase; Provisiona 82.82
cd04728248 ThiG Thiazole synthase (ThiG) is the tetrameric en 81.16
cd04730236 NPD_like 2-Nitropropane dioxygenase (NPD), one of 81.06
COG2070 336 Dioxygenases related to 2-nitropropane dioxygenase 80.63
PRK10415 321 tRNA-dihydrouridine synthase B; Provisional 80.42
>KOG0538 consensus Glycolate oxidase [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-76  Score=521.91  Aligned_cols=228  Identities=71%  Similarity=1.042  Sum_probs=219.4

Q ss_pred             CCChHHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEeccccccc
Q 026729            4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK   83 (234)
Q Consensus         4 ~~~i~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~   83 (234)
                      ++|++|||+.|+++||+.+||||.|||+|+.|+++|++||+||+||||+|+||+++|+||++||+++++||+|||||+|+
T Consensus         1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk   80 (363)
T KOG0538|consen    1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK   80 (363)
T ss_pred             CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729           84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL  162 (234)
Q Consensus        84 l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~  162 (234)
                      |+|||||.++||||+++|++|++||+|++|+|||++++| +.+|||||+++||+++++|++|||++||+|||||||+|++
T Consensus        81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l  160 (363)
T KOG0538|consen   81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL  160 (363)
T ss_pred             ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence            999999999999999999999999999999999998875 8999999999999999999999999999999999999999


Q ss_pred             CchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCccccc
Q 026729          163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVM  231 (234)
Q Consensus       163 G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~~  231 (234)
                      |+|+.|+||+|.+|.+++++|+......++.+.+.+++..+...++||+++|+||+|||++|+|||+|.
T Consensus       161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvK  229 (363)
T KOG0538|consen  161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVK  229 (363)
T ss_pred             cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEE
Confidence            999999999999999999999988766666666778889999999999999999999999999999873

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase Back     alignment and domain information
>PRK11197 lldD L-lactate dehydrogenase; Provisional Back     alignment and domain information
>PLN02535 glycolate oxidase Back     alignment and domain information
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain Back     alignment and domain information
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain Back     alignment and domain information
>TIGR02708 L_lactate_ox L-lactate oxidase Back     alignment and domain information
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain Back     alignment and domain information
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain Back     alignment and domain information
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related Back     alignment and domain information
>PLN02979 glycolate oxidase Back     alignment and domain information
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] Back     alignment and domain information
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain Back     alignment and domain information
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional Back     alignment and domain information
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 Back     alignment and domain information
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase Back     alignment and domain information
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>PLN02495 oxidoreductase, acting on the CH-CH group of donors Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 Back     alignment and domain information
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PRK10550 tRNA-dihydrouridine synthase C; Provisional Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism Back     alignment and domain information
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites Back     alignment and domain information
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] Back     alignment and domain information
>PRK10415 tRNA-dihydrouridine synthase B; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
1gox_A 370 Refined Structure Of Spinach Glycolate Oxidase At 2 1e-112
1al7_A 359 Three-Dimensional Structures Of Glycolate Oxidase W 1e-112
1gyl_A 369 Involvement Of Tyr24 And Trp108 In Substrate Bindin 1e-111
2rdt_A 387 Crystal Structure Of Human Glycolate Oxidase (Go) I 2e-58
2nzl_A 392 Crystal Structure Of Human Hydroxyacid Oxidase 1 Le 2e-58
2w0u_A 370 Crystal Structure Of Human Glycolate Oxidase In Com 2e-58
2a7n_A 380 Crystal Structure Of The G81a Mutant Of The Active 2e-44
1huv_A 380 Crystal Structure Of A Soluble Mutant Of The Membra 4e-44
2cdh_0226 Architecture Of The Thermomyces Lanuginosus Fungal 7e-44
1qcw_A 410 Flavocytochrome B2, Arg289lys Mutant Length = 410 1e-34
2oz0_A 511 Mechanistic And Structural Studies Of H373q Flavocy 8e-34
1fcb_A 511 Molecular Structure Of Flavocytochrome B2 At 2.4 An 8e-34
1ltd_A 506 The 2.6 Angstroms Refined Structure Of The Escheric 9e-34
1kbj_A 412 Crystallographic Study Of The Recombinant Flavin-Bi 9e-34
1ldc_A 511 X-Ray Structure Of Two Complexes Of The Y143f Flavo 3e-33
1sze_A 511 L230a Mutant Flavocytochrome B2 With Benzoylformate 4e-33
1tb3_A 352 Crystal Structure Analysis Of Recombinant Rat Kidne 4e-33
1szf_A 511 A198g:l230a Mutant Flavocytochrome B2 With Pyruvate 1e-32
3sgz_A 352 High Resolution Crystal Structure Of Rat Long Chain 1e-31
2du2_A 374 Crystal Structure Analysis Of The L-Lactate Oxidase 4e-25
2j6x_A 374 The Crystal Structure Of Lactate Oxidase Length = 3 4e-25
2nli_A 368 Crystal Structure Of The Complex Between L-Lactate 4e-25
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370 Back     alignment and structure 
Iteration: 1

 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/218 (87%), Positives = 202/218 (92%)
Query: 3   EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
           EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM 
Sbjct: 3   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 63  TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
           TT+LGFKISMPIMIAPTAMQKMAHPEGEY         GTIMTLSSW+TSSVEEVASTGP
Sbjct: 63  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
           GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCL 220
           NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWK++  L
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWL 220
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359 Back     alignment and structure
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369 Back     alignment and structure
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387 Back     alignment and structure
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392 Back     alignment and structure
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370 Back     alignment and structure
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 Back     alignment and structure
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 Back     alignment and structure
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 Back     alignment and structure
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410 Back     alignment and structure
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 Back     alignment and structure
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 Back     alignment and structure
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 Back     alignment and structure
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412 Back     alignment and structure
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 Back     alignment and structure
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 Back     alignment and structure
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352 Back     alignment and structure
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 Back     alignment and structure
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352 Back     alignment and structure
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374 Back     alignment and structure
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374 Back     alignment and structure
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
1gox_A 370 (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu 1e-132
2nzl_A 392 Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G 1e-123
1p4c_A 380 L(+)-mandelate dehydrogenase; TIM barrel, hydroxy 1e-120
3sgz_A 352 Hydroxyacid oxidase 2; flavoprotein, homology, INH 1e-117
2nli_A 368 Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid 1e-115
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 1e-107
3sr7_A 365 Isopentenyl-diphosphate delta-isomerase; isopenten 2e-43
1p0k_A 349 Isopentenyl-diphosphate delta-isomerase; terpene b 9e-31
3vkj_A 368 Isopentenyl-diphosphate delta-isomerase; type 2 is 8e-26
1vcf_A 332 Isopentenyl-diphosphate delta-isomerase; TIM barre 3e-20
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 Back     alignment and structure
 Score =  376 bits (968), Expect = e-132
 Identities = 198/215 (92%), Positives = 210/215 (97%)

Query: 3   EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
           EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM 
Sbjct: 3   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62

Query: 63  TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
           TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 63  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122

Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
           GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182

Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
           NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWK++
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDV 217
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 Back     alignment and structure
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 Back     alignment and structure
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 Back     alignment and structure
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 Back     alignment and structure
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 Back     alignment and structure
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 Back     alignment and structure
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 Back     alignment and structure
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
3sgz_A 352 Hydroxyacid oxidase 2; flavoprotein, homology, INH 100.0
2nzl_A 392 Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G 100.0
1p4c_A 380 L(+)-mandelate dehydrogenase; TIM barrel, hydroxy 100.0
1gox_A 370 (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu 100.0
2nli_A 368 Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid 100.0
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 100.0
2qr6_A 393 IMP dehydrogenase/GMP reductase; NP_599840.1, G re 99.9
1vcf_A 332 Isopentenyl-diphosphate delta-isomerase; TIM barre 99.82
3sr7_A 365 Isopentenyl-diphosphate delta-isomerase; isopenten 99.72
1p0k_A 349 Isopentenyl-diphosphate delta-isomerase; terpene b 99.72
3r2g_A 361 Inosine 5'-monophosphate dehydrogenase; structural 99.71
3vkj_A 368 Isopentenyl-diphosphate delta-isomerase; type 2 is 99.47
1ypf_A 336 GMP reductase; GUAC, purines, pyrimidines, nucleos 99.43
1eep_A 404 Inosine 5'-monophosphate dehydrogenase; alpha-beta 99.31
2c6q_A 351 GMP reductase 2; TIM barrel, metal-binding, NADP, 99.31
1gte_A 1025 Dihydropyrimidine dehydrogenase; electron transfer 98.58
1f76_A 336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 98.35
2e6f_A 314 Dihydroorotate dehydrogenase; chagas disease, pyri 97.8
1vhn_A 318 Putative flavin oxidoreducatase; structural genomi 97.76
3khj_A 361 Inosine-5-monophosphate dehydrogenase; enzyme-inhi 97.5
1jub_A 311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 97.47
1ep3_A 311 Dihydroorotate dehydrogenase B (PYRD subunit); het 97.39
1wv2_A265 Thiazole moeity, thiazole biosynthesis protein THI 97.02
4fo4_A 366 Inosine 5'-monophosphate dehydrogenase; structural 96.68
2gjl_A 328 Hypothetical protein PA1024; 2-nitropropane dioxyg 94.91
2z6i_A 332 Trans-2-enoyl-ACP reductase II; fatty acid synthes 94.85
3tjx_A 354 Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh 94.53
4ef8_A 354 Dihydroorotate dehydrogenase; phenyl isothiocyanat 94.43
3b0p_A 350 TRNA-dihydrouridine synthase; TIM barrel, oxidored 93.26
3bw2_A 369 2-nitropropane dioxygenase; TIM barrel, oxidoreduc 89.21
3bo9_A 326 Putative nitroalkan dioxygenase; TM0800, structura 88.99
3oix_A 345 Putative dihydroorotate dehydrogenase; dihydrooro 88.87
1xm3_A264 Thiazole biosynthesis protein THIG; structural gen 88.86
3ffs_A 400 Inosine-5-monophosphate dehydrogenase; beta-alpha 88.76
1ea0_A 1479 Glutamate synthase [NADPH] large chain; oxidoreduc 87.1
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Back     alignment and structure
Probab=100.00  E-value=4.1e-68  Score=487.04  Aligned_cols=221  Identities=36%  Similarity=0.560  Sum_probs=200.4

Q ss_pred             CCChHHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEeccccccc
Q 026729            4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK   83 (234)
Q Consensus         4 ~~~i~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~   83 (234)
                      ++|++|||+.||++||+.+|+||+|||+||.|+++|+++|++|+|+||+|+||+++||+|||||+++++||+|||+|+++
T Consensus         2 ~~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~   81 (352)
T 3sgz_A            2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS   81 (352)
T ss_dssp             CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             CCCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729           84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL  162 (234)
Q Consensus        84 l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~  162 (234)
                      |+||+||+++||||+++|++|++||+|++|+|||+++.+ ++.|||||+++|++.++++|+|||++||+|||||||+|+.
T Consensus        82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~  161 (352)
T 3sgz_A           82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL  161 (352)
T ss_dssp             GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred             hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            999999999999999999999999999999999998876 7899999999999999999999999999999999999999


Q ss_pred             CchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCccccc
Q 026729          163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVM  231 (234)
Q Consensus       163 G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~~  231 (234)
                      |+||+|+||+|.+|++++++++.... .   .....+   .....++|+++|++|+|||+.|++||.|-
T Consensus       162 g~R~~d~r~~~~~p~~~~~~~~~~~~-~---~~~~~~---~~~~~~d~~~~w~~i~~lr~~~~~PvivK  223 (352)
T 3sgz_A          162 GNRRRDKRNQLNLEANILKAALRALK-E---EKPTQS---VPVLFPKASFCWNDLSLLQSITRLPIILK  223 (352)
T ss_dssp             CCCHHHHHHHHHSCHHHHTTCC----------------------CCCTTCCHHHHHHHHHHCCSCEEEE
T ss_pred             CcchhhhhcCCCCCcccchhhhcccc-c---ccccch---hhhhccCCCCCHHHHHHHHHhcCCCEEEE
Confidence            99999999999999888888775421 0   001111   12266899999999999999999999864
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Back     alignment and structure
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Back     alignment and structure
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Back     alignment and structure
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Back     alignment and structure
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Back     alignment and structure
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Back     alignment and structure
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Back     alignment and structure
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Back     alignment and structure
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Back     alignment and structure
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Back     alignment and structure
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Back     alignment and structure
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Back     alignment and structure
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* Back     alignment and structure
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Back     alignment and structure
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Back     alignment and structure
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Back     alignment and structure
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Back     alignment and structure
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* Back     alignment and structure
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* Back     alignment and structure
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Back     alignment and structure
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Back     alignment and structure
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A Back     alignment and structure
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Back     alignment and structure
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 234
d1goxa_ 359 c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia 5e-65
d1p4ca_ 353 c.1.4.1 (A:) Membrane-associated (S)-mandelate deh 2e-56
d1kbia1 414 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal 1e-55
d1tb3a1 349 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus 5e-50
d1vcfa1 310 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i 3e-28
d1p0ka_ 329 c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera 1e-27
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  203 bits (517), Expect = 5e-65
 Identities = 198/215 (92%), Positives = 210/215 (97%)

Query: 3   EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
           EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM 
Sbjct: 2   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61

Query: 63  TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
           TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121

Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
           GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181

Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
           NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWK++
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDV 216
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 Back     information, alignment and structure
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 Back     information, alignment and structure
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 Back     information, alignment and structure
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 Back     information, alignment and structure
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
d1tb3a1 349 Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI 100.0
d1goxa_ 359 Glycolate oxidase {Spinach (Spinacia oleracea) [Ta 100.0
d1kbia1 414 Flavocytochrome b2, C-terminal domain {Baker's yea 100.0
d1p4ca_ 353 Membrane-associated (S)-mandelate dehydrogenase {P 100.0
d1p0ka_ 329 Isopentenyl-diphosphate delta-isomerase {Bacillus 99.87
d1vcfa1 310 Isopentenyl-diphosphate delta-isomerase {Thermus t 99.83
d1gtea2312 Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su 95.42
d1pvna1 362 Inosine monophosphate dehydrogenase (IMPDH) {Tritr 94.76
d1eepa_ 388 Inosine monophosphate dehydrogenase (IMPDH) {Lyme 94.55
d1jr1a1 378 Inosine monophosphate dehydrogenase (IMPDH) {Chine 93.79
d1zfja1 365 Inosine monophosphate dehydrogenase (IMPDH) {Strep 92.69
d2cu0a1 368 Inosine monophosphate dehydrogenase (IMPDH) {Pyroc 92.56
d1vrda1 330 Inosine monophosphate dehydrogenase (IMPDH) {Therm 91.45
d2b4ga1 312 Dihydroorotate dehydrogenase {Trypanosoma brucei [ 88.67
d1ep3a_ 311 Dihydroorotate dehydrogenase {Lactococcus lactis, 87.73
d1juba_ 311 Dihydroorotate dehydrogenase {Lactococcus lactis, 84.63
d1d3ga_ 367 Dihydroorotate dehydrogenase {Human (Homo sapiens) 81.85
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-55  Score=400.08  Aligned_cols=220  Identities=36%  Similarity=0.579  Sum_probs=192.9

Q ss_pred             CCChHHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEeccccccc
Q 026729            4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK   83 (234)
Q Consensus         4 ~~~i~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~   83 (234)
                      ++||+|||+.||++||+.+|+||+|||+||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+||||++++
T Consensus         2 ~~~i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~   81 (349)
T d1tb3a1           2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS   81 (349)
T ss_dssp             CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             cccHHHHHHHHHHHCCHHHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729           84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL  162 (234)
Q Consensus        84 l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~  162 (234)
                      +.|+++|.++|++|+++|++|++||+++.++|+|.+..+ ++.|||+|+++|+..+.++++|++++|++++++|+|.|+.
T Consensus        82 ~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~  161 (349)
T d1tb3a1          82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL  161 (349)
T ss_dssp             GTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSC
T ss_pred             ccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhh
Confidence            999999999999999999999999999999999987655 7899999999999999999999999999999999999999


Q ss_pred             CchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCcccc
Q 026729          163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDV  230 (234)
Q Consensus       163 G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~  230 (234)
                      |+|++|+|++|.+|..+...++......       ...........++.++|++++|||+.|++|+.+
T Consensus       162 ~~~~~d~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~  222 (349)
T d1tb3a1         162 GNRRRDKRNQLNLEANILLKDLRALKEE-------KPTQSVPVSFPKASFCWNDLSLLQSITRLPIIL  222 (349)
T ss_dssp             CCCHHHHHTTCCCCC----CCSCCCCC--------------------CCCCHHHHHHHHTTCCSCEEE
T ss_pred             cchhhhhhccccCCcccchhhhhhhhhc-------cccccccccccCCCCCHHHHHHHHHhcCCCccc
Confidence            9999999999999977665554322110       000111223456889999999999999999976
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Back     information, alignment and structure
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Back     information, alignment and structure
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} Back     information, alignment and structure
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure