Citrus Sinensis ID: 026764

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKPPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEcccEEEEEEEccccEEEEEcccEEccccEEEEccccEEEccEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHcccccHccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccccccccccccccccHHHHccccccEEEEEEcccccccEEEEEEEccccEEEEEccEEEcccccEEcccEEEEEEEEEEEccccccccccHHHHHHHHHHcccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHEEccccccccEccc
Coil and Loop (DISEMBL)
mapkaatgrtsrnpdlirgvgkfsrskmyhkRGLWAIKaknggvfpkhdpkpaaaetpakppkfypaddvkkplvnkrkhkptklrasitpGTVFILLAGRFMGKRVVFLKQLTSglllvtgpfkvngvplrrvnqSYVIATStkvdisgvdlgkfddQYFEKEAEKKKKKGEGEFFEAEKEekkvlpddkkddqKTVDAQLIKSIEAVLDLKTYLSARFSlksgmkphelvf
Flexible Loop (DISEMBL)
mapkaatgrtsrnpdlirgvgkfsrskmyhkRGLWAIKAKNGGVFPKHDPKPAAAetpakppkfypaddvkkplvnkrkhkptklrasitpgTVFILLAGRFMGKRVVFLKQLTSGLllvtgpfkvngvplrrvnQSYVIAtstkvdisgvdlgKFDDQYFEKEAEkkkkkgegeffeaekeekkvlpddkkddqkTVDAQLIKSIEAVLDLKTYLSarfslksgmkphelvf
Low Complexity Region (SEG)
MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDpkpaaaetpakppkFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFekeaekkkkkgegeffeaekeekkVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF
Disordered region (IsUnstruct)
*******************VGKFSRSKMYHKRGLWAIKAKNGGV******************************************ASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQY***************************************AQLIKSIEAVLDLKTYLSARF*************
Disordered Region (DISOPRED)
************NPDLIRGVGKFSRSKMYHKRGLWAI**************************FY*********************ASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDD************************************QKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF
Disordered Region (DISEMBL)
***********RNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKPPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF
Disordered Region (DISPRO)
**********SRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVF******PAAAETPAKPPKFYPADDV*************KLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKK******EFFE*EKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKPPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
P34091	234	60S ribosomal protein L6	N/A	no	0.961	0.957	0.808	2e-96
Q9C9C5	233	60S ribosomal protein L6-	yes	no	1.0	1.0	0.789	2e-88
Q9C9C6	233	60S ribosomal protein L6-	yes	no	1.0	1.0	0.785	2e-88
Q9FZ76	233	60S ribosomal protein L6-	no	no	0.974	0.974	0.788	9e-85
Q2YGT9	284	60S ribosomal protein L6	yes	no	0.952	0.781	0.453	3e-50
Q6QMZ4	288	60S ribosomal protein L6	N/A	no	0.952	0.770	0.461	9e-50
Q58DQ3	287	60S ribosomal protein L6	yes	no	0.952	0.773	0.449	2e-49
P21533	298	60S ribosomal protein L6	yes	no	0.914	0.714	0.451	7e-49
P47911	296	60S ribosomal protein L6	yes	no	0.914	0.719	0.451	8e-49
Q02878	288	60S ribosomal protein L6	yes	no	0.952	0.770	0.449	1e-48

>sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1

 Score =  351 bits (901), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 181/224 (80%), Positives = 201/224 (89%)

Query: 10  TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKPPKFYPADD 69
            SRNP+L+RG+GK+SRSKMYHKRGLWAIKAKNGGVFPKH PK A ++   KPPKFYPADD
Sbjct: 11  VSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADD 70

Query: 70  VKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGV 129
           VKKPL+NKRK KPTKLRASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFKVNGV
Sbjct: 71  VKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGV 130

Query: 130 PLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPD 189
           PLRRVNQ+YVIATSTKVDISGV++ KFDD+YF K+AEKK KKGEGEFFEAEK+E  VLP 
Sbjct: 131 PLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQ 190

Query: 190 DKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           +KKDDQK VD  L+K+IE V +LK YL ARFSLK+GMKPHELVF
Sbjct: 191 EKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234

Mesembryanthemum crystallinum (taxid: 3544)

>sp|Q9C9C5|RL63_ARATH 60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2 SV=1

 Score =  325 bits (832), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 184/233 (78%), Positives = 198/233 (84%)

Query: 1   MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK 60
           M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD K        K
Sbjct: 1   MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60

Query: 61  PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
           PPKFYPA+DVKKPL N+R  KPTKLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLV
Sbjct: 61  PPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120

Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE 180
           TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF K AEKKKKK EGEFFEAE
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180

Query: 181 KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           KEEKK +P  KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct: 181 KEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9C6|RL62_ARATH 60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1

 Score =  325 bits (832), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 183/233 (78%), Positives = 197/233 (84%)

Query: 1   MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK 60
           M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD K        K
Sbjct: 1   MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60

Query: 61  PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
           PPKFYPA+DVKKPL N+R  KP KLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLV
Sbjct: 61  PPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120

Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE 180
           TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF K AEKKKKK EGEFFEAE
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180

Query: 181 KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           KEEKK +P  KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct: 181 KEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ76|RL61_ARATH 60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1

 Score =  313 bits (801), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 179/227 (78%), Positives = 199/227 (87%)

Query: 7   TGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKPPKFYP 66
           T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD +P       KP KFYP
Sbjct: 7   TPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYP 66

Query: 67  ADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKV 126
           A+DVKKPLVN+RK KPTKL+ASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFK+
Sbjct: 67  AEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKI 126

Query: 127 NGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKV 186
           NGVPLRRVNQ+YVI TSTK+DISGV+  KFDD+YF K AEKKKKK EGEFFEAEKEEKK 
Sbjct: 127 NGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKE 186

Query: 187 LPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           +P +KK+DQKTVDA LIKSIEAV +LK YL ARFSL  GMKPHELVF
Sbjct: 187 IPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

Arabidopsis thaliana (taxid: 3702)

>sp|Q2YGT9|RL6_PIG 60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 112/247 (45%), Positives = 157/247 (63%), Gaps = 25/247 (10%)

Query: 10  TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKP-------- 61
            SRNP L+RG+G++SRS MY ++ L+  K        +   K     T  KP        
Sbjct: 40  CSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGG 99

Query: 62  ---------PKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRV 107
                    P++YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRV
Sbjct: 100 TRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRV 158

Query: 108 VFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFEKEAE 166
           +FLKQL+SGLLLVTGP  +N VPLRR +Q +VIATSTK+DISGV + +   D YF+K+  
Sbjct: 159 IFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKL 218

Query: 167 KKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGM 226
           +K +  EGE F+ EKE+ ++  + +K DQK VD+Q+++ I+AV  L+ YL + F+L +G+
Sbjct: 219 RKPRHQEGEIFDTEKEKYEI-SEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 277

Query: 227 KPHELVF 233
            PH+LVF
Sbjct: 278 YPHKLVF 284

Sus scrofa (taxid: 9823)

>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3

 Score =  196 bits (499), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 114/247 (46%), Positives = 153/247 (61%), Gaps = 25/247 (10%)

Query: 10  TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKP-------- 61
            SRNP L+RG+G++SRS MY ++ L+  K        +   K     T  KP        
Sbjct: 44  CSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGG 103

Query: 62  ---------PKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRV 107
                    P++YP +DV + L++  K KP      KLRASITPGTV I+L GR  GKRV
Sbjct: 104 TRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRV 162

Query: 108 VFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFEKEAE 166
           VFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK+DIS V + K   D YF+K+  
Sbjct: 163 VFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKL 222

Query: 167 KKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGM 226
           +K +  EGE F+ EKE  ++  + +K DQK VD+Q++  I+AV  L+ YL + F+L +G+
Sbjct: 223 RKPRHQEGEIFDTEKERYQI-SEQRKVDQKAVDSQILPKIKAVPQLRGYLRSVFALTNGI 281

Query: 227 KPHELVF 233
            PH+LVF
Sbjct: 282 YPHKLVF 288

Chinchilla lanigera (taxid: 34839)

>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 111/247 (44%), Positives = 156/247 (63%), Gaps = 25/247 (10%)

Query: 10  TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKP-------- 61
            SRNP L+RG+G++SRS MY ++ L+  K        +   K     T  KP        
Sbjct: 43  CSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGG 102

Query: 62  ---------PKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRV 107
                    P++YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRV
Sbjct: 103 TRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRV 161

Query: 108 VFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFEKEAE 166
           VFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK+DISGV + +   D YF+K+  
Sbjct: 162 VFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKL 221

Query: 167 KKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGM 226
           +K +  EGE F+ E+E+ ++  + +K DQK VD+Q+++ I+AV  L+ YL + F+L +G+
Sbjct: 222 RKPRHQEGEIFDTEREKYEIT-EQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 280

Query: 227 KPHELVF 233
            PH++VF
Sbjct: 281 YPHKVVF 287

Bos taurus (taxid: 9913)

>sp|P21533|RL6_RAT 60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5

 Score =  193 bits (491), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 116/257 (45%), Positives = 155/257 (60%), Gaps = 44/257 (17%)

Query: 10  TSRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNG 42
            SRNP L+RG+G++SRS MY ++ L+  K                            KNG
Sbjct: 53  CSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNG 112

Query: 43  GVFPKHDPKPAAAETPAKPPKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFIL 97
           G                K P++YP +DV + L++  K KP      +LR+SITPGTV I+
Sbjct: 113 GT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLII 162

Query: 98  LAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-F 156
           L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTKVDIS V + K  
Sbjct: 163 LTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHL 222

Query: 157 DDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYL 216
            D YF+K+  +K +  EGE F+ EKE+ ++  + +K DQK VD+Q++  I+AV  L+ YL
Sbjct: 223 TDAYFKKKPLRKPRHQEGEIFDTEKEKYEIT-EQRKADQKAVDSQILPKIKAVPQLQGYL 281

Query: 217 SARFSLKSGMKPHELVF 233
            ++FSL +GM PH+LVF
Sbjct: 282 RSQFSLTNGMYPHKLVF 298

Rattus norvegicus (taxid: 10116)

>sp|P47911|RL6_MOUSE 60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3

 Score =  193 bits (491), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 116/257 (45%), Positives = 154/257 (59%), Gaps = 44/257 (17%)

Query: 10  TSRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNG 42
            SRNP L+RG+G++SRS MY ++ L+  K                            KNG
Sbjct: 51  CSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNG 110

Query: 43  GVFPKHDPKPAAAETPAKPPKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFIL 97
           G                K P++YP +DV + L++  K KP      +LR+SITPGTV I+
Sbjct: 111 G---------TRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLII 160

Query: 98  LAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-F 156
           L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTKVDIS V + K  
Sbjct: 161 LTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHL 220

Query: 157 DDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYL 216
            D YF+K+  +K +  EGE F+ EKE+ ++  + +K DQK VD Q++  I+AV  L+ YL
Sbjct: 221 TDAYFKKKQLRKPRHQEGEIFDTEKEKYEIT-EQRKADQKAVDLQILPKIKAVPQLQGYL 279

Query: 217 SARFSLKSGMKPHELVF 233
            ++FSL +GM PH+LVF
Sbjct: 280 RSQFSLTNGMYPHKLVF 296

Mus musculus (taxid: 10090)

>sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/247 (44%), Positives = 154/247 (62%), Gaps = 25/247 (10%)

Query: 10  TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKP-------- 61
            SRNP L+RG+G++SRS MY ++ ++  K        +   K     T  KP        
Sbjct: 44  CSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGG 103

Query: 62  ---------PKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRV 107
                    P++YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRV
Sbjct: 104 TRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRV 162

Query: 108 VFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFEKEAE 166
           VFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK+DIS V + K   D YF+K+  
Sbjct: 163 VFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKL 222

Query: 167 KKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGM 226
           +K +  EGE F+ EKE+ ++  + +K DQK VD+Q++  I+A+  L+ YL + F+L +G+
Sbjct: 223 RKPRHQEGEIFDTEKEKYEIT-EQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGI 281

Query: 227 KPHELVF 233
            PH+LVF
Sbjct: 282 YPHKLVF 288

Specifically binds to domain C of the Tax-responsive enhancer element in the long terminal repeat of HTLV-I.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
357464405	233	60S ribosomal protein L6 [Medicago trunc	1.0	1.0	0.785	1e-100
217071500	234	unknown [Medicago truncatula]	1.0	0.995	0.786	3e-99
357464351	233	60S ribosomal protein L6 [Medicago trunc	1.0	1.0	0.776	3e-99
255544260	233	60S ribosomal protein L6, putative [Rici	1.0	1.0	0.824	2e-98
388519729	234	unknown [Medicago truncatula]	1.0	0.995	0.782	2e-98
161377377	233	60S ribosomal protein L6-like protein [P	1.0	1.0	0.836	1e-97
255567646	231	60S ribosomal protein L6, putative [Rici	0.991	1.0	0.824	5e-97
357495459	234	60S ribosomal protein L6 [Medicago trunc	1.0	0.995	0.773	1e-96
7208784	233	60S ribosomal protein L6 [Cicer arietinu	1.0	1.0	0.759	1e-96
449476360	231	PREDICTED: 60S ribosomal protein L6-like	0.991	1.0	0.819	2e-95

>gi|357464405|ref|XP_003602484.1| 60S ribosomal protein L6 [Medicago truncatula] gi|217071394|gb|ACJ84057.1| unknown [Medicago truncatula] gi|217071824|gb|ACJ84272.1| unknown [Medicago truncatula] gi|355491532|gb|AES72735.1| 60S ribosomal protein L6 [Medicago truncatula] gi|388498428|gb|AFK37280.1| unknown [Medicago truncatula]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/233 (78%), Positives = 203/233 (87%)

Query: 1   MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK 60
           MAPK  T R SRNP+LIRG+GK+SRS MYHKRGLWAIKAK+GG FP+HDP    A    K
Sbjct: 1   MAPKTRTARVSRNPELIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPVEK 60

Query: 61  PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
           PPKFYPADDVKKPL NK K KPTKLRASITPGTV ILLAGRF GKRVVFLKQL SGLLLV
Sbjct: 61  PPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLV 120

Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE 180
           TGPFK+NGVPLRRVNQ+YVI TSTKVDIS V+  KFDD+YF KE++KK KKGEGEFFEA+
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISSVNADKFDDKYFSKESQKKTKKGEGEFFEAD 180

Query: 181 KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           KE+KKVLP +KKDDQKTVDA L+K+I++V DLKTYL ARFSLK+G+KPHELVF
Sbjct: 181 KEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHELVF 233

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071500|gb|ACJ84110.1| unknown [Medicago truncatula]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 184/234 (78%), Positives = 201/234 (85%), Gaps = 1/234 (0%)

Query: 1   MAP-KAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPA 59
           MAP K    R SRNPDLIRG+GKFS+S+MYHK+G+WAIKAKNGGVFP+HDPKP       
Sbjct: 1   MAPTKERAPRVSRNPDLIRGIGKFSKSQMYHKKGIWAIKAKNGGVFPRHDPKPKPETAAE 60

Query: 60  KPPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLL 119
           KPPKFYPADDVKKPL NK K K TKLRASITPGTV ILLAGRF GKRVVFLKQL SGLLL
Sbjct: 61  KPPKFYPADDVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLL 120

Query: 120 VTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEA 179
           VTGPFK+NGVPLRRVNQ+YVI TSTKVDISGV++   DD+YF KEA KKK KGEGEFFE+
Sbjct: 121 VTGPFKINGVPLRRVNQAYVIGTSTKVDISGVNVDNLDDKYFSKEAPKKKSKGEGEFFES 180

Query: 180 EKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           +KEEKK LP  KKDDQKTVDA LIK+IE+V DLKTYL ARFSLK+G+KPHELVF
Sbjct: 181 DKEEKKALPQQKKDDQKTVDAALIKAIESVPDLKTYLGARFSLKAGVKPHELVF 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464351|ref|XP_003602457.1| 60S ribosomal protein L6 [Medicago truncatula] gi|355491505|gb|AES72708.1| 60S ribosomal protein L6 [Medicago truncatula]

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/233 (77%), Positives = 203/233 (87%)

Query: 1   MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK 60
           MAPK  T R SRNP+LIRG+GK+SRS MYHKRGLWAIKAK+GG FP+HDP    A    K
Sbjct: 1   MAPKQRTARVSRNPELIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPVEK 60

Query: 61  PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
           PPKFYPADDVKKPL NK + KPTKLRASITPGTV ILLAGRF GKRVVFLKQL SGLLLV
Sbjct: 61  PPKFYPADDVKKPLRNKHRPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLV 120

Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE 180
           TGPFK+NGVPLRRVNQ+YVI TSTKVDIS V++ KFDD+YF KE++KK KKGE EFFEA+
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESQKKTKKGESEFFEAD 180

Query: 181 KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           KE+KKVLP +KKDDQKTVDA L+K+I++V DLKTYL ARFSLK+G+KPHELVF
Sbjct: 181 KEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHELVF 233

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544260|ref|XP_002513192.1| 60S ribosomal protein L6, putative [Ricinus communis] gi|223547690|gb|EEF49183.1| 60S ribosomal protein L6, putative [Ricinus communis]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/233 (82%), Positives = 213/233 (91%)

Query: 1   MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK 60
           MAPK  T + +RNPDL+RG+GK+SRS+MYHKRGLWAIKAKNGGVFPKHDPKP  A    K
Sbjct: 1   MAPKTRTPKVNRNPDLVRGIGKYSRSQMYHKRGLWAIKAKNGGVFPKHDPKPKPAAPAEK 60

Query: 61  PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
           PPKFYPADDVKKPL+NKRK KPTKLRASITPGTV I+LAGRF GKRVVFLKQL+SGLLL+
Sbjct: 61  PPKFYPADDVKKPLLNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLI 120

Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE 180
           TGPFK+NGVPLRRVNQSYVIATSTKVDISGV++ KFDD++F K+AEKKKKKGEGEFFEAE
Sbjct: 121 TGPFKINGVPLRRVNQSYVIATSTKVDISGVNVDKFDDKFFAKQAEKKKKKGEGEFFEAE 180

Query: 181 KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           K+EK VLP +KKDDQKTVDA LIKSIEAV +LK YL+ARFSLK+GMKPHELVF
Sbjct: 181 KDEKNVLPQEKKDDQKTVDAALIKSIEAVPELKAYLAARFSLKAGMKPHELVF 233

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519729|gb|AFK47926.1| unknown [Medicago truncatula]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/234 (78%), Positives = 200/234 (85%), Gaps = 1/234 (0%)

Query: 1   MAP-KAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPA 59
           MAP K    R SRNPDLIRG+GKFS+S+MYHK+G+WAIKAKNGGVFP+HDPKP       
Sbjct: 1   MAPTKERAPRVSRNPDLIRGIGKFSKSQMYHKKGIWAIKAKNGGVFPRHDPKPKPETAAE 60

Query: 60  KPPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLL 119
           KPPKFYPADDVKKPL NK K K TKLRASITPGTV ILLAGRF GKRVVFLKQL SGLLL
Sbjct: 61  KPPKFYPADDVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLL 120

Query: 120 VTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEA 179
           VTGPFK+NGVPLRRVNQ+YVI TSTKVDISGV++   DD+YF KEA KKK KGEGEFF +
Sbjct: 121 VTGPFKINGVPLRRVNQAYVIGTSTKVDISGVNVDNLDDKYFSKEAPKKKSKGEGEFFGS 180

Query: 180 EKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           +KEEKK LP  KKDDQKTVDA LIK+IE+V DLKTYL ARFSLK+G+KPHELVF
Sbjct: 181 DKEEKKALPQQKKDDQKTVDAALIKAIESVPDLKTYLGARFSLKAGVKPHELVF 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|161377377|gb|ABX71676.1| 60S ribosomal protein L6-like protein [Panax quinquefolius]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 195/233 (83%), Positives = 210/233 (90%)

Query: 1   MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK 60
           MAPK+   +T+RNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFP+H  KPAA E   K
Sbjct: 1   MAPKSGKAKTTRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPRHGSKPAALEAVVK 60

Query: 61  PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
           PPKFYPADDVKKPLVNKRK KPTKLRASITPGTV I+LAGRF GKRVVFLKQLTSGLLL+
Sbjct: 61  PPKFYPADDVKKPLVNKRKEKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLTSGLLLI 120

Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE 180
           TGPFK+NGVPLRRVNQSYVIATSTKVD+SGV++ K+DD+YF KE EKKKKKGEGEFFEAE
Sbjct: 121 TGPFKINGVPLRRVNQSYVIATSTKVDVSGVNVEKYDDKYFAKEVEKKKKKGEGEFFEAE 180

Query: 181 KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           K+EKK LP  KKDDQ+ VDA L+KSIE V DLKTYLSARFSL SGMKPHELVF
Sbjct: 181 KDEKKALPQVKKDDQQAVDAILLKSIEGVPDLKTYLSARFSLLSGMKPHELVF 233

Source: Panax quinquefolius

Species: Panax quinquefolius

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567646|ref|XP_002524802.1| 60S ribosomal protein L6, putative [Ricinus communis] gi|223535986|gb|EEF37645.1| 60S ribosomal protein L6, putative [Ricinus communis]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 192/233 (82%), Positives = 210/233 (90%), Gaps = 2/233 (0%)

Query: 1   MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK 60
           MAPK  T R SRNP+L+RG+GK+SRS+MYHKRGLWAIKAKNGGVFPKHDPKP  A    K
Sbjct: 1   MAPK--TPRISRNPNLVRGIGKYSRSQMYHKRGLWAIKAKNGGVFPKHDPKPKPASPAEK 58

Query: 61  PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
           PPKFYPADD+KKPL NKRK KPTKLRASITPGTV I+LAGRF GKRVVFLKQL+SGLLLV
Sbjct: 59  PPKFYPADDIKKPLHNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLV 118

Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE 180
           TGPFK+NGVPLRRVNQSYVIATSTKVDISGV+  KFDD+YF K+AEK+KKKGEGEFFEAE
Sbjct: 119 TGPFKINGVPLRRVNQSYVIATSTKVDISGVNADKFDDKYFAKQAEKRKKKGEGEFFEAE 178

Query: 181 KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           KEEK VLP +KKDDQKT+DA LIKSIE V +LK YL+ARFSLK+GMKPHELVF
Sbjct: 179 KEEKNVLPQEKKDDQKTLDAALIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495459|ref|XP_003618018.1| 60S ribosomal protein L6 [Medicago truncatula] gi|355519353|gb|AET00977.1| 60S ribosomal protein L6 [Medicago truncatula]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 181/234 (77%), Positives = 197/234 (84%), Gaps = 1/234 (0%)

Query: 1   MAP-KAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPA 59
           MAP K    R SRN DLIRG+GKFS+S+MYHK+G+W IKAKNGGVFP HDPKP       
Sbjct: 1   MAPTKERASRVSRNSDLIRGIGKFSKSQMYHKKGIWVIKAKNGGVFPHHDPKPKPETAVE 60

Query: 60  KPPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLL 119
           KPPKFYPADDVKKPL NK K K TKLRASITPGTV ILLAGRF GKRVVFLKQL SGLLL
Sbjct: 61  KPPKFYPADDVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLL 120

Query: 120 VTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEA 179
           VTGPFK+NGVPLR VNQ+YVI TSTKVDISGV++   DD+YF KEA KKK KGEGEFFE 
Sbjct: 121 VTGPFKINGVPLRCVNQAYVIGTSTKVDISGVNVDNLDDKYFSKEAPKKKSKGEGEFFEL 180

Query: 180 EKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           +KEEKKVLP  KKDDQKTVDA LIK+I++V DLKTYL ARFSLK+G+KPHELVF
Sbjct: 181 DKEEKKVLPQQKKDDQKTVDAALIKAIDSVPDLKTYLGARFSLKAGVKPHELVF 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7208784|emb|CAB76914.1| 60S ribosomal protein L6 [Cicer arietinum]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 177/233 (75%), Positives = 197/233 (84%)

Query: 1   MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK 60
           MAPK  T R SRNPDLIRG+GK+S+S MYHKRGLWAIKAK+GG FPKHDPKP       K
Sbjct: 1   MAPKQRTARVSRNPDLIRGIGKYSKSAMYHKRGLWAIKAKHGGAFPKHDPKPKPEAPAEK 60

Query: 61  PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
            PKFYPA DV+KPL NK K KPTKLRA+ITPGTV ILLAGRF GKRVVFLKQL SGLL  
Sbjct: 61  APKFYPAHDVQKPLRNKHKPKPTKLRANITPGTVLILLAGRFKGKRVVFLKQLPSGLLTC 120

Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE 180
           +GPFK+NGVPLRRVNQSYVI TSTKVD+S V++ KFDD+YF K AEKK  KGEGEFF++E
Sbjct: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDVSSVNVDKFDDKYFSKVAEKKTTKGEGEFFDSE 180

Query: 181 KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           KE+KKVLP +KKDDQKTVD+ L+K+IE V DLKT L ARFSLKSG+KPHELVF
Sbjct: 181 KEDKKVLPQEKKDDQKTVDSSLLKAIETVPDLKTNLGARFSLKSGVKPHELVF 233

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476360|ref|XP_004154716.1| PREDICTED: 60S ribosomal protein L6-like [Cucumis sativus]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 191/233 (81%), Positives = 206/233 (88%), Gaps = 2/233 (0%)

Query: 1   MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK 60
           MAPK  T R SRNP+LIRGVGK+SRSKMYHKRGLWAIKAKNGGVFP+HD KP A     K
Sbjct: 1   MAPK--TARVSRNPELIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADSPAEK 58

Query: 61  PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
           PPKFYPADDVKKPLVNKRK KPTKLR+SITPGTV I+L GRF GKRVVFLKQL SGLLLV
Sbjct: 59  PPKFYPADDVKKPLVNKRKPKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLV 118

Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE 180
           TGPFKVNGVPLRRVNQSYVIATSTKVDI+GV++ KF D+YF KE  +KKKKGEGEFFEAE
Sbjct: 119 TGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFGDKYFSKEVHQKKKKGEGEFFEAE 178

Query: 181 KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           KEEK  LP +KKDDQK VD+ L+KSIEAV DLKTYL+ARFSLK+GMKPHELVF
Sbjct: 179 KEEKSALPQEKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2031576	233	AT1G74050 [Arabidopsis thalian	1.0	1.0	0.678	7.9e-78
TAIR|locus:2031561	233	AT1G74060 [Arabidopsis thalian	1.0	1.0	0.673	1e-77
TAIR|locus:2027483	233	AT1G18540 [Arabidopsis thalian	0.974	0.974	0.678	1.3e-77
MGI|MGI:108057	296	Rpl6 "ribosomal protein L6" [M	0.721	0.567	0.488	2.2e-42
UNIPROTKB|F1Q424	288	RPL6 "60S ribosomal protein L6	0.721	0.583	0.482	1.2e-41
UNIPROTKB|Q8UWG7	298	RPL6 "60S ribosomal protein L6	0.721	0.563	0.494	2e-41
UNIPROTKB|Q2YGT9	284	RPL6 "60S ribosomal protein L6	0.721	0.591	0.471	2e-41
RGD|619826	298	Rpl6 "ribosomal protein L6" [R	0.721	0.563	0.488	5.2e-41
UNIPROTKB|F1LQS3	298	Rpl6 "60S ribosomal protein L6	0.721	0.563	0.488	5.2e-41
UNIPROTKB|H7C5Y5	297	H7C5Y5 "60S ribosomal protein	0.721	0.565	0.488	5.2e-41

TAIR|locus:2031576 AT1G74050 [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 158/233 (67%), Positives = 172/233 (73%)

Query:     1 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXX 60
             M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD           
Sbjct:     1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60

Query:    61 XXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
                FYPA+DVKKPL N+R  KPTKLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLV
Sbjct:    61 PPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120

Query:   121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXX 180
             TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF                   
Sbjct:   121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180

Query:   181 XXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
                   +P  KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct:   181 KEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2031561 AT1G74060 [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 157/233 (67%), Positives = 171/233 (73%)

Query:     1 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXX 60
             M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD           
Sbjct:     1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60

Query:    61 XXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
                FYPA+DVKKPL N+R  KP KLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLV
Sbjct:    61 PPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120

Query:   121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXX 180
             TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF                   
Sbjct:   121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180

Query:   181 XXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
                   +P  KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct:   181 KEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2027483 AT1G18540 [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 154/227 (67%), Positives = 173/227 (76%)

Query:     7 TGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYP 66
             T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYP
Sbjct:     7 TPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYP 66

Query:    67 ADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKV 126
             A+DVKKPLVN+RK KPTKL+ASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFK+
Sbjct:    67 AEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKI 126

Query:   127 NGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXV 186
             NGVPLRRVNQ+YVI TSTK+DISGV+  KFDD+YF                         
Sbjct:   127 NGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKE 186

Query:   187 LPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
             +P +KK+DQKTVDA LIKSIEAV +LK YL ARFSL  GMKPHELVF
Sbjct:   187 IPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

MGI|MGI:108057 Rpl6 "ribosomal protein L6" [Mus musculus (taxid:10090)]

 Score = 369 (135.0 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 86/176 (48%), Positives = 109/176 (61%)

Query:    64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
             +YP +DV + L++  K KP      +LR+SITPGTV I+L GR  GKRVVFLKQL SGLL
Sbjct:   123 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLL 181

Query:   119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
             LVTGP  +N VPLRR +Q +VIATSTKVDIS V + K   D YF                
Sbjct:   182 LVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIF 241

Query:   178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
                     +  + +K DQK VD Q++  I+AV  L+ YL ++FSL +GM PH+LVF
Sbjct:   242 DTEKEKYEIT-EQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISA

GO:0005730 "nucleolus" evidence=ISA

GO:0005737 "cytoplasm" evidence=ISA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1Q424 RPL6 "60S ribosomal protein L6" [Canis lupus familiaris (taxid:9615)]

 Score = 368 (134.6 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 85/176 (48%), Positives = 110/176 (62%)

Query:    64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
             +YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRVVFLKQL+SGLL
Sbjct:   115 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLL 173

Query:   119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
             LVTGP  +N VPLRR +Q +VIATSTK+DIS V + K   D YF                
Sbjct:   174 LVTGPLALNRVPLRRTHQKFVIATSTKIDISSVKIPKHLTDAYFKKKKLRKPRHQEGEIF 233

Query:   178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
                     +  + +K DQK VD+Q++  I+AV  L+ YL + FSL +G+ PH+LVF
Sbjct:   234 DTEKEKYEIT-EQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFSLTNGVYPHKLVF 288

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q8UWG7 RPL6 "60S ribosomal protein L6" [Gallus gallus (taxid:9031)]

 Score = 373 (136.4 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 87/176 (49%), Positives = 109/176 (61%)

Query:    64 FYPADDVKKPLVNKRK-----HKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
             +YP +DV + L++  K     HK  +LRASITPGTV ILL GR  GKRVVFLKQL +GLL
Sbjct:   125 YYPTEDVPRKLLSHGKKPFSQHK-RRLRASITPGTVLILLTGRHRGKRVVFLKQLGTGLL 183

Query:   119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
             LVTGP  VN VPLRR +Q +VIATSTKVDISGV + K   D YF                
Sbjct:   184 LVTGPLAVNRVPLRRAHQKFVIATSTKVDISGVKIPKHLTDAYFKKKKLRKPKHQEGEIF 243

Query:   178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
                     +  + +K DQK VD+Q++  I+ V  L+ YL + FSL +G+ PH+LVF
Sbjct:   244 DTEKEKYEIT-EQRKTDQKAVDSQILARIKKVPQLRGYLRSTFSLSNGVYPHKLVF 298

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|Q2YGT9 RPL6 "60S ribosomal protein L6" [Sus scrofa (taxid:9823)]

 Score = 369 (135.0 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 83/176 (47%), Positives = 112/176 (63%)

Query:    64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
             +YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRV+FLKQL+SGLL
Sbjct:   111 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLL 169

Query:   119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
             LVTGP  +N VPLRR +Q +VIATSTK+DISGV + +   D YF                
Sbjct:   170 LVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIF 229

Query:   178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
                     +  + +K DQK VD+Q+++ I+AV  L+ YL + F+L +G+ PH+LVF
Sbjct:   230 DTEKEKYEI-SEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|619826 Rpl6 "ribosomal protein L6" [Rattus norvegicus (taxid:10116)]

 Score = 367 (134.2 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 86/176 (48%), Positives = 110/176 (62%)

Query:    64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
             +YP +DV + L++  K KP      +LR+SITPGTV I+L GR  GKRVVFLKQL SGLL
Sbjct:   125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLL 183

Query:   119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
             LVTGP  +N VPLRR +Q +VIATSTKVDIS V + K   D YF                
Sbjct:   184 LVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIF 243

Query:   178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
                     +  + +K DQK VD+Q++  I+AV  L+ YL ++FSL +GM PH+LVF
Sbjct:   244 DTEKEKYEIT-EQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1LQS3 Rpl6 "60S ribosomal protein L6" [Rattus norvegicus (taxid:10116)]

 Score = 367 (134.2 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 86/176 (48%), Positives = 110/176 (62%)

Query:    64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
             +YP +DV + L++  K KP      +LR+SITPGTV I+L GR  GKRVVFLKQL SGLL
Sbjct:   125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLL 183

Query:   119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
             LVTGP  +N VPLRR +Q +VIATSTKVDIS V + K   D YF                
Sbjct:   184 LVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIF 243

Query:   178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
                     +  + +K DQK VD+Q++  I+AV  L+ YL ++FSL +GM PH+LVF
Sbjct:   244 DTEKEKYEIT-EQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|H7C5Y5 H7C5Y5 "60S ribosomal protein L6" [Rattus norvegicus (taxid:10116)]

 Score = 367 (134.2 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 86/176 (48%), Positives = 110/176 (62%)

Query:    64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
             +YP +DV + L++  K KP      +LR+SITPGTV I+L GR  GKRVVFLKQL SGLL
Sbjct:   124 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLL 182

Query:   119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
             LVTGP  +N VPLRR +Q +VIATSTKVDIS V + K   D YF                
Sbjct:   183 LVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIF 242

Query:   178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
                     +  + +K DQK VD+Q++  I+AV  L+ YL ++FSL +GM PH+LVF
Sbjct:   243 DTEKEKYEIT-EQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 297

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9C5	RL63_ARATH	No assigned EC number	0.7896	1.0	1.0	yes	no
Q9C9C6	RL62_ARATH	No assigned EC number	0.7854	1.0	1.0	yes	no
P34091	RL6_MESCR	No assigned EC number	0.8080	0.9613	0.9572	N/A	no
Q9FZ76	RL61_ARATH	No assigned EC number	0.7885	0.9742	0.9742	no	no
P47991	RL6_CAEEL	No assigned EC number	0.4148	0.8626	0.9262	yes	no
P05739	RL6B_YEAST	No assigned EC number	0.5480	0.7510	0.9943	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00011799	RecName- Full=60S ribosomal protein L6; (232 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_X1707	RecName- Full=60S acidic ribosomal protein P0; (321 aa)				•	•	•			0.751
	estExt_fgenesh4_pm.C_LG_VIII0253	RecName- Full=60S acidic ribosomal protein P0; (323 aa)				•	•	•			0.749
	gw1.XVI.1998.1	SubName- Full=Putative uncharacterized protein; (204 aa)				•	•	•	•		0.700
	eugene3.00061162	SubName- Full=Putative uncharacterized protein; (208 aa)				•	•	•	•		0.698
	estExt_Genewise1_v1.C_LG_XIII3119	SubName- Full=Putative uncharacterized protein; (131 aa)				•		•	•		0.687
	eugene3.00190574	SubName- Full=Putative uncharacterized protein; (132 aa)				•		•	•		0.687
	gw1.1845.1.1	60S ribosomal protein L4/L1 (RPL4D) (408 aa)				•	•	•	•		0.687
	estExt_Genewise1_v1.C_280409	SubName- Full=Putative uncharacterized protein; (408 aa)				•	•	•	•		0.687
	estExt_fgenesh4_pm.C_LG_XVII0043	SubName- Full=Putative uncharacterized protein; (206 aa)				•	•	•	•		0.686
	eugene3.00002480	SubName- Full=Putative uncharacterized protein; (206 aa)				•	•	•	•		0.685

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
cd13156	152	cd13156, KOW_RPL6, KOW motif of Ribosomal Protein	5e-85
pfam01159	108	pfam01159, Ribosomal_L6e, Ribosomal protein L6e	7e-52
COG2163	125	COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [	5e-17
pfam03868	58	pfam03868, Ribosomal_L6e_N, Ribosomal protein L6,	5e-17
PRK04333	84	PRK04333, PRK04333, 50S ribosomal protein L14e; Va	3e-04

>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6

 Score =  249 bits (637), Expect = 5e-85
 Identities = 105/153 (68%), Positives = 128/153 (83%), Gaps = 1/153 (0%)

Query: 81  KPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVI 140
           KP KLR+SITPGTV ILLAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPLRRVNQ YVI
Sbjct: 1   KPRKLRSSITPGTVLILLAGRFRGKRVVFLKQLDSGLLLVTGPFKINGVPLRRVNQRYVI 60

Query: 141 ATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDA 200
           ATSTKVDISGV + K +D YF+++ +KKKKK EGEFFE EK++K V+ +++K+DQK VDA
Sbjct: 61  ATSTKVDISGVKVPKLNDAYFKRKKKKKKKKKEGEFFE-EKKKKYVVSEERKEDQKAVDA 119

Query: 201 QLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
            L+ +I+ V  LK YL +RFSL++G  PH++ F
Sbjct: 120 ALLAAIKKVPLLKGYLKSRFSLRNGDYPHKMKF 152

RPL6 contains KOW motif that has an extra ribosomal role as an oncogenic. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. . Length = 152

>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e

 Score =  163 bits (414), Expect = 7e-52
 Identities = 67/109 (61%), Positives = 84/109 (77%), Gaps = 2/109 (1%)

Query: 126 VNGVPLRRVNQSYVIATSTKVDISGVDLG-KFDDQYFEKEAEKKKKKGEGEFFEAEKEEK 184
           +NGVPLRRVNQ YVIATSTKVDISGV +  K +D+YF++E +KKKKK EGEFF AEK+EK
Sbjct: 1   INGVPLRRVNQRYVIATSTKVDISGVKVPEKINDEYFKREKKKKKKKSEGEFF-AEKKEK 59

Query: 185 KVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           K + + +K DQK VDA L+ +I+   DLK YL +RFSL+ G  PH + F
Sbjct: 60  KEVSEQRKADQKAVDAALLAAIKKHPDLKQYLKSRFSLRKGDYPHRMKF 108

Length = 108

>gnl|CDD|225074 COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]

 Score = 74.4 bits (183), Expect = 5e-17
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 2/126 (1%)

Query: 85  LRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATST 144
           +RAS+  G V ++ AGRF GK+VV +K +    +L+TGP KV GVP RR+N  ++  T  
Sbjct: 1   MRASLEVGRVVVVTAGRFAGKKVVIVKIIDDNFVLITGPKKVKGVPRRRINIKHLEPTDK 60

Query: 145 KVDI-SGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLI 203
            +D+  G    K            K  K   +  E +K  + +   ++    K V  + +
Sbjct: 61  VIDLVRGASDEKVKKANEAAGVLAKLDK-SAKNLETKKVREPLTDAERFKVMKLVKEERL 119

Query: 204 KSIEAV 209
           +  +A 
Sbjct: 120 QVGKAF 125

Length = 125

>gnl|CDD|217770 pfam03868, Ribosomal_L6e_N, Ribosomal protein L6, N-terminal domain

 Score = 72.1 bits (177), Expect = 5e-17
 Identities = 26/57 (45%), Positives = 32/57 (56%)

Query: 1  MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAET 57
          M         SRNPDL RG+G++SRS MYH+R L+  KAK GG  PK  P     + 
Sbjct: 1  MPVAKKKKHRSRNPDLARGIGRYSRSAMYHRRALYKRKAKKGGTKPKVKPPATVVKP 57

Length = 58

>gnl|CDD|235283 PRK04333, PRK04333, 50S ribosomal protein L14e; Validated

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 87  ASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKV 146
            +I  G V +  AGR  G++ V +  +    +LVTGP  + GV  RR N  ++  T  KV
Sbjct: 2   PAIEVGRVCVKTAGREAGRKCVIVDIIDKNFVLVTGP-SLTGVKRRRCNIKHLEPTDKKV 60

Query: 147 DIS 149
           DI 
Sbjct: 61  DIE 63

Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PF01159	108	Ribosomal_L6e: Ribosomal protein L6e ; InterPro: I	100.0
KOG1694	152	consensus 60s ribosomal protein L6 [Translation, r	100.0
COG2163	125	RPL14A Ribosomal protein L14E/L6E/L27E [Translatio	99.81
PTZ00471	134	60S ribosomal protein L27; Provisional	99.45
PF03868	59	Ribosomal_L6e_N: Ribosomal protein L6, N-terminal	99.35
PRK04333	84	50S ribosomal protein L14e; Validated	99.13
KOG3418	136	consensus 60S ribosomal protein L27 [Translation,	98.44
PTZ00065	130	60S ribosomal protein L14; Provisional	97.97
CHL00141	83	rpl24 ribosomal protein L24; Validated	95.04
PRK12281	76	rplX 50S ribosomal protein L24; Reviewed	94.61
PTZ00194	143	60S ribosomal protein L26; Provisional	94.52
PRK01191	120	rpl24p 50S ribosomal protein L24P; Validated	94.39
TIGR01080	114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	94.2
PRK00004	105	rplX 50S ribosomal protein L24; Reviewed	92.17
KOG3421	136	consensus 60S ribosomal protein L14 [Translation,	91.41
TIGR01079	104	rplX_bact ribosomal protein L24, bacterial/organel	91.28
COG0198	104	RplX Ribosomal protein L24 [Translation, ribosomal	90.91
KOG1694	152	consensus 60s ribosomal protein L6 [Translation, r	87.1
smart00739	28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	86.14
PF00467	32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	81.01

>PF01159 Ribosomal_L6e: Ribosomal protein L6e ; InterPro: IPR000915 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.6e-49  Score=314.67  Aligned_cols=107  Identities=59%  Similarity=0.945  Sum_probs=98.2

Q ss_pred             ecCcceeeeecceEEeeeeeEecCCccc-CCCChhhhhHHHhhhhcccccccccccccccccCChhhHHhHHHHHHHHHH
Q 026764          126 VNGVPLRRVNQSYVIATSTKVDISGVDL-GKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIK  204 (233)
Q Consensus       126 lNgvPlrRv~q~yVIaTSTkvdis~vki-~~~~D~YF~k~~~~k~k~~e~eiF~~~k~~k~~vseqrk~dQK~VD~~il~  204 (233)
                      |||||||||||+|||||||+||||+|++ ++|||+||++.+.++++++|++||+.+ +++|++||||++|||+||++||+
T Consensus         1 iNGVPLRRVnQ~yVIATSTkvDis~v~ip~~~~D~YF~~~~~~k~k~~e~~~f~~~-~~k~~~se~rk~dQK~VD~~ll~   79 (108)
T PF01159_consen    1 INGVPLRRVNQAYVIATSTKVDISGVKIPEKIDDAYFKRKKKKKKKKGEGDFFAEK-KEKYKVSEQRKADQKAVDAQLLA   79 (108)
T ss_dssp             SSS--SEEESSCCCEECSCESCHCCHHH-CCTTGSSSCHCCCCHHHHHHCHCCHHH-HHCCCCHHHHHHHHHCSHHCSHC
T ss_pred             CCCCcceecccceEEEEeeEEeccccchhhccchHHHHhhhhccccccHHHHHhcc-cccccCCHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999 559999999988777788999999966 47999999999999999999999


Q ss_pred             HHHhhhhHHhhhcCcccccCCCCccccCC
Q 026764          205 SIEAVLDLKTYLSARFSLKSGMKPHELVF  233 (233)
Q Consensus       205 ~Ikk~p~L~~YL~s~FsL~~g~~PH~m~F  233 (233)
                      +|+++|+|++||+|+|+|++|||||+|+|
T Consensus        80 aIkk~p~L~~YL~s~FsL~~g~~PH~m~F  108 (108)
T PF01159_consen   80 AIKKHPELKGYLKSRFSLRKGDYPHKMKF  108 (108)
T ss_dssp             CCCTCCCTHHHHHCCCCHCTTTSSSSS--
T ss_pred             HHhcCHHHHHhhhhheeCCCCCcCccCCC
Confidence            99999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes mammalian ribosomal protein L6 (L6 was previously known as TAX-responsive enhancer element binding protein 107); Caenorhabditis elegans ribosomal protein L6 (R151.3); Saccharomyces cerevisiae (Baker's yeast) ribosomal protein YL16A/YL16B; and Mesembryanthemum crystallinum (Common ice plant) ribosomal protein YL16-like. These proteins have 175 (yeast) to 287 (mammalian) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_E 4A1D_E 4A19_E 4A1B_E 3IZR_G 3O58_F 3O5H_F 3IZS_G.

>KOG1694 consensus 60s ribosomal protein L6 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.8e-43  Score=292.17  Aligned_cols=140  Identities=50%  Similarity=0.810  Sum_probs=131.2

Q ss_pred             CCCCCCCCCCCCccccCCCCCcccccccccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEE
Q 026764           61 PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVI  140 (233)
Q Consensus        61 ~p~~Yptedv~~~~~~~k~~~~~klR~SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVI  140 (233)
                      +|.|||+      ...+.+.++++||+||+||||||||+                         .+||+|++|++|+|+|
T Consensus        12 ~~~~yp~------~k~~~~~~~~k~r~~l~~gtvliil~-------------------------~~ng~~~~~v~~~~~~   60 (152)
T KOG1694|consen   12 PPADYPR------KKARYSAKPSKLRASLTPGTVLIILA-------------------------PINGVPLKRVNERYVA   60 (152)
T ss_pred             Chhhccc------hhccccccchhhhhccCCCeeEEEec-------------------------ccCCcCcccccceEEe
Confidence            8999998      23345678999999999999999999                         6999999999999999


Q ss_pred             eeeeeEecCCcccCC-CChhhhhHHHhhhhcccccccccccccccccCChhhHHhHHHHHHHHHHHHHhhhhHHhhhcCc
Q 026764          141 ATSTKVDISGVDLGK-FDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSAR  219 (233)
Q Consensus       141 aTSTkvdis~vki~~-~~D~YF~k~~~~k~k~~e~eiF~~~k~~k~~vseqrk~dQK~VD~~il~~Ikk~p~L~~YL~s~  219 (233)
                      +||+ ||+++|+++. +||+||.+.+.++.+++|++||++++ |+|+++||++.|||+||++||++|+.+|+|+.||.++
T Consensus        61 ~ts~-i~~~~vk~~e~~td~yf~K~k~~~~k~~e~~i~~~ek-ekyeIteq~kiDqKaVDs~il~~iK~ip~lk~yl~~~  138 (152)
T KOG1694|consen   61 TTSK-IDPSNVKIPEHLTDAYFKKKKLKKKKTQEGEIFAEEK-EKYEITEQRKIDQKAVDSQILPKIKAIPQLKKYLGSV  138 (152)
T ss_pred             eeee-eccccccccccccHHHHhhhhccccccccchhhcccc-cccccchhhhhhHHHHHHHHHHHHhhchHhhhccchh
Confidence            9988 9999999965 99999999988889999999999874 8999999999999999999999999999999999999


Q ss_pred             ccccCCCCccccCC
Q 026764          220 FSLKSGMKPHELVF  233 (233)
Q Consensus       220 FsL~~g~~PH~m~F  233 (233)
                      |+|++|+|||+|+|
T Consensus       139 f~l~~g~~Ph~l~f  152 (152)
T KOG1694|consen  139 FALTNGIYPHKLKF  152 (152)
T ss_pred             hhccCCCCcccccC
Confidence            99999999999998

>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=5.4e-20  Score=150.49  Aligned_cols=123  Identities=29%  Similarity=0.406  Sum_probs=98.8

Q ss_pred             ccccccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecCCccc-CCCChhhhhH
Q 026764           85 LRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL-GKFDDQYFEK  163 (233)
Q Consensus        85 lR~SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki-~~~~D~YF~k  163 (233)
                      ++.+|.||+|+++++||++||+||+|++++.+.+|++||..+||||.+|+|.+|+++|++.+|+..... +.+.-+|+..
T Consensus         1 ~~~~l~~GrVvvv~~GR~aGkk~VIv~~iDd~~v~i~gp~~v~gv~r~r~n~~~l~~t~~~~~~~rg~~~~~v~~~~~a~   80 (125)
T COG2163           1 MRASLEVGRVVVVTAGRFAGKKVVIVKIIDDNFVLITGPKKVKGVPRRRINIKHLEPTDKVIDLVRGASDEKVKKANEAA   80 (125)
T ss_pred             CCccccCCeEEEEecceeCCceEEEEEEccCCEEEEeCCccccCCccccccceeeeccceeeeecccccHHHHHHHHHhh
Confidence            478899999999999999999999999999999999999999999999999999999999999877544 5577777776


Q ss_pred             HHhhhhcccccccccccccccccCChhhHHhHHHHHHHHHHHHHh
Q 026764          164 EAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEA  208 (233)
Q Consensus       164 ~~~~k~k~~e~eiF~~~k~~k~~vseqrk~dQK~VD~~il~~Ikk  208 (233)
                      ...-+.-..+ +-|..++-.+.....++.++||.++++.+..+++
T Consensus        81 ~~~~~~~~~~-~~~~~k~~~~~~~~~~r~~~~k~~~~~~~~~~k~  124 (125)
T COG2163          81 GVLAKLDKSA-KNLETKKVREPLTDAERFKVMKLVKEERLQVGKA  124 (125)
T ss_pred             hhhccccccc-hhhhhhhhhcccchHHHHHHHHHHHHHHhhhhcc
Confidence            5433222222 3333332233445678999999999999988765

>PTZ00471 60S ribosomal protein L27; Provisional

Probab=99.45  E-value=1.2e-13  Score=114.20  Aligned_cols=62  Identities=39%  Similarity=0.670  Sum_probs=59.0

Q ss_pred             cccCCcEEEEecceecCceEEEEeeccC-------ceEEEec----ccee--------------cCcceeeeecceEEee
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQLTS-------GLLLVTG----PFKV--------------NGVPLRRVNQSYVIAT  142 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL~s-------glLLVTG----P~~l--------------NgvPlrRv~q~yVIaT  142 (233)
                      -+.||.|+|+|+|||+|+++|+||++++       |.+||+|    |.++              ....+..+|.+|+++|
T Consensus         4 ~~kpgkVVivL~GR~AGkKaVivk~~ddgt~drpy~halVaGIdryP~kVtk~M~kkki~KRskiK~FvK~vNynHlmPT   83 (134)
T PTZ00471          4 FLKPGKVVIVTSGRYAGRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKRTIARRSQVGVFLRVVNHKHFLPT   83 (134)
T ss_pred             cccCCEEEEEEccccCCcEEEEEeecCCCCccCcCceEEEEeecccchhhhhhccHHHHHHHhccccceEEEeeceeccc
Confidence            4789999999999999999999999999       5999999    9999              8889999999999999


Q ss_pred             eeeEecC
Q 026764          143 STKVDIS  149 (233)
Q Consensus       143 STkvdis  149 (233)
                      ++.+||+
T Consensus        84 RY~vdi~   90 (134)
T PTZ00471         84 RYNMDMS   90 (134)
T ss_pred             ceeeecc
Confidence            9999998

>PF03868 Ribosomal_L6e_N: Ribosomal protein L6, N-terminal domain; InterPro: IPR005568 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.35  E-value=5.2e-14  Score=101.95  Aligned_cols=44  Identities=52%  Similarity=0.837  Sum_probs=26.2

Q ss_pred             CCCCCCCCCCCCCcccccCccccchhhhhhccccceeeecCCCc
Q 026764            1 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGV   44 (233)
Q Consensus         1 ma~~~~~~~~~rn~~l~~Gi~r~Srs~~y~rk~~~~~k~k~gg~   44 (233)
                      ||++-...||+||++|++||+|||||+||+|+|+|+.|.+.++.
T Consensus         1 m~~kK~k~~~~RN~~L~~GI~RySrS~my~kralyk~K~k~~~~   44 (59)
T PF03868_consen    1 MAPKKKKPHCSRNPVLVRGIGRYSRSAMYHKRALYKRKKKAAKK   44 (59)
T ss_dssp             ------------HHHHHTTTSHHHHHHHHHHHHH-S-THHHHHH
T ss_pred             CccccccccccCChhhhCccccccHHHHHHHHHHHHHhcccCCc
Confidence            77777777799999999999999999999999999877544333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_G.

>PRK04333 50S ribosomal protein L14e; Validated

Probab=99.13  E-value=1.2e-10  Score=89.67  Aligned_cols=62  Identities=37%  Similarity=0.527  Sum_probs=58.9

Q ss_pred             cccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecCC
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISG  150 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~  150 (233)
                      .+.+|.|+++++|+++|+.+|+++.++++.+||.||+. +++|-++.|.+++..|+++++++.
T Consensus         3 ~v~~GrvV~~~~Grd~gk~~vIv~i~d~~~vlVdg~~~-~~~~rk~kn~khl~lt~~ki~~~~   64 (84)
T PRK04333          3 AIEVGRVCVKTAGREAGRKCVIVDIIDKNFVLVTGPSL-TGVKRRRCNIKHLEPTDKKVDIEK   64 (84)
T ss_pred             cccccEEEEEeccCCCCCEEEEEEEecCCEEEEECCCc-CCCCCeeechHHEEEeeEEEECCC
Confidence            57899999999999999999999999999999999998 999999999999999999998754

>KOG3418 consensus 60S ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=3e-07  Score=76.44  Aligned_cols=63  Identities=32%  Similarity=0.616  Sum_probs=56.2

Q ss_pred             cccccCCcEEEEecceecCceEEEEeeccCc-------eEEEeccceecCcce---------------------eeeecc
Q 026764           86 RASITPGTVFILLAGRFMGKRVVFLKQLTSG-------LLLVTGPFKVNGVPL---------------------RRVNQS  137 (233)
Q Consensus        86 R~SitpGtvlIlL~Gr~~GKRvVfLKqL~sg-------lLLVTGP~~lNgvPl---------------------rRv~q~  137 (233)
                      .+-+.||.||++++|+++|+++|++|+.+.|       .+||.|   |...|+                     .-+|-.
T Consensus         2 ~kflkPgkvv~v~sG~yAg~KaVivk~~Ddg~~d~p~~h~LvAg---i~ryP~kvt~~~gkkk~~krsk~k~flKv~ny~   78 (136)
T KOG3418|consen    2 AKFLKPGKVVLVLSGRYAGKKAVIVKNIDDGTEDKPYGHALVAG---VDRYPRKVTKSMGKKKLAKRSKVKPFLKVINYN   78 (136)
T ss_pred             cccccCCcEEEeecccccCccEEEEeecccCCccCCCceeeeee---hhhccccccccccchhhhhcccceeEEEEeecc
Confidence            3568899999999999999999999999987       999999   778887                     458999


Q ss_pred             eEEeeeeeEecCCc
Q 026764          138 YVIATSTKVDISGV  151 (233)
Q Consensus       138 yVIaTSTkvdis~v  151 (233)
                      ++++|...+|+-..
T Consensus        79 hlMptRy~vdv~~~   92 (136)
T KOG3418|consen   79 HLMPTRYTVDVLAL   92 (136)
T ss_pred             cccCcceEEeehhh
Confidence            99999999998644

>PTZ00065 60S ribosomal protein L14; Provisional

Probab=97.97  E-value=1.9e-05  Score=65.59  Aligned_cols=62  Identities=23%  Similarity=0.345  Sum_probs=58.2

Q ss_pred             cccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecCC
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISG  150 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~  150 (233)
                      -+.+|.|+.|..|.+.||-||++--++..-+||.|| ...|||-+.+|-+.+.-|.-+|+|.-
T Consensus         7 fVEiGRVvli~~Gp~~GKL~vIVDIID~nRvLVDGP-~~tgV~Rq~i~~k~l~LT~~~v~i~r   68 (130)
T PTZ00065          7 FVEPGRLCLIQYGPDAGKLCFIVDIVTPTRVLVDGA-FITGVKRQSIPLKRLKLTDEKIKINR   68 (130)
T ss_pred             ceeeceEEEEecCCCCCCEEEEEEEEcCCeEEEeCC-CcCCcceeEEeccceEEccEEEecCC
Confidence            467999999999999999999999999999999999 67799999999999999999998854

>CHL00141 rpl24 ribosomal protein L24; Validated

Probab=95.04  E-value=0.028  Score=43.22  Aligned_cols=65  Identities=20%  Similarity=0.208  Sum_probs=47.6

Q ss_pred             cccccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCcce-----eeeecceEEeeeeeEecCCccc
Q 026764           86 RASITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPL-----RRVNQSYVIATSTKVDISGVDL  153 (233)
Q Consensus        86 R~SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPl-----rRv~q~yVIaTSTkvdis~vki  153 (233)
                      .-.|.+|+.+++++|+++||.-..++-+ +++.++|.|   +|-+--     ..-.+.-++.-..-|++|||.+
T Consensus         6 ~~~I~~GD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Veg---vn~~~k~~k~~~~~~~g~i~~~e~pI~~SnV~l   76 (83)
T CHL00141          6 KMHVKIGDTVKIISGSDKGKIGEVLKIIKKSNKVIVKG---INIKFKHIKPNKENEVGEIKQFEAPIHSSNVML   76 (83)
T ss_pred             eCcccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEcC---cEEEEEEcCCccCCCCCCEEEEECCCCHHHEEE
Confidence            3368899999999999999999999986 578999999   553211     1122344555566778888865

>PRK12281 rplX 50S ribosomal protein L24; Reviewed

Probab=94.61  E-value=0.046  Score=41.44  Aligned_cols=62  Identities=23%  Similarity=0.284  Sum_probs=44.1

Q ss_pred             cccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCcce-----eeeecceEEeeeeeEecCCcc
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPL-----RRVNQSYVIATSTKVDISGVD  152 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPl-----rRv~q~yVIaTSTkvdis~vk  152 (233)
                      .|..|+-+++++|+++||.-..++-+ .++-++|.|   +|-+--     ..-.+-=++....-|++|||.
T Consensus         6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Veg---vn~~kkh~kp~~~~~~G~i~~~e~pI~~SnV~   73 (76)
T PRK12281          6 KVKKGDMVKVIAGDDKGKTGKVLAVLPKKNRVIVEG---VKIAKKAIKPSQKNPNGGFIEKEMPIHISNVK   73 (76)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEcC---cEEEEEEcCCCccCCCCCEEEEEcCcCHHHce
Confidence            58899999999999999999999985 588899999   665421     111123344445566667664

>PTZ00194 60S ribosomal protein L26; Provisional

Probab=94.52  E-value=0.12  Score=43.79  Aligned_cols=63  Identities=10%  Similarity=0.150  Sum_probs=49.2

Q ss_pred             cccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCcceeeeecceEEeeeeeEecCCccc--CCCChh
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL--GKFDDQ  159 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki--~~~~D~  159 (233)
                      .|.-|+.|+|++|.|+|++--.++-+ .++-++|.|   ||   +..-|.+=   ...-|++|||-|  +.++|.
T Consensus        46 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~ViVEg---vn---~~Kk~gk~---~e~PIh~SNV~iv~l~l~~~  111 (143)
T PTZ00194         46 PVRKDDEVMVVRGHHKGREGKVTAVYRKKWVIHIEK---IT---REKANGEP---VQIGIHPSNVIITKLKLNKD  111 (143)
T ss_pred             eeecCCEEEEecCCCCCCceEEEEEEcCCCEEEEeC---eE---EEecCCCE---eecCcCchheEEEccccCch
Confidence            37889999999999999999999986 477899888   44   33444433   355889999998  458877

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated

Probab=94.39  E-value=0.072  Score=43.92  Aligned_cols=57  Identities=18%  Similarity=0.271  Sum_probs=45.0

Q ss_pred             cccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCcceeeeecceEEeeeeeEecCCccc
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL  153 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki  153 (233)
                      -|..|+.|+|++|.|+|+.--.++-+ +.+-++|.|   +|-+-    .+-  +....-|++|||.+
T Consensus        45 ~IkkGD~V~VisG~~KGk~GkV~~V~~~~~~V~VeG---vn~~k----~~G--~~~e~pIh~SNV~l  102 (120)
T PRK01191         45 PVRKGDTVKVMRGDFKGEEGKVVEVDLKRGRIYVEG---VTVKK----ADG--TEVPRPIHPSNVMI  102 (120)
T ss_pred             eEeCCCEEEEeecCCCCceEEEEEEEcCCCEEEEeC---cEEEC----CCC--eEEEcccchhHeEE
Confidence            37799999999999999999999986 478899999   55322    122  44556789999987

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic

Probab=94.20  E-value=0.073  Score=43.40  Aligned_cols=63  Identities=24%  Similarity=0.297  Sum_probs=47.6

Q ss_pred             cccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCcceeeeecceEEeeeeeEecCCcccCC--CChh
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK--FDDQ  159 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki~~--~~D~  159 (233)
                      .|.-|+.|+|++|.|+|+.-.+++-+ ..+.++|.|   ||-+-   -+ -  +....-|++|||.+-.  +||+
T Consensus        41 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~~~~~V~Veg---vn~~k---~~-G--~~~e~pIh~SnV~l~~l~l~~~  106 (114)
T TIGR01080        41 PVRKGDKVRIMRGDFKGHEGKVSKVDLKRYRIYVEG---VTKEK---VN-G--TEVPVPIHPSNVMITKLNLDDE  106 (114)
T ss_pred             eeecCCEEEEecCCCCCCEEEEEEEEcCCCEEEEcC---eEEEC---CC-C--eEEEeeechHHeEEEeccCChH
Confidence            47789999999999999999999986 477899999   55332   12 2  4566679999998733  5543

This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.

>PRK00004 rplX 50S ribosomal protein L24; Reviewed

Probab=92.17  E-value=0.19  Score=40.10  Aligned_cols=63  Identities=35%  Similarity=0.447  Sum_probs=47.9

Q ss_pred             cccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCccee-e----eecceEEeeeeeEecCCccc
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPLR-R----VNQSYVIATSTKVDISGVDL  153 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPlr-R----v~q~yVIaTSTkvdis~vki  153 (233)
                      .|.+|+-+.+++|+++||.-..++-+ .++-++|.|   +|-+... +    -++-=++....-|.+|||.+
T Consensus         4 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Veg---vn~~k~h~k~~~~~~~G~i~~~e~pI~~SnV~l   72 (105)
T PRK00004          4 KIKKGDTVIVIAGKDKGKRGKVLKVLPKKNKVIVEG---VNIVKKHQKPNQENPQGGIIEKEAPIHISNVAL   72 (105)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEcC---cEEEEEecCCCCCCCCCceEEEECCcCHHHEEE
Confidence            47899999999999999999999986 478899988   5543221 1    12344566677889999976

>KOG3421 consensus 60S ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=91.41  E-value=0.24  Score=41.67  Aligned_cols=61  Identities=25%  Similarity=0.354  Sum_probs=52.5

Q ss_pred             cccccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEec
Q 026764           86 RASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDI  148 (233)
Q Consensus        86 R~SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdi  148 (233)
                      ..+...|.|.++..|.+.||=|+++-+.++...||-||  ..+||..-+|-.-+.-|--.+|+
T Consensus         4 ~r~veVGrva~v~~G~~~GkL~AIVdviDqnr~lvDGp--~t~v~rq~~~~~~~~LT~~~~kf   64 (136)
T KOG3421|consen    4 KRFVEVGRVALVSFGPDAGKLVAIVDVIDQNRALVDGP--CTGVPRQAMNLKCLQLTDFVLKF   64 (136)
T ss_pred             hhhhhcceEEEEEecCCCceEEEEEEeecchhhhccCc--ccccchhhcchhheeeeeeeEec
Confidence            45678999999999999999999999999999999999  56888877777777777666665

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle

Probab=91.28  E-value=0.28  Score=39.24  Aligned_cols=63  Identities=32%  Similarity=0.402  Sum_probs=48.7

Q ss_pred             cccCCcEEEEecceecCceEEEEeecc-CceEEEeccceecCcceee----ee--cceEEeeeeeEecCCccc
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLRR----VN--QSYVIATSTKVDISGVDL  153 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlrR----v~--q~yVIaTSTkvdis~vki  153 (233)
                      .|..|+-+.+++|+++||.-..++-+. ++-++|.|   +|-+.-+-    .+  +--++....-|.+|||.+
T Consensus         3 ~ikkGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Veg---vN~~kkh~k~~~~~~~~g~i~~~e~pI~~SnV~l   72 (104)
T TIGR01079         3 KIKKGDTVKVISGKDKGKRGKVLKVLPKTNKVIVEG---VNMVKKHVKPKPTQRSQGGIIEKEAPIHISNVML   72 (104)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEECC---cEEEEEecCcccCCCCCCceEEEEccCCHHHeEE
Confidence            377999999999999999999999974 78899999   65432211    12  456677777889999976

This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=90.91  E-value=0.39  Score=38.72  Aligned_cols=58  Identities=26%  Similarity=0.386  Sum_probs=46.4

Q ss_pred             ccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecc--------eEEeeeeeEecCCccc
Q 026764           89 ITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQS--------YVIATSTKVDISGVDL  153 (233)
Q Consensus        89 itpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~--------yVIaTSTkvdis~vki  153 (233)
                      |.-|+.+++++|.++|+.-..|+-+... ++|-|      |-+...|++        =+|-.-.-|++|||.|
T Consensus         5 IrkGD~V~Vi~GkdKGk~GkVl~v~~k~-V~VEG------vnv~kkh~k~~~~~~~ggii~~EapIh~SnV~i   70 (104)
T COG0198           5 VKKGDTVKVIAGKDKGKEGKVLKVLPKK-VVVEG------VNVVKKHIKPSQENPEGGIINKEAPIHISNVAI   70 (104)
T ss_pred             eecCCEEEEEecCCCCcceEEEEEecCe-EEEEC------cEEEEecCCCCCcCCCCceeeeeecccHHHeEE
Confidence            5679999999999999999999999877 77776      556677776        2444446788999977

>KOG1694 consensus 60s ribosomal protein L6 [Translation, ribosomal structure and biogenesis]

Probab=87.10  E-value=0.079  Score=45.23  Aligned_cols=75  Identities=8%  Similarity=-0.136  Sum_probs=60.4

Q ss_pred             CCCCCCCCCccccCC----CCCcccccccccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecce
Q 026764           64 FYPADDVKKPLVNKR----KHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSY  138 (233)
Q Consensus        64 ~Yptedv~~~~~~~k----~~~~~klR~SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~y  138 (233)
                      +|.+|+...+....+    .++....+++..++|.....-+.+.+.++++..++-.+|..+.|+...+..++.+-++.|
T Consensus        74 e~~td~yf~K~k~~~~k~~e~~i~~~ekekyeIteq~kiDqKaVDs~il~~iK~ip~lk~yl~~~f~l~~g~~Ph~l~f  152 (152)
T KOG1694|consen   74 EHLTDAYFKKKKLKKKKTQEGEIFAEEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLKKYLGSVFALTNGIYPHKLKF  152 (152)
T ss_pred             ccccHHHHhhhhccccccccchhhcccccccccchhhhhhHHHHHHHHHHHHhhchHhhhccchhhhccCCCCcccccC
Confidence            557777655543222    345678888999999999999999999999999988899999999999999888877765

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif

Probab=86.14  E-value=1.1  Score=26.38  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=21.5

Q ss_pred             ccCCcEEEEecceecCceEEEEee
Q 026764           89 ITPGTVFILLAGRFMGKRVVFLKQ  112 (233)
Q Consensus        89 itpGtvlIlL~Gr~~GKRvVfLKq  112 (233)
                      +.+|+.+.|+.|.|+|.-.++++.
T Consensus         2 ~~~G~~V~I~~G~~~g~~g~i~~i   25 (28)
T smart00739        2 FEVGDTVRVIAGPFKGKVGKVLEV   25 (28)
T ss_pred             CCCCCEEEEeECCCCCcEEEEEEE
Confidence            579999999999999998888764

Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=81.01  E-value=2.7  Score=26.38  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=23.0

Q ss_pred             CCcEEEEecceecCceEEEEeeccCc
Q 026764           91 PGTVFILLAGRFMGKRVVFLKQLTSG  116 (233)
Q Consensus        91 pGtvlIlL~Gr~~GKRvVfLKqL~sg  116 (233)
                      +|+.+.|+.|+|+|.-...++-..+.
T Consensus         1 ~Gd~V~V~~G~~~G~~G~I~~i~~~~   26 (32)
T PF00467_consen    1 VGDTVKVISGPFKGKIGKIVEIDRSK   26 (32)
T ss_dssp             TTSEEEESSSTTTTEEEEEEEEETTT
T ss_pred             CCCEEEEeEcCCCCceEEEEEEECCC
Confidence            68999999999999999999887654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
3izr_G	219	Localization Of The Large Subunit Ribosomal Protein		1e-67
4a18_E	191	T.Thermophila 60s Ribosomal Subunit In Complex With		3e-39
3izs_G	176	Localization Of The Large Subunit Ribosomal Protein		4e-38
3zf7_v	192	High-resolution Cryo-electron Microscopy Structure		2e-19
2kds_A	95	Structure Of Ribosomal Protein L14e From Sulfolobus		3e-04
2joy_A	96	Nmr Structure Of 50s Ribosomal Protein L14e From Su		3e-04

>pdb|3IZR|G Chain G, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 219

Iteration: 1
 Score =  252 bits (643), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/215 (60%), Positives = 151/215 (70%), Gaps = 5/215 (2%)
Query: 19  GVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKR 78
           G+ + SRS  YH+RGLWAIKAK+GG  PK +              FYPADDVK   V+ R
Sbjct: 10  GIKRASRSHTYHRRGLWAIKAKHGGALPKAEKPAAIAEPK-----FYPADDVKPRTVSTR 64
Query: 79  KHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSY 138
           K  PTKLR++ITPGTV ILLAGR+MGKRVVFLKQL SGLLL+TGPFK+NGVP+RRVNQ+Y
Sbjct: 65  KPHPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAY 124
Query: 139 VIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTV 198
           VIATSTKVDIS V++ KFDD+YF                         LPD KKDDQK +
Sbjct: 125 VIATSTKVDISKVNVQKFDDKYFAREKKTRAKKTEGELFESDKEATKNLPDFKKDDQKVI 184
Query: 199 DAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
           DA+LIK+I+AV DLK YL ARFSL+ G KPHE+ F
Sbjct: 185 DAELIKAIDAVPDLKNYLGARFSLRDGDKPHEMTF 219

>pdb|4A18|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 191

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 109/174 (62%), Gaps = 4/174 (2%)
Query: 64  FYPADDVKKPLVNK--RKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVT 121
           +Y ADD   P   +  +K   TKLR  I PGTV ILLAGRF GKRVVFLKQL SGLLLVT
Sbjct: 18  WYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVT 77
Query: 122 GPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXX--XXXXXXX 179
           GP+KVNGVPL+RVNQ+Y ++TSTKVD++GV+  KF+D YF                    
Sbjct: 78  GPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGREKARKNHKNLFKAELTEE 137
Query: 180 XXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
                    + +K DQ+ VD  L+ +++ V  LK YL+++F+L +  +PHE+ F
Sbjct: 138 QKKKETERKNARKQDQQAVDTPLLAAVKKVEFLKNYLASKFTLNNNDRPHEMKF 191

>pdb|3IZS|G Chain G, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 176

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 64  FYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGP 123
           +YP++DV      ++  +P KLRAS+ PGTV ILLAGRF GKRVV+LK L    LL++GP
Sbjct: 9   WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGP 68
Query: 124 FKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXX 183
           FKVNGVPLRRVN  YVIATSTKV + GV++ KF+ +YF                      
Sbjct: 69  FKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQNK 128
Query: 184 XXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
              +  ++ +DQK VD  LI  I+    LK YLSA FSLK+G KPH L F
Sbjct: 129 E--IKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176

>pdb|3ZF7|VV Chain v, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 192

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 75  VNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLRR 133
           V+++  + + +R S  PGT+ I+LAGRF G+R V LKQL  +G L+++GP K +GVP+RR
Sbjct: 16  VSRKSPEYSTVRKSCKPGTIAIILAGRFRGRRAVILKQLPKNGPLVISGPMKYSGVPIRR 75
Query: 134 VNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXX--------------XXXXXX 179
           ++  Y+IATST+VD++GVD      + F                                
Sbjct: 76  IDSRYIIATSTRVDLTGVDTSAITPEIFKREKKEKRVKSEGEFMGDKDKKKAESKAKKTS 135
Query: 180 XXXXXXVLPDDKKDDQKTVDAQLIKSIEA---VLDLKTYLSARFSLKSGMKPHEL 231
                  + D++   Q  +D  LI++I+      ++  YL + F++K G  PH L
Sbjct: 136 KAAPKGTVSDERAQLQNAIDTALIQAIKKDPLGKEMAGYLHSVFTIKPGDAPHRL 190

>pdb|2KDS|A Chain A, Structure Of Ribosomal Protein L14e From Sulfolobus Solfataricus Length = 95

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 88  SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
           +I  G + + + GR  G + V +  +    +LVTGP  + GV  RRVN  ++  T  K+D
Sbjct: 2   AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 61
Query: 148 IS 149
           I 
Sbjct: 62  IQ 63

>pdb|2JOY|A Chain A, Nmr Structure Of 50s Ribosomal Protein L14e From Sulfolobus Solfataricus: Northeast Structural Genomics Consortium Target Ssr105 Length = 96

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 88  SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
           +I  G + + + GR  G + V +  +    +LVTGP  + GV  RRVN  ++  T  K+D
Sbjct: 3   AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
           I 
Sbjct: 63  IQ 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
3iz5_G	219	60S ribosomal protein L6 (L6E); eukaryotic ribosom	3e-90
3izc_G	176	60S ribosomal protein RPL6 (L6E); eukaryotic ribos	3e-70
4a18_E	191	RPL6; ribosome, eukaryotic initiation factor 6, EI	8e-67
2joy_A	96	50S ribosomal protein L14E; protein solution struc	9e-23

>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E Length = 191

 Score =  203 bits (518), Expect = 8e-67
 Identities = 90/178 (50%), Positives = 123/178 (69%), Gaps = 4/178 (2%)

Query: 60  KPPKFYPADDVKKPLVNKR--KHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGL 117
           K  K+Y ADD   P   ++  K   TKLR  I PGTV ILLAGRF GKRVVFLKQL SGL
Sbjct: 14  KISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGL 73

Query: 118 LLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGE-- 175
           LLVTGP+KVNGVPL+RVNQ+Y ++TSTKVD++GV+  KF+D YF +E  +K  K   +  
Sbjct: 74  LLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGREKARKNHKNLFKAE 133

Query: 176 FFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
             E +K+++    + +K DQ+ VD  L+ +++ V  LK YL+++F+L +  +PHE+ F
Sbjct: 134 LTEEQKKKETERKNARKQDQQAVDTPLLAAVKKVEFLKNYLASKFTLNNNDRPHEMKF 191

>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A Length = 96

 Score = 88.0 bits (218), Expect = 9e-23
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 87  ASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKV 146
            +I  G + + + GR  G + V +  +    +LVTGP  + GV  RRVN  ++  T  K+
Sbjct: 2   PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKI 61

Query: 147 DIS-GVDLGKFDDQYFEKEAEKKKKKGE 173
           DI  G    +   +  E    +  K+  
Sbjct: 62  DIQKGASDEEVKKKLEESNLTEYMKEKI 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3iz5_G	219	60S ribosomal protein L6 (L6E); eukaryotic ribosom	100.0
3izc_G	176	60S ribosomal protein RPL6 (L6E); eukaryotic ribos	100.0
4a18_E	191	RPL6; ribosome, eukaryotic initiation factor 6, EI	100.0
2joy_A	96	50S ribosomal protein L14E; protein solution struc	99.78
4a18_N	144	RPL27, ribosomal protein L22; ribosome, eukaryotic	99.42
3j21_5	83	50S ribosomal protein L14E; archaea, archaeal, KIN	99.15
3izc_N	138	60S ribosomal protein RPL14 (L14E); eukaryotic rib	98.97
3izc_a	136	60S ribosomal protein RPL27 (L27E); eukaryotic rib	98.91
3iz5_a	136	60S ribosomal protein L27 (L27E); eukaryotic ribos	98.8
3iz5_N	134	60S ribosomal protein L14 (L14E); eukaryotic ribos	98.54
4a18_F	126	RPL14; ribosome, eukaryotic initiation factor 6, E	98.24
2zjr_R	115	50S ribosomal protein L24; ribosome, large ribosom	95.28
3r8s_U	102	50S ribosomal protein L24; protein biosynthesis, R	94.36
2zkr_t	145	60S ribosomal protein L26; protein-RNA complex, 60	94.03
3j21_U	121	50S ribosomal protein L24P; archaea, archaeal, KIN	93.76
1vq8_T	120	50S ribosomal protein L24P; ribosome 50S, protein-	93.65
3v2d_Y	110	50S ribosomal protein L24; ribosome associated inh	93.64
3u5e_Y	127	L33, YL33, 60S ribosomal protein L26-A; translatio	92.59
2ftc_N	96	Mitochondrial ribosomal protein L24; mitochondrial	92.21
4a17_S	135	RPL26, 60S ribosomal protein L21; eukaryotic ribos	91.15
3iz5_Y	150	60S ribosomal protein L26 (L24P); eukaryotic ribos	90.63
3bbo_W	191	Ribosomal protein L24; large ribosomal subunit, sp	86.45

>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E

Probab=100.00  E-value=1.6e-74  Score=496.22  Aligned_cols=173  Identities=53%  Similarity=0.889  Sum_probs=163.3

Q ss_pred             cCCCCCCCCCCCCCCccccC--CCCCcccccccccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeee
Q 026764           58 PAKPPKFYPADDVKKPLVNK--RKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVN  135 (233)
Q Consensus        58 ~~k~p~~Yptedv~~~~~~~--k~~~~~klR~SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~  135 (233)
                      .+|||+||||||+|+++.++  +++|+++||+||+||||||||+|||+||||||||||+|||||||||++||||||||+|
T Consensus        12 ~~k~p~~YPtedv~~~~~~~~~~~~~~~klr~si~pGtVlIiL~Gr~~GKrvV~LKql~sgllLVtGP~~vn~vplrrvn   91 (191)
T 4a18_E           12 VSKISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVTGPYKVNGVPLKRVN   91 (191)
T ss_dssp             TTSHHHHCCCCCSCCCCCCTTTTTCCCCCCCTTCCTTEEEEECSSTTTTBEEEEEEECTTSCEEEECCTTTSSCCSEEEC
T ss_pred             cccccccCCcccccccccccccccccchhhhccccCCCEEEEeccccCCCEEEEEEecCCCeEEEecCccccCCceEEEe
Confidence            56999999999999997777  6899999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEeeeeeEecCCcccCCCChhhhhHHHhhhhccccccccccc---cccccc--CChhhHHhHHHHHHHHHHHHHhhh
Q 026764          136 QSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE---KEEKKV--LPDDKKDDQKTVDAQLIKSIEAVL  210 (233)
Q Consensus       136 q~yVIaTSTkvdis~vki~~~~D~YF~k~~~~k~k~~e~eiF~~~---k~~k~~--vseqrk~dQK~VD~~il~~Ikk~p  210 (233)
                      |+|||||||+||||||++++|||+||++++   ++++|+|||+++   ++++|+  +||||++|||+||++||++|+++|
T Consensus        92 ~~~vi~TstkvDis~vki~~~~d~YF~k~k---~k~~e~eiF~~~~~~kek~~~~~iseqrk~dQK~VD~~ll~~IKk~p  168 (191)
T 4a18_E           92 QAYTLSTSTKVDLTGVNTAKFEDDYFGREK---ARKNHKNLFKAELTEEQKKKETERKNARKQDQQAVDTPLLAAVKKVE  168 (191)
T ss_dssp             GGGEEEEEEECCCTTCCGGGCCGGGSCCCC---CCCCTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             eeeEEeeeeEeecccccccccCHHHhcccc---cccchhhhhcccccchhhcccccccHHHHHHHHHHHHHHHHHHhcCH
Confidence            999999999999999999999999999764   378999999876   433355  999999999999999999999999


Q ss_pred             hHHhhhcCcccccCCCCccccCC
Q 026764          211 DLKTYLSARFSLKSGMKPHELVF  233 (233)
Q Consensus       211 ~L~~YL~s~FsL~~g~~PH~m~F  233 (233)
                      +|++||+|+|+|+||||||+|+|
T Consensus       169 ~L~~YL~s~FsL~~g~~PH~m~F  191 (191)
T 4a18_E          169 FLKNYLASKFTLNNNDRPHEMKF  191 (191)
T ss_dssp             THHHHHHSBCCCCTTCCTTTCCC
T ss_pred             HHHhhccceeECCCCCcCccccC
Confidence            99999999999999999999999

>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A

Probab=99.78  E-value=1.4e-19  Score=140.41  Aligned_cols=74  Identities=31%  Similarity=0.483  Sum_probs=68.3

Q ss_pred             cccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecCCcccCCCChhhhhHHH
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEA  165 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki~~~~D~YF~k~~  165 (233)
                      +++||+|+|+++|||+||++|||+++++|++||+||...|++|.+|+|++|+++|++++|+..    .++|+|+++.-
T Consensus         3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~~----~~~~~~vrkal   76 (96)
T 2joy_A            3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQK----GASDEEVKKKL   76 (96)
T ss_dssp             SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCCS----SCCHHHHHHHH
T ss_pred             ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEEEeeEEEeCCC----CCChHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999999999532    26999998643

>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N

Probab=99.42  E-value=8.6e-14  Score=115.25  Aligned_cols=73  Identities=32%  Similarity=0.435  Sum_probs=62.9

Q ss_pred             cccCCcEEEEecceecCceEEEEeeccC-------ceEEEec----cceecC-------cceee-------eecceEEee
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQLTS-------GLLLVTG----PFKVNG-------VPLRR-------VNQSYVIAT  142 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL~s-------glLLVTG----P~~lNg-------vPlrR-------v~q~yVIaT  142 (233)
                      -++||+|+|+|+|||+|++||+||++++       |.+||+|    |.++++       ++..+       +|.+|+++|
T Consensus         4 f~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~pT   83 (144)
T 4a18_N            4 FLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPT   83 (144)
T ss_dssp             CCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEEEE
T ss_pred             cccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEEEe
Confidence            3789999999999999999999999999       7999999    999999       88888       999999999


Q ss_pred             eeeE--ecCCcccCCCChhhhh
Q 026764          143 STKV--DISGVDLGKFDDQYFE  162 (233)
Q Consensus       143 STkv--dis~vki~~~~D~YF~  162 (233)
                      ++.|  ||. ++ .-++.+-|+
T Consensus        84 ry~v~~di~-lK-~~v~~d~~~  103 (144)
T 4a18_N           84 RYSVKELCD-FK-ELVKEDKIK  103 (144)
T ss_dssp             EEECSTTCC-HH-HHSCHHHHH
T ss_pred             eEEeeccCc-hh-hccCHHHhh
Confidence            9999  874 22 115555554

>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.15  E-value=2.7e-11  Score=91.85  Aligned_cols=61  Identities=33%  Similarity=0.547  Sum_probs=57.6

Q ss_pred             cccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecC
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIS  149 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis  149 (233)
                      .+.+|.|+++++||++|+.+|+++.++++.+||.|| .++|||.+++|.+++..|+.+|++.
T Consensus         3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~-~~~~v~rk~kn~khl~lt~~~i~~~   63 (83)
T 3j21_5            3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKIDIP   63 (83)
T ss_dssp             CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECC-TTTTCCCEEESCSSCEEEEEECCCC
T ss_pred             ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECC-ccCccCCeEechHHEEEeeEEEECC
Confidence            478999999999999999999999999999999999 6799999999999999999998754

>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7

Probab=98.24  E-value=1.1e-06  Score=71.40  Aligned_cols=58  Identities=19%  Similarity=0.264  Sum_probs=54.3

Q ss_pred             cccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEe-cC
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD-IS  149 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvd-is  149 (233)
                      =+.+|.|++++.|+++||-||++..++.+.+||.||-    ||.+.+|-+++..|.-+|| |.
T Consensus         6 fvevGRVv~i~~G~~aGklavIVdIID~nrvLVdGp~----V~Rq~~n~k~l~LT~~~v~~i~   64 (126)
T 4a18_F            6 FVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEH----IVRQVIPIRRVHLTKFQIDNVE   64 (126)
T ss_dssp             EEETTEEEEECSSTTTTEEEEEEEEETTTEEEEEETT----EEEEEEEGGGEEEEEEECTTCC
T ss_pred             ceecceEEEEccCCccCCEEEEEEEecCCeEEEeCCC----cccceeeccceEEcceeccccC
Confidence            3679999999999999999999999999999999996    9999999999999999887 63

>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V

Probab=95.28  E-value=0.013  Score=46.57  Aligned_cols=67  Identities=27%  Similarity=0.307  Sum_probs=50.2

Q ss_pred             cccccccccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCc-----ceeeeecceEEeeeeeEecCCccc
Q 026764           82 PTKLRASITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGV-----PLRRVNQSYVIATSTKVDISGVDL  153 (233)
Q Consensus        82 ~~klR~SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgv-----PlrRv~q~yVIaTSTkvdis~vki  153 (233)
                      .+++  .|..|+.+++++|.++||+-..|+-+ +.+-++|.|   +|-+     |-..-.|-=++....-|++|||.+
T Consensus        11 ~rkm--~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEG---vN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~l   83 (115)
T 2zjr_R           11 NDKL--HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG---VNVITKNVKPSMTNPQGGQEQRELALHASKVAL   83 (115)
T ss_dssp             TSCC--SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS---SCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEEC
T ss_pred             ceeC--cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---cEeEEEecCCCcCCCCCCEEEEEcccCHHHEEE
Confidence            3445  58899999999999999999999987 478999999   7755     221112333444566789999977

>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...

Probab=94.36  E-value=0.059  Score=41.96  Aligned_cols=62  Identities=26%  Similarity=0.382  Sum_probs=48.3

Q ss_pred             ccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceee------eecceEEeeeeeEecCCccc
Q 026764           89 ITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRR------VNQSYVIATSTKVDISGVDL  153 (233)
Q Consensus        89 itpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrR------v~q~yVIaTSTkvdis~vki  153 (233)
                      |..|+-+++++|.++||.-..|+-+..+-++|.|   +|-+--.-      -.|-=+|....-|++|||.+
T Consensus         4 IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVeG---vN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~l   71 (102)
T 3r8s_U            4 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG---INLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAI   71 (102)
T ss_dssp             SCSSCEEEECSSSSTTCEEEEEEEETTTEEEETT---CSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEE
T ss_pred             ccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEeC---eEEEEeccccCcccCCCCCEEEEECCcCHHHEEE
Confidence            6789999999999999999999988669999998   66432211      22344666667899999977

>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=94.03  E-value=0.036  Score=45.76  Aligned_cols=64  Identities=14%  Similarity=0.217  Sum_probs=47.6

Q ss_pred             cccCCcEEEEecceecCce-EEEEeec-cCceEEEeccceecCcceeeeecceEEeeeeeEecCCccc--CCCChhh
Q 026764           88 SITPGTVFILLAGRFMGKR-VVFLKQL-TSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL--GKFDDQY  160 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKR-vVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki--~~~~D~Y  160 (233)
                      .|..|+.|+|++|.++|+. -..|.-+ ..+-++|.|   ||-   .+.+-   +....-|++|||.+  ++.+++-
T Consensus        48 ~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEg---vn~---~Kp~G---~~~e~PIh~SNV~lv~~~~~k~~  115 (145)
T 2zkr_t           48 PIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIER---VQR---EKANG---TTVHVGIHPSKVVITRLKLDKDR  115 (145)
T ss_dssp             BCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETT---CEE---ECSSC---CEEECCBCGGGEEECC-CCCHHH
T ss_pred             ccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEee---eEe---EcCCC---ceEEeccCHHHEEEEcCcCCchH
Confidence            3889999999999999999 8888887 478999888   663   33332   34445689999988  3455543

>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=93.76  E-value=0.049  Score=43.66  Aligned_cols=62  Identities=15%  Similarity=0.156  Sum_probs=47.3

Q ss_pred             cccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCcceeeeecceEEeeeeeEecCCccc--CCCCh
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL--GKFDD  158 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki--~~~~D  158 (233)
                      .|..|+-|++++|.++|+.-..++-+ +.+-++|.|   ||-+-   .|.   +....-|++|||.+  +.++|
T Consensus        45 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEg---vn~~k---~~G---~~~e~pIh~SNV~l~~~~~~d  109 (121)
T 3j21_U           45 PVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEG---ATLRK---TNG---TEVFYPIHPSNVMIIELNLED  109 (121)
T ss_dssp             ECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETT---CEEEC---SSS---CEEECCBCGGGEEEEECCCCC
T ss_pred             ccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeC---eEEEe---cCC---cEEEcccCHHHeEEEcCccCC
Confidence            37799999999999999999999987 478999998   55332   233   34456889999987  34444

>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...

Probab=93.65  E-value=0.062  Score=43.04  Aligned_cols=57  Identities=18%  Similarity=0.296  Sum_probs=44.7

Q ss_pred             cccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCcceeeeecceEEeeeeeEecCCccc
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL  153 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki  153 (233)
                      .|..|+.|++++|.++|+.--.++-+ ..+-++|.|   +|-   .+.+-.   ..-.-|++|||.+
T Consensus        42 ~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEg---vn~---kK~~Gg---~~e~pIh~SNV~i   99 (120)
T 1vq8_T           42 RVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED---VTL---EKTDGE---EVPRPLDTSNVRV   99 (120)
T ss_dssp             ECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CEE---ECSSSC---EEECCBCGGGEEE
T ss_pred             cccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeC---eEe---EcCCCC---EEEeeechHHEEE
Confidence            38899999999999999999999987 478999988   652   333333   3344779999987

>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...

Probab=93.64  E-value=0.056  Score=42.62  Aligned_cols=63  Identities=21%  Similarity=0.267  Sum_probs=49.0

Q ss_pred             cccCCcEEEEecceecCceEEEEeecc-CceEEEeccceecCcce-----eeeecceEEeeeeeEecCCccc
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPL-----RRVNQSYVIATSTKVDISGVDL  153 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL~-sglLLVTGP~~lNgvPl-----rRv~q~yVIaTSTkvdis~vki  153 (233)
                      .|..|+-+++++|.++||.-..|+-+. .+-++|.|   +|-+--     ..-.+-=++....-|++|||.+
T Consensus         6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEG---vN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~l   74 (110)
T 3v2d_Y            6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEG---VNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRP   74 (110)
T ss_dssp             SCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETT---SSEEEEECCSSSSSTTCCEEEEECCEEGGGEEE
T ss_pred             ccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeC---EEEEEEEeCCCccCCCCCEEEEECCcCHHHeEE
Confidence            377999999999999999999999876 68999998   664321     1112445677777999999987

>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U

Probab=92.59  E-value=0.18  Score=40.76  Aligned_cols=62  Identities=15%  Similarity=0.120  Sum_probs=47.2

Q ss_pred             ccCCcEEEEecceecCceEEEEeecc-CceEEEeccceecCcceeeeecceEEeeeeeEecCCccc--CCCChh
Q 026764           89 ITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL--GKFDDQ  159 (233)
Q Consensus        89 itpGtvlIlL~Gr~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki--~~~~D~  159 (233)
                      |.-|+-|++++|.++|+.--.|+-+. .+-++|.|   ||-+   ..|..-   .-.-|++|||-|  +++++.
T Consensus        50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~~---~e~pIh~SNV~i~~~~~dk~  114 (127)
T 3u5e_Y           50 IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDK---VTKE---KVNGAS---VPINLHPSKLVITKLHLDKD  114 (127)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEET---CEEE---CSSSCE---EECCBCGGGEEEEECCCCHH
T ss_pred             ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeC---eEEE---CCCCcE---EEcccchHHEEEEccccCcH
Confidence            67899999999999999999999876 68999998   5543   334432   234789999988  445543

>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N

Probab=92.21  E-value=0.11  Score=39.95  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=44.5

Q ss_pred             CcEEEEecceecCceEEEEeec-cCceEEEeccceecCc-----ceeeeecceEEeeeeeEecCCccc
Q 026764           92 GTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGV-----PLRRVNQSYVIATSTKVDISGVDL  153 (233)
Q Consensus        92 GtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgv-----PlrRv~q~yVIaTSTkvdis~vki  153 (233)
                      |+-+++++|.++||.-..|+-+ ..+-++|.|   +|-+     |-. -.|-=++....-|++|||.+
T Consensus         1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeG---vN~~kkh~kp~~-~~~Ggiv~~e~pIh~SNV~l   64 (96)
T 2ftc_N            1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGG---LNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKL   64 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---CEEEEEEcCCCC-CCCCCEEEEecCcCHHHEEE
Confidence            6889999999999999999987 578999999   6654     221 22345565667889999976

>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S

Probab=91.15  E-value=0.19  Score=41.11  Aligned_cols=61  Identities=15%  Similarity=0.232  Sum_probs=46.4

Q ss_pred             ccCCcEEEEecceecCceEEEEeecc-CceEEEeccceecCcceeeeecceEEeeeeeEecCCccc--CCCCh
Q 026764           89 ITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL--GKFDD  158 (233)
Q Consensus        89 itpGtvlIlL~Gr~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki--~~~~D  158 (233)
                      |.-|+-|++++|.++|+.--.|+-+. .+-++|.|   ||-+   ..|..   ..-.-|++|||-|  +++++
T Consensus        49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~---~~e~pIh~SNV~i~~~k~dk  112 (135)
T 4a17_S           49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEK---ISKN---KLNGA---PYQIPLSASQLVLTKLKLDK  112 (135)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CCEE---ETTTE---EECCCBCGGGEEEEECCCCH
T ss_pred             ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeC---eEEE---cCCCC---EEEcccchHHEEEEcccCCc
Confidence            77899999999999999999999875 68999888   5543   33432   2344789999988  34543

>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=86.45  E-value=0.067  Score=46.00  Aligned_cols=63  Identities=17%  Similarity=0.169  Sum_probs=47.1

Q ss_pred             cccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCcce-----eeeecceEEeeeeeEecCCccc
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPL-----RRVNQSYVIATSTKVDISGVDL  153 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPl-----rRv~q~yVIaTSTkvdis~vki  153 (233)
                      .|..||-|++++|.++||.-..|+-+ ..+-++|.|   ||-+--     ..-.|-=+|....-|++|||.+
T Consensus        68 kIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEG---VN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~L  136 (191)
T 3bbo_W           68 HVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKD---LNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVML  136 (191)
T ss_dssp             CSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSS---CCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEE
T ss_pred             eeecCCEEEEeecCCCCceEEEEEEECCCCEEEEeC---CEEEEEecCCcccCCCCCEEEEecCcCHHHeEE
Confidence            48899999999999999999999987 478899999   776532     1111233444456788899876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d2joya1	96	b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolob	3e-24

>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 90.5 bits (225), Expect = 3e-24
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 87  ASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKV 146
            +I  G + + + GR  G + V +  +    +LVTGP  + GV  RRVN  ++  T  K+
Sbjct: 2   PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKI 61

Query: 147 DISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKK 185
           DI         D+  +K+ E+          E  KE+ K
Sbjct: 62  DIQ----KGASDEEVKKKLEES------NLTEYMKEKIK 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d2joya1	96	Ribosomal protein L14e {Sulfolobus solfataricus [T	99.84
d1vqot1	119	Ribosomal proteins L24 (L24p) {Archaeon Haloarcula	93.59
d2gycs1	99	Ribosomal proteins L24 (L24p) {Escherichia coli [T	91.31
d2zjrr1	110	Ribosomal proteins L24 (L24p) {Deinococcus radiodu	90.64
d2do3a1	62	Transcription elongation factor SPT5 {Human (Homo	86.8
d2j01y1	101	Ribosomal proteins L24 (L24p) {Thermus thermophilu	81.37

>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=8.5e-22  Score=151.63  Aligned_cols=75  Identities=31%  Similarity=0.478  Sum_probs=68.4

Q ss_pred             ccccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecCCcccCCCChhhhhHHH
Q 026764           87 ASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEA  165 (233)
Q Consensus        87 ~SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki~~~~D~YF~k~~  165 (233)
                      +++++|+|+|+++|+|+||+||+|+++++|++||+||+.+||||++|+|++|+++|+++|||+.    ..++.++++.-
T Consensus         2 ~~VevGrV~ii~~G~~~GK~~vIvdiid~~rvLVdGP~~~tgV~r~~in~k~l~lT~~~i~i~~----~a~~~~v~ka~   76 (96)
T d2joya1           2 PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQK----GASDEEVKKKL   76 (96)
T ss_dssp             CSSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCCS----SCCHHHHHHHH
T ss_pred             CceeccEEEEEeecCCCCCEEEEEEEecCCeEEEecccccCCcccEEEchHHEEeccEEEEccC----CCCcHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999998642    26888887643

>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.59  E-value=0.033  Score=42.66  Aligned_cols=62  Identities=19%  Similarity=0.336  Sum_probs=47.8

Q ss_pred             ccCCcEEEEecceecCceEEEEeecc-CceEEEeccceecCcceeeeecceEEeeeeeEecCCccc--CCCChh
Q 026764           89 ITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL--GKFDDQ  159 (233)
Q Consensus        89 itpGtvlIlL~Gr~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki--~~~~D~  159 (233)
                      |.-|+.|.|++|.|.|+.--.|+-+. ++-++|.|   ||   +..-|+.-   .-.-|++|||.|  +..+|.
T Consensus        42 IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~V~Veg---in---~~k~~~k~---~~~pIh~SNv~i~~~~~~~~  106 (119)
T d1vqot1          42 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED---VT---LEKTDGEE---VPRPLDTSNVRVTDLDLEDE  106 (119)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CE---EECTTSCE---EECCBCGGGEEEEECCCCSH
T ss_pred             eeCCCEEEEeecCCCCCcceEEEEECCCCEEEEeC---cE---EEecCCce---eeccCchHHEEEEeCcCCcc
Confidence            77899999999999999999999864 79999988   55   34445543   344799999987  334443

>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Escherichia coli [TaxId: 562]

Probab=91.31  E-value=0.061  Score=39.82  Aligned_cols=62  Identities=29%  Similarity=0.429  Sum_probs=47.7

Q ss_pred             ccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceee--e---e-cceEEeeeeeEecCCccc
Q 026764           89 ITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRR--V---N-QSYVIATSTKVDISGVDL  153 (233)
Q Consensus        89 itpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrR--v---~-q~yVIaTSTkvdis~vki  153 (233)
                      |..|+-+++++|..+||.-..|+-++.+-++|.|   +|-+--+.  .   + +-=+|..-.-|++|||.+
T Consensus         2 ikkGD~V~VisGkdKGK~G~V~~V~~~~~viVeG---vN~~kkh~Kp~~~~~~~Ggiv~~E~pIh~SNV~l   69 (99)
T d2gycs1           2 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG---INLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAI   69 (99)
T ss_dssp             CCTTSEEECSSSTTTTCEEEEEEECTTSEEEETT---CCEECTTCCEECCCSCCCSSCCCSCCEETTTCCS
T ss_pred             ccCCCEEEEeeCCCCCCceEEEEEECCCeEEEeC---eEEEEEEeCCCCCcCCCCCEEEEEeeEEhhHEEE
Confidence            5689999999999999999999999989999999   66443211  1   1 123566667889999975

>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.64  E-value=0.14  Score=38.46  Aligned_cols=62  Identities=26%  Similarity=0.324  Sum_probs=47.5

Q ss_pred             ccCCcEEEEecceecCceEEEEeecc-CceEEEeccceecCccee-e---ee-cceEEeeeeeEecCCccc
Q 026764           89 ITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLR-R---VN-QSYVIATSTKVDISGVDL  153 (233)
Q Consensus        89 itpGtvlIlL~Gr~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlr-R---v~-q~yVIaTSTkvdis~vki  153 (233)
                      |.-|+-|++++|.++||.-..|+-+. .+-++|.|   ||=+--. +   -| +-=+|..-.-|++|||.+
T Consensus        13 ikkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeG---vN~~kkh~Kp~~~~~~Ggiv~~E~PIhiSNV~l   80 (110)
T d2zjrr1          13 FKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG---VNVITKNVKPSMTNPQGGQEQRELALHASKVAL   80 (110)
T ss_dssp             SCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS---SCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEEC
T ss_pred             eeCCCEEEEeecCCCCcceEEEEEECCCCEEEEeC---cEEEEEEecccccCCCCCeEeeeeeEEhhhEEE
Confidence            67899999999999999999999995 78999999   7754321 1   12 123555566789999876

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.80  E-value=0.44  Score=32.45  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=30.1

Q ss_pred             cccccccccCCcEEEEecceecCceEEEEeeccCceEEE
Q 026764           82 PTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV  120 (233)
Q Consensus        82 ~~klR~SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLV  120 (233)
                      ...||+-+.+|+-+-++.|+|+|.--..++.-++-.+|.
T Consensus         4 ~~~LrK~F~~GDhVkVi~G~~~g~tGlVV~v~~~~v~~~   42 (62)
T d2do3a1           4 AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILF   42 (62)
T ss_dssp             CCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEE
T ss_pred             hHHheeccCCCCeEEEeccEEcCccEEEEEEeCCEEEEE
Confidence            457899999999999999999997666666654444443

>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Thermus thermophilus [TaxId: 274]

Probab=81.37  E-value=0.074  Score=39.46  Aligned_cols=63  Identities=24%  Similarity=0.312  Sum_probs=47.3

Q ss_pred             cccCCcEEEEecceecCceEEEEeecc-CceEEEeccceecCccee-eee----cceEEeeeeeEecCCccc
Q 026764           88 SITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLR-RVN----QSYVIATSTKVDISGVDL  153 (233)
Q Consensus        88 SitpGtvlIlL~Gr~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlr-Rv~----q~yVIaTSTkvdis~vki  153 (233)
                      .|.-|+.+++++|.++||.-..|+-+. .+.++|.|   +|=+--+ +.+    +--++.-..-|++|||.+
T Consensus         5 kIkkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeG---vN~~kkh~k~~~~~~~Ggi~~~E~pIh~SNV~l   73 (101)
T d2j01y1           5 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEG---VNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRP   73 (101)
T ss_dssp             CSCCSSCEECCSSTTSSCCBSCCCCCCTTCBCCTTS---CCCCCCCCCSCCCSSCCCSSCCCCCCBGGGCEE
T ss_pred             EEECCCEEEEeeCCCCCCeEEEEEEECCCCEEEEEc---ceEEEEeecCCCCCCccceEEEEccccHHHeEE
Confidence            377899999999999999999999986 69999999   7744321 111    223455556789999965