Citrus Sinensis ID: 026779

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MRVFRSQGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSGRSLHDIVMVKHCCIYCQFYIK
Secondary Structure (PSIPRED)
ccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHccccccccHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccHHcHHHHHHHHHHcHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEcccccEEEEEEEccHHHcccccccccccccccccHccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccHcHHHHHcccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccEEEEEHHHHHHHHHHHHcccccccccHHHEHHHHccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrvfrsqggcvairtlspsssinryshahgsapgpaasddatcgtptwigkgltcvcfkrkgtyeRICINLTPQQAERLRRLKHRMKVyfdasrpdHQEALRALWAatypdqelhgLISDQWkemgwqgkdpstdfrgagfISLENLLFFAKTFSTSFQRLLRKqggkradweypfavAGVNITFMLMQMLdleatkprtFVRSVFLQMlsgrslhdiVMVKHCCIYCQFYIK
Flexible Loop (DISEMBL)
mrvfrsqggcvaiRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYericinltpqQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQggkradweyPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSgrslhdivMVKHCCIYCQFYIK
Low Complexity Region (SEG)
MRVFRSQGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSGRSLHDIVMVKHCCIYCQFYIK
Disordered region (IsUnstruct)
*****************************************TCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSGRSLHDIVMVKHCCIYCQFYI*
Disordered Region (DISOPRED)
*******G*C******************************ATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAAT*************WKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL********DWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSGRSLHDIVMVKHCCIYCQFYIK
Disordered Region (DISEMBL)
********GCVAIRTLSPSSSINR****************ATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSGRSLHDIVMVKHCCIYCQFYIK
Disordered Region (DISPRO)
*RVFRSQGGCVAIRTLSPSSSIN*****************ATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSGRSLHDIVMVKHCCIYCQFYIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRVFRSQGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSGRSLHDIVMVKHCCIYCQFYIK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q54YW1	977	ELMO domain-containing pr	yes	no	0.480	0.114	0.398	7e-21
Q54VR8	284	ELMO domain-containing pr	no	no	0.472	0.387	0.336	9e-18
Q8BGF6	293	ELMO domain-containing pr	yes	no	0.802	0.638	0.292	7e-17
Q54RS7	618	ELMO domain-containing pr	no	no	0.497	0.187	0.333	9e-17
Q8IZ81	293	ELMO domain-containing pr	yes	no	0.454	0.361	0.361	1e-16
Q5NVD7	326	ELMO domain-containing pr	no	no	0.472	0.337	0.366	4e-16
Q0IIE6	326	ELMO domain-containing pr	yes	no	0.472	0.337	0.358	1e-15
Q8N336	334	ELMO domain-containing pr	no	no	0.472	0.329	0.352	2e-15
Q08DZ3	293	ELMO domain-containing pr	no	no	0.454	0.361	0.342	3e-15
Q3V1U8	326	ELMO domain-containing pr	no	no	0.472	0.337	0.351	3e-15

>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1

 Score =  100 bits (249), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 1/113 (0%)

Query: 75  QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 134
           Q  R + + +R  V F+    +H   L  LW+ TYP  +L   +S+QWK+MG+QG DP T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421

Query: 135 DFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFML 187
           DFR  G   L+NL++FA+ ++  F++++  Q   R + EYP A AG+ +TF L
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQ-IDRKEREYPTATAGIVLTFEL 473

Functions as a negative regulator of actin polymerization. Modulates actin/myosin II at cortex actinomyosins to prevent excessive F-actin polymerization around the cell periphery, thereby maintaining proper cell shape during phagocytosis and chemotaxis.
Dictyostelium discoideum (taxid: 44689)

>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=4 SV=1

 Score = 90.5 bits (223), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 68/113 (60%), Gaps = 3/113 (2%)

Query: 80  RRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGA 139
           + ++ + K+ +D +  +H+ +L  LW A  PD      +S +W  +G+QG DP+TDFRG 
Sbjct: 108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGM 167

Query: 140 GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLD 192
           G + L+NL++F+   S   + +L+    K     YPFA+ G+NIT +++ ++D
Sbjct: 168 GILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLID 217

Dictyostelium discoideum (taxid: 44689)

>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 15/202 (7%)

Query: 2   RVFRSQGGCVAIRTLSPSSSINRYSHAH--GSAPGPAASDDATCGTPTWIGKGLTCVCFK 59
           R+F + GG  A RT    +S+  YS      +A   A S+   C       K    +C +
Sbjct: 33  RIFDTYGG--AQRTYRIENSLT-YSKNKVLQNATRVAQSELDRCIANIMKEKN---ICSE 86

Query: 60  RKGTYERICINLTPQQAERLRRLKHRM----KVYFDASRPDHQEALRALWAATYPDQELH 115
           +  +++ IC+     Q    ++L H +    K  +D++   H++ L  LW+   P ++L 
Sbjct: 87  KDTSFQ-ICMRTCLLQITGYKQLYHDVENVRKKPYDSANAQHEKMLLKLWSLLMPTKKLT 145

Query: 116 GLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYP 175
             IS QW ++G+QG DP TDFRG G + L NL++F++ +++   ++L +    +    Y 
Sbjct: 146 ARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLG--YS 203

Query: 176 FAVAGVNITFMLMQMLDLEATK 197
           +A+ G+N+T M   +L  EA K
Sbjct: 204 YAIVGINLTEMAYSLLKSEALK 225

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Mus musculus (taxid: 10090)

>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=4 SV=1

 Score = 87.0 bits (214), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 7/123 (5%)

Query: 71  LTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGK 130
           +T +Q++ ++ L  +    ++++ PDH+E L+ LW+  YP+QE     S  WK+ G+Q  
Sbjct: 357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415

Query: 131 DPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQM 190
           DP+ DFRG G + L NL+   +  +   Q +L +      D +YPFAVAG+NI+ ++ ++
Sbjct: 416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ------DRDYPFAVAGINISNLIFEV 469

Query: 191 LDL 193
             +
Sbjct: 470 FQI 472

Dictyostelium discoideum (taxid: 44689)

>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 90  FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLF 149
           +D+    H+E L  LW    P ++L+  IS QW E+G+QG DP TDFRG G + L NL++
Sbjct: 120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVY 179

Query: 150 FAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATK 197
           F++ +++   ++L +    +    Y +A+ G+N+T M   +L  EA K
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALK 225

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family. Regulates IFN-related antiviral responses.

Homo sapiens (taxid: 9606)

>sp|Q5NVD7|ELMD1_PONAB ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 21/131 (16%)

Query: 76  AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
            E+LRR        +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TD
Sbjct: 119 VEKLRREP------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172

Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 180
           FRG G + L NL +FA+  +T+ Q++L      +     +A+WE         Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232

Query: 181 VNITFMLMQML 191
           +NIT +   +L
Sbjct: 233 INITDLAYNLL 243

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Pongo abelii (taxid: 9601)

>sp|Q0IIE6|ELMD1_BOVIN ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 21/131 (16%)

Query: 76  AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
            E+LRR        +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TD
Sbjct: 119 VEKLRRES------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172

Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 180
           FRG G + L NL +FA+  + + Q++L      +     +A+WE         Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232

Query: 181 VNITFMLMQML 191
           +NIT +   +L
Sbjct: 233 INITDLAYNLL 243

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Bos taurus (taxid: 9913)

>sp|Q8N336|ELMD1_HUMAN ELMO domain-containing protein 1 OS=Homo sapiens GN=ELMOD1 PE=2 SV=3

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 29/139 (20%)

Query: 76  AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
            E+LRR        +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TD
Sbjct: 119 VEKLRR------EAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172

Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------------RKQGGK--RADWE-------- 173
           FRG G + L NL +FA+  +T+ Q++L            +++  K  +A+WE        
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAI 232

Query: 174 -YPFAVAGVNITFMLMQML 191
            Y FA+ G+NIT +   +L
Sbjct: 233 GYSFAIVGINITDLAYNLL 251

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Homo sapiens (taxid: 9606)

>sp|Q08DZ3|ELMD2_BOVIN ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 2/108 (1%)

Query: 90  FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLF 149
           +D+    H++ L  LW    P ++L   IS QW ++G+QG DP TDFRG G + L NL++
Sbjct: 120 YDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVY 179

Query: 150 FAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATK 197
           F++ +++   ++L +    +    Y +A+ G+N+T M   +L  EA K
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALK 225

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Bos taurus (taxid: 9913)

>sp|Q3V1U8|ELMD1_MOUSE ELMO domain-containing protein 1 OS=Mus musculus GN=Elmod1 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 21/131 (16%)

Query: 76  AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
            E+LRR        +D+  P H+E L  LW    P+  L   +S QW E+G+QG DP TD
Sbjct: 119 VEKLRREP------YDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTD 172

Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 180
           FRG G + L NL +FA+  +T  Q++L      +     + +WE         Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVG 232

Query: 181 VNITFMLMQML 191
           +NIT +   +L
Sbjct: 233 INITDLAYNLL 243

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
255547738	259	ELMO domain-containing protein, putative	0.751	0.675	0.897	8e-93
297738445	269	unnamed protein product [Vitis vinifera]	0.879	0.762	0.829	2e-92
225425436	301	PREDICTED: ELMO domain-containing protei	0.879	0.681	0.829	3e-92
224110714	239	predicted protein [Populus trichocarpa]	0.746	0.728	0.862	1e-86
449435069	276	PREDICTED: ELMO domain-containing protei	0.755	0.637	0.840	2e-85
108864397	285	phagocytosis and cell motility protein E	0.866	0.708	0.743	2e-84
194693986	287	unknown [Zea mays] gi|413920846|gb|AFW60	0.854	0.693	0.738	2e-84
253761537	249	hypothetical protein SORBIDRAFT_0019s004	0.746	0.698	0.816	2e-83
79374282	281	ELMO/CED-12 domain-containing protein [A	0.892	0.740	0.727	5e-83
51968574	304	unknown protein [Arabidopsis thaliana]	0.892	0.684	0.722	6e-83

>gi|255547738|ref|XP_002514926.1| ELMO domain-containing protein, putative [Ricinus communis] gi|223545977|gb|EEF47480.1| ELMO domain-containing protein, putative [Ricinus communis]

 Score =  345 bits (885), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 157/175 (89%), Positives = 170/175 (97%)

Query: 37  ASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPD 96
           +SDDATCGTPTWIGKGLTCVCFKRKG YERICINLTP Q ERL+RL+HRMK+YFDASRPD
Sbjct: 21  SSDDATCGTPTWIGKGLTCVCFKRKGAYERICINLTPHQEERLKRLRHRMKIYFDASRPD 80

Query: 97  HQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFST 156
           HQEALRALW+ATYPDQ+L GLISDQWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFST
Sbjct: 81  HQEALRALWSATYPDQQLRGLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFST 140

Query: 157 SFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLS 211
           SFQRLL+KQGGKR+ WEYPFAVAGVN+TFM+MQMLDL+A+KPRTFVRSVFLQMLS
Sbjct: 141 SFQRLLKKQGGKRSAWEYPFAVAGVNVTFMIMQMLDLDASKPRTFVRSVFLQMLS 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738445|emb|CBI27646.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/211 (82%), Positives = 190/211 (90%), Gaps = 6/211 (2%)

Query: 1   MRVFRSQGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKR 60
           M + R+QG CVAIRTLSPSS ++R  HA  S+     SDD TCGTPTWIG+GLTCVCFKR
Sbjct: 1   MSLERTQGSCVAIRTLSPSS-VSRCPHASASS-----SDDVTCGTPTWIGRGLTCVCFKR 54

Query: 61  KGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISD 120
           KGTYERICINLTP Q ERLRRL+HRMKVYFDASRPDHQEALRALW+ATYP QELHGLIS+
Sbjct: 55  KGTYERICINLTPHQEERLRRLRHRMKVYFDASRPDHQEALRALWSATYPGQELHGLISE 114

Query: 121 QWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAG 180
           QWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFS SFQ LL+KQ GKRA WEYPFAVAG
Sbjct: 115 QWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQLLLKKQRGKRAAWEYPFAVAG 174

Query: 181 VNITFMLMQMLDLEATKPRTFVRSVFLQMLS 211
           VNITFM+MQMLDL+A+KPRTFVR+VFLQMLS
Sbjct: 175 VNITFMIMQMLDLDASKPRTFVRAVFLQMLS 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425436|ref|XP_002271815.1| PREDICTED: ELMO domain-containing protein A-like [Vitis vinifera]

 Score =  343 bits (881), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 175/211 (82%), Positives = 190/211 (90%), Gaps = 6/211 (2%)

Query: 1   MRVFRSQGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKR 60
           M + R+QG CVAIRTLSPSS ++R  HA  S+     SDD TCGTPTWIG+GLTCVCFKR
Sbjct: 33  MSLERTQGSCVAIRTLSPSS-VSRCPHASASS-----SDDVTCGTPTWIGRGLTCVCFKR 86

Query: 61  KGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISD 120
           KGTYERICINLTP Q ERLRRL+HRMKVYFDASRPDHQEALRALW+ATYP QELHGLIS+
Sbjct: 87  KGTYERICINLTPHQEERLRRLRHRMKVYFDASRPDHQEALRALWSATYPGQELHGLISE 146

Query: 121 QWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAG 180
           QWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFS SFQ LL+KQ GKRA WEYPFAVAG
Sbjct: 147 QWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQLLLKKQRGKRAAWEYPFAVAG 206

Query: 181 VNITFMLMQMLDLEATKPRTFVRSVFLQMLS 211
           VNITFM+MQMLDL+A+KPRTFVR+VFLQMLS
Sbjct: 207 VNITFMIMQMLDLDASKPRTFVRAVFLQMLS 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110714|ref|XP_002315612.1| predicted protein [Populus trichocarpa] gi|222864652|gb|EEF01783.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 151/175 (86%), Positives = 166/175 (94%), Gaps = 1/175 (0%)

Query: 38  SDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDH 97
           +DDATCG+PTWIGKGLTCVCFKRKG YERICINLTPQQA+RL+RLK RMKVYFDASRP+H
Sbjct: 1   ADDATCGSPTWIGKGLTCVCFKRKGAYERICINLTPQQAKRLKRLKDRMKVYFDASRPEH 60

Query: 98  QEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFR-GAGFISLENLLFFAKTFST 156
           Q+ALRALW+ATYPD+EL GLISDQWKEMGWQG+DPSTDFR GAGF+SLENL+FFAKTFS 
Sbjct: 61  QDALRALWSATYPDRELSGLISDQWKEMGWQGRDPSTDFRLGAGFLSLENLVFFAKTFSI 120

Query: 157 SFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLS 211
           SFQ LLRKQGGKR+ WEYPFAVAGVNITFM+MQMLDL+A KPRTFVR VFLQ+LS
Sbjct: 121 SFQHLLRKQGGKRSAWEYPFAVAGVNITFMIMQMLDLDAMKPRTFVRPVFLQILS 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435069|ref|XP_004135318.1| PREDICTED: ELMO domain-containing protein A-like [Cucumis sativus] gi|449494913|ref|XP_004159681.1| PREDICTED: ELMO domain-containing protein A-like [Cucumis sativus]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 148/176 (84%), Positives = 161/176 (91%)

Query: 36  AASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRP 95
           ++SD  TCGTPTWIGKG+TC+CFKRKG+ ERICINLTP Q +RLRRLKHRMKVYFD SR 
Sbjct: 32  SSSDYVTCGTPTWIGKGITCICFKRKGSLERICINLTPVQEDRLRRLKHRMKVYFDGSRI 91

Query: 96  DHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFS 155
           +HQEALRALW A YP QEL  L+SDQWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFS
Sbjct: 92  NHQEALRALWYAAYPGQELQALVSDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFS 151

Query: 156 TSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLS 211
           TSFQ LLRKQGGK A WEYPFAVAGVNITFM+MQMLDL+A+KPRTF+RSVFLQMLS
Sbjct: 152 TSFQLLLRKQGGKPAAWEYPFAVAGVNITFMIMQMLDLDASKPRTFIRSVFLQMLS 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108864397|gb|ABA93689.2| phagocytosis and cell motility protein ELMO1, putative, expressed [Oryza sativa Japonica Group] gi|218185744|gb|EEC68171.1| hypothetical protein OsI_36117 [Oryza sativa Indica Group] gi|222615973|gb|EEE52105.1| hypothetical protein OsJ_33903 [Oryza sativa Japonica Group]

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/203 (74%), Positives = 173/203 (85%), Gaps = 1/203 (0%)

Query: 9   GCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERIC 68
           GC+A+R   P  S+        +A G  +SD+A+CG+P WIGK L+CVC KRKG YERIC
Sbjct: 20  GCLAVRAPVPRCSLGGGGGGGAAAMG-GSSDEASCGSPRWIGKSLSCVCIKRKGAYERIC 78

Query: 69  INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQ 128
           +NLTP Q ERL+RL+HRMKVYFD SR DHQEAL+ALW ATYPDQEL GLIS+QWK+MGWQ
Sbjct: 79  MNLTPVQEERLQRLRHRMKVYFDPSRRDHQEALKALWHATYPDQELQGLISEQWKDMGWQ 138

Query: 129 GKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLM 188
           G+DPSTDFRGAGFISLENLLFFAKTFS SFQRLL+KQ G RA WEYPFAVAGVNITFM+M
Sbjct: 139 GRDPSTDFRGAGFISLENLLFFAKTFSASFQRLLKKQCGNRATWEYPFAVAGVNITFMIM 198

Query: 189 QMLDLEATKPRTFVRSVFLQMLS 211
           QMLDL++TKPRTFVR+VF+QMLS
Sbjct: 199 QMLDLQSTKPRTFVRAVFIQMLS 221

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194693986|gb|ACF81077.1| unknown [Zea mays] gi|413920846|gb|AFW60778.1| hypothetical protein ZEAMMB73_514808 [Zea mays]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 172/203 (84%), Gaps = 4/203 (1%)

Query: 9   GCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERIC 68
           GC+A+RT  P  +I     +        +SD+ +CG+P WIG+GL+CVC KRKGTYERIC
Sbjct: 25  GCLAVRTSLPRCAIGAGGGSSLPG----SSDETSCGSPRWIGRGLSCVCIKRKGTYERIC 80

Query: 69  INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQ 128
           +NLTP Q ERL+RLKHRMKVYFD SR DHQEAL+ALW ATYPDQEL GLIS+QWK+MGWQ
Sbjct: 81  MNLTPVQEERLQRLKHRMKVYFDPSRRDHQEALKALWHATYPDQELEGLISEQWKDMGWQ 140

Query: 129 GKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLM 188
           G+DPSTDFRGAGFISLENLLFFAKTFS SFQRLL KQ G RA WEYPFAVAGVNITFM+M
Sbjct: 141 GRDPSTDFRGAGFISLENLLFFAKTFSASFQRLLNKQCGNRATWEYPFAVAGVNITFMIM 200

Query: 189 QMLDLEATKPRTFVRSVFLQMLS 211
           QMLDL++TKPRTFVR++F+QMLS
Sbjct: 201 QMLDLQSTKPRTFVRAIFIQMLS 223

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|253761537|ref|XP_002489147.1| hypothetical protein SORBIDRAFT_0019s004720 [Sorghum bicolor] gi|241947246|gb|EES20391.1| hypothetical protein SORBIDRAFT_0019s004720 [Sorghum bicolor]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 142/174 (81%), Positives = 162/174 (93%)

Query: 38  SDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDH 97
           +++A+CG+P WIG+GL+CVC KRKGTYERIC+NLTP Q ERL+RLKHRMKVYFD SR DH
Sbjct: 12  ANEASCGSPRWIGRGLSCVCIKRKGTYERICMNLTPVQEERLQRLKHRMKVYFDPSRRDH 71

Query: 98  QEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 157
           QEAL+ALW ATYPDQEL GLIS+QWK+MGWQG+DPSTDFRGAGFISLENLLFFAKTFS S
Sbjct: 72  QEALKALWHATYPDQELQGLISEQWKDMGWQGRDPSTDFRGAGFISLENLLFFAKTFSAS 131

Query: 158 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLS 211
           FQRLL+KQ G RA WEYPFAVAGVNITFM+MQMLDL++TKPRTFVR++F+QMLS
Sbjct: 132 FQRLLKKQCGNRATWEYPFAVAGVNITFMIMQMLDLQSTKPRTFVRAIFIQMLS 185

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79374282|ref|NP_564897.2| ELMO/CED-12 domain-containing protein [Arabidopsis thaliana] gi|332196519|gb|AEE34640.1| ELMO/CED-12 domain-containing protein [Arabidopsis thaliana]

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 160/220 (72%), Positives = 177/220 (80%), Gaps = 12/220 (5%)

Query: 1   MRVFRSQGGCVAIRTLSPSSSINRYSHAH-----GSAPG--PAASDDATCG-TPTW-IGK 51
           MRV R    CV  R LSP SS+ R   AH      S+ G   A ++DA+C  TP+W I K
Sbjct: 1   MRVVRI--SCVGTRHLSPPSSV-RGCEAHSDDVSASSAGLINADAEDASCSSTPSWRIKK 57

Query: 52  GLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD 111
            LTCVCF RK  YERIC NLTP Q ERL+RL+ RMK Y+DASRPDHQ+ALRALW+ATYPD
Sbjct: 58  SLTCVCFNRKRAYERICSNLTPLQEERLKRLRKRMKNYYDASRPDHQDALRALWSATYPD 117

Query: 112 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAD 171
           ++L  LISDQWK MGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL KQGGKRA 
Sbjct: 118 EKLQDLISDQWKNMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLNKQGGKRAA 177

Query: 172 WEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLS 211
           WEYPFAVAGVNITFM+MQMLDLEA+KPR+F+R VFLQMLS
Sbjct: 178 WEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLS 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51968574|dbj|BAD42979.1| unknown protein [Arabidopsis thaliana]

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 159/220 (72%), Positives = 177/220 (80%), Gaps = 12/220 (5%)

Query: 1   MRVFRSQGGCVAIRTLSPSSSINRYSHAH-----GSAPG--PAASDDATCG-TPTW-IGK 51
           MRV R    CV  R LSP SS+ R   AH      S+ G   A ++DA+C  TP+W I K
Sbjct: 24  MRVVRI--SCVGTRHLSPPSSV-RGCEAHSDDVSASSAGLINADAEDASCSSTPSWRIKK 80

Query: 52  GLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD 111
            LTCVCF RK  YERIC NLTP Q ERL+RL+ RMK Y+DASRPDHQ+ALRALW+ATYPD
Sbjct: 81  SLTCVCFNRKRAYERICSNLTPLQEERLKRLRKRMKNYYDASRPDHQDALRALWSATYPD 140

Query: 112 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAD 171
           ++L  LISDQWK MGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL KQGGKRA 
Sbjct: 141 EKLQDLISDQWKNMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLNKQGGKRAA 200

Query: 172 WEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLS 211
           W+YPFAVAGVNITFM+MQMLDLEA+KPR+F+R VFLQMLS
Sbjct: 201 WKYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLS 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2019544	281	AT1G67400 [Arabidopsis thalian	0.892	0.740	0.727	3.8e-78
TAIR|locus:2042456	266	AT2G44770 "AT2G44770" [Arabido	0.879	0.770	0.551	1.1e-57
TAIR|locus:2081947	266	AT3G60260 "AT3G60260" [Arabido	0.875	0.766	0.549	3.6e-57
TAIR|locus:2096389	323	AT3G03610 "AT3G03610" [Arabido	0.716	0.517	0.571	7.9e-46
TAIR|locus:2020753	265	AT1G03620 "AT1G03620" [Arabido	0.742	0.652	0.542	1e-45
TAIR|locus:2102276	213	AT3G43400 "AT3G43400" [Arabido	0.433	0.474	0.8	1.2e-43
DICTYBASE|DDB_G0280179	284	elmoB "engulfment and cell mot	0.472	0.387	0.336	3.2e-21
RGD|1587598	293	Elmod2 "ELMO/CED-12 domain con	0.798	0.634	0.310	4e-19
DICTYBASE|DDB_G0278051	977	elmoA "engulfment and cell mot	0.480	0.114	0.389	5.3e-19
FB|FBgn0037473	316	CG10068 [Drosophila melanogast	0.630	0.465	0.309	3.6e-18

TAIR|locus:2019544 AT1G67400 [Arabidopsis thaliana (taxid:3702)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 160/220 (72%), Positives = 177/220 (80%)

Query:     1 MRVFRSQGGCVAIRTLSPSSSINRYSHAHG-----SAPG--PAASDDATCG-TPTW-IGK 51
             MRV R    CV  R LSP SS+ R   AH      S+ G   A ++DA+C  TP+W I K
Sbjct:     1 MRVVRIS--CVGTRHLSPPSSV-RGCEAHSDDVSASSAGLINADAEDASCSSTPSWRIKK 57

Query:    52 GLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD 111
              LTCVCF RK  YERIC NLTP Q ERL+RL+ RMK Y+DASRPDHQ+ALRALW+ATYPD
Sbjct:    58 SLTCVCFNRKRAYERICSNLTPLQEERLKRLRKRMKNYYDASRPDHQDALRALWSATYPD 117

Query:   112 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAD 171
             ++L  LISDQWK MGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL KQGGKRA 
Sbjct:   118 EKLQDLISDQWKNMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLNKQGGKRAA 177

Query:   172 WEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLS 211
             WEYPFAVAGVNITFM+MQMLDLEA+KPR+F+R VFLQMLS
Sbjct:   178 WEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLS 217

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2042456 AT2G44770 "AT2G44770" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 118/214 (55%), Positives = 155/214 (72%)

Query:     7 QGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYER 66
             +G  VA+R +S    + R     GS    ++S +A  G+  W+G+GL+CVC +R+ +   
Sbjct:     5 EGSFVAVRRIS--QGLER-----GSVYN-SSSAEAVPGSAAWLGRGLSCVCAQRRDSDAN 56

Query:    67 ICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMG 126
                +LTP Q E L+ L++R+ V +D++ P HQEALR LW  ++P++ELHGLIS+QWKEMG
Sbjct:    57 STFDLTPAQEECLQSLQNRIDVAYDSTIPLHQEALRELWKLSFPEEELHGLISEQWKEMG 116

Query:   127 WQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFM 186
             WQGKDPSTDFRG GFISLENLL+FA+ F  SFQ LLRKQ G R+ WEYPFAVAG+N+TFM
Sbjct:   117 WQGKDPSTDFRGGGFISLENLLYFARNFQKSFQDLLRKQVGDRSVWEYPFAVAGINLTFM 176

Query:   187 LMQMLDLEATKPRTFVRSVFLQMLS-GRSLHDIV 219
             L+QMLDLEA KPRT V + FL+ LS   S  D++
Sbjct:   177 LIQMLDLEAVKPRTIVGATFLKFLSENESAFDLL 210

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2081947 AT3G60260 "AT3G60260" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 117/213 (54%), Positives = 148/213 (69%)

Query:     8 GGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERI 67
             G  VA+R +S    + R S  H S      S +   G+  W+G+GL+CVC + +    R 
Sbjct:     6 GSFVAVRRIS--QGLERGSVYHSS------SAEVVAGSAAWLGRGLSCVCVQGRDGDPRP 57

Query:    68 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGW 127
               +LTP Q E L+RL+ R+ V +D+S P HQEAL+ LW   +P++ELHG++SDQWKEMGW
Sbjct:    58 SFDLTPAQEECLQRLQSRIDVAYDSSIPQHQEALKDLWKLAFPEEELHGIVSDQWKEMGW 117

Query:   128 QGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFML 187
             QGKDPSTDFRG GFISLENLL+FA+ F  SF  LLRKQ G R+ WEYPFAVAG+NITFML
Sbjct:   118 QGKDPSTDFRGGGFISLENLLYFARKFPKSFHGLLRKQVGDRSVWEYPFAVAGINITFML 177

Query:   188 MQMLDLEATKPRTFVRSVFLQMLS-GRSLHDIV 219
             +QMLDLEA KPR+ V   FL+ LS   S  D++
Sbjct:   178 IQMLDLEAVKPRSIVGETFLRFLSVNESAFDLL 210

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2096389 AT3G03610 "AT3G03610" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 96/168 (57%), Positives = 120/168 (71%)

Query:    44 GTPTWIGKGLTCVCFKRKGTYERICIN-LTPQQAERLRRLKHRMKVYFDASRPDHQEALR 102
             G+ + +G+ L+   F + GT  R+    L+  Q ERLR +K R+++ FD SR +HQ+ALR
Sbjct:    90 GSGSLVGRFLSLPTFGQIGTGGRLLPPPLSMLQEERLRNIKRRIEIPFDGSRMEHQDALR 149

Query:   103 ALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL 162
              LW   YP +EL  L S+ WKEMGWQG DPSTDFRG G+ISLENL+FFAKT+  SFQRLL
Sbjct:   150 QLWRLAYPQRELPPLKSELWKEMGWQGTDPSTDFRGGGYISLENLIFFAKTYPESFQRLL 209

Query:   163 RKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQML 210
              KQ G RA+WEYPFAVAG+NI+FML QMLDL++ KP T     FL  L
Sbjct:   210 HKQDGTRAEWEYPFAVAGINISFMLAQMLDLQSGKPSTIAGIRFLGFL 257

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2020753 AT1G03620 "AT1G03620" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 96/177 (54%), Positives = 125/177 (70%)

Query:    35 PAASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASR 94
             P  +     GT +WIG GL     +R+   + +   L+P Q ERL+RL+ RM V FD +R
Sbjct:    26 PVVTATGMVGTRSWIG-GLFTRSNRRQD--KAVDYTLSPLQEERLQRLQDRMVVPFDETR 82

Query:    95 PDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTF 154
             PDHQE+L+ALW   +P+  L GL+++QWKEMGWQG +PSTDFRG GFI+LENLLF A+T+
Sbjct:    83 PDHQESLKALWNVAFPNVHLTGLVTEQWKEMGWQGPNPSTDFRGCGFIALENLLFSARTY 142

Query:   155 STSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEAT-KPRTFVRSVFLQML 210
                F+RLL KQ G RA WEYPFAVAG+NI+FML+QMLDL+   KP+      FL++L
Sbjct:   143 PVCFRRLLLKQRGDRAKWEYPFAVAGINISFMLIQMLDLQNNPKPKCLPGMNFLKLL 199

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2102276 AT3G43400 "AT3G43400" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
 Identities = 84/105 (80%), Positives = 92/105 (87%)

Query:   107 ATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 166
             +TY D++L  LISDQWK MGWQ KDPSTDFRG GFISLENL FFAKTFS    RLL+KQG
Sbjct:    71 STYADEKLQDLISDQWKNMGWQRKDPSTDFRGDGFISLENLRFFAKTFS----RLLKKQG 126

Query:   167 GKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLS 211
             GKRA WEYPFAVAGVNITFM+MQMLDLEA+KPR+F+R VFLQMLS
Sbjct:   127 GKRAAWEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLS 171

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

DICTYBASE|DDB_G0280179 elmoB "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 223 (83.6 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
 Identities = 38/113 (33%), Positives = 68/113 (60%)

Query:    80 RRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGA 139
             + ++ + K+ +D +  +H+ +L  LW A  PD      +S +W  +G+QG DP+TDFRG 
Sbjct:   108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGM 167

Query:   140 GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLD 192
             G + L+NL++F+   S   + +L+    K     YPFA+ G+NIT +++ ++D
Sbjct:   168 GILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLID 217

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

RGD|1587598 Elmod2 "ELMO/CED-12 domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 63/203 (31%), Positives = 104/203 (51%)

Query:     2 RVFRSQGGCVAIRTLSPSSSINRYSHAH--GSAPGPAASDDATCGTPTWIGKGLTCVCFK 59
             R+F + GG  A RT    +S+  YS +    +A   A SD   C       K    +C +
Sbjct:    33 RIFDTYGG--AQRTYRIENSLT-YSKSKVLQNATRVAESDLDRCIVDIMKEKK---ICPE 86

Query:    60 RKGTYERICINLTPQQAERLRRLKH-----RMKVYFDASRPDHQEALRALWAATYPDQEL 114
             +  +++ IC+     Q    R+L H     R K Y D++   H++ L  LW+   P ++L
Sbjct:    87 KDSSFQ-ICMRTCLLQITGYRQLYHDVENVRKKPY-DSANAQHEKLLLKLWSLLMPTKKL 144

Query:   115 HGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEY 174
                IS QW ++G+QG DP TDFRG G + L NL++F++ +++   ++L +    +  + Y
Sbjct:   145 KARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLGYSY 204

Query:   175 PFAVAGVNITFMLMQMLDLEATK 197
               A+ G+N+T M   +L  EA K
Sbjct:   205 --AIVGINLTEMAYSLLKSEALK 225

GO:0005096 "GTPase activator activity" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=ISO

GO:0050688 "regulation of defense response to virus" evidence=ISO

DICTYBASE|DDB_G0278051 elmoA "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 240 (89.5 bits), Expect = 5.3e-19, P = 5.3e-19
 Identities = 44/113 (38%), Positives = 70/113 (61%)

Query:    75 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 134
             Q  R + + +R  V F+    +H   L  LW+ TYP  +L   +S+QWK+MG+QG DP T
Sbjct:   362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421

Query:   135 DFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFML 187
             DFR  G   L+NL++FA+ ++  F++++  Q  ++ + EYP A AG+ +TF L
Sbjct:   422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQIDRK-EREYPTATAGIVLTFEL 473

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0050764 "regulation of phagocytosis" evidence=IMP

GO:0048870 "cell motility" evidence=IMP

GO:0045159 "myosin II binding" evidence=IPI

GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP

GO:0030587 "sorocarp development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

FB|FBgn0037473 CG10068 [Drosophila melanogaster (taxid:7227)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 48/155 (30%), Positives = 81/155 (52%)

Query:    80 RRLKHRMKVY----FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
             RRL H+++      +D+   DH++ L  LW    PD  L G ++ QW+++G+QG DP TD
Sbjct:   120 RRLMHQVEQLRAEKYDSDNLDHEQKLLRLWQLLMPDTPLTGRVTKQWQDIGFQGDDPKTD 179

Query:   136 FRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEA 195
             FRG G + LENLL+FA  ++ + + +L           Y +A+ G+N+T M   ++   A
Sbjct:   180 FRGMGMLGLENLLYFATAYNDAAKHVLLHS--MHPTLGYTYAIVGINLTSMAFNLVKTGA 237

Query:   196 TKPRTFVRSVFLQMLSGRSLHDIVMVKHCCIYCQF 230
              K   F   V        ++ D   + +C ++ +F
Sbjct:   238 AKTH-FYNLVVQHRQDFSTVEDFHKL-YCYLFFEF 270

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.4780.1 hypothetical protein (236 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
pfam04727	170	pfam04727, ELMO_CED12, ELMO/CED-12 family	1e-53

>gnl|CDD|218231 pfam04727, ELMO_CED12, ELMO/CED-12 family

 Score =  169 bits (431), Expect = 1e-53
 Identities = 52/130 (40%), Positives = 79/130 (60%)

Query: 77  ERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDF 136
             L  L+   K  FD   P+H+  L+ LW A +PD+ L   +S++WK++G+QG DP+TDF
Sbjct: 1   LTLNLLEKLRKTPFDLENPEHRRLLKTLWKALFPDEPLSSRVSEKWKDLGFQGDDPATDF 60

Query: 137 RGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEAT 196
           RG G + L NLL+FA+ +   FQ+LL +   + A+ EYPFAVA +N+T ML ++L +   
Sbjct: 61  RGTGLLGLLNLLYFAENYPDEFQKLLLESSHRPAEHEYPFAVASINVTSMLYELLRIGKL 120

Query: 197 KPRTFVRSVF 206
               +    F
Sbjct: 121 DQEDYKNYGF 130

This family represents a conserved domain which is found in a number of eukaryotic proteins including CED-12, ELMO I and ELMO II. ELMO1 is a component of signalling pathways that regulate phagocytosis and cell migration and is the mammalian orthologue of the C. elegans gene, ced-12. CED-12 is required for the engulfment of dying cells and cell migration. In mammalian cells, ELMO1 interacts with Dock180 as part of the CrkII/Dock180/Rac pathway responsible for phagocytosis and cell migration. ELMO1 is ubiquitously expressed, although its expression is highest in the spleen, an organ rich in immune cells. ELMO1 has a PH domain and a polyproline sequence motif at its C terminus which are not present in this alignment. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
KOG2998	302	consensus Uncharacterized conserved protein [Funct	100.0
PF04727	170	ELMO_CED12: ELMO/CED-12 family; InterPro: IPR00681	100.0
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	99.89

>KOG2998 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.6e-51  Score=365.32  Aligned_cols=207  Identities=44%  Similarity=0.741  Sum_probs=185.4

Q ss_pred             CCcEEEEe-ecCCCCccccccCCCCCCCCCCCccccccccchhhcc-----cccccccccCCCcccccccCCHHHHHHHH
Q 026779            7 QGGCVAIR-TLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGK-----GLTCVCFKRKGTYERICINLTPQQAERLR   80 (233)
Q Consensus         7 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~s~~~r-----~l~c~~~~~~~~~~~~~~~Lt~~Q~~~L~   80 (233)
                      .|..+|++ +.|.+.+  +.      .+.+.++.+...|+.+|+|+     ++.|.+.+.+..+..++..+.+.|++.++
T Consensus        41 ~g~~ra~~~e~sl~~~--~~------~~~~~ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~  112 (302)
T KOG2998|consen   41 EGASRAVRTETSLGQE--KP------LLGSTASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQ  112 (302)
T ss_pred             CCCcceeecchhhhhh--hh------hhhcccccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHH
Confidence            45566666 4444443  11      45666888999999999999     99999999999999999999999999999


Q ss_pred             HHHHhhccccCCCCHHHHHHHHHHHHHhCCCccCCCCChhhHhhhcCCCCCCCCCcccchhhhhhhHHHHHhhchHHHHH
Q 026779           81 RLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQR  160 (233)
Q Consensus        81 ~L~~r~~~~~D~~n~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GlLgL~~LlyFa~~~p~~f~~  160 (233)
                      .+++++++|||.+|++|+++|++||+.++|+++++++++++|++|||||+||+|||||+|+|||+||+||+++||+.+++
T Consensus       113 ~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~  192 (302)
T KOG2998|consen  113 RLEELRQEPYDSDNPDHEELLLDLWKLLYPDKELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQR  192 (302)
T ss_pred             HHHHHHhccCCCCChhHHHHHHHHHHHhCCCCccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCcCchHHHHHHHHHHHHHHhhhhcC-CCCchhhhHHHHHhcCCCchhhhhhHHHHHHHhh
Q 026779          161 LLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEAT-KPRTFVRSVFLQMLSGRSLHDIVMVKHCCIYCQF  230 (233)
Q Consensus       161 ll~~q~~~~~~~~yPFAvasINiT~~L~~~L~l~~~-k~~~~~~~~F~~l~~~~~~af~~~~l~C~~~~~~  230 (233)
                      ++.+|  +++.|+|||||||||||+|++++|++++. ++.++.+..|     ++++||  ..++|+.|+.|
T Consensus       193 lL~~s--~~~r~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~~~~~-----~~~~~F--~~lYc~af~~~  254 (302)
T KOG2998|consen  193 LLLKS--RHPRWEYPFAVVGINITFMAIQMLDLEALKKHFNNIVKVF-----ETEPAF--DLLYCYAFLEF  254 (302)
T ss_pred             HHHhc--CCCccCCceEEEeecHHHHHHHHHHhhhcccccccccccc-----ccHHHH--HHHHHHHHHHH
Confidence            99998  45669999999999999999999999998 5655556655     888998  99999999765

>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2

Probab=100.00  E-value=1.9e-41  Score=283.46  Aligned_cols=150  Identities=36%  Similarity=0.653  Sum_probs=132.8

Q ss_pred             HHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCccCCCCChhhHhhhcCCCCCCCCCcccchhhhhhhHHHHHhhchHH
Q 026779           78 RLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS  157 (233)
Q Consensus        78 ~L~~L~~r~~~~~D~~n~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GlLgL~~LlyFa~~~p~~  157 (233)
                      .|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++||+.
T Consensus         2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~   81 (170)
T PF04727_consen    2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE   81 (170)
T ss_pred             hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence            57889999999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHhhhhcCCCCchhhhHHHHH-hcCCCchhhhhhHHHHHHHhhh
Q 026779          158 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM-LSGRSLHDIVMVKHCCIYCQFY  231 (233)
Q Consensus       158 f~~ll~~q~~~~~~~~yPFAvasINiT~~L~~~L~l~~~k~~~~~~~~F~~l-~~~~~~af~~~~l~C~~~~~~~  231 (233)
                      +++|+.++..+.+..+||||+||||||.+|+++|++++.  .......+..+ +.+.+.+|  .++||.+|.+|.
T Consensus        82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~f--~elf~~~f~~f~  152 (170)
T PF04727_consen   82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGAL--DSEFYKRINFLSFFSSLEAF--EELFCACFQLFD  152 (170)
T ss_pred             HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhccc--CHHHhhcccccccCccHHHH--HHHHHHHHHHHH
Confidence            999999997776668999999999999999999999554  23333333333 55667777  899999998874

ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=99.89  E-value=3.7e-23  Score=198.88  Aligned_cols=160  Identities=21%  Similarity=0.359  Sum_probs=146.8

Q ss_pred             ccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCccCC-----------CCChhhHhhhcCCC-CCCCC
Q 026779           67 ICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELH-----------GLISDQWKEMGWQG-KDPST  134 (233)
Q Consensus        67 ~~~~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~Lw~~~~~~~~~~-----------~~~~~~Wk~lGFQg-~dP~T  134 (233)
                      .+++|+.+|...+..+..|+.++.|+.+++..+.++++-..+|.++..+           ....+..|++||.+ .||+.
T Consensus       274 ~~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~  353 (713)
T KOG2999|consen  274 RPIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQ  353 (713)
T ss_pred             chHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHH
Confidence            3569999999999999999999999999999999999999999875432           35568999999999 99999


Q ss_pred             Ccc--cchhhhhhhHHHHHhhchHHHHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHhhhhcCCCCchhhhHHHHHhcC
Q 026779          135 DFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSG  212 (233)
Q Consensus       135 DFR--g~GlLgL~~LlyFa~~~p~~f~~ll~~q~~~~~~~~yPFAvasINiT~~L~~~L~l~~~k~~~~~~~~F~~l~~~  212 (233)
                      ||-  .+|+|+|+||+||+++||+.+.+++.+++++.++++|||+.++|.+|+|||++|++  ++++++....|.+||+.
T Consensus       354 df~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrV--ge~p~E~~~df~pmfFt  431 (713)
T KOG2999|consen  354 DFGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRV--GEPPDELDRDFIPMFFT  431 (713)
T ss_pred             hcccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhc--CCCchhhcCccceeeec
Confidence            996  89999999999999999999999999999999999999999999999999999999  45678889999999999


Q ss_pred             CCchhhhhhHHHHHHHhh
Q 026779          213 RSLHDIVMVKHCCIYCQF  230 (233)
Q Consensus       213 ~~~af~~~~l~C~~~~~~  230 (233)
                      +|..|  +|+||+.--|+
T Consensus       432 hd~~F--ee~FciciqLl  447 (713)
T KOG2999|consen  432 HDTPF--EELFCICVQLL  447 (713)
T ss_pred             CCCcH--HHHHHHHHHHH
Confidence            99999  99999876443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 6/34 (17%)

Query: 75  QAERLRRLKHRMKVYFDASRPDHQEALRALWAAT 108
           + + L++L+  +K+Y D S P    AL A+  AT
Sbjct: 18  EKQALKKLQASLKLYADDSAP----AL-AI-KAT 45

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 27/263 (10%), Positives = 57/263 (21%), Gaps = 97/263 (36%)

Query: 48  WIGKGLTCVCFKRKGTYE---RICINLTPQQAERLRR----------LKHRMKVYFDASR 94
           W+       C   +   E   ++   + P    R             ++  ++       
Sbjct: 186 WLNLKN---CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KS 240

Query: 95  PDHQEAL--------RALWAA---------TYPDQELHGLISDQWKEMGWQGKDPSTDFR 137
             ++  L           W A         T   ++    ++D            S D  
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ----VTDF--LSAATTTHISLDHH 294

Query: 138 GAGFISLENLLFFAKTFSTSFQRL-----------------LRKQGGKRAD-WEYP---- 175
                  E      K      Q L                   + G    D W++     
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 176 -----------------------FAV--AGVNITFMLMQML--DLEATKPRTFVRSVFLQ 208
                                   +V     +I  +L+ ++  D+  +     V  +   
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 209 MLSGR-------SLHDIVMVKHC 224
            L  +       S+  I +    
Sbjct: 415 SLVEKQPKESTISIPSIYLELKV 437

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00