Citrus Sinensis ID: 026753

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGNSNSLVPCLLCLLTFSVYEFIMSDAVFIKLGY
Secondary Structure (PSIPRED)
cccHHHHccccccccccccccccHHHHHHHcccccccccccccccccccHHHHcccccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccccccHHHHccccccccccHHcccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccEccccccccccHcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccEcccccccccccccEcccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEHccc
Coil and Loop (DISEMBL)
MAQTMLLMSgvstshagnlkrdSLVTFqtqmlrpkpfshlmfnplsneSLTAAAASSSSKAFSTVALFksktkappktkkveskpkvedgifgtsggfgftkqneLFVGRVAMIGFAASLlgegitgkgILAQLNletgipiyeaePLLLFFILFTLLGAIgalgdrgkfvdepdeptglggavippgkglrsalglkeggnsnslvpCLLCLLTFSVYEFIMSDAVFIKLGY
Flexible Loop (DISEMBL)
MAQTMLLMSgvstshagnlkRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVAlfksktkappktkkveskpkvedgifgtsggfgFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTglggavippgKGLRSALGLKEGGNSNSLVPCLLCLLTFSVYEFIMSDAVFIKLGY
Low Complexity Region (SEG)
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEsltaaaasssskafstvalFksktkappktkkVESKPKVEDgifgtsggfgftKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPlllffilftllGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGNSNSLVPCLLCLLTFSVYEFIMSDAVFIKLGY
Disordered region (IsUnstruct)
*****************************************************************************************GIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFV***********AVI*********LGL****NSNSLVPCLLCLLTFSVYEFIMSDAVFIKL**
Disordered Region (DISOPRED)
*************************************************************************************************FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDR**********************GLRSALGLKEGGNSNSLVPCLLCLLTFSVYEFIMSDAVFIKLGY
Disordered Region (DISEMBL)
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNES*************STVALFKS**************PKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGNSNSLVPCLLCLLTFSVYEFIMSDAVFIKLGY
Disordered Region (DISPRO)
********SGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLS************SKAFSTVALFKSKTK***********PKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGNSNSLVPCLLCLLTFSVYEFIMSDAVFIKLGY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGNSNSLVPCLLCLLTFSVYEFIMSDAVFIKLGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q02060	274	Photosystem II 22 kDa pro	N/A	no	0.884	0.751	0.650	5e-55
P54773	276	Photosystem II 22 kDa pro	N/A	no	0.811	0.684	0.673	5e-50
Q9FPP4	276	Photosystem II 22 kDa pro	N/A	no	0.811	0.684	0.658	8e-49
Q9SMB4	274	Photosystem II 22 kDa pro	N/A	no	0.832	0.708	0.676	1e-47
Q9XF91	265	Photosystem II 22 kDa pro	no	no	0.785	0.690	0.683	2e-47

>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1

 Score =  214 bits (544), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 147/226 (65%), Positives = 166/226 (73%), Gaps = 20/226 (8%)

Query: 1   MAQTMLLM-SGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSS 59
           MAQ MLLM  GVST++  +LKR++L+  Q Q ++PK       +  SN   +   +SSSS
Sbjct: 1   MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPK-------SSTSNLFFSPLPSSSSS 53

Query: 60  K--AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117
               F T+ALFKSK KAP K +K   K KVEDG+FGTSGG GFTK+NELFVGRVAMIGFA
Sbjct: 54  SSTVFKTLALFKSKAKAPKKVEK--PKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFA 111

Query: 118 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177
           ASLLGEGITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDEP   
Sbjct: 112 ASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPT-- 169

Query: 178 TGLGGAVIPPGKGLRSALGLKEGG------NSNSLVPCLLCLLTFS 217
           TGL  AVIPPGK +RSALGLK  G       SN L    L  L F+
Sbjct: 170 TGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFA 215

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.
Spinacia oleracea (taxid: 3562)

>sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1

 Score =  197 bits (501), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 152/208 (73%), Gaps = 19/208 (9%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL +           ++SLV    + L+PKP S L    L     +++  +SSSK
Sbjct: 1   MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSK 53

Query: 61  AFST-VALFKSKTK------APPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAM 113
             ST VALFKSK K      APPK K+     KVEDGIFGTSGG GFTKQNELFVGRVAM
Sbjct: 54  FTSTTVALFKSKAKAPPKKVAPPKEKQ-----KVEDGIFGTSGGIGFTKQNELFVGRVAM 108

Query: 114 IGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE 173
           IGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKFVD+
Sbjct: 109 IGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168

Query: 174 PDEPTGLGGAVIPPGKGLRSALGLKEGG 201
           P  PTGL  AVIPPGK  +SALGL EGG
Sbjct: 169 PTPPTGLEKAVIPPGKSFKSALGLSEGG 196

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Solanum lycopersicum (taxid: 4081)

>sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1

 Score =  193 bits (491), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 137/208 (65%), Positives = 149/208 (71%), Gaps = 19/208 (9%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL +           ++SLV    + L+PKP S L    L     ++    SSSK
Sbjct: 1   MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSK 53

Query: 61  AFST-VALFKSKTK------APPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAM 113
             ST VALFKSK K      APPK K+     KVEDGIFGTSGG GFTKQNELFVGRVAM
Sbjct: 54  FTSTTVALFKSKAKAPPKKVAPPKEKQ-----KVEDGIFGTSGGIGFTKQNELFVGRVAM 108

Query: 114 IGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE 173
           IGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG+F+D+
Sbjct: 109 IGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168

Query: 174 PDEPTGLGGAVIPPGKGLRSALGLKEGG 201
           P   TGL  AVIPPGK  +SALGL EGG
Sbjct: 169 PAPATGLEKAVIPPGKSFKSALGLSEGG 196

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Solanum sogarandinum (taxid: 52705)

>sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/201 (67%), Positives = 151/201 (75%), Gaps = 7/201 (3%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL +           ++SLV    + L+PKP S      L  +  +A+A++SS  
Sbjct: 1   MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHF 53

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
             +TVALFKSK KAP K    + K KVEDGIFGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 54  TSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGAL DRGKF+D+P  PTGL
Sbjct: 114 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGL 173

Query: 181 GGAVIPPGKGLRSALGLKEGG 201
             AVIPPGKG +SALGL EGG
Sbjct: 174 DKAVIPPGKGFKSALGLSEGG 194

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Nicotiana tabacum (taxid: 4097)

>sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/202 (68%), Positives = 151/202 (74%), Gaps = 19/202 (9%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL SGV+  H         +  ++ + +PK   H +F  LS  S    A  S  +
Sbjct: 1   MAQTMLLTSGVTAGH--------FLRNKSPLAQPK--VHHLF--LSGNS--PVALPSRRQ 46

Query: 61  AFSTVALFKSKTKAPPKTKKVES-KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
           +F  +ALFK KTKA    KKVE  K KVEDGIFGTSGG GFTK NELFVGRVAMIGFAAS
Sbjct: 47  SFVPLALFKPKTKA--APKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAAS 104

Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
           LLGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P  PTG
Sbjct: 105 LLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTG 162

Query: 180 LGGAVIPPGKGLRSALGLKEGG 201
           L  AVIPPGK +RSALGLKE G
Sbjct: 163 LEKAVIPPGKNVRSALGLKEQG 184

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
188509922	277	putative photosystem II protein [Gossypi	0.832	0.700	0.799	6e-67
255545402	275	Photosystem II 22 kDa protein, chloropla	0.836	0.709	0.761	3e-64
357463499	270	Photosystem II 22 kDa protein [Medicago	0.815	0.703	0.726	2e-63
133902325	278	putative photosystem II protein [Gossypi	0.832	0.697	0.789	2e-63
388510160	273	unknown [Lotus japonicus]	0.892	0.761	0.718	5e-63
217072844	262	unknown [Medicago truncatula]	0.815	0.725	0.721	1e-62
224063082	272	hypothetical protein POPTRDRAFT_816277 [	0.824	0.705	0.746	5e-62
225459564	270	PREDICTED: photosystem II 22 kDa protein	0.815	0.703	0.716	7e-59
133902304	278	putative photosystem II protein [Gossypi	0.832	0.697	0.774	3e-58
449465453	272	PREDICTED: photosystem II 22 kDa protein	0.802	0.687	0.717	4e-58

>gi|188509922|gb|ACD56611.1| putative photosystem II protein [Gossypioides kirkii]

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 163/204 (79%), Positives = 174/204 (85%), Gaps = 10/204 (4%)

Query: 1   MAQTMLLMSG--VSTSHAGNLKRDS-LVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASS 57
           MAQTML+MS   VS SH  NLKRD  L+ FQ Q L+PKPFSH +FNPLSN     A A+S
Sbjct: 1   MAQTMLVMSSTSVSASHVVNLKRDHPLLHFQAQGLKPKPFSHFLFNPLSN-----AVAAS 55

Query: 58  SSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117
           SSKAF+T ALFKSKTKA PK  + + KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 56  SSKAFTTFALFKSKTKAAPKKAEPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 115

Query: 118 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177
           ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDEP  P
Sbjct: 116 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--P 173

Query: 178 TGLGGAVIPPGKGLRSALGLKEGG 201
           TG+ GAVIPPGKG+R ALGLKEGG
Sbjct: 174 TGVEGAVIPPGKGVRGALGLKEGG 197

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545402|ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223546847|gb|EEF48344.1| Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 153/201 (76%), Positives = 169/201 (84%), Gaps = 6/201 (2%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTML MSGVST H  +LKRD L+ FQ   LRPKPFS L+F+PL     T +++ + SK
Sbjct: 1   MAQTMLFMSGVSTRHVVDLKRDPLLQFQVDRLRPKPFSSLLFSPLP----TNSSSFAPSK 56

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
            F+T ALFKSK KA PK   V+ K KVEDG+FGTSGG GFTKQNELFVGRVAM+GFAASL
Sbjct: 57  TFTTFALFKSKAKAAPKKTVVKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMLGFAASL 116

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGEG+TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P  PTG+
Sbjct: 117 LGEGLTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGI 174

Query: 181 GGAVIPPGKGLRSALGLKEGG 201
            GAVIPPGKG R+ALGLKEGG
Sbjct: 175 EGAVIPPGKGFRAALGLKEGG 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463499|ref|XP_003602031.1| Photosystem II 22 kDa protein [Medicago truncatula] gi|355491079|gb|AES72282.1| Photosystem II 22 kDa protein [Medicago truncatula] gi|388508062|gb|AFK42097.1| unknown [Medicago truncatula]

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/201 (72%), Positives = 162/201 (80%), Gaps = 11/201 (5%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLLMS VS++++ +LK+D L+  Q Q LRP+ FS + FNPL + S        SS+
Sbjct: 1   MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPR-FSDVSFNPLPSNS-----KCFSSR 54

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
            F+T+ALFKSKTKAP K  K     KVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS+
Sbjct: 55  TFTTLALFKSKTKAPAKVVKKPKP-KVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASI 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE +TGKGILAQLNLETGIPIYEAEPLLLFFI+FTLLGAIGALGDRGKFVD  DEP   
Sbjct: 114 LGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVD--DEPN-- 169

Query: 181 GGAVIPPGKGLRSALGLKEGG 201
            G VIPPGKG RSALGL EGG
Sbjct: 170 TGGVIPPGKGFRSALGLSEGG 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133902325|gb|ABO41853.1| putative photosystem II protein [Gossypium hirsutum]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 161/204 (78%), Positives = 171/204 (83%), Gaps = 10/204 (4%)

Query: 1   MAQTMLLMSG--VSTSHAGNLKRD-SLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASS 57
           MAQTML+MS   VSTSH  NLKRD +L+ FQ Q L+PKP SH +FNP SN       A+S
Sbjct: 1   MAQTMLVMSSTRVSTSHVVNLKRDHTLLHFQAQGLKPKPSSHFLFNPHSN-----TVAAS 55

Query: 58  SSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117
           SSKAF+T ALFK KTKA PK    + KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 56  SSKAFTTFALFKPKTKAAPKKAAPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 115

Query: 118 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177
           ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP  P
Sbjct: 116 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP--P 173

Query: 178 TGLGGAVIPPGKGLRSALGLKEGG 201
           TG+ GAVIPPGKG+R ALGLKEGG
Sbjct: 174 TGIEGAVIPPGKGIRGALGLKEGG 197

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510160|gb|AFK43146.1| unknown [Lotus japonicus]

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 161/224 (71%), Positives = 177/224 (79%), Gaps = 16/224 (7%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPL-SNESLTAAAASSSS 59
           MAQTMLLMS VS+S++ +LK+D L+  Q+Q LRPK FS L FNPL SN SL       SS
Sbjct: 1   MAQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRPK-FSQLSFNPLPSNSSLF------SS 53

Query: 60  KAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
           + F+T+ALFKSK KAPP  K V+ KPKVEDG+FGTSGG GFTKQNELFVGRVAMIGFAAS
Sbjct: 54  RTFTTLALFKSKAKAPP-PKVVKQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAAS 112

Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
           LLGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+ + PTG
Sbjct: 113 LLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD-ESPTG 171

Query: 180 LGGAVIPPGKGLRSALGLKEGG------NSNSLVPCLLCLLTFS 217
           L  AVIPPGKGLR ALGL EGG       SN L    L  L F+
Sbjct: 172 LDKAVIPPGKGLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFA 215

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072844|gb|ACJ84782.1| unknown [Medicago truncatula]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 145/201 (72%), Positives = 161/201 (80%), Gaps = 11/201 (5%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLLMS VS++++ +LK+D L+  Q Q LRP+ FS + FNPL + S        SS+
Sbjct: 1   MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPR-FSDVSFNPLPSNS-----KCFSSR 54

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
            F+T+ALFKSKTKAP K  K     KVEDGIFGTS GFGFTKQNELFVGRVAMIGFAAS+
Sbjct: 55  TFTTLALFKSKTKAPAKVVKKPKP-KVEDGIFGTSRGFGFTKQNELFVGRVAMIGFAASI 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE +TGKGILAQLNLETGIPIYEAEPLLLFFI+FTLLGAIGALGDRGKFVD  DEP   
Sbjct: 114 LGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVD--DEPN-- 169

Query: 181 GGAVIPPGKGLRSALGLKEGG 201
            G VIPPGKG RSALGL EGG
Sbjct: 170 TGGVIPPGKGFRSALGLSEGG 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063082|ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa] gi|118488707|gb|ABK96164.1| unknown [Populus trichocarpa] gi|222842713|gb|EEE80260.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 150/201 (74%), Positives = 166/201 (82%), Gaps = 9/201 (4%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTM+LMSGVST    +LKRD L+ FQ Q LRP PFS L++NPL +++       SSS 
Sbjct: 1   MAQTMVLMSGVSTRQVVDLKRDPLLQFQVQRLRPAPFSRLLYNPLPSKA-------SSSN 53

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
           AF+T+ALFK +TKA PK      KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 54  AFTTLALFKPRTKAVPKKAAPPPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE ITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+P   TG+
Sbjct: 114 LGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDPT--TGI 171

Query: 181 GGAVIPPGKGLRSALGLKEGG 201
            GAVIPPGK  R+ALGLKEGG
Sbjct: 172 EGAVIPPGKSFRAALGLKEGG 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459564|ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic [Vitis vinifera] gi|302141814|emb|CBI19017.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 144/201 (71%), Positives = 160/201 (79%), Gaps = 11/201 (5%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTML+   VS     +LKR  L+    Q LRPKPFSH              ++S+SS 
Sbjct: 1   MAQTMLITPSVSGHSVLDLKRQPLL----QRLRPKPFSH------LLLPPLPTSSSTSSP 50

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
           AF+T+ALFKSKTKA P  K  + KP+VEDGIFGTSGG GFTK+NELFVGRVAM+GFAASL
Sbjct: 51  AFTTLALFKSKTKAAPSKKVTKPKPQVEDGIFGTSGGIGFTKKNELFVGRVAMLGFAASL 110

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+ D PTG+
Sbjct: 111 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDD-DPPTGI 169

Query: 181 GGAVIPPGKGLRSALGLKEGG 201
            GAVIPPGKGLRSALGL+EGG
Sbjct: 170 EGAVIPPGKGLRSALGLREGG 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133902304|gb|ABO41835.1| putative photosystem II protein [Gossypium raimondii]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 158/204 (77%), Positives = 169/204 (82%), Gaps = 10/204 (4%)

Query: 1   MAQTMLLMSGVSTSHAG--NLKRD-SLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASS 57
           MAQTML+MS  S S +   NLKRD +L+ FQ Q L+PKP SH +FNP SN       A+S
Sbjct: 1   MAQTMLVMSSTSVSTSHVVNLKRDHTLLHFQAQGLKPKPSSHFLFNPHSN-----TVAAS 55

Query: 58  SSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117
           SSKAF+T ALFK KTKA PK    + KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 56  SSKAFTTFALFKPKTKAAPKKAAPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 115

Query: 118 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177
           ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP  P
Sbjct: 116 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP--P 173

Query: 178 TGLGGAVIPPGKGLRSALGLKEGG 201
           TG+ GAVIPPGKG+R ALGLKEGG
Sbjct: 174 TGIEGAVIPPGKGIRGALGLKEGG 197

Source: Gossypium raimondii

Species: Gossypium raimondii

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465453|ref|XP_004150442.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like [Cucumis sativus] gi|449529497|ref|XP_004171736.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like [Cucumis sativus]

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/202 (71%), Positives = 158/202 (78%), Gaps = 15/202 (7%)

Query: 2   AQTMLLMSGVSTSHAGNLKRD-SLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           AQTMLL SGV   H   LKR+ SL    TQ      F+ L FNPL + S+     S   +
Sbjct: 3   AQTMLLTSGVCVGHGVCLKRELSLRPNYTQ------FTRLFFNPLPSHSV-----SLPPR 51

Query: 61  AFSTVALFKSKTKAPPKTKKVES-KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
            F+T+A+FKS+TKAPPK  KVE  K KVEDGIFGTSGG GFTKQNELFVGRVAMIGFAAS
Sbjct: 52  GFTTLAVFKSRTKAPPK--KVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS 109

Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
           +LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+D+P+  TG
Sbjct: 110 ILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATG 169

Query: 180 LGGAVIPPGKGLRSALGLKEGG 201
           L  AVIPPGK  RSALGLKEGG
Sbjct: 170 LERAVIPPGKSFRSALGLKEGG 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2823639	265	NPQ4 "NONPHOTOCHEMICAL QUENCHI	0.497	0.437	0.703	9.4e-40

TAIR|locus:2823639 NPQ4 "NONPHOTOCHEMICAL QUENCHING 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
 Identities = 83/118 (70%), Positives = 86/118 (72%)

Query:    84 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143
             K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIY
Sbjct:    69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIY 128

Query:   144 EAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGG 201
             EAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGK +RSALGLKE G
Sbjct:   129 EAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQG 184

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009517 "PSII associated light-harvesting complex II" evidence=TAS

GO:0010196 "nonphotochemical quenching" evidence=IMP

GO:0016168 "chlorophyll binding" evidence=TAS

GO:0051738 "xanthophyll binding" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_II0752	SubName- Full=Putative uncharacterized protein; (272 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_III1082	SubName- Full=Putative uncharacterized protein; (144 aa)				•			•		0.554
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)				•			•		0.479
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)				•			•		0.474
	estExt_Genewise1_v1.C_LG_II4195	SubName- Full=Putative uncharacterized protein; (140 aa)				•			•		0.473
	Lil2	HLIP/One helix protein (109 aa)				•			•		0.462
	estExt_fgenesh4_pg.C_LG_VII0722	photosystem II stability/assembly factor (394 aa)				•			•		0.434
	estExt_fgenesh4_pg.C_LG_VI0422	SubName- Full=Putative uncharacterized protein; (1365 aa)				•			•		0.418
	eugene3.02080025	hypothetical protein (465 aa)				•					0.405

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
PLN00084	214	PLN00084, PLN00084, photosystem II subunit S (PsbS	3e-09

>gnl|CDD|177707 PLN00084, PLN00084, photosystem II subunit S (PsbS); Provisional

 Score = 54.7 bits (131), Expect = 3e-09
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 102 KQNELFVGRVAMIGFAASLLGEGITGK-GILAQLNLETGIPIYEAEPLLLFFIL 154
           K  ELF GR+AM+GFA ++ G+ +TG  G L Q N ETG+P+ + E    FF+ 
Sbjct: 136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFLF 189

Length = 214

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	99.64
PLN00084	214	photosystem II subunit S (PsbS); Provisional	99.49
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	99.46
PHA02337	35	putative high light inducible protein	99.35
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	99.28
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	99.25
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	99.24
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	99.19
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	99.16
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	99.15
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	99.13
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	99.12
PLN00187	286	photosystem II light-harvesting complex II protein	99.09
PLN00014	250	light-harvesting-like protein 3; Provisional	99.08
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	99.05
PLN00171	324	photosystem light-harvesting complex -chlorophyll	98.94
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	98.88
PHA02337	35	putative high light inducible protein	98.43
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	97.91
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	97.86
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	97.85
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	97.73
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	97.7
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	97.7
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	97.68
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	97.61
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	97.55
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	97.54
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	97.53
PLN00187	286	photosystem II light-harvesting complex II protein	97.5
PLN00084	214	photosystem II subunit S (PsbS); Provisional	97.49
PLN00171	324	photosystem light-harvesting complex -chlorophyll	97.46
PLN00014	250	light-harvesting-like protein 3; Provisional	97.41
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	96.66
PLN02449	485	ferrochelatase	95.07

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=99.64  E-value=1.4e-16  Score=130.41  Aligned_cols=121  Identities=31%  Similarity=0.414  Sum_probs=67.1

Q ss_pred             cCCc-cCCCCccCCcchhhhhhhHHHHHHHHHHHHHHHhhChhh----HHhhhcc-cC-CCccchhhHHHHHHHHHHHHH
Q 026753           88 EDGI-FGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGI----LAQLNLE-TG-IPIYEAEPLLLFFILFTLLGA  160 (233)
Q Consensus        88 ed~~-f~~s~~~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~gi----L~Ql~~~-~G-~p~~~~~p~ll~~i~ftL~AA  160 (233)
                      .|++ |.+...+.|.+++|++|||+||+|+++.++.|++++.+.    .++.+.. .+ ++    -+....++.+.++++
T Consensus        15 fDPlgl~~~~~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~ig~   90 (156)
T PF00504_consen   15 FDPLGLSSDPDFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGGIP----VPAAGWAQILLFIGA   90 (156)
T ss_dssp             SSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTSSS----SHSHHHHHHHHHHHH
T ss_pred             CChhhcccchhHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhhhh----hhhHHHHHHHHHHhH
Confidence            6665 544446778899999999999999999999999998653    2222210 12 11    122222233334444


Q ss_pred             hhccCCCCccccCCCCCCCCCCcccCCCC-CcccccCcC------CCCCccccchhhHHhhHHH
Q 026753          161 IGALGDRGKFVDEPDEPTGLGGAVIPPGK-GLRSALGLK------EGGNSNSLVPCLLCLLTFS  217 (233)
Q Consensus       161 I~pL~~~G~~v~~~~ep~g~~~~~ipP~k-g~~~~lGl~------~fg~~aEL~NGRlAMLGfa  217 (233)
                      +....  .....+.. ......+ ..|++ ++ +++|+.      .+.+.+||+|||+||+|++
T Consensus        91 ~e~~~--~~~~~~~~-~~~~~~~-~~pG~~~~-dplgl~~~~~~~~~~~~~El~NGRlAMla~~  149 (156)
T PF00504_consen   91 LEPWR--QQGVPEPG-EGGGKDG-RYPGDLGF-DPLGLAKDPEEKEFMQLAELKNGRLAMLAFA  149 (156)
T ss_dssp             HHHHH--HHHTTTCC-TTSSSSS-SSSSSSSS-STSSTSSSCHSHHCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhh--cccccCCc-ccccccc-cCcccccc-chhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            43210  01111100 0000111 22332 34 456764      1235999999999999975

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=99.49  E-value=2.8e-14  Score=123.74  Aligned_cols=54  Identities=46%  Similarity=0.826  Sum_probs=50.2

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHhh-ChhhHHhhhcccCCCccchhhHHHHHHH
Q 026753          101 TKQNELFVGRVAMIGFAASLLGEGIT-GKGILAQLNLETGIPIYEAEPLLLFFIL  154 (233)
Q Consensus       101 t~~aEl~NGRlAMlGf~a~l~~E~~T-G~giL~Ql~~~~G~p~~~~~p~ll~~i~  154 (233)
                      ++.+|+||||+||+||+++++.|++| |+|+++|++.++|+|+++.++++++|+.
T Consensus       135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~fFl~  189 (214)
T PLN00084        135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFLF  189 (214)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHHHHH
Confidence            57899999999999999999999999 9999999999999999999998766643

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=99.46  E-value=2.7e-14  Score=128.46  Aligned_cols=126  Identities=27%  Similarity=0.292  Sum_probs=75.9

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhhHH---hhhcccCCCccchhhHHHHHHHHHHHHHhhccCCCCccccC--CCC
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGILA---QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE--PDE  176 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~---Ql~~~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~G~~v~~--~~e  176 (233)
                      +.+|+.||||||+|+++.++.|++|+.|++.   |+  +.|...|...+..++.|-+.+.+.++....++..-+.  ..+
T Consensus        92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~--~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~  169 (250)
T PLN00101         92 VQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWY--DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD  169 (250)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccc--cccchhhcccchHHHHHHHHHHHHHHHHHhhcccCCCccccc
Confidence            5679999999999999999999999999873   33  2454444444333444434455555432111111000  000


Q ss_pred             C--C--C-CCCcccCCCCCcccccCcCC--CCCccccchhhHHhhHHH---HHHHHhccceeEe
Q 026753          177 P--T--G-LGGAVIPPGKGLRSALGLKE--GGNSNSLVPCLLCLLTFS---VYEFIMSDAVFIK  230 (233)
Q Consensus       177 p--~--g-~~~~~ipP~kg~~~~lGl~~--fg~~aEL~NGRlAMLGfa---li~~i~g~a~~~~  230 (233)
                      +  .  . ......+|+..| |+||+++  .-+.+||.||||||+++.   +=..++|.+++=|
T Consensus       170 ~~~~~~~~~~gd~~YPGG~F-DPLgl~~~~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~n  232 (250)
T PLN00101        170 PIFKQYSLPPNEVGYPGGIF-NPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFEN  232 (250)
T ss_pred             ccccccccCCccccCCCCcc-CccCCCccHHHHHHHHhhcchHHHHHhhHhheehccCCChHHH
Confidence            1  0  1 123456777656 6799863  225899999999999964   3334667666543

>PHA02337 putative high light inducible protein

Probab=99.35  E-value=5.6e-13  Score=88.33  Aligned_cols=32  Identities=41%  Similarity=0.560  Sum_probs=30.3

Q ss_pred             CcchhhhhhhHHHHHHHHHHHHHHHhhChhhH
Q 026753          100 FTKQNELFVGRVAMIGFAASLLGEGITGKGIL  131 (233)
Q Consensus       100 ft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL  131 (233)
                      ||+++|+||||+||+||+++++.|+.||+++-
T Consensus         1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip   32 (35)
T PHA02337          1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIP   32 (35)
T ss_pred             CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence            68999999999999999999999999999873

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=99.28  E-value=1.7e-12  Score=116.59  Aligned_cols=130  Identities=18%  Similarity=0.163  Sum_probs=72.4

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhH---HhhhcccCCCc-cchhhHHHHHHHHHHHHHhhccCCCCcc---
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL---AQLNLETGIPI-YEAEPLLLFFILFTLLGAIGALGDRGKF---  170 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL---~Ql~~~~G~p~-~~~~p~ll~~i~ftL~AAI~pL~~~G~~---  170 (233)
                      +.|.+++|+.||||||+|++++++.|++++.|+.   .|+.  .|... |......++.|.+.+.+.+...-.++..   
T Consensus        79 ~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~--Ag~~~~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg  156 (244)
T PLN00097         79 LKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWID--AAKWDGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPG  156 (244)
T ss_pred             HHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCcccc--CCcchhccccchhHHHHHHHHHHHHHHHHhhcccCCC
Confidence            3344678999999999999999999999998774   2322  33222 2111112233333334444321111100   


Q ss_pred             --ccCC---CCCCCCCCcccCCCCCcccccCcCCC------CCccccchhhHHhhHHH--HHH-HHhccceeEe
Q 026753          171 --VDEP---DEPTGLGGAVIPPGKGLRSALGLKEG------GNSNSLVPCLLCLLTFS--VYE-FIMSDAVFIK  230 (233)
Q Consensus       171 --v~~~---~ep~g~~~~~ipP~kg~~~~lGl~~f------g~~aEL~NGRlAMLGfa--li~-~i~g~a~~~~  230 (233)
                        -.+.   .+.........+|++.| ++||+...      -+.+|+.|||+||+++.  ++. .++|.+++=|
T Consensus       157 ~~~~~p~~~~~~~~~~~d~gYPgg~F-DPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~n  229 (244)
T PLN00097        157 SMNEDPLFGANKGDTNTDVGYPKGLF-DKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDN  229 (244)
T ss_pred             ccccccccccccCCcccccCCCCCCC-CccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHH
Confidence              0000   00011123455777656 57998631      13799999999999964  333 3666666543

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=99.25  E-value=4.6e-12  Score=114.69  Aligned_cols=129  Identities=22%  Similarity=0.355  Sum_probs=72.2

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhh----cccCC------CccchhhHHHHHHHHHHHHHhhccCCCCccc
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLN----LETGI------PIYEAEPLLLFFILFTLLGAIGALGDRGKFV  171 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~----~~~G~------p~~~~~p~ll~~i~ftL~AAI~pL~~~G~~v  171 (233)
                      +++|+.||||||+|++++++.|+++++|++.+..    ...|.      ..|+..+..++.+-+.+.+.++..-.++-..
T Consensus        86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~  165 (262)
T PLN00048         86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYK  165 (262)
T ss_pred             HHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccC
Confidence            5679999999999999999999999998875321    11221      1233444444444444555554311111000


Q ss_pred             cCC--CCC-CC----C--CCcccCCCC-CcccccCcCCCC------CccccchhhHHhhHHH--HHH-HHhccceeEec
Q 026753          172 DEP--DEP-TG----L--GGAVIPPGK-GLRSALGLKEGG------NSNSLVPCLLCLLTFS--VYE-FIMSDAVFIKL  231 (233)
Q Consensus       172 ~~~--~ep-~g----~--~~~~ipP~k-g~~~~lGl~~fg------~~aEL~NGRlAMLGfa--li~-~i~g~a~~~~~  231 (233)
                      +..  .+. .+    +  .+...+|+. +| +++|+....      +.+||-|||+||+++.  ++. .+.|.+++-+|
T Consensus       166 pG~~~~~~~~~~~~~~~~~~d~~yPG~~~f-DPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L  243 (262)
T PLN00048        166 PGSMGKQYFLGLEKGLGGSGNPAYPGGPFF-NPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNL  243 (262)
T ss_pred             CCcccccccccchhcccccccccccccccc-CccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHH
Confidence            000  000 00    0  012234554 56 578886311      3799999999999954  333 46666655443

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=99.24  E-value=8.9e-12  Score=113.18  Aligned_cols=129  Identities=22%  Similarity=0.301  Sum_probs=71.3

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhh-cccCCCccchhhHHHHHHHHHHHHHhhccCCCCcc----ccCCC
Q 026753          101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF----VDEPD  175 (233)
Q Consensus       101 t~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~-~~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~G~~----v~~~~  175 (233)
                      -+++|+.||||||+|+++.++.|++++.|++.... .+.|...|...+..++.+-+.+.+.+.-.-.++..    +..+.
T Consensus       100 ~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~  179 (267)
T PLN00098        100 FAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEP  179 (267)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccc
Confidence            36789999999999999999999999988865321 22343333333322333333345555421111100    00000


Q ss_pred             -CC--CCCCCcccCCCC-CcccccCcCCCC-------CccccchhhHHhhHHH--HHH-HHhccceeEe
Q 026753          176 -EP--TGLGGAVIPPGK-GLRSALGLKEGG-------NSNSLVPCLLCLLTFS--VYE-FIMSDAVFIK  230 (233)
Q Consensus       176 -ep--~g~~~~~ipP~k-g~~~~lGl~~fg-------~~aEL~NGRlAMLGfa--li~-~i~g~a~~~~  230 (233)
                       .+  .....+..+|+. +| +++|+....       +.+||-|||+||+++.  +.. .+.|.+++=|
T Consensus       180 ~~~~~~~~~~d~~yPGg~~F-DPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~n  247 (267)
T PLN00098        180 KLPNKTNPKPDVGYPGGLWF-DPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIEN  247 (267)
T ss_pred             cccccccCCCCCCCCCCccC-CcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHH
Confidence             00  000112234553 46 468885333       3699999999999954  333 4666665543

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=99.19  E-value=1.3e-11  Score=110.78  Aligned_cols=123  Identities=19%  Similarity=0.216  Sum_probs=64.3

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHh--h-hc------ccCCCccchhhHHHHHHHHHHHHHhhccCCCC
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ--L-NL------ETGIPIYEAEPLLLFFILFTLLGAIGALGDRG  168 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Q--l-~~------~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~G  168 (233)
                      +.|-+++|+.|||+||+|+++.++.|+++.....+-  + ..      ..|.++.+.....+..+-+.+++.+...  + 
T Consensus        79 ~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~--r-  155 (243)
T PLN00099         79 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQ--R-  155 (243)
T ss_pred             HHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHH--h-
Confidence            444467899999999999999999999753111110  0 00      0122221111011111223344444321  1 


Q ss_pred             ccccCCCCCCCCCCcccCCCCCcccccCcCCCC------CccccchhhHHhhHHH--HHHH--HhccceeEec
Q 026753          169 KFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGG------NSNSLVPCLLCLLTFS--VYEF--IMSDAVFIKL  231 (233)
Q Consensus       169 ~~v~~~~ep~g~~~~~ipP~kg~~~~lGl~~fg------~~aEL~NGRlAMLGfa--li~~--i~g~a~~~~~  231 (233)
                       ... + ++.    +-.+|+.+|+ ++|+....      +.+||-||||||+++.  ++.+  +.|.+++=+|
T Consensus       156 -~~~-~-~~~----~~~yPGd~FD-PlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL  220 (243)
T PLN00099        156 -SME-K-DPE----KKKYPGGAFD-PLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL  220 (243)
T ss_pred             -hcc-C-CCC----CCcCCCCcCC-cccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHH
Confidence             111 1 111    1124555674 68875311      3789999999999965  4444  4577665443

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=99.16  E-value=2.3e-11  Score=109.99  Aligned_cols=122  Identities=20%  Similarity=0.216  Sum_probs=70.1

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCccchhh---HHHHHHHHHHHHHhhccCCCCccccCCCCC
Q 026753          101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP---LLLFFILFTLLGAIGALGDRGKFVDEPDEP  177 (233)
Q Consensus       101 t~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~~~~~p---~ll~~i~ftL~AAI~pL~~~G~~v~~~~ep  177 (233)
                      .+.+|+.||||||+|++++++.|++||...++.     |.......+   ..++.+-+.+.+.++.     +...+..+|
T Consensus        95 ~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~a-----G~~~~~~~p~~~~~l~~~q~~lmg~~E~-----~R~~~~~~P  164 (255)
T PLN00170         95 YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA-----GADPGAIAPFSFGSLLGTQLLLMGWVES-----KRWVDFFNP  164 (255)
T ss_pred             HHHHHhhccHHHHHHHHhhhhHHHccCCChhhC-----CccccccCccchHHHHHHHHHHhhhhhh-----eeeccccCC
Confidence            356899999999999999999999998764332     322111111   1222233334444432     222221111


Q ss_pred             C------------------CCCCcccCCCCCcccccCcCCC--------C-------CccccchhhHHhhHHH--HHHHH
Q 026753          178 T------------------GLGGAVIPPGKGLRSALGLKEG--------G-------NSNSLVPCLLCLLTFS--VYEFI  222 (233)
Q Consensus       178 ~------------------g~~~~~ipP~kg~~~~lGl~~f--------g-------~~aEL~NGRlAMLGfa--li~~i  222 (233)
                      .                  ...+...+|+..+=|+||+...        +       +.+||.|||+||+++.  .+..-
T Consensus       165 ~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa~  244 (255)
T PLN00170        165 DSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEAG  244 (255)
T ss_pred             cccccccccccccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheeec
Confidence            0                  0112334566442367998741        1       4899999999999965  45556


Q ss_pred             hccceeEecC
Q 026753          223 MSDAVFIKLG  232 (233)
Q Consensus       223 ~g~a~~~~~~  232 (233)
                      .|.++.=+||
T Consensus       245 ~g~~p~~~l~  254 (255)
T PLN00170        245 QGKTPLGALG  254 (255)
T ss_pred             cCCCchhhhc
Confidence            6666544444

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=99.15  E-value=3.2e-11  Score=109.34  Aligned_cols=123  Identities=20%  Similarity=0.341  Sum_probs=68.3

Q ss_pred             CCcchhhhhhhHHHHHHHHHHHHHHHhhChhhH-H---hhhcccCCC-------ccchhh--------HHHHHHHHHHHH
Q 026753           99 GFTKQNELFVGRVAMIGFAASLLGEGITGKGIL-A---QLNLETGIP-------IYEAEP--------LLLFFILFTLLG  159 (233)
Q Consensus        99 Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL-~---Ql~~~~G~p-------~~~~~p--------~ll~~i~ftL~A  159 (233)
                      .+.+++|+.||||||+|++++++.|++++.|+. .   |+.  .|..       .|...+        ..++.+-+.+.+
T Consensus        89 ~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~--ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg  166 (262)
T PLN00025         89 ARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFK--AGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG  166 (262)
T ss_pred             HHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccc--cccccccccccccccCcccchhhhHHHHHHHHHHHHH
Confidence            344678999999999999999999999987662 1   221  1111       111111        111222223355


Q ss_pred             HhhccCCCCccccCCCCCCCCCCcccCCCCCcccccCcCCCC------CccccchhhHHhhHHH--HHH-HHhccceeEe
Q 026753          160 AIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGG------NSNSLVPCLLCLLTFS--VYE-FIMSDAVFIK  230 (233)
Q Consensus       160 AI~pL~~~G~~v~~~~ep~g~~~~~ipP~kg~~~~lGl~~fg------~~aEL~NGRlAMLGfa--li~-~i~g~a~~~~  230 (233)
                      ++......+     .  +-+...+-.+|+.-| ++||+....      +.+||-|||+||+++.  ++. .+.|.+++-|
T Consensus       167 ~~E~~r~~~-----~--~~~~~~d~~yPG~~F-DPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlen  238 (262)
T PLN00025        167 AVEGYRVNG-----G--PLGEGLDPLYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN  238 (262)
T ss_pred             HHHHhcccC-----C--cccccccCcCCcccC-CccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHH
Confidence            554321111     0  101011223566545 578886311      3889999999999964  444 4666766544


Q ss_pred             c
Q 026753          231 L  231 (233)
Q Consensus       231 ~  231 (233)
                      |
T Consensus       239 L  239 (262)
T PLN00025        239 L  239 (262)
T ss_pred             H
Confidence            3

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=99.13  E-value=2.1e-10  Score=103.57  Aligned_cols=29  Identities=38%  Similarity=0.444  Sum_probs=26.5

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhh
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGI  130 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~gi  130 (233)
                      +++|+.|||+||+|+++.++.|+++..|+
T Consensus        84 r~aElkhGR~AMlA~~G~l~~e~~~~~g~  112 (252)
T PLN00147         84 VQAELVHSRFAMAGVAGILFTDLLRVTGI  112 (252)
T ss_pred             HHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence            56799999999999999999999988775

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=99.12  E-value=2.7e-11  Score=109.03  Aligned_cols=120  Identities=17%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCccchhhHHHHHHHHHHHHHhhccCCCCccccCCCCC
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP  177 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~G~~v~~~~ep  177 (233)
                      +.|.+++|+.|||+||+|+++.++.|+++--+   ++.  .|...+......+..+-+.+++.++...     ..+.+++
T Consensus        70 ~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P~---w~~--ag~~~~~~~~~~l~~iqill~g~~E~~r-----~~~~~~~  139 (246)
T PLN00100         70 LPYLQEAELMNGRWAMAATAGILFTDAVGLPK---FWE--AGAEKYGLDLQTLVLIQVVVMAVLEAAR-----YRGFMKT  139 (246)
T ss_pred             HHHHHHHHhhcchHHHHHHhhhhHHHHhcccc---hhh--cchhhhccchhHHHHHHHHHHHHHhhhc-----ccccccc
Confidence            34456789999999999999999999864222   221  2222221111111122222345453311     1111111


Q ss_pred             CCCCCcccCCCCCcccccCcCC-CCCccccchhhHHhhHHH--HHHH-HhccceeEec
Q 026753          178 TGLGGAVIPPGKGLRSALGLKE-GGNSNSLVPCLLCLLTFS--VYEF-IMSDAVFIKL  231 (233)
Q Consensus       178 ~g~~~~~ipP~kg~~~~lGl~~-fg~~aEL~NGRlAMLGfa--li~~-i~g~a~~~~~  231 (233)
                       +. .+ .|+.-+| |++|+.. .-+.+||-||||||+++.  +..+ +.|.+++-+|
T Consensus       140 -g~-~~-~pg~~~F-DPLGl~~~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL  193 (246)
T PLN00100        140 -GE-SG-VLSFFPF-DPTGMDSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGL  193 (246)
T ss_pred             -cc-cC-CCCCCCC-CcccccHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHH
Confidence             10 01 2233346 3677742 225899999999999964  4443 6666655443

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=99.09  E-value=9.2e-11  Score=107.58  Aligned_cols=118  Identities=23%  Similarity=0.272  Sum_probs=64.3

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhc---ccCCCccchhh-----HHHHHHHHHHHHHhhccCCCCc
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL---ETGIPIYEAEP-----LLLFFILFTLLGAIGALGDRGK  169 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~---~~G~p~~~~~p-----~ll~~i~ftL~AAI~pL~~~G~  169 (233)
                      +-|.+++|++||||||+|++++++.|+++|..... -+.   ..|. .|...+     ..++.+-+.+.+.+..  .+..
T Consensus       130 l~r~REaELiHGRwAMLAvaG~lvpEll~G~~W~~-aG~~~~~~g~-~y~g~~~p~~~~~l~~iqvllmG~~E~--~R~~  205 (286)
T PLN00187        130 LQRFRECELIHGRWAMLATLGALSVEALTGVTWQD-AGKVELVDGS-SYLGQPLPFSITTLIWIEVLVIGYIEF--QRNA  205 (286)
T ss_pred             HHHHHHHHhhhhHHHHHHhhchhhHHhccCCcccc-cccccccccc-cccccccchhHHHHHHHHHHHHHHHHh--hhcc
Confidence            44668999999999999999999999997652211 010   0111 122111     1122222334444432  1111


Q ss_pred             cccCCCCCCCCCCcccCCCC-CcccccCcCCCC------CccccchhhHHhhHHH---HHHHHhcccee
Q 026753          170 FVDEPDEPTGLGGAVIPPGK-GLRSALGLKEGG------NSNSLVPCLLCLLTFS---VYEFIMSDAVF  228 (233)
Q Consensus       170 ~v~~~~ep~g~~~~~ipP~k-g~~~~lGl~~fg------~~aEL~NGRlAMLGfa---li~~i~g~a~~  228 (233)
                         +   .+. ... .+|+. +| +++|+....      +.+||.|||+||+++.   +-+.+.|.+++
T Consensus       206 ---~---~~~-~~~-~yPGg~~F-DPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi  265 (286)
T PLN00187        206 ---E---LDP-EKR-LYPGGKFF-DPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL  265 (286)
T ss_pred             ---C---CCC-CCC-CCCccccc-cccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence               1   111 111 23443 46 568885311      3789999999999954   33446665543

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=99.08  E-value=3.8e-11  Score=107.77  Aligned_cols=50  Identities=34%  Similarity=0.520  Sum_probs=41.3

Q ss_pred             cCCccCCCCc--cCCc-----chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcc
Q 026753           88 EDGIFGTSGG--FGFT-----KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE  137 (233)
Q Consensus        88 ed~~f~~s~~--~Gft-----~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~  137 (233)
                      |+.+|++|..  |.|-     +++|++|||+|||||++++++|++||+|+++|++.-
T Consensus       139 epv~FdtSiiPWWaW~~rf~l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f  195 (250)
T PLN00014        139 EPVLFDTSIIPWWAWVKRFHLPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF  195 (250)
T ss_pred             CCceeecccccHHHHHHhccCchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence            3344999844  3332     469999999999999999999999999999999863

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=99.05  E-value=2.2e-10  Score=100.72  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=27.7

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhh
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGI  130 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~gi  130 (233)
                      +-|-+++|+.|||+||+++++.++.|.++.-|.
T Consensus        72 ~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~  104 (209)
T PLN00089         72 LPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE  104 (209)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence            345578999999999999999999999875553

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=98.94  E-value=8.5e-10  Score=102.75  Aligned_cols=30  Identities=20%  Similarity=0.172  Sum_probs=26.7

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhhH
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGIL  131 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL  131 (233)
                      +++|+.|||+||+|+++.++.|++++.|..
T Consensus       149 reaELkHGR~AMLA~~G~lv~e~l~~~g~~  178 (324)
T PLN00171        149 FNFEILHARWAMLAALGVVIPEVLDLFGAV  178 (324)
T ss_pred             HHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence            457999999999999999999999877654

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=98.88  E-value=1.2e-09  Score=95.55  Aligned_cols=27  Identities=26%  Similarity=0.411  Sum_probs=24.3

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHH
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEG  124 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~  124 (233)
                      +-+.+.+|+.|||+||+++++.++.|.
T Consensus        61 ~~~~r~~ElkhGRlAMlA~~G~~~~~~   87 (202)
T PLN00120         61 FDRLRYVEIKHGRISMLAVVGYLVTEA   87 (202)
T ss_pred             HHHHHHHHhhcccHHHHhhccceeecc
Confidence            455688999999999999999999996

>PHA02337 putative high light inducible protein

Probab=98.43  E-value=1e-07  Score=63.44  Aligned_cols=27  Identities=7%  Similarity=-0.026  Sum_probs=20.8

Q ss_pred             CCCccccchhhHHhhHHH---HHHHHhccc
Q 026753          200 GGNSNSLVPCLLCLLTFS---VYEFIMSDA  226 (233)
Q Consensus       200 fg~~aEL~NGRlAMLGfa---li~~i~g~a  226 (233)
                      |++.+|.||||+||+||.   ++|.++|+.
T Consensus         1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~   30 (35)
T PHA02337          1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQI   30 (35)
T ss_pred             CccHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence            356899999999999974   455566654

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=97.91  E-value=5.1e-06  Score=68.25  Aligned_cols=28  Identities=36%  Similarity=0.443  Sum_probs=24.6

Q ss_pred             ccCCcchhhhhhhHHHHHHHHHHHHHHH
Q 026753           97 GFGFTKQNELFVGRVAMIGFAASLLGEG  124 (233)
Q Consensus        97 ~~Gft~~aEl~NGRlAMlGf~a~l~~E~  124 (233)
                      .+.+++.+|++|||+||+|+++.+++|.
T Consensus       129 ~~~~~~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen  129 EKEFMQLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             SHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3667899999999999999999999883

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=97.86  E-value=9.2e-06  Score=73.65  Aligned_cols=40  Identities=33%  Similarity=0.433  Sum_probs=34.6

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCC
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP  141 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p  141 (233)
                      +..|+.|||+||++|++.++++.+||+|+++++..-...|
T Consensus       161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP  200 (246)
T PLN00100        161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANP  200 (246)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCC
Confidence            5689999999999999999999999999999986433333

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=97.85  E-value=1.2e-05  Score=73.05  Aligned_cols=40  Identities=23%  Similarity=0.314  Sum_probs=34.5

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCc
Q 026753          103 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI  142 (233)
Q Consensus       103 ~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~  142 (233)
                      ..|+.|||+||+++++.+++|++||+|+++++..-.--|+
T Consensus       202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~  241 (252)
T PLN00147        202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPW  241 (252)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcc
Confidence            4699999999999999999999999999999865444443

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=97.73  E-value=2.3e-05  Score=70.88  Aligned_cols=41  Identities=24%  Similarity=0.365  Sum_probs=34.3

Q ss_pred             hhhhhhhHHHHHHHHHHHHHH-HhhChhhHHhhhcccCCCcc
Q 026753          103 QNELFVGRVAMIGFAASLLGE-GITGKGILAQLNLETGIPIY  143 (233)
Q Consensus       103 ~aEl~NGRlAMlGf~a~l~~E-~~TG~giL~Ql~~~~G~p~~  143 (233)
                      ..|+.|||+||+++++.+++| .+||+|+++++..-..-|+.
T Consensus       188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~  229 (243)
T PLN00099        188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH  229 (243)
T ss_pred             HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCcc
Confidence            479999999999999999999 57899999998754444443

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=97.70  E-value=1.5e-05  Score=72.35  Aligned_cols=40  Identities=35%  Similarity=0.531  Sum_probs=34.6

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCC
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP  141 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p  141 (233)
                      +..|+.|||+||+++++.++++++||+|++++|..-..-|
T Consensus       201 k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP  240 (250)
T PLN00101        201 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP  240 (250)
T ss_pred             HHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCC
Confidence            4589999999999999999999999999999986443344

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=97.70  E-value=2.2e-05  Score=69.45  Aligned_cols=28  Identities=39%  Similarity=0.599  Sum_probs=26.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhChhhH
Q 026753          104 NELFVGRVAMIGFAASLLGEGITGKGIL  131 (233)
Q Consensus       104 aEl~NGRlAMlGf~a~l~~E~~TG~giL  131 (233)
                      .|+.|||+||+|+++.++.|.+||+|++
T Consensus       180 ~El~NGRlAM~a~~g~~~~~~~tg~g~~  207 (209)
T PLN00089        180 KELKNGRLAMVAIGGIATGSAITGHGFP  207 (209)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence            5999999999999999999999999975

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=97.68  E-value=2.5e-05  Score=71.36  Aligned_cols=42  Identities=31%  Similarity=0.382  Sum_probs=36.4

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCcc
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY  143 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~~  143 (233)
                      +..|+.|||+||+++++.+++|++||+|+++++..-..-|+.
T Consensus       207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~  248 (262)
T PLN00025        207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVA  248 (262)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccc
Confidence            467999999999999999999999999999998755555544

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=97.61  E-value=3.4e-05  Score=70.43  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=32.1

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhc
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL  136 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~  136 (233)
                      +..|+.|||+||+++++.+++|++||+|++++|..
T Consensus       211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~  245 (262)
T PLN00048        211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLD  245 (262)
T ss_pred             HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHH
Confidence            45799999999999999999999999999998853

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=97.55  E-value=5.4e-05  Score=69.37  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=32.3

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhc
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL  136 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~  136 (233)
                      +..|+.|||+||+++++.++++.+||+|+++++..
T Consensus       216 k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~  250 (267)
T PLN00098        216 RTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMA  250 (267)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHH
Confidence            45899999999999999999999999999999864

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=97.54  E-value=5.4e-05  Score=68.61  Aligned_cols=36  Identities=31%  Similarity=0.356  Sum_probs=32.9

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcc
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE  137 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~  137 (233)
                      +.+|+.|||+||+++++.++++.+||+|+++++..-
T Consensus       198 k~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~H  233 (244)
T PLN00097        198 KLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSH  233 (244)
T ss_pred             HHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHH
Confidence            458999999999999999999999999999998643

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=97.53  E-value=7.7e-05  Score=65.64  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=24.1

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhCh
Q 026753          103 QNELFVGRVAMIGFAASLLGEGITGK  128 (233)
Q Consensus       103 ~aEl~NGRlAMlGf~a~l~~E~~TG~  128 (233)
                      ..|+.|||+||||+++.++.|.++|.
T Consensus       170 ~~EL~NGRLAMiai~G~~~qe~l~g~  195 (202)
T PLN00120        170 AIELNQGRAAQMGILALMVHEQLGVE  195 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            46999999999999999999999885

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=97.50  E-value=7.2e-05  Score=69.16  Aligned_cols=40  Identities=28%  Similarity=0.356  Sum_probs=34.4

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCC
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP  141 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p  141 (233)
                      +..|+.|||+||+++++.+++|.+||+|.+++|..-..-|
T Consensus       236 k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp  275 (286)
T PLN00187        236 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP  275 (286)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCc
Confidence            3579999999999999999999999999999886543334

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=97.49  E-value=4.1e-05  Score=67.26  Aligned_cols=24  Identities=42%  Similarity=0.652  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHhh-ChhhHHhhhc
Q 026753          113 MIGFAASLLGEGIT-GKGILAQLNL  136 (233)
Q Consensus       113 MlGf~a~l~~E~~T-G~giL~Ql~~  136 (233)
                      |+||...-+.+++| |.|.++|+..
T Consensus         1 mlgf~~ttvgdvvtrg~gp~eql~d   25 (214)
T PLN00084          1 MLGFFFTTVGDVVTRGAGPLEQLRD   25 (214)
T ss_pred             CcchhhcchhhhhccCCCcHHHhhh
Confidence            78888888888876 7788888764

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=97.46  E-value=8.7e-05  Score=69.71  Aligned_cols=39  Identities=28%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCC
Q 026753          103 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP  141 (233)
Q Consensus       103 ~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p  141 (233)
                      ..|+.|||+||+++++.+++|.+||+|+++++..-.--|
T Consensus       275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP  313 (324)
T PLN00171        275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDP  313 (324)
T ss_pred             HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCc
Confidence            469999999999999999999999999999986444344

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=97.41  E-value=3.9e-05  Score=69.57  Aligned_cols=31  Identities=10%  Similarity=0.181  Sum_probs=25.4

Q ss_pred             CccccchhhHHhhHHH---HHHHHhccceeEecC
Q 026753          202 NSNSLVPCLLCLLTFS---VYEFIMSDAVFIKLG  232 (233)
Q Consensus       202 ~~aEL~NGRlAMLGfa---li~~i~g~a~~~~~~  232 (233)
                      +.+|++|||+||+||+   ++|.++|.+++=++|
T Consensus       160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg  193 (250)
T PLN00014        160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMG  193 (250)
T ss_pred             chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHh
Confidence            6899999999999975   677788888765544

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=96.66  E-value=0.00077  Score=61.59  Aligned_cols=34  Identities=26%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhh
Q 026753          101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN  135 (233)
Q Consensus       101 t~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~  135 (233)
                      -+..|+-|||+||+++++.+++- .||+|.|++++
T Consensus       221 lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~  254 (255)
T PLN00170        221 LKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG  254 (255)
T ss_pred             HHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence            36789999999999999999877 79999999886

>PLN02449 ferrochelatase

Probab=95.07  E-value=0.012  Score=58.18  Aligned_cols=31  Identities=35%  Similarity=0.378  Sum_probs=27.9

Q ss_pred             CCccCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHh
Q 026753           95 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ  133 (233)
Q Consensus        95 s~~~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Q  133 (233)
                      .|.|||++        +||+||++.++.|++||+|.+++
T Consensus       455 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  485 (485)
T PLN02449        455 VWEWGWTK--------AAMLAVLLLLVLEVTSGFGNLHQ  485 (485)
T ss_pred             hhhhcccc--------hHHHHHHHHHHHHHHcCCCcCCC
Confidence            47899998        99999999999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	5e-04

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 15/49 (30%), Positives = 19/49 (38%)

Query: 94  TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI 142
               F   K  EL  GR+AM       +   +TGKG L  L      P+
Sbjct: 169 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	99.4
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	99.33
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	99.29
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	99.24
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	99.2
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	99.17
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	98.21
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.12
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	97.96
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	97.9
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	97.78
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	97.47

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=99.40  E-value=1.9e-13  Score=122.65  Aligned_cols=136  Identities=21%  Similarity=0.223  Sum_probs=74.9

Q ss_pred             CccCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhh-cccCCCccchhhHHHHHHHHHHHHHhhccCCC-----Cc
Q 026753           96 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDR-----GK  169 (233)
Q Consensus        96 ~~~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~-~~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~-----G~  169 (233)
                      ..+.|.+++|+.|||+||+|+++.++.|++++.|++..-. .+.|...+...+..++.+-+.+++.+...-.+     |.
T Consensus        97 e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~  176 (269)
T 2wsc_2           97 ESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGC  176 (269)
T ss_dssp             SCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTTHHHHHHHHHHTTSSCCCC
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHHHHHHHHHHHHhccccCCc
Confidence            3467788999999999999999999999999888762100 11233333222211112212234444321000     11


Q ss_pred             cccCC-CC-CCCCCCcccCCCC-CcccccCcCCCC-------CccccchhhHHhhHHH---HHHHHhccceeEecC
Q 026753          170 FVDEP-DE-PTGLGGAVIPPGK-GLRSALGLKEGG-------NSNSLVPCLLCLLTFS---VYEFIMSDAVFIKLG  232 (233)
Q Consensus       170 ~v~~~-~e-p~g~~~~~ipP~k-g~~~~lGl~~fg-------~~aEL~NGRlAMLGfa---li~~i~g~a~~~~~~  232 (233)
                      .-.+. .+ ..........|++ +| +++|+....       +.+|++|||+||+||.   +.+.+.|.++.-+|.
T Consensus       177 ~g~~p~f~~~~~~~~d~~~PG~~~f-DPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~  251 (269)
T 2wsc_2          177 VNTDPIFPNNKLTGTDVGYPGGLWF-DPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF  251 (269)
T ss_dssp             CSSSCCSSSCCSSTTSCSCTTCSSC-CCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred             cccccccccccccccccCCCCCccc-CccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            00000 00 0000111223443 35 568875221       4899999999999954   666688877766654

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=99.33  E-value=1.7e-14  Score=129.86  Aligned_cols=132  Identities=20%  Similarity=0.281  Sum_probs=70.2

Q ss_pred             CCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHh------hhcc----cCCCccchhhHHHHHHHHHHHHHhhccCCC-
Q 026753           99 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ------LNLE----TGIPIYEAEPLLLFFILFTLLGAIGALGDR-  167 (233)
Q Consensus        99 Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Q------l~~~----~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~-  167 (233)
                      .|.+++|++|||+||+|+++.++.|++++.|++.+      ....    .|...++..+..++.+.+.+++.+...-.+ 
T Consensus        97 ~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~  176 (276)
T 2wsc_3           97 KWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQD  176 (276)
T ss_dssp             THHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTG
T ss_pred             HHHHHHHhhcccchhhhHHHHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhcc
Confidence            78899999999999999999999999999987621      1100    122222222211222222334444321101 


Q ss_pred             ----CccccCC----CCCCCCCCcccCCCC-CcccccCcCCC------CCccccchhhHHhhHHH--HHH-HHhccceeE
Q 026753          168 ----GKFVDEP----DEPTGLGGAVIPPGK-GLRSALGLKEG------GNSNSLVPCLLCLLTFS--VYE-FIMSDAVFI  229 (233)
Q Consensus       168 ----G~~v~~~----~ep~g~~~~~ipP~k-g~~~~lGl~~f------g~~aEL~NGRlAMLGfa--li~-~i~g~a~~~  229 (233)
                          |..-.+.    ++.........+|++ +| +++|+...      -+.+|++|||+||+|+.  ++. .+.|.++.-
T Consensus       177 ~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~f-DPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~  255 (276)
T 2wsc_3          177 WAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFF-NPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQ  255 (276)
T ss_dssp             GGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSC-CCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSC
T ss_pred             cccCCcccccccccccccccccccccCCCcccc-cchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHH
Confidence                1000000    000000111234554 35 56887531      24899999999999964  333 466666655


Q ss_pred             ec
Q 026753          230 KL  231 (233)
Q Consensus       230 ~~  231 (233)
                      +|
T Consensus       256 ~l  257 (276)
T 2wsc_3          256 NL  257 (276)
T ss_dssp             C-
T ss_pred             HH
Confidence            44

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=99.29  E-value=1.1e-13  Score=122.99  Aligned_cols=132  Identities=24%  Similarity=0.279  Sum_probs=72.2

Q ss_pred             ccCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhh-hcccCCCccchhh-HHHHHHHHHHHHHhhcc-----CCCCc
Q 026753           97 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL-NLETGIPIYEAEP-LLLFFILFTLLGAIGAL-----GDRGK  169 (233)
Q Consensus        97 ~~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql-~~~~G~p~~~~~p-~ll~~i~ftL~AAI~pL-----~~~G~  169 (233)
                      .+.|.+++|++|||+||+|+++.++.|++++.|++..- -...|...+...+ .+..+.+ .+++.+...     -..|.
T Consensus        87 ~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~~~~~~~~~~l~~~qi-~liG~~E~~r~~~~~~pG~  165 (251)
T 2wsc_4           87 NLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEF-ILSHYVEIRRWQDIKNPGS  165 (251)
T ss_dssp             CTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCSSSCSSCSSCTTTTHH-HHHHTTTHHHHHHHSSCCC
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccccchHhhhccchHHHHHHH-HHHHHHHHHHhhcccCCCc
Confidence            47788999999999999999999999999999887411 0112333222221 1111111 123333210     00011


Q ss_pred             cccCC-CCCCC-CCCcccCCCCCcccccCcCCCC--CccccchhhHHhhHHH--HH-HHHhccceeEec
Q 026753          170 FVDEP-DEPTG-LGGAVIPPGKGLRSALGLKEGG--NSNSLVPCLLCLLTFS--VY-EFIMSDAVFIKL  231 (233)
Q Consensus       170 ~v~~~-~ep~g-~~~~~ipP~kg~~~~lGl~~fg--~~aEL~NGRlAMLGfa--li-~~i~g~a~~~~~  231 (233)
                      .-.+. .+... ......+|+.-| ++||+.++.  +.+||.|||| |+|+.  ++ +.+.|.+++-||
T Consensus       166 ~g~~p~f~~~~~~~~d~~yPGg~F-DPLgl~~~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL  232 (251)
T 2wsc_4          166 VNQDPIFKQYSLPAGEVGYPGGIF-NPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNL  232 (251)
T ss_dssp             TTCCSSSCSSSSCCHHHHSSCCTT-CCCCCCSSSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCT
T ss_pred             ccccccccccccccccccCCCCcc-CccchhHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHH
Confidence            10000 00000 001123455444 568875433  5899999999 99954  44 447777777665

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=99.24  E-value=5.5e-12  Score=112.01  Aligned_cols=119  Identities=23%  Similarity=0.265  Sum_probs=66.0

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHH---h-hh---cccCCCccchhhHHHHHHHHHHHHHhhccCCCCcc
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA---Q-LN---LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF  170 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~---Q-l~---~~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~G~~  170 (233)
                      +.|.+++|++|||+||+|+++.++.|+.+|.....   + +.   ...|.|.-..-+.++ .+-+.+.+.+..     ..
T Consensus        89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~-~~qv~lmG~~E~-----~R  162 (243)
T 3pl9_A           89 LQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLI-WIEVLVIGYIEF-----QR  162 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHH-HHHHHHHHHHHH-----HH
T ss_pred             hHHHHHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHH-HHHHHHHHHHHH-----Hh
Confidence            45678999999999999999999999997632110   0 00   011222211111122 222234444432     11


Q ss_pred             ccCCCCCCCCCCcccCCCCCcccccCcCCCC------CccccchhhHHhhHHH---HHHHHhcccee
Q 026753          171 VDEPDEPTGLGGAVIPPGKGLRSALGLKEGG------NSNSLVPCLLCLLTFS---VYEFIMSDAVF  228 (233)
Q Consensus       171 v~~~~ep~g~~~~~ipP~kg~~~~lGl~~fg------~~aEL~NGRlAMLGfa---li~~i~g~a~~  228 (233)
                      ..+. ++.    ....|+.-| ++||+....      +.+|+.|||+||+|+.   +.+.+.|.+..
T Consensus       163 ~~~~-~~~----~~~~PG~~F-DPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl  223 (243)
T 3pl9_A          163 NAEL-DTE----KRLYPGGTF-DPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL  223 (243)
T ss_dssp             HSCC-CTT----TTTCCCGGG-CTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred             hccc-CCc----cccCCCcch-hhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence            1111 011    113455444 578886311      2799999999999964   44456776654

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=99.20  E-value=4.1e-12  Score=111.50  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=27.7

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHhhChh
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKG  129 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~g  129 (233)
                      +.|.+++|+.|||+||+|+++.++.|+++..|
T Consensus        58 ~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G   89 (232)
T 2bhw_A           58 FSKNRELEVIHSRWAMLGALGSVFPELLSRNG   89 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence            44567899999999999999999999987544

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=99.17  E-value=3e-12  Score=113.27  Aligned_cols=124  Identities=19%  Similarity=0.187  Sum_probs=66.1

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHh--h-hcccCC------CccchhhHHHHHHHHHHHHHhhccCCCC
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ--L-NLETGI------PIYEAEPLLLFFILFTLLGAIGALGDRG  168 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Q--l-~~~~G~------p~~~~~p~ll~~i~ftL~AAI~pL~~~G  168 (233)
                      +.+.+++|+.|||+||+++++.++.|+++..++.+.  + ....|.      |+.+.....++.+-+.+++.+...    
T Consensus        80 ~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~----  155 (241)
T 2wsc_1           80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQ----  155 (241)
T ss_dssp             HHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHH----
T ss_pred             HHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHH----
Confidence            455678999999999999999999998654222210  1 111122      221111112222223333444321    


Q ss_pred             ccccCCCCCCCCCCcccCCCCCcccccCcCC----C--CCccccchhhHHhhHHH--HHHH--HhccceeEecC
Q 026753          169 KFVDEPDEPTGLGGAVIPPGKGLRSALGLKE----G--GNSNSLVPCLLCLLTFS--VYEF--IMSDAVFIKLG  232 (233)
Q Consensus       169 ~~v~~~~ep~g~~~~~ipP~kg~~~~lGl~~----f--g~~aEL~NGRlAMLGfa--li~~--i~g~a~~~~~~  232 (233)
                       ...+. ++.+   . .+|+++| +++|+..    +  -+.+|++|||+||+|+.  ++.+  +.|.++.-+|+
T Consensus       156 -r~~~~-~~~~---~-~yPgg~f-DPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~  222 (241)
T 2wsc_1          156 -RSMEK-DPEK---K-KYPGGAF-DPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA  222 (241)
T ss_dssp             -HTSCC-SSCC---S-SSCSCCS-CSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSS
T ss_pred             -HHhcc-CCCC---C-CCCCCcc-cccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence             11111 1111   1 2455455 4677752    1  14799999999999975  4544  56777765554

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=98.21  E-value=5.1e-07  Score=79.22  Aligned_cols=42  Identities=33%  Similarity=0.399  Sum_probs=35.7

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCc
Q 026753          101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI  142 (233)
Q Consensus       101 t~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~  142 (233)
                      .+.+|+.|||+||+|+++.++.|.+||+|+++|+.....-|+
T Consensus       176 ~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~  217 (232)
T 2bhw_A          176 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV  217 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTT
T ss_pred             HHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChH
Confidence            357899999999999999999999999999999864444443

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.12  E-value=1.3e-06  Score=77.71  Aligned_cols=37  Identities=30%  Similarity=0.425  Sum_probs=33.8

Q ss_pred             CcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhc
Q 026753          100 FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL  136 (233)
Q Consensus       100 ft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~  136 (233)
                      +.+.+|+.|||+||+|+++.++.|++||+|+++|+..
T Consensus       192 ~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~  228 (243)
T 3pl9_A          192 ILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVT  228 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            3467999999999999999999999999999999864

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=97.96  E-value=7.5e-07  Score=79.99  Aligned_cols=38  Identities=24%  Similarity=0.326  Sum_probs=34.7

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhh
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN  135 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~  135 (233)
                      +.+.+.+|+.|||+||+||++.++.|.+||+|+++|+.
T Consensus       214 ~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~  251 (269)
T 2wsc_2          214 LKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF  251 (269)
T ss_dssp             CTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred             HHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            44557899999999999999999999999999999886

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=97.90  E-value=1.3e-06  Score=78.79  Aligned_cols=44  Identities=25%  Similarity=0.237  Sum_probs=31.1

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCC
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP  141 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p  141 (233)
                      +...+.+|+.|||+||+|+++.++.|++||+|+++|+..-..-|
T Consensus       221 ~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP  264 (276)
T 2wsc_3          221 LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDP  264 (276)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--------
T ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCc
Confidence            33457889999999999999999999999999999986443334

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=97.78  E-value=3.5e-06  Score=74.56  Aligned_cols=45  Identities=24%  Similarity=0.324  Sum_probs=37.5

Q ss_pred             CcchhhhhhhHHHHHHHHHHHHHH-HhhChhhHHhhhcccCCCccc
Q 026753          100 FTKQNELFVGRVAMIGFAASLLGE-GITGKGILAQLNLETGIPIYE  144 (233)
Q Consensus       100 ft~~aEl~NGRlAMlGf~a~l~~E-~~TG~giL~Ql~~~~G~p~~~  144 (233)
                      ..+.+|+.|||+||+|+++.++.| ++||+|+++|+.....-|+..
T Consensus       186 ~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~  231 (241)
T 2wsc_1          186 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN  231 (241)
T ss_dssp             CSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC-
T ss_pred             HHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCcccc
Confidence            346789999999999999999999 589999999998655556553

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=97.47  E-value=1.8e-05  Score=70.33  Aligned_cols=41  Identities=29%  Similarity=0.476  Sum_probs=35.2

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCcc
Q 026753          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY  143 (233)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~~  143 (233)
                      +..|+.|||+ |+|+++.+++|.+||+|+++++..-..-|+.
T Consensus       201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~  241 (251)
T 2wsc_4          201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWH  241 (251)
T ss_dssp             TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCC
T ss_pred             HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhh
Confidence            6789999999 9999999999999999999988754444543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	99.34
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	98.39

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.34  E-value=1.7e-13  Score=115.87  Aligned_cols=31  Identities=23%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHhhCh
Q 026753           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGK  128 (233)
Q Consensus        98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~  128 (233)
                      +-|.+++|+.|||+||+++++.++.|+.+..
T Consensus        45 ~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~   75 (218)
T d1rwta_          45 FAKNRELEVIHCRWAMLGALGCVFPELLARN   75 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhceehHhhhcceeehhhhccC
Confidence            5667899999999999999999999997644

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.39  E-value=5.7e-08  Score=81.46  Aligned_cols=39  Identities=31%  Similarity=0.376  Sum_probs=33.9

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCC
Q 026753          103 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP  141 (233)
Q Consensus       103 ~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p  141 (233)
                      .+|+.|||+||||+++.+++|++||+|+++||..-..-|
T Consensus       165 ~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P  203 (218)
T d1rwta_         165 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP  203 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCT
T ss_pred             HHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCc
Confidence            489999999999999999999999999999986433334