Citrus Sinensis ID: 026747

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAGAVMEAKAQLVGIHDRVRSDMEGDQPPASVSSTTQGVKRVATATNPNAEDAAELLRMCLQCGIPKTFSNTRGMVCPVCSDRPPADISNESKKKGSIIKDREKSKRMKGQSSHATWKSETEMQLRQQFD
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccccccHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccHHccccccHHHHHHHHHHccccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHccccccccccHHHHHHHHHHHHcccccccccccEEEEEcccEEccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MMSLSLIQDYssageekeeeddeqihyqsssdDEANASAAAKRTvrydlprnsvdsglpsafdvfsqisgpprflnnslevkassidvnsqqsrrrnrknkkelpagaVMEAKAQLVGIHDrvrsdmegdqppasvssttqGVKRVATATNPNAEDAAELLRMCLqcgipktfsntrgmvcpvcsdrppadisneskkkgsiikdrekskrmkgqsshatwKSETEMQLRQQFD
Flexible Loop (DISEMBL)
MMSLSLIQDYSsageekeeeddEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSlevkassidvnsqqsrrrnrknkkelpagavmeakAQLVGIHDRVRSDMEgdqppasvssttqgvKRVATATNPNAEDAAELLRMCLQCGIPKTFSNTRGMVCPVCSdrppadisneskkkgsiikdrekskrmkgqsshatwksetemqlrqqfd
Low Complexity Region (SEG)
MMSLSLIQDYSSAGeekeeeddeQIHYQsssddeanasaaaKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVnsqqsrrrnrknkkELPAGAVMEAKAQLVGIHDRVRSDMEGDQPPASVSSTTQGVKRVATATNPNAEDAAELLRMCLQCGIPKTFSNTRGMVCPVCSDRPPADISNESKKKGSIIKDREKSKRMKGQSSHATWKSETEMQLRQQFD
Disordered region (IsUnstruct)
*************************************************************************************************************************************************************AELLRMCLQCGIPKTFSNTRGMVCPVC**************************************************
Disordered Region (DISOPRED)
**SLSL********************************************************DVFSQISGPPRFLNN*************************************************************************************MCLQCGIPKTFSNTRGMVCP*******************************************EMQLRQQ**
Disordered Region (DISEMBL)
MMSLSLIQ*********************************KRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKAS*******************LPAGAVMEAKAQLVGIHDRVRS*******************RVATATNPNAEDAAELLRMCLQCGIPKTFSNTRGMVCPVCSDRPPADIS******************************ETEMQLRQQFD
Disordered Region (DISPRO)
***********************************************************SAFDVFSQISGPPRFLNNSL*********************KKELPAGAVMEAKAQLVGIHDRV**D***********************TNPNAEDAAELLRMCLQCGIPKTFS*TRGMV******************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAGAVMEAKAQLVGIHDRVRSDMEGDQPPASVSSTTQGVKRVATATNPNAEDAAELLRMCLQCGIPKTFSNTRGMVCPVCSDRPPADISNESKKKGSIIKDREKSKRMKGQSSHATWKSETEMQLRQQFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
356524842	248	PREDICTED: uncharacterized protein LOC10	0.978	0.923	0.634	3e-79
388508958	242	unknown [Medicago truncatula]	0.974	0.942	0.627	3e-75
356512069	243	PREDICTED: uncharacterized protein LOC10	0.978	0.942	0.619	2e-73
225448313	246	PREDICTED: uncharacterized protein LOC10	0.978	0.930	0.604	2e-72
388506978	240	unknown [Lotus japonicus]	0.918	0.895	0.6	2e-69
449438185	249	PREDICTED: uncharacterized protein LOC10	0.982	0.923	0.583	8e-69
116779317	248	unknown [Picea sitchensis]	0.961	0.907	0.507	2e-57
18424795	227	uncharacterized protein [Arabidopsis tha	0.957	0.986	0.559	3e-56
224070664	183	predicted protein [Populus trichocarpa]	0.713	0.912	0.628	3e-55
156707999	267	putative transcription factor [Triticum	0.991	0.868	0.470	2e-51

>gi|356524842|ref|XP_003531037.1| PREDICTED: uncharacterized protein LOC100780521 [Glycine max]

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/252 (63%), Positives = 185/252 (73%), Gaps = 23/252 (9%)

Query: 2   MSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDE--------------ANASAAAKRTVRY 47
           MSLSLIQ YSSA EE+++ED  Q H   +SD E              AN  +   R++  
Sbjct: 1   MSLSLIQGYSSA-EEEQDEDQPQPH---NSDLEDSDDDDAAAGTITAANHPSLGDRSIFD 56

Query: 48  DLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSR---RRNRKNKKEL 104
            +P     SGLPSAFD FS+I+GPP+FLNNS+E    S D + QQ +   RR RKNKK+L
Sbjct: 57  HVPNPPSASGLPSAFDAFSEIAGPPQFLNNSVEEYKPSRDADEQQGKHANRRRRKNKKDL 116

Query: 105 PAGAVMEAKAQLVGIHDRVRSDMEGDQPPASVS-STTQGVKRVATATNPNAEDAAELLRM 163
           P GAV+EAK QLVGIH+RVRSD+ G QPP S +  T++G KRV TATNPNAEDAA+LLRM
Sbjct: 117 PTGAVVEAKPQLVGIHERVRSDINGSQPPTSAALGTSEGGKRVPTATNPNAEDAADLLRM 176

Query: 164 CLQCGIPKTFSNTRGMVCPVCSDRPPA-DISNESKKKGSIIKDREKSKRMKGQSSHATWK 222
           CLQCGIPKT+SN RGMVCPVC DRPP  D S ESKKKGS +KD+EKSKRMKGQSSHATWK
Sbjct: 177 CLQCGIPKTYSNARGMVCPVCGDRPPKDDTSAESKKKGSTVKDKEKSKRMKGQSSHATWK 236

Query: 223 SETEMQLRQQFD 234
           SETEM LRQQFD
Sbjct: 237 SETEMHLRQQFD 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508958|gb|AFK42545.1| unknown [Medicago truncatula]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 155/247 (62%), Positives = 182/247 (73%), Gaps = 19/247 (7%)

Query: 2   MSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDE-------ANASAAAK-----RTVRYDL 49
           MSLSLIQ YSSA  E+EEED   IH  S SDD+       A  SAA+      R++    
Sbjct: 1   MSLSLIQGYSSA--EEEEEDQPHIH-NSVSDDQDDADYNSAEPSAASHPSLGDRSIFDHH 57

Query: 50  PRNSVDSGLPSAFDVFSQISGPPRFLNNSL-EVKASSIDVNSQQSRRRNRKNKKELPAGA 108
           P     SGLPSAFD FS+I GPP+FLN+S  E      D   Q+S RR+RK K++LP GA
Sbjct: 58  PPPPSASGLPSAFDAFSEIPGPPQFLNHSTGEFNPPQND--HQRSSRRHRKEKRDLPTGA 115

Query: 109 VMEAKAQLVGIHDRVRSDMEGDQPPASVS-STTQGVKRVATATNPNAEDAAELLRMCLQC 167
           V+EAKAQLVGIH+RVRSD+ G QPP   + ST++  KRV TATNPNAEDAAELLRMC+QC
Sbjct: 116 VVEAKAQLVGIHERVRSDINGGQPPTPATVSTSETGKRVPTATNPNAEDAAELLRMCVQC 175

Query: 168 GIPKTFSNTRGMVCPVCSDRPPADISNESKKKGSIIKDREKSKRMKGQSSHATWKSETEM 227
           GIPKT+S+ RGMVCPVC DRPP + S E+KKKGS +KD+EKSKRM+GQSSHA+WKSETEM
Sbjct: 176 GIPKTYSSARGMVCPVCGDRPPPEPSAEAKKKGSTVKDKEKSKRMRGQSSHASWKSETEM 235

Query: 228 QLRQQFD 234
           QLRQ FD
Sbjct: 236 QLRQHFD 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512069|ref|XP_003524743.1| PREDICTED: uncharacterized protein LOC100807207 [Glycine max]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/247 (61%), Positives = 177/247 (71%), Gaps = 18/247 (7%)

Query: 2   MSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEA------NASAAAKRTVRYDLPRNSVD 55
           MSLSLIQ YSSA    E+ED  Q H     D +       N  +   R++   +P     
Sbjct: 1   MSLSLIQGYSSA----EDEDQPQPHDSDLEDSDDEAAAAANHPSLGDRSIFDHVPNPPSA 56

Query: 56  SGLPSAFDVFSQISGPPRFLNNSLEV---KASSIDVNSQQSR---RRNRKNKKELPAGAV 109
           SGLPSAFD FS+I+ PP+FLNNS+E      SS D + QQ +   RR RK+KK+LP GAV
Sbjct: 57  SGLPSAFDAFSEIAEPPQFLNNSVEEYNNNPSSRDADEQQGKHTNRRRRKDKKDLPTGAV 116

Query: 110 MEAKAQLVGIHDRVRSDMEGDQPPASVSS-TTQGVKRVATATNPNAEDAAELLRMCLQCG 168
           +EAK QLVGIH+RVRSD+ G Q P S +S T++G K   TATNPNAEDAAELLRMCLQCG
Sbjct: 117 VEAKPQLVGIHERVRSDINGSQAPTSAASGTSEGGKWAPTATNPNAEDAAELLRMCLQCG 176

Query: 169 IPKTFSNTRGMVCPVCSDRPPA-DISNESKKKGSIIKDREKSKRMKGQSSHATWKSETEM 227
           IPKT+S+ RGMVCPVC DRPP  D S ESKKKGS +KD+EKSKRMKGQSSHATWKSETEM
Sbjct: 177 IPKTYSSARGMVCPVCGDRPPKDDTSTESKKKGSTVKDKEKSKRMKGQSSHATWKSETEM 236

Query: 228 QLRQQFD 234
            LRQQFD
Sbjct: 237 HLRQQFD 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448313|ref|XP_002265235.1| PREDICTED: uncharacterized protein LOC100251961 [Vitis vinifera] gi|147777022|emb|CAN74476.1| hypothetical protein VITISV_032714 [Vitis vinifera] gi|296085667|emb|CBI29466.3| unnamed protein product [Vitis vinifera]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/250 (60%), Positives = 183/250 (73%), Gaps = 21/250 (8%)

Query: 2   MSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEAN--ASAAAKRTV----RYDLPRNSVD 55
           MSL+LIQ YSSA    EEE++++    SS +D+ N  A A   R +     +  P  S  
Sbjct: 1   MSLALIQGYSSA----EEEENDRFSQNSSEEDDQNDVAYAPLSRPIGDKPSFHFPTASSG 56

Query: 56  SGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNK--KELPAGAVMEAK 113
           S LPSAFD FS+ISGPP FLNN ++ +AS+ DV  Q+ R    KN+  KELPAGAV+++K
Sbjct: 57  SALPSAFDAFSEISGPPDFLNNCVQEQASAEDVERQRRRHGGWKNRSEKELPAGAVVKSK 116

Query: 114 AQLVGIHDRVRSDMEGD-------QPPASVSSTTQG-VKRVATATNPNAEDAAELLRMCL 165
           AQLVGIH+RVRSD+EG+       QPP    STTQG  KRVATA NPNAEDAAELLRMC+
Sbjct: 117 AQLVGIHERVRSDIEGNLAPKSSVQPPKGSLSTTQGEGKRVATAANPNAEDAAELLRMCM 176

Query: 166 QCGIPKTFSNTRGMVCPVCSDRPPADISNES-KKKGSIIKDREKSKRMKGQSSHATWKSE 224
           QCGIPKT+S+ RGMVCP C DRP  D + E+ KKKGS IK++EK+KRMKGQSSHA+WKSE
Sbjct: 177 QCGIPKTYSSARGMVCPQCGDRPLEDANKETDKKKGSTIKEKEKNKRMKGQSSHASWKSE 236

Query: 225 TEMQLRQQFD 234
           TEMQLRQQ+D
Sbjct: 237 TEMQLRQQYD 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506978|gb|AFK41555.1| unknown [Lotus japonicus]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/230 (60%), Positives = 167/230 (72%), Gaps = 15/230 (6%)

Query: 19  EEDDEQIHYQSSSDDE---------ANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQIS 69
           +ED+    Y S+SD++         A   + A R++   LP  S  S LPSAFD FS++S
Sbjct: 12  DEDEHHQPYISNSDEDHDGDGEPSTAAHPSLADRSIFDHLPPQS-SSALPSAFDAFSEVS 70

Query: 70  GPPRFLNNSLE----VKASSIDVNSQQSRRRNRKNKKELPAGAVMEAKAQLVGIHDRVRS 125
           GPP+FLNNS+E    V+  +     ++  RR RK KK+LP+GAV+EAK QLVGIH+RVRS
Sbjct: 71  GPPQFLNNSMEEYNPVREEAEQEQERRGSRRQRKVKKDLPSGAVLEAKPQLVGIHERVRS 130

Query: 126 DMEGDQPPASVS-STTQGVKRVATATNPNAEDAAELLRMCLQCGIPKTFSNTRGMVCPVC 184
           D+ G QPP S + ST++  KRV + TNP  EDAA+LLRMCLQCGIPKTFSN RGMVCPVC
Sbjct: 131 DINGSQPPTSTTLSTSEETKRVPSVTNPTPEDAADLLRMCLQCGIPKTFSNARGMVCPVC 190

Query: 185 SDRPPADISNESKKKGSIIKDREKSKRMKGQSSHATWKSETEMQLRQQFD 234
            DRPP D S E+K KGS IKD+EKSKRMKGQSSHA+WKSETEM LRQQFD
Sbjct: 191 GDRPPKDPSTETKNKGSTIKDKEKSKRMKGQSSHASWKSETEMHLRQQFD 240

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438185|ref|XP_004136870.1| PREDICTED: uncharacterized protein LOC101218280 [Cucumis sativus] gi|449478896|ref|XP_004155447.1| PREDICTED: uncharacterized protein LOC101224609 [Cucumis sativus]

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 147/252 (58%), Positives = 178/252 (70%), Gaps = 22/252 (8%)

Query: 2   MSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEAN---------ASAAAKRTVR----YD 48
           MSLSL+Q YSSA  E+E + +   ++ SS DD+ +         ++     ++R    ++
Sbjct: 1   MSLSLLQGYSSA--EEEAQHNSVFNHTSSDDDDEDLASAPAAAASTVTVNLSIRDKSLFE 58

Query: 49  LPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVN-----SQQSRRRNRKNKKE 103
           LP+ S   GLPSAFD FS++SGPP FLNNS+E  A+  D +          RRNRK KK+
Sbjct: 59  LPQPSSQPGLPSAFDAFSEVSGPPEFLNNSVEEYAAPRDADQPRGGHGHGGRRNRKEKKD 118

Query: 104 LPAGAVMEAKAQLVGIHDRVRSDMEGDQPPASVSS-TTQGVKRVATATNPNAEDAAELLR 162
           LP GAV+EAKAQLVGIH+RVRSD+E +    S  S  T   KRVATA NPNAEDAAELLR
Sbjct: 119 LPTGAVLEAKAQLVGIHERVRSDVESNHSSNSSISNATPESKRVATAANPNAEDAAELLR 178

Query: 163 MCLQCGIPKTFSNTRGMVCPVCSDRPPADISNESKKKGSIIKDREKSKRMKGQSSHATWK 222
           MCL CGIPKTFSN RGM CP+C DRPP +  +ESKKKGS +KD+EK KRM+GQSSHATWK
Sbjct: 179 MCLHCGIPKTFSNARGMFCPLCGDRPP-EPDSESKKKGSTVKDKEKIKRMRGQSSHATWK 237

Query: 223 SETEMQLRQQFD 234
           SETEMQLRQQFD
Sbjct: 238 SETEMQLRQQFD 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779317|gb|ABK21234.1| unknown [Picea sitchensis]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/256 (50%), Positives = 166/256 (64%), Gaps = 31/256 (12%)

Query: 2   MSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLP-RNSVDSGLPS 60
           MSL+L+Q YSS   E+EE   E     S  D + N         +  +P + +  S LPS
Sbjct: 1   MSLALVQGYSS---EEEETPQEAFRTDSDEDSDENEKRNEYPKQKLSMPLQPTKGSLLPS 57

Query: 61  AFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNR----------KNKKELPAGAVM 110
           AFD FS+++GPP FLNNS     +S  + ++ S +RN           + KKE  AG V+
Sbjct: 58  AFDAFSEVTGPPEFLNNS-----ASEPIPTRPSEKRNSFGGWQAAKDPRTKKEPRAGIVL 112

Query: 111 EAKAQLVGIHDRVRSDMEGD---------QPPASVSSTT-QGVKRVATATNPNAEDAAEL 160
           EAKAQLVG+H+RVRSD+ G           PP +V S T   V++  +A  P  EDAA+L
Sbjct: 113 EAKAQLVGVHERVRSDVAGTIARSPATAMPPPKNVPSPTLDNVRKTPSAAMPPPEDAAKL 172

Query: 161 LRMCLQCGIPKTFSNTR-GMVCPVCSDRPPADISNES-KKKGSIIKDREKSKRMKGQSSH 218
           LRMCLQCG+PKT+SN R G+VCPVC DRPP + ++E+ KKKGS IKD+EKSKR+KGQSSH
Sbjct: 173 LRMCLQCGVPKTYSNAREGLVCPVCGDRPPGNPNHENEKKKGSTIKDKEKSKRLKGQSSH 232

Query: 219 ATWKSETEMQLRQQFD 234
           A+WKSETEMQLRQQFD
Sbjct: 233 ASWKSETEMQLRQQFD 248

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424795|ref|NP_568986.1| uncharacterized protein [Arabidopsis thaliana] gi|14335086|gb|AAK59822.1| AT5g64160/MHJ24_14 [Arabidopsis thaliana] gi|21360483|gb|AAM47357.1| AT5g64160/MHJ24_14 [Arabidopsis thaliana] gi|21592667|gb|AAM64616.1| unknown [Arabidopsis thaliana] gi|332010465|gb|AED97848.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/236 (55%), Positives = 171/236 (72%), Gaps = 12/236 (5%)

Query: 2   MSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSV---DSGL 58
           MSL+L+Q YSSA EE+ EE      Y +S +D  N     + +  +D   ++    ++GL
Sbjct: 1   MSLTLLQGYSSAEEEEAEER-AFGDYDNSDEDGDNDVRRYESSSVFDFSASASSAKNAGL 59

Query: 59  PSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAGAVMEAKAQLVG 118
           PSA DVFSQISGPP FLNN  E    +   +++ + R +RK KK  P G VMEAK QLVG
Sbjct: 60  PSADDVFSQISGPPEFLNNRTEADNEASARDAEHANRISRKKKKVKPKGVVMEAKPQLVG 119

Query: 119 IHDRVRSDMEGDQPPASVSSTTQGVKRVATATNPNAEDAAELLRMCLQCGIPKTFSNTRG 178
           IH+RVR+D+  D PP+S S    G KR++TATNPNAE++A+LLRMC+QCG+PKT+++ RG
Sbjct: 120 IHERVRNDI--DAPPSSES----GEKRISTATNPNAEESADLLRMCVQCGVPKTYTSARG 173

Query: 179 MVCPVCSDRPPADISNESKKKGSIIKDREKSKRMKGQSSHATWKSETEMQLRQQFD 234
           MVCP+C DRP  D+  ++KKKGS IKD+EKSKRM+GQSSHA+WKSETEMQLRQ FD
Sbjct: 174 MVCPICGDRPLPDV--DAKKKGSTIKDKEKSKRMRGQSSHASWKSETEMQLRQTFD 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070664|ref|XP_002303187.1| predicted protein [Populus trichocarpa] gi|222840619|gb|EEE78166.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 115/183 (62%), Positives = 134/183 (73%), Gaps = 16/183 (8%)

Query: 68  ISGPPRFLNNSLEVKASSID-VNSQQSRRR-------NRKN-------KKELPAGAVMEA 112
           +SGPP+FL+NS+E      D +  QQ + R       N  N       KK+LP+GAV+EA
Sbjct: 1   VSGPPQFLSNSVEEYGVGADHIQQQQGKHRKTWKRSSNNNNYNQRKDKKKDLPSGAVVEA 60

Query: 113 KAQLVGIHDRVRSDM-EGDQPPASVSSTTQGVKRVATATNPNAEDAAELLRMCLQCGIPK 171
           K  LV I +RVRSD+  G+  P+  S+  +G KR++TATNP AEDAAELLRMCLQCGIPK
Sbjct: 61  KPVLVAISERVRSDVGAGELSPSVPSTIEEGGKRISTATNPAAEDAAELLRMCLQCGIPK 120

Query: 172 TFSNTRGMVCPVCSDRPPADISNESKKKGSIIKDREKSKRMKGQSSHATWKSETEMQLRQ 231
           TFS+  GMVCPVC DRPP D S ESKKKGS IKD+EKSKRMKGQSSHATWKSETEM LRQ
Sbjct: 121 TFSSASGMVCPVCGDRPPNDTSKESKKKGSAIKDKEKSKRMKGQSSHATWKSETEMHLRQ 180

Query: 232 QFD 234
           QFD
Sbjct: 181 QFD 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156707999|gb|ABU93259.1| putative transcription factor [Triticum aestivum]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/268 (47%), Positives = 153/268 (57%), Gaps = 36/268 (13%)

Query: 2   MSLSLIQDYSSA---------GEEKEEEDDEQIHYQSSSDDEANASA--AAKRTVRYDLP 50
           MSL+L+  YSSA         G E  +  D       S  DE +A +  AAK   R +  
Sbjct: 1   MSLALLGGYSSAEDDDPAAGAGVELSDSGDSSAEEAGSDGDEKSAPSKPAAKPRPRVNPS 60

Query: 51  RNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAGAVM 110
               DS LPSA DVF++ISGPP FLN  +       +      RR N K +K  P GAV+
Sbjct: 61  PGDGDSSLPSALDVFAEISGPPAFLNRRVAQPEEVGEALGVLDRRSNSKRRKPPPPGAVV 120

Query: 111 EAKAQLVGIHDRVRSDME-GDQPPASVSST----TQGVKRVAT----------------- 148
            AK QLV I +RV SD++ G  PP +V S       G +RV++                 
Sbjct: 121 AAKPQLVAIRERVSSDVKNGANPPVAVVSAKPQLVAGHERVSSDMKNGASPPGSVEGKRK 180

Query: 149 --ATNPNAEDAAELLRMCLQCGIPKTFSNTRGMVCPVCSDRPPADISNESKKKGSIIKDR 206
             A NP  EDAAELLRMCLQCGIPKT+S+ +GMVCPVC+DR P       KKKGS +KD+
Sbjct: 181 IGAANPGPEDAAELLRMCLQCGIPKTYSHAQGMVCPVCNDR-PVQAKEPEKKKGSAVKDK 239

Query: 207 EKSKRMKGQSSHATWKSETEMQLRQQFD 234
           EK KRM+GQSSHA+WKSETEM LRQQFD
Sbjct: 240 EKVKRMRGQSSHASWKSETEMALRQQFD 267

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2164406	227	AT5G64160 "AT5G64160" [Arabido	0.948	0.977	0.516	8.9e-54

TAIR|locus:2164406 AT5G64160 "AT5G64160" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 123/238 (51%), Positives = 155/238 (65%)

Query:     2 MSLSLIQDYSSAGXXXXXXXXXQIHYQXXXXXXXXXXXXXKRTVRYDLPRNSV---DSGL 58
             MSL+L+Q YSSA             Y              + +  +D   ++    ++GL
Sbjct:     1 MSLTLLQGYSSAEEEEAEERAFG-DYDNSDEDGDNDVRRYESSSVFDFSASASSAKNAGL 59

Query:    59 PSAFDVFSQISGPPRFLNNSLEV--KASSIDVXXXXXXXXXXXXXXELPAGAVMEAKAQL 116
             PSA DVFSQISGPP FLNN  E   +AS+ D                 P G VMEAK QL
Sbjct:    60 PSADDVFSQISGPPEFLNNRTEADNEASARDAEHANRISRKKKKVK--PKGVVMEAKPQL 117

Query:   117 VGIHDRVRSDMEGDQPPASVSSTTQGVKRVATATNPNAEDAAELLRMCLQCGIPKTFSNT 176
             VGIH+RVR+D+  D PP+S S    G KR++TATNPNAE++A+LLRMC+QCG+PKT+++ 
Sbjct:   118 VGIHERVRNDI--DAPPSSES----GEKRISTATNPNAEESADLLRMCVQCGVPKTYTSA 171

Query:   177 RGMVCPVCSDRPPADISNESKKKGSIIKDREKSKRMKGQSSHATWKSETEMQLRQQFD 234
             RGMVCP+C DRP  D+  ++KKKGS IKD+EKSKRM+GQSSHA+WKSETEMQLRQ FD
Sbjct:   172 RGMVCPICGDRPLPDV--DAKKKGSTIKDKEKSKRMRGQSSHASWKSETEMQLRQTFD 227


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.127   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      234       198   0.00083  111 3  11 23  0.38    33
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.21u 0.10s 17.31t   Elapsed:  00:00:01
  Total cpu time:  17.21u 0.10s 17.31t   Elapsed:  00:00:01
  Start:  Sat May 11 04:26:16 2013   End:  Sat May 11 04:26:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038422001 SubName- Full=Chromosome chr12 scaffold_93, whole genome shotgun sequence; (231 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
KOG3490	111	consensus Transcription elongation factor SPT4 [Tr	91.24
COG5204	112	SPT4 Transcription elongation factor SPT4 [Transcr	90.59
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	89.35
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	88.43
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	87.0
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	86.66
PF15559	108	DUF4660: Domain of unknown function (DUF4660)	86.43
PRK00420	112	hypothetical protein; Validated	84.12
COG1096	188	Predicted RNA-binding protein (consists of S1 doma	83.55
cd07973	98	Spt4 Transcription elongation factor Spt4. Spt4 is	82.62
PRK12496	164	hypothetical protein; Provisional	82.04

>KOG3490 consensus Transcription elongation factor SPT4 [Transcription]

Probab=91.24  E-value=0.074  Score=43.74  Aligned_cols=26  Identities=42%  Similarity=0.752  Sum_probs=24.6

Q ss_pred             HHHHHHhcCCCccccCCCCccccCCC
Q 026747          160 LLRMCLQCGIPKTFSNTRGMVCPVCS  185 (234)
Q Consensus       160 lLrMclqcgiPKt~s~argmvcPvcg  185 (234)
                      -||.||.|||=||+..-+--+||.|+
T Consensus         7 ~lRACllCs~Vkt~~~F~~dGC~Nc~   32 (111)
T KOG3490|consen    7 KLRACLLCSIVKTLNGFRKDGCENCP   32 (111)
T ss_pred             hhhhhhhhhhhhhhhhhhhcCCCCch
Confidence            48999999999999999999999998

>COG5204 SPT4 Transcription elongation factor SPT4 [Transcription]

Probab=90.59  E-value=0.13  Score=42.14  Aligned_cols=26  Identities=50%  Similarity=0.943  Sum_probs=23.9

Q ss_pred             HHHHHHhcCCCccccCCCCccccCCC
Q 026747          160 LLRMCLQCGIPKTFSNTRGMVCPVCS  185 (234)
Q Consensus       160 lLrMclqcgiPKt~s~argmvcPvcg  185 (234)
                      +-|.||.|||=||.+.-+--.||.|-
T Consensus         8 ~sRACl~Cgiv~t~n~F~~dGCpNc~   33 (112)
T COG5204           8 LSRACLGCGIVKTLNGFRKDGCPNCP   33 (112)
T ss_pred             hhhhhhhcceeeecccccccCCCCCc
Confidence            45899999999999999999999995

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=89.35  E-value=0.076  Score=33.56  Aligned_cols=25  Identities=32%  Similarity=0.812  Sum_probs=16.1

Q ss_pred             HHHHhcCCCccccCC-CCccccCCCC
Q 026747          162 RMCLQCGIPKTFSNT-RGMVCPVCSD  186 (234)
Q Consensus       162 rMclqcgiPKt~s~a-rgmvcPvcgd  186 (234)
                      |.|-.||.|-....+ ..|+||.||-
T Consensus         4 rfC~~CG~~t~~~~~g~~r~C~~Cg~   29 (32)
T PF09297_consen    4 RFCGRCGAPTKPAPGGWARRCPSCGH   29 (32)
T ss_dssp             SB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred             cccCcCCccccCCCCcCEeECCCCcC
Confidence            458899999888776 6999999984

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=88.43  E-value=0.2  Score=42.02  Aligned_cols=26  Identities=35%  Similarity=0.827  Sum_probs=20.3

Q ss_pred             HHhcCCCccccCCCCccccCCCCCCCC
Q 026747          164 CLQCGIPKTFSNTRGMVCPVCSDRPPA  190 (234)
Q Consensus       164 clqcgiPKt~s~argmvcPvcgdRp~~  190 (234)
                      |--||.|.-=-.+ --+||+||-+=..
T Consensus        31 Cp~Cg~PLF~KdG-~v~CPvC~~~~~~   56 (131)
T COG1645          31 CPKCGTPLFRKDG-EVFCPVCGYREVV   56 (131)
T ss_pred             CcccCCcceeeCC-eEECCCCCceEEE
Confidence            9999999977434 4899999976544

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=87.00  E-value=0.13  Score=34.06  Aligned_cols=24  Identities=42%  Similarity=0.973  Sum_probs=13.4

Q ss_pred             HHHHhcCCCccccCC----C-CccccCCC
Q 026747          162 RMCLQCGIPKTFSNT----R-GMVCPVCS  185 (234)
Q Consensus       162 rMclqcgiPKt~s~a----r-gmvcPvcg  185 (234)
                      +.|-+||-|-.+.--    | -+|||.||
T Consensus         1 kfC~~CG~~l~~~ip~gd~r~R~vC~~Cg   29 (34)
T PF14803_consen    1 KFCPQCGGPLERRIPEGDDRERLVCPACG   29 (34)
T ss_dssp             -B-TTT--B-EEE--TT-SS-EEEETTTT
T ss_pred             CccccccChhhhhcCCCCCccceECCCCC
Confidence            358899988777533    2 48999998

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=86.66  E-value=0.27  Score=31.91  Aligned_cols=24  Identities=33%  Similarity=0.840  Sum_probs=14.7

Q ss_pred             HHHhcCCCccccCCCCccccCCCC
Q 026747          163 MCLQCGIPKTFSNTRGMVCPVCSD  186 (234)
Q Consensus       163 MclqcgiPKt~s~argmvcPvcgd  186 (234)
                      -|-+||-.-||...-.||||-|+.
T Consensus         4 ~Cp~C~se~~y~D~~~~vCp~C~~   27 (30)
T PF08274_consen    4 KCPLCGSEYTYEDGELLVCPECGH   27 (30)
T ss_dssp             --TTT-----EE-SSSEEETTTTE
T ss_pred             CCCCCCCcceeccCCEEeCCcccc
Confidence            488999999999999999999983

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>PF15559 DUF4660: Domain of unknown function (DUF4660)

Probab=86.43  E-value=0.51  Score=38.72  Aligned_cols=29  Identities=31%  Similarity=0.524  Sum_probs=25.5

Q ss_pred             CCCCCCChhhhhccccCCcccccchhhhhc
Q 026747           54 VDSGLPSAFDVFSQISGPPRFLNNSLEVKA   83 (234)
Q Consensus        54 ~~S~LPSA~DaFseIsGPP~FLnn~v~e~~   83 (234)
                      ..-.||...++|.-|+- |-||-|...+++
T Consensus        30 ~~~~LP~PDeLFrsVsr-PaFLyNPlnKqI   58 (108)
T PF15559_consen   30 KAERLPGPDELFRSVSR-PAFLYNPLNKQI   58 (108)
T ss_pred             ccCcCCCHHHHHhhcCc-cccccCcccccc
Confidence            34489999999999999 899999998874

>PRK00420 hypothetical protein; Validated

Probab=84.12  E-value=0.52  Score=38.39  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=24.1

Q ss_pred             HHhcCCCccccCCCCccccCCCCCCCCCCch
Q 026747          164 CLQCGIPKTFSNTRGMVCPVCSDRPPADISN  194 (234)
Q Consensus       164 clqcgiPKt~s~argmvcPvcgdRp~~~~~~  194 (234)
                      |--||.|-+-......+||+||........+
T Consensus        26 CP~Cg~pLf~lk~g~~~Cp~Cg~~~~v~~~e   56 (112)
T PRK00420         26 CPVCGLPLFELKDGEVVCPVHGKVYIVKSDE   56 (112)
T ss_pred             CCCCCCcceecCCCceECCCCCCeeeeccHH
Confidence            8889999997666679999999966654433

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]

Probab=83.55  E-value=0.17  Score=44.70  Aligned_cols=30  Identities=20%  Similarity=0.546  Sum_probs=25.3

Q ss_pred             HHHHHHHHHhcCCCccccCCCCccccCCCCC
Q 026747          157 AAELLRMCLQCGIPKTFSNTRGMVCPVCSDR  187 (234)
Q Consensus       157 aadlLrMclqcgiPKt~s~argmvcPvcgdR  187 (234)
                      -+=++++|..||-|--+ ..+.|.||.||..
T Consensus       145 lGVI~A~CsrC~~~L~~-~~~~l~Cp~Cg~t  174 (188)
T COG1096         145 LGVIYARCSRCRAPLVK-KGNMLKCPNCGNT  174 (188)
T ss_pred             ceEEEEEccCCCcceEE-cCcEEECCCCCCE
Confidence            34457899999999999 7888999999953

>cd07973 Spt4 Transcription elongation factor Spt4

Probab=82.62  E-value=0.6  Score=37.13  Aligned_cols=25  Identities=40%  Similarity=0.753  Sum_probs=22.0

Q ss_pred             HHHHHhcCCCccccCCCCccccCCC
Q 026747          161 LRMCLQCGIPKTFSNTRGMVCPVCS  185 (234)
Q Consensus       161 LrMclqcgiPKt~s~argmvcPvcg  185 (234)
                      ||.|+.|++=+|+..-..-+||.|+
T Consensus         3 lrAC~~C~~I~~~~qf~~~gCpnC~   27 (98)
T cd07973           3 LRACLLCSLIKTEDQFERDGCPNCE   27 (98)
T ss_pred             CchhccCCcccccccccCCCCCCCc
Confidence            6899999999998876678999994

Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl

>PRK12496 hypothetical protein; Provisional

Probab=82.04  E-value=0.57  Score=39.32  Aligned_cols=23  Identities=26%  Similarity=0.853  Sum_probs=17.6

Q ss_pred             HHHHhcCCCccccCC-CCccccCCCC
Q 026747          162 RMCLQCGIPKTFSNT-RGMVCPVCSD  186 (234)
Q Consensus       162 rMclqcgiPKt~s~a-rgmvcPvcgd  186 (234)
                      .+|..||  +.|... -+.+||+||-
T Consensus       128 ~~C~gC~--~~~~~~~~~~~C~~CG~  151 (164)
T PRK12496        128 KVCKGCK--KKYPEDYPDDVCEICGS  151 (164)
T ss_pred             EECCCCC--ccccCCCCCCcCCCCCC
Confidence            4599999  778553 3689999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	234
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	80.14

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.14  E-value=0.23  Score=31.69  Aligned_cols=23  Identities=35%  Similarity=0.865  Sum_probs=21.5

Q ss_pred             HHhcCCCccccCCCCccccCCCC
Q 026747          164 CLQCGIPKTFSNTRGMVCPVCSD  186 (234)
Q Consensus       164 clqcgiPKt~s~argmvcPvcgd  186 (234)
                      |-+|+---||..+-.+|||-||-
T Consensus         6 CP~C~seytYedg~l~vCPeC~h   28 (38)
T d2akla2           6 CPQCNSEYTYEDGALLVCPECAH   28 (38)
T ss_dssp             CTTTCCCCCEECSSSEEETTTTE
T ss_pred             CCCCCCcceEcCCCEEECCcccC
Confidence            78999999999999999999984