Citrus Sinensis ID: 026780

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccccccEEEcccEEEccccccccccccEEEEccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAQAMASmaglrgsshSQAVLEgsfqlsgpnrlnapsnsrvavarpgftvraqqasnepeTSRRAMLGLVAAGVASGSFVQAVladatpikvgpppppsgglpgtlnsdeprdldlplkerffiqplspAQAAERAKASAKDILNVKELidkkawpyvqNDLRLRASYLRYDLntiisakpkdeKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG
Flexible Loop (DISEMBL)
MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVavarpgftvraqqasnepeTSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVkelidkkawpyvqnDLRLRASYLRYDLNTIisakpkdekqsLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLndvlskvg
Low Complexity Region (SEG)
MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVgpppppsgglpgTLNSDEPRDLDLPLKERFFIQPLSPaqaaerakasaKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG
Disordered region (IsUnstruct)
*****************************************************************MLGLVAAGVASGSFVQAVLAD***********************************FFI****************KDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISA***********LTGKLFQTIGNLDHAAK*********YYA**************
Disordered Region (DISOPRED)
***A*ASMAGLRGSSHSQAVLEG*******************************************LGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFI**************SAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNT***************LTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG
Disordered Region (DISEMBL)
*****************QAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVR***********RRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPL************AKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG
Disordered Region (DISPRO)
****************SQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQA***PETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGT******RDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q41932	230	Oxygen-evolving enhancer	yes	no	0.978	0.991	0.710	7e-91
P12301	232	Oxygen-evolving enhancer	N/A	no	0.991	0.995	0.717	7e-83
Q9XFT3	224	Oxygen-evolving enhancer	no	no	0.952	0.991	0.696	3e-81
Q41048	217	Oxygen-evolving enhancer	N/A	no	0.922	0.990	0.621	2e-63
O22591	231	Oxygen-evolving enhancer	N/A	no	0.948	0.956	0.604	2e-62
Q41806	213	Oxygen-evolving enhancer	N/A	no	0.909	0.995	0.572	4e-56
Q0D5P8	217	Oxygen-evolving enhancer	yes	no	0.922	0.990	0.629	4e-55
P83646	217	Oxygen-evolving enhancer	N/A	no	0.922	0.990	0.629	4e-55
Q9SGH4	220	PsbQ-like protein 2, chlo	no	no	0.815	0.863	0.273	1e-12
Q9XI73	190	PsbQ-like protein 1, chlo	no	no	0.480	0.589	0.276	2e-10

>sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2

 Score =  333 bits (854), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 167/235 (71%), Positives = 199/235 (84%), Gaps = 7/235 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA--RPGFTVRAQQASNE 58
           MAQA+ SMAGLRG+S  QAVLEGS Q++G NRLN    SRV+V   R G  +RAQQ  + 
Sbjct: 1   MAQAVTSMAGLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSV 55

Query: 59  PETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
           PE+SRR+++GLVAAG+A GSFV+AV A+A PIKVG PP PSGGLPGT NSD+ RD  L L
Sbjct: 56  PESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLAL 115

Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
           K+RF+IQPLSP +AA RAK SAK+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+IS
Sbjct: 116 KDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVIS 175

Query: 179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           AKPK+EKQSLK+LT KLFQTI NLD+AA+ KS+P+AEKYY+ETVS+LN+VL+K+G
Sbjct: 176 AKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230

Required for photosystem II assembly/stability and photoautotrophic growth under low light conditions.
Arabidopsis thaliana (taxid: 3702)

>sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1

 Score =  306 bits (784), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 168/234 (71%), Positives = 196/234 (83%), Gaps = 3/234 (1%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
           MAQAMASMAGLRG+S  QAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E E
Sbjct: 1   MAQAMASMAGLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAE 58

Query: 61  TSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL-K 119
           TSRRAMLG VAAG+ASGSFV+AVLA+A PI VGPPPP SGGLPGT NSD+ RD  LP  K
Sbjct: 59  TSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTK 118

Query: 120 ERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISA 179
           +RF++QPL P +AA+RAK SA +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISA
Sbjct: 119 DRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISA 178

Query: 180 KPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           KPKDEK+SL+ LT KLF +I NLDHAAKIKS  EAEKYY +TVS +N+VL+K+G
Sbjct: 179 KPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 232

Spinacia oleracea (taxid: 3562)

>sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3

 Score =  301 bits (770), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/231 (69%), Positives = 188/231 (81%), Gaps = 9/231 (3%)

Query: 5   MASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA-RPGFTVRAQQASNEPETSR 63
           MASM GL G+S   AVLEGS +++G +RLN   + RVAVA R    VRAQQ+    ETSR
Sbjct: 1   MASMGGLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSR 53

Query: 64  RAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLP-GTLNSDEPRDLDLPLKERF 122
           R+++GLVAAG+A GSFVQAVLADA  IKVGPPP PSGGLP GT NSD+ RD  L LK+RF
Sbjct: 54  RSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRF 113

Query: 123 FIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK 182
           ++QPL P +AA RAK SAKDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPK
Sbjct: 114 YLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPK 173

Query: 183 DEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           DEK+SLK+LT KLF TI NLD+AAK KS  +AEKYYAETVS LN+VL+K+G
Sbjct: 174 DEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 224

Required for photosystem II assembly/stability and photoautotrophic growth under low light conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1

 Score =  241 bits (616), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/235 (62%), Positives = 172/235 (73%), Gaps = 20/235 (8%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQ-QASNEP 59
           MAQAMASM GL     SQ VL        P+R  A S +R AV      VRA  +     
Sbjct: 1   MAQAMASMTGL-----SQGVL--------PSR-RADSRTRTAV----VIVRASAEGDAVA 42

Query: 60  ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
           +  RRA++GLVA G+  G+  QA  A+    IK+G PPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 43  QAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPL 102

Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
           KERF++QPL PA+AA R K SA+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I+
Sbjct: 103 KERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIA 162

Query: 179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           +KPK+EK+SLK LTGKLF TI +LDHAAKIKSTPEAEKY+A T   L DVL+K+G
Sbjct: 163 SKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKLG 217

Zea mays (taxid: 4577)

>sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1

 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 147/243 (60%), Positives = 178/243 (73%), Gaps = 22/243 (9%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRA-------- 52
           MAQAMAS            +LEGS QL   +  ++ S+     A   F VRA        
Sbjct: 1   MAQAMAS-----------GLLEGSLQLMSGSNRSSSSSRTRGPAGV-FIVRAQQQEQQQG 48

Query: 53  -QQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEP 111
              ++ +P+++RRAMLGLVA G+AS SFVQAVLA+A PIKVG PPPPSGGL GTLNSDE 
Sbjct: 49  MSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEA 108

Query: 112 RDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRY 171
           RDL LPLKERF+IQPLSP +AA+R + SAK+I+ VK+ ID+K      NDLRLRASYLRY
Sbjct: 109 RDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRY 168

Query: 172 DLNTIISAKPKDEKQSLKNLT-GKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLS 230
           DLNT+IS+KPK++KQSLK  + GKLFQ I NLD+AAK+KS P+AEKYYA+ VSTLNDVLS
Sbjct: 169 DLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEKYYADAVSTLNDVLS 228

Query: 231 KVG 233
           K+G
Sbjct: 229 KIG 231

Onobrychis viciifolia (taxid: 3882)

>sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1

 Score =  218 bits (554), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 134/234 (57%), Positives = 160/234 (68%), Gaps = 22/234 (9%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
           MAQAMASM GL     SQ V   +          A S +R AV     +    + +  P 
Sbjct: 1   MAQAMASMTGL-----SQGVCPAA----------ADSRTRTAVVVVRASAEGDRCAGGPR 45

Query: 61  TSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPLK 119
             R      + A  +S    QAV A+    IK+G PPPPSGGLPGTLNSD+ RD DLPLK
Sbjct: 46  CDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLK 99

Query: 120 ERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISA 179
           ERF++QPL PA+A  R K SA+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++
Sbjct: 100 ERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIAS 159

Query: 180 KPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           KPK+EK+SLK LTGKLF TI +LDHAAK+KSTPEAEKY+A T   L DVL+K+G
Sbjct: 160 KPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKLG 213

Zea mays (taxid: 4577)

>sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1

 Score =  214 bits (545), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 148/235 (62%), Positives = 174/235 (74%), Gaps = 20/235 (8%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQASNEP 59
           MAQAMASM GL     SQ V     QL +GP R  A   SR+AV R        Q     
Sbjct: 1   MAQAMASMTGL-----SQGV-----QLPAGPRR--AGGRSRLAVVRADAAAADVQ----- 43

Query: 60  ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
            T RRA+LGLVA G+A G+  QA LA+A  PIK+GPPPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 44  -TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPL 102

Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
           +ERF++QPL PA+AA RAK SA+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I+
Sbjct: 103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVIN 162

Query: 179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           +KPKDEK+ LK+LTGKLF TI  LDHAAKIKS  EAEKYY  T S L DVL+K+G
Sbjct: 163 SKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2

 Score =  214 bits (545), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 148/235 (62%), Positives = 174/235 (74%), Gaps = 20/235 (8%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQASNEP 59
           MAQAMASM GL     SQ V     QL +GP R  A   SR+AV R        Q     
Sbjct: 1   MAQAMASMTGL-----SQGV-----QLPAGPRR--AGGRSRLAVVRADAAAADVQ----- 43

Query: 60  ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
            T RRA+LGLVA G+A G+  QA LA+A  PIK+GPPPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 44  -TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPL 102

Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
           +ERF++QPL PA+AA RAK SA+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I+
Sbjct: 103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVIN 162

Query: 179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           +KPKDEK+ LK+LTGKLF TI  LDHAAKIKS  EAEKYY  T S L DVL+K+G
Sbjct: 163 SKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SGH4|PQL2_ARATH PsbQ-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PQL2 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 11/201 (5%)

Query: 39  SRVAVARPGFTVRAQQASNEPET---SRRAMLGLVAAGVASGSFVQ--AVLADATPIKVG 93
           SR      GF  R  +   EP++   +RR  LG   +   +G   +    LA      + 
Sbjct: 23  SRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSIGLTGILGENNVSLAQDNGFWID 82

Query: 94  PPPPPSGGLPGTLNS--DEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELID 151
            P P    +P   N+  +E       +K+  ++  +       R K +A D+L +++LI 
Sbjct: 83  GPLP----IPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIG 138

Query: 152 KKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKST 211
                YV+  LRL++++L YD + +ISA   ++KQ L +L  +LF     L+ AAK K+ 
Sbjct: 139 PDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNL 198

Query: 212 PEAEKYYAETVSTLNDVLSKV 232
            E E  Y +T   L +V++++
Sbjct: 199 AETESCYKDTKFLLQEVMTRM 219

Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI73|PQL1_ARATH PsbQ-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PQL1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 63/112 (56%)

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           +KE++F+  LSP  AA R K +A+ + +++E++D  +W YV   +RL+ +YL  DL   +
Sbjct: 75  IKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAM 134

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 229
           +  P+  +        +L + +  LD   +     E+  YY +T+ ++++V+
Sbjct: 135 NILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVV 186

Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
118486390	234	unknown [Populus trichocarpa]	0.991	0.987	0.817	2e-97
224116338	234	hypothetical protein POPTRDRAFT_834003 [	0.991	0.987	0.809	2e-96
224078826	234	hypothetical protein POPTRDRAFT_831063 [	0.991	0.987	0.817	6e-94
388507526	234	unknown [Lotus japonicus]	0.991	0.987	0.728	5e-90
225469185	231	PREDICTED: oxygen-evolving enhancer prot	0.991	1.0	0.824	4e-89
15234637	230	oxygen-evolving enhancer protein 3-2 [Ar	0.978	0.991	0.710	4e-89
351724301	234	uncharacterized protein LOC100306034 [Gl	0.991	0.987	0.771	1e-88
449454700	231	PREDICTED: oxygen-evolving enhancer prot	0.991	1.0	0.768	7e-88
296083535	227	unnamed protein product [Vitis vinifera]	0.974	1.0	0.820	1e-86
351727615	232	uncharacterized protein LOC100499794 [Gl	0.978	0.982	0.763	2e-86

>gi|118486390|gb|ABK95035.1| unknown [Populus trichocarpa]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 193/236 (81%), Positives = 206/236 (87%), Gaps = 5/236 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRL-NAPSNS-RVAVARPGFTVRAQQ-ASN 57
           MAQAMASMAGLRG+S  QAVLEGS QLSG NRL   PSN+ RVAVA PG TV+AQQ  S 
Sbjct: 1   MAQAMASMAGLRGTS--QAVLEGSLQLSGSNRLLKVPSNTARVAVALPGLTVKAQQQVSA 58

Query: 58  EPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
           EPETSRR MLGLVAAG+ASGSFVQAVLA A PIKVGPPP PSGGL GTLNSDE RDL LP
Sbjct: 59  EPETSRRGMLGLVAAGLASGSFVQAVLAAALPIKVGPPPAPSGGLTGTLNSDEARDLVLP 118

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           LKERFF+QPL PA AA RAK SAK+I+ VK LIDKKAWPYVQNDLRL+ASYLRYDLNT+I
Sbjct: 119 LKERFFLQPLPPAAAAARAKESAKEIIGVKGLIDKKAWPYVQNDLRLKASYLRYDLNTVI 178

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           SAK KDEK+SLK LTGKLF TIGNLDHAAKIKSTPEAEKYYA+TVS LNDVL+K+G
Sbjct: 179 SAKSKDEKKSLKELTGKLFDTIGNLDHAAKIKSTPEAEKYYAQTVSALNDVLAKLG 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116338|ref|XP_002317273.1| hypothetical protein POPTRDRAFT_834003 [Populus trichocarpa] gi|222860338|gb|EEE97885.1| hypothetical protein POPTRDRAFT_834003 [Populus trichocarpa]

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/236 (80%), Positives = 205/236 (86%), Gaps = 5/236 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRL-NAPSNS-RVAVARPGFTVRAQQ-ASN 57
           MAQAMASMAGLRG+S  QAVLEGS QLSG NRL   PSN+ RVAVA PG TV+AQQ  S 
Sbjct: 1   MAQAMASMAGLRGTS--QAVLEGSLQLSGSNRLLKVPSNTARVAVALPGLTVKAQQQVSA 58

Query: 58  EPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
           EPETSRR MLGLVAAG+ASGSFVQAVLA A PIKVGPPP PSGGL GTLNSDE RDL LP
Sbjct: 59  EPETSRRGMLGLVAAGLASGSFVQAVLAAALPIKVGPPPAPSGGLTGTLNSDEARDLVLP 118

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           LKERFF+QPL PA AA RAK SAK+I+ VK LIDKKAWPYVQNDLRL++SYLRYDLNT+I
Sbjct: 119 LKERFFLQPLPPAAAAARAKESAKEIIGVKGLIDKKAWPYVQNDLRLKSSYLRYDLNTVI 178

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           SAK KDEK+SLK LTGKLF TI NLDHAAKIKSTPEAEKYYA+TVS LNDVL+K+G
Sbjct: 179 SAKSKDEKKSLKELTGKLFDTISNLDHAAKIKSTPEAEKYYAQTVSALNDVLAKLG 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078826|ref|XP_002305643.1| hypothetical protein POPTRDRAFT_831063 [Populus trichocarpa] gi|118486762|gb|ABK95216.1| unknown [Populus trichocarpa] gi|222848607|gb|EEE86154.1| hypothetical protein POPTRDRAFT_831063 [Populus trichocarpa]

 Score =  349 bits (895), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 193/236 (81%), Positives = 209/236 (88%), Gaps = 5/236 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNR-LNAPSN-SRVAVARPGFTVRA-QQASN 57
           MAQAMASMAGLRG+  SQAVLEGS QLSG NR LN PSN +RVAVARPG  VRA QQ S 
Sbjct: 1   MAQAMASMAGLRGT--SQAVLEGSLQLSGSNRLLNVPSNTTRVAVARPGLAVRAQQQVSG 58

Query: 58  EPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
           E ETSRRAMLGLVAAG+ASGSFVQ VLADA PIK+GPPPPPSGGLPGTLNSDE RD DLP
Sbjct: 59  ELETSRRAMLGLVAAGLASGSFVQVVLADALPIKLGPPPPPSGGLPGTLNSDEARDFDLP 118

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           LK+RFF+QPL PA+AA RAK SAKDIL VK LID+KAWPYVQNDLRL+A YLR+DLNT+I
Sbjct: 119 LKQRFFLQPLPPAEAAVRAKESAKDILGVKSLIDQKAWPYVQNDLRLKAGYLRFDLNTVI 178

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           SAK KDEK+SLK LTGKLF TI NLDHAAKIKSTPEAEKYYA+TVS+LNDVL+K+G
Sbjct: 179 SAKSKDEKKSLKELTGKLFDTISNLDHAAKIKSTPEAEKYYAQTVSSLNDVLAKLG 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507526|gb|AFK41829.1| unknown [Lotus japonicus]

 Score =  336 bits (861), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 172/236 (72%), Positives = 201/236 (85%), Gaps = 5/236 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLN---APSNSRVAVARPGFTVRAQQASN 57
           MAQAMASMAGLRGSS  QAVLEGS QLSG  RLN   + S+S   V+    TVRA Q  +
Sbjct: 1   MAQAMASMAGLRGSS--QAVLEGSLQLSGSTRLNIHSSSSSSNSRVSSTRLTVRANQVPS 58

Query: 58  EPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
           EP++SRRA++GLVAAG+A+GSFVQAVLA+A  IKVG PPP SGGLPGTLNSDE RDL+LP
Sbjct: 59  EPQSSRRAVMGLVAAGLATGSFVQAVLAEAKSIKVGGPPPLSGGLPGTLNSDEARDLELP 118

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           L+ERFF+QPLSP +AA+RAK SAK+I+ VK+ ID+KAWPYVQNDLRLRASYLRYDLNT+I
Sbjct: 119 LEERFFLQPLSPTEAAQRAKESAKEIVAVKKFIDQKAWPYVQNDLRLRASYLRYDLNTVI 178

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           S+KP D+KQSLK L+ KLFQ I NLD+AAK+KS+P+AEKYYAE VSTLNDVL K+G
Sbjct: 179 SSKPTDQKQSLKELSAKLFQDISNLDYAAKVKSSPQAEKYYAEAVSTLNDVLGKLG 234

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469185|ref|XP_002275624.1| PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Vitis vinifera]

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 192/233 (82%), Positives = 209/233 (89%), Gaps = 2/233 (0%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
           MAQAMASMAGLRGS  SQAVLEGS Q+SG  RL++ S+SRV VARPGF+VRAQQA  EPE
Sbjct: 1   MAQAMASMAGLRGS--SQAVLEGSLQISGSTRLSSGSSSRVGVARPGFSVRAQQAPVEPE 58

Query: 61  TSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKE 120
           TSRRA+LGLVAAG+ASGSFVQAVLA+A  IKVGPPPPPSGGLPGTLNSDE RDLDLPLK+
Sbjct: 59  TSRRAVLGLVAAGLASGSFVQAVLAEAKSIKVGPPPPPSGGLPGTLNSDEARDLDLPLKD 118

Query: 121 RFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAK 180
           RFFIQPL PA AA RAK SAKDI+ VK LIDKKAWPYVQ DLRL+A YLRYDLNT+ISAK
Sbjct: 119 RFFIQPLPPAAAAVRAKESAKDIVGVKTLIDKKAWPYVQMDLRLKAEYLRYDLNTVISAK 178

Query: 181 PKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           PKDEK+SLK LTGKLF TI +LDHAAKIKS+P+AEKYYA TVSTLNDVLSK+G
Sbjct: 179 PKDEKKSLKELTGKLFSTISDLDHAAKIKSSPDAEKYYAATVSTLNDVLSKIG 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234637|ref|NP_192427.1| oxygen-evolving enhancer protein 3-2 [Arabidopsis thaliana] gi|18206249|sp|Q41932.2|PSBQ2_ARATH RecName: Full=Oxygen-evolving enhancer protein 3-2, chloroplastic; Short=OEE3; AltName: Full=16 kDa subunit of oxygen evolving system of photosystem II; AltName: Full=OEC 16 kDa subunit; Flags: Precursor gi|13926288|gb|AAK49613.1|AF372897_1 AT4g05180/C17L7_100 [Arabidopsis thaliana] gi|7267278|emb|CAB81060.1| Oxygen-evolving enhancer protein 3 precursor-like protein [Arabidopsis thaliana] gi|21593587|gb|AAM65554.1| Oxygen-evolving enhancer protein 3 precursor-like protein [Arabidopsis thaliana] gi|23308489|gb|AAN18214.1| At4g05180/C17L7_100 [Arabidopsis thaliana] gi|332657088|gb|AEE82488.1| oxygen-evolving enhancer protein 3-2 [Arabidopsis thaliana]

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 167/235 (71%), Positives = 199/235 (84%), Gaps = 7/235 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA--RPGFTVRAQQASNE 58
           MAQA+ SMAGLRG+S  QAVLEGS Q++G NRLN    SRV+V   R G  +RAQQ  + 
Sbjct: 1   MAQAVTSMAGLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSV 55

Query: 59  PETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
           PE+SRR+++GLVAAG+A GSFV+AV A+A PIKVG PP PSGGLPGT NSD+ RD  L L
Sbjct: 56  PESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLAL 115

Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
           K+RF+IQPLSP +AA RAK SAK+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+IS
Sbjct: 116 KDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVIS 175

Query: 179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           AKPK+EKQSLK+LT KLFQTI NLD+AA+ KS+P+AEKYY+ETVS+LN+VL+K+G
Sbjct: 176 AKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724301|ref|NP_001236541.1| uncharacterized protein LOC100306034 [Glycine max] gi|255627343|gb|ACU14016.1| unknown [Glycine max]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 182/236 (77%), Positives = 204/236 (86%), Gaps = 5/236 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA-RPGFTVRA--QQASN 57
           MAQAMASMAGLRGS  SQAVLEGS Q+SG  RLN  S SRVA A R GFTVR   QQ S 
Sbjct: 1   MAQAMASMAGLRGS--SQAVLEGSLQVSGSTRLNVGSGSRVASATRAGFTVRVQQQQVSG 58

Query: 58  EPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
           E ++SRRA+L LVAAG+A+GSFVQAVLAD   IKVGPPPPPSGGLPGTLNSDE RDL LP
Sbjct: 59  EVQSSRRAVLSLVAAGLATGSFVQAVLADTKSIKVGPPPPPSGGLPGTLNSDEARDLQLP 118

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           LK+RFF+QPLSP +AA+RAK SAK+I+ VK+LI+KKAWPYVQNDLRLRA YLR+DLNT+I
Sbjct: 119 LKDRFFLQPLSPTEAAQRAKESAKEIVGVKKLIEKKAWPYVQNDLRLRAEYLRFDLNTVI 178

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           + KPKDEK+SLK LTGKLFQ I NLDHAAKIKS+PEAEKYYA TVS+LNDVL+K+G
Sbjct: 179 AGKPKDEKKSLKELTGKLFQDISNLDHAAKIKSSPEAEKYYAATVSSLNDVLAKLG 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454700|ref|XP_004145092.1| PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic-like [Cucumis sativus] gi|449471473|ref|XP_004153319.1| PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic-like [Cucumis sativus] gi|449488405|ref|XP_004158022.1| PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic-like [Cucumis sativus]

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 179/233 (76%), Positives = 203/233 (87%), Gaps = 2/233 (0%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
           MAQAMASMAGL GS  SQAVLEGS Q+SG +RL+  S  R +V R G  ++AQQ   EPE
Sbjct: 1   MAQAMASMAGLCGS--SQAVLEGSLQISGSSRLSVASTIRPSVPRSGLIIKAQQVPVEPE 58

Query: 61  TSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKE 120
           TSRRA+LGLVAAG+ASGSFVQAVLA+A PIKVGPPPPPSGGLPGTLNSDEPRDLDLPLK+
Sbjct: 59  TSRRAVLGLVAAGLASGSFVQAVLAEAKPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKD 118

Query: 121 RFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAK 180
           RFF+QP SPA A  RAK SAKDI+NVK  I+KKAWP+V++DLRL+A YLRYDL TIISAK
Sbjct: 119 RFFLQPQSPAMAVARAKESAKDIINVKGQIEKKAWPFVRDDLRLKAEYLRYDLKTIISAK 178

Query: 181 PKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           PK+EKQ+LK+LTGKLFQ I NLD+AAKIKS+ EAEKYYA+TVSTLNDVLSK+G
Sbjct: 179 PKEEKQALKDLTGKLFQDINNLDYAAKIKSSSEAEKYYAQTVSTLNDVLSKIG 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083535|emb|CBI23524.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/229 (82%), Positives = 205/229 (89%), Gaps = 2/229 (0%)

Query: 5   MASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRR 64
           MASMAGLRGS  SQAVLEGS Q+SG  RL++ S+SRV VARPGF+VRAQQA  EPETSRR
Sbjct: 1   MASMAGLRGS--SQAVLEGSLQISGSTRLSSGSSSRVGVARPGFSVRAQQAPVEPETSRR 58

Query: 65  AMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFI 124
           A+LGLVAAG+ASGSFVQAVLA+A  IKVGPPPPPSGGLPGTLNSDE RDLDLPLK+RFFI
Sbjct: 59  AVLGLVAAGLASGSFVQAVLAEAKSIKVGPPPPPSGGLPGTLNSDEARDLDLPLKDRFFI 118

Query: 125 QPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDE 184
           QPL PA AA RAK SAKDI+ VK LIDKKAWPYVQ DLRL+A YLRYDLNT+ISAKPKDE
Sbjct: 119 QPLPPAAAAVRAKESAKDIVGVKTLIDKKAWPYVQMDLRLKAEYLRYDLNTVISAKPKDE 178

Query: 185 KQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           K+SLK LTGKLF TI +LDHAAKIKS+P+AEKYYA TVSTLNDVLSK+G
Sbjct: 179 KKSLKELTGKLFSTISDLDHAAKIKSSPDAEKYYAATVSTLNDVLSKIG 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727615|ref|NP_001236143.1| uncharacterized protein LOC100499794 [Glycine max] gi|255626655|gb|ACU13672.1| unknown [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/237 (76%), Positives = 201/237 (84%), Gaps = 9/237 (3%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVA-VARPGFTVRAQQAS--- 56
           MAQAMASM  LRGS  SQAVLEGS    G  RLN  S SRVA V R GFTVRAQQ     
Sbjct: 1   MAQAMASMTSLRGS--SQAVLEGSL---GSTRLNVGSGSRVASVTRAGFTVRAQQQQVNG 55

Query: 57  NEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDL 116
            E ++SRRA+L LVAAG+ +GSFVQAVLADA PIKVGPPPPPSGGLPGTLNSDEPRDL L
Sbjct: 56  GEVQSSRRAVLSLVAAGLTTGSFVQAVLADAKPIKVGPPPPPSGGLPGTLNSDEPRDLKL 115

Query: 117 PLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTI 176
           PLK+RFF+QPLSP  AA+RAK SAK+I+ VK+LI+KKAWPYVQNDLRLRA YLR+DLNT+
Sbjct: 116 PLKDRFFLQPLSPTDAAQRAKESAKEIVGVKKLIEKKAWPYVQNDLRLRAEYLRFDLNTV 175

Query: 177 ISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           I+AKPKDEK+SLK LTGKLFQ I NLDHAAKIKS+PEAEKYYA TVS+LNDVL+K+G
Sbjct: 176 IAAKPKDEKKSLKELTGKLFQDISNLDHAAKIKSSPEAEKYYAATVSSLNDVLAKLG 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2115703	230	PSBQ-2 "photosystem II subunit	0.978	0.991	0.638	7.7e-71
TAIR|locus:2127393	224	PSBQA "photosystem II subunit	0.952	0.991	0.619	4.2e-63
UNIPROTKB|P83646	217	OsI_025465 "Oxygen-evolving en	0.922	0.990	0.553	9.9e-55
TAIR|locus:2096707	220	PnsL3 "Photosynthetic NDH subc	0.390	0.413	0.351	2.8e-11
TAIR|locus:2035775	190	PnsL2 "Photosynthetic NDH subc	0.480	0.589	0.232	2.3e-09
TAIR|locus:1009023157	187	PQL3 "PsbQ-like 3" [Arabidopsi	0.394	0.491	0.311	1.2e-08

TAIR|locus:2115703 PSBQ-2 "photosystem II subunit Q-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 150/235 (63%), Positives = 181/235 (77%)

Query:     1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA--RPGFTVRAQQASNE 58
             MAQA+ SMAGLRG+S  QAVLEGS Q++G NRLN    SRV+V   R G  +RAQQ  + 
Sbjct:     1 MAQAVTSMAGLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSV 55

Query:    59 PETSRRAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPL 118
             PE+SRR+++GLVAAG+A GSFV+AV A+A PIKV            T NSD+ RD  L L
Sbjct:    56 PESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLAL 115

Query:   119 KERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
             K+RF+IQPLSP           K+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+IS
Sbjct:   116 KDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVIS 175

Query:   179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
             AKPK+EKQSLK+LT KLFQTI NLD+AA+ KS+P+AEKYY+ETVS+LN+VL+K+G
Sbjct:   176 AKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2127393 PSBQA "photosystem II subunit QA" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 143/231 (61%), Positives = 169/231 (73%)

Query:     5 MASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA-RPGFTVRAQQASNEPETSR 63
             MASM GL G+S   AVLEGS +++G +RLN   + RVAVA R    VRAQQ+    ETSR
Sbjct:     1 MASMGGLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSR 53

Query:    64 RAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXX-XXTLNSDEPRDLDLPLKERF 122
             R+++GLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD  L LK+RF
Sbjct:    54 RSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRF 113

Query:   123 FIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK 182
             ++QPL P           KDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPK
Sbjct:   114 YLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPK 173

Query:   183 DEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
             DEK+SLK+LT KLF TI NLD+AAK KS  +AEKYYAETVS LN+VL+K+G
Sbjct:   174 DEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 224

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

UNIPROTKB|P83646 OsI_025465 "Oxygen-evolving enhancer protein 3, chloroplastic" [Oryza sativa Indica Group (taxid:39946)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 130/235 (55%), Positives = 158/235 (67%)

Query:     1 MAQAMASMAGLRGSSHSQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQASNEP 59
             MAQAMASM GL     SQ V     QL +GP R  A   SR+AV      VRA  A+ + 
Sbjct:     1 MAQAMASMTGL-----SQGV-----QLPAGPRR--AGGRSRLAV------VRADAAAADV 42

Query:    60 ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPL 118
             +T RRA+LGLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL
Sbjct:    43 QTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPL 102

Query:   119 KERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
             +ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I+
Sbjct:   103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVIN 162

Query:   179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
             +KPKDEK+ LK+LTGKLF TI  LDHAAKIKS  EAEKYY  T S L DVL+K+G
Sbjct:   163 SKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217

GO:0009536 "plastid" evidence=IC

TAIR|locus:2096707 PnsL3 "Photosynthetic NDH subcomplex L 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 32/91 (35%), Positives = 55/91 (60%)

Query:   142 DILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGN 201
             D+L +++LI      YV+  LRL++++L YD + +ISA   ++KQ L +L  +LF     
Sbjct:   129 DLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRLFDNFEK 188

Query:   202 LDHAAKIKSTPEAEKYYAETVSTLNDVLSKV 232
             L+ AAK K+  E E  Y +T   L +V++++
Sbjct:   189 LEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;TAS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

GO:0009344 "nitrite reductase complex [NAD(P)H

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2035775 PnsL2 "Photosynthetic NDH subcomplex L 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 26/112 (23%), Positives = 57/112 (50%)

Query:   118 LKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
             +KE++F+  LSP           + + +++E++D  +W YV   +RL+ +YL  DL   +
Sbjct:    75 IKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAM 134

Query:   178 SAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 229
             +  P+  +        +L + +  LD   +     E+  YY +T+ ++++V+
Sbjct:   135 NILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVV 186

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

GO:0009344 "nitrite reductase complex [NAD(P)H

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:1009023157 PQL3 "PsbQ-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 29/93 (31%), Positives = 52/93 (55%)

Query:   141 KDILNVKEL-IDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTI 199
             ++I  +KE+ I+KK W     +LR  AS ++ D   II AKP  ++   ++L   LF +I
Sbjct:    95 ENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPKDRPLFRSLYSSLFNSI 154

Query:   200 GNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKV 232
               +D+AA+     +  +YY   V+ L+D+  ++
Sbjct:   155 TKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.351    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       210   0.00080  112 3  11 23  0.41    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  133 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.12u 0.10s 16.22t   Elapsed:  00:00:00
  Total cpu time:  16.12u 0.11s 16.23t   Elapsed:  00:00:00
  Start:  Sat May 11 05:31:11 2013   End:  Sat May 11 05:31:11 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P83646	PSBQ_ORYSI	No assigned EC number	0.6297	0.9227	0.9907	N/A	no
O22591	PSBQ_ONOVI	No assigned EC number	0.6049	0.9484	0.9567	N/A	no
P12301	PSBQ_SPIOL	No assigned EC number	0.7179	0.9914	0.9956	N/A	no
Q0D5P8	PSBQ_ORYSJ	No assigned EC number	0.6297	0.9227	0.9907	yes	no
Q41932	PSBQ2_ARATH	No assigned EC number	0.7106	0.9785	0.9913	yes	no
Q41806	PSBQ2_MAIZE	No assigned EC number	0.5726	0.9098	0.9953	N/A	no
Q41048	PSBQ1_MAIZE	No assigned EC number	0.6212	0.9227	0.9907	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XI0110 SubName- Full=Putative uncharacterized protein; (234 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
pfam05757	203	pfam05757, PsbQ, Oxygen evolving enhancer protein	9e-96
PLN02729	220	PLN02729, PLN02729, PSII-Q subunit	4e-20
PLN02956	185	PLN02956, PLN02956, PSII-Q subunit	6e-18
PLN02999	190	PLN02999, PLN02999, photosystem II oxygen-evolving	2e-12
TIGR03042	142	TIGR03042, PS_II_psbQ_bact, photosystem II protein	1e-04

>gnl|CDD|191366 pfam05757, PsbQ, Oxygen evolving enhancer protein 3 (PsbQ)

 Score =  278 bits (712), Expect = 9e-96
 Identities = 135/203 (66%), Positives = 159/203 (78%), Gaps = 1/203 (0%)

Query: 32  RLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLG-LVAAGVASGSFVQAVLADATPI 90
            L++ S SRVA  R G  VRA     EP+TSRRA+LG LVA G+A G+F QA  A A PI
Sbjct: 1   SLSSTSRSRVATRRSGLVVRASAEPAEPQTSRRAVLGGLVATGLAGGAFAQAAAAAAKPI 60

Query: 91  KVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELI 150
           KVG PPPPSGGLPGT NSDE RD DLPLKERF++QPLSP +AA RAK SAKDIL++KE I
Sbjct: 61  KVGLPPPPSGGLPGTDNSDEARDFDLPLKERFYLQPLSPEEAAARAKESAKDILDLKEFI 120

Query: 151 DKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKS 210
           DKKAWPYV+N LRL+A YLRYDLNT+ISAKPK+EK+SLK+L  KLF  I NLD AA+ K 
Sbjct: 121 DKKAWPYVRNYLRLKAGYLRYDLNTLISAKPKEEKKSLKDLANKLFDNIENLDFAARTKD 180

Query: 211 TPEAEKYYAETVSTLNDVLSKVG 233
             EAEKYY +T S+L++VL+K+ 
Sbjct: 181 VYEAEKYYEKTKSSLDEVLAKLA 203

This family consists of the plant specific oxygen evolving enhancer protein 3 (PsbQ). Photosystem II (PSII)1 is a pigment-protein complex, which consists of at least 25 different protein subunits, at present denoted PsbA-Z according to the genes that encode them. PsbQ plays an important role in the lumenal oxygen-evolving activity of PSII from higher plants and green algae. Length = 203

>gnl|CDD|215388 PLN02729, PLN02729, PSII-Q subunit

 Score = 84.9 bits (210), Expect = 4e-20
 Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 17/231 (7%)

Query: 5   MASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEP--ETS 62
           MA +A L G + +   L    +L    R      +R      GF  +  +   E   +T+
Sbjct: 1   MAHLANLNGLTET---LPAIPKLRNLQR------TRKRGKIIGFLCKKAENFQEDSFQTT 51

Query: 63  RRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNS--DEPRDLDLPLKE 120
           RR  LGL +  +   S     LA+     +  P P    +P   N   +E       LK+
Sbjct: 52  RRLALGLASIALIGNSGNGVSLAEDNGFWLDGPLP----VPSVDNKIVNEKTGTRSFLKK 107

Query: 121 RFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAK 180
             ++  +       R K  A D+L +++LI      YV+  LRL+++++ YD + +ISA 
Sbjct: 108 GIYMADIGTKGRMYRVKKYAFDLLALEDLIGPDTLNYVRKYLRLKSTFMYYDFDKLISAA 167

Query: 181 PKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSK 231
           P D+KQ L +L  +LF     L+ A+K K+  E E  Y +T + L +V+ +
Sbjct: 168 PVDDKQPLTDLANRLFDNFEKLEDASKRKNLSETESSYKDTKTLLQEVMDR 218

Length = 220

>gnl|CDD|215515 PLN02956, PLN02956, PSII-Q subunit

 Score = 78.3 bits (193), Expect = 6e-18
 Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 4/115 (3%)

Query: 122 FFIQPLSPAQAAERAKA----SAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           F ++  +P +  E A++     A+++L VK LI+ ++W   Q  LR  AS L+ DL  II
Sbjct: 71  FDLRLTAPERTVEEAESGVRGHAENLLRVKALIESESWKEAQKALRRSASNLKQDLYAII 130

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKV 232
            AKP  ++  L+ L   LF ++  LD+AA+ K      +YY   V++L+D+ S++
Sbjct: 131 QAKPGKDRPQLRRLYSDLFNSVTKLDYAARDKDETRVWEYYENIVASLDDIFSRI 185

Length = 185

>gnl|CDD|178577 PLN02999, PLN02999, photosystem II oxygen-evolving enhancer 3 protein (PsbQ)

 Score = 63.7 bits (154), Expect = 2e-12
 Identities = 31/112 (27%), Positives = 64/112 (57%)

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           +KE++F+  LSP  AA R K +A+ + +++E++D  +W YV   +RL+ +YL  DL   +
Sbjct: 75  IKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAM 134

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 229
           +  P+  +        +L + +  LD+  +     E+  YY +T+ ++++V+
Sbjct: 135 NILPESRRNDYVQAANELVENMSELDYYVRTPKVYESYLYYEKTLKSIDNVV 186

Length = 190

>gnl|CDD|132086 TIGR03042, PS_II_psbQ_bact, photosystem II protein PsbQ

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 126 PLSPAQAAERAKASAKDILNVKE-------LIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
             SPAQ   + +  A+ I   K+       L+ K+ W + +N +      +R ++  +  
Sbjct: 29  TYSPAQL-AQIQRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQ 87

Query: 179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTL 225
           +    +++    L  +L   +  LD AA+++  P+A+K Y +  +  
Sbjct: 88  SLLPKDQKEALALAKELKDDLEKLDEAARLQDGPQAQKAYQKAAADF 134

This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology [Energy metabolism, Photosynthesis]. Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PLN02729	220	PSII-Q subunit	100.0
PF05757	202	PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); I	100.0
PLN02999	190	photosystem II oxygen-evolving enhancer 3 protein	100.0
PLN02956	185	PSII-Q subunit	100.0
TIGR03042	142	PS_II_psbQ_bact photosystem II protein PsbQ. This	99.96
PRK11546	143	zraP zinc resistance protein; Provisional	83.44
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	81.01

>PLN02729 PSII-Q subunit

Probab=100.00  E-value=4.3e-70  Score=475.10  Aligned_cols=215  Identities=29%  Similarity=0.441  Sum_probs=203.1

Q ss_pred             hHHhhcccCCCcccchhcccccccCCCcccCCCCCcccccccceEEeec-c-ccCCcchhhHHHHHHHHHHHhhchhhhh
Q 026780            5 MASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQ-Q-ASNEPETSRRAMLGLVAAGVASGSFVQA   82 (233)
Q Consensus         5 ~~~ma~l~g~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vra~-~-~~~~~~~sRRa~lgl~a~~l~~~~~~~~   82 (233)
                      |||+++|+|.+  +++ |.+++|+|.+|.      +.++.+.|+.|+.+ + |+++.|++||++|||+++++++++|+++
T Consensus         1 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~------~~~~~~~g~l~~~~~~~~~~~~~~~rr~~lgl~a~~l~~~s~~~~   71 (220)
T PLN02729          1 MAHLANLNGLT--ETL-PAIPKLRNLQRT------RKRGKIIGFLCKKAENFQEDSFQTTRRLALGLASIALIGNSGNGV   71 (220)
T ss_pred             Ccchhcccccc--ccc-ccchhhhcchhh------hhhhhhhhHhhhhhhhcccchhhhhHHHHHHHHHHHHhcchhhhH
Confidence            89999999999  888 999999999887      88899999887776 3 6678999999999999999999999999


Q ss_pred             hhhccCCcccCCC-CCCCCCCCCCCCC--CCCCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHH
Q 026780           83 VLADATPIKVGPP-PPPSGGLPGTLNS--DEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQ  159 (233)
Q Consensus        83 ~~a~~~~i~~~p~-P~ps~~~~Gt~~~--~eardl~l~lk~rf~~q~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr  159 (233)
                      ++||+.+||++|| ||||.     +|+  ||..++|.|+|||||+||++|++|++|||++|++|++||+|||+++|+|||
T Consensus        72 ~~A~~~~i~~~~P~P~pst-----~n~~~~e~~gtRsfLKerfy~~~l~p~~aa~RiK~sA~dLl~vKdLId~~sW~yVq  146 (220)
T PLN02729         72 SLAEDNGFWLDGPLPVPSV-----DNKIVNEKTGTRSFLKKGIYMADIGTKGRMYRVKKYAFDLLALEDLIGPDTLNYVR  146 (220)
T ss_pred             HHhcccCceeCCCCCCCcc-----ccccccccchHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhCcchHHHHH
Confidence            9999999999888 88884     554  777777779999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCChHHHHHHHHHHHHHHHHHHhhhC
Q 026780          160 NDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG  233 (233)
Q Consensus       160 ~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a~~~Y~~tv~~LdevLa~l~  233 (233)
                      +|||+|++||||||+++|+++|+++||+|++||++||++|++||||+|+||++++++||++|+++|||||++++
T Consensus       147 ~~LRLKAsyL~yDL~tvIsskP~~eKk~L~~LankLFdn~~eLD~AaR~Ks~~eae~yY~~Tv~aLdeVl~k~~  220 (220)
T PLN02729        147 KYLRLKSTFMYYDFDKLISAAPVDDKQPLTDLANRLFDNFEKLEDASKRKNLSETESSYKDTKTLLQEVMDRMA  220 (220)
T ss_pred             HHHHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHHHhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999975

>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=4.7e-68  Score=461.83  Aligned_cols=199  Identities=64%  Similarity=0.975  Sum_probs=107.7

Q ss_pred             CCCCCcccccccceEEeeccccCCcchhhHHHHH-HHHHHHhhchhhhhhhhccCCcccCCCCCCCCCCCCCCCCCCCCC
Q 026780           35 APSNSRVAVARPGFTVRAQQASNEPETSRRAMLG-LVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRD  113 (233)
Q Consensus        35 ~~~~~~~~~~~~~~~vra~~~~~~~~~sRRa~lg-l~a~~l~~~~~~~~~~a~~~~i~~~p~P~ps~~~~Gt~~~~eard  113 (233)
                      ++++.++.+.+.+++|||++++++.+++||++|| |+++++++++++++++++++||++++||||++++|||+++||+||
T Consensus         3 ~~~~~~~~~~r~~~~vra~~~~~~~~~~RRa~l~~l~a~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~g~~~~~~aRd   82 (202)
T PF05757_consen    3 STSSSRVASRRAGVVVRASQSPAQQQTSRRAVLGSLLAAALAGGSFAQAAAAAAWAIKVGLPPPPSGNLPGTNNSDGARD   82 (202)
T ss_dssp             ------------------------------------------------------S-EE----------------------
T ss_pred             CCcCCccccccccceeccccCcccccccHHHHHHHHHHHHHHhhhcccccccchhhhccCCCCCCCCCCCCccccccccc
Confidence            3455577777888999999988889999999999 999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 026780          114 LDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTG  193 (233)
Q Consensus       114 l~l~lk~rf~~q~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~  193 (233)
                      ++||||+|||+|++||+|+++|||+++++|+.|++|||+++|+|||+|||+|++||||||++||+++|+++||++++|+|
T Consensus        83 ~~l~lk~rf~~~~l~~~ea~~Rik~sa~~L~~lk~lIdk~sW~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~La~  162 (202)
T PF05757_consen   83 FDLPLKERFYIQPLSPEEAAARIKESAKRLLSLKELIDKKSWPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTDLAN  162 (202)
T ss_dssp             -----TT--EE----CCCHHHHHHHHHHHHCCCHHHHHTT-HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHHHHH
T ss_pred             cccchhhceecCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHhcCChHHHHHHHHHHHHHHHHHHhhhC
Q 026780          194 KLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG  233 (233)
Q Consensus       194 kLF~~le~LD~AaR~Kn~~~a~~~Y~~tv~~LdevLa~l~  233 (233)
                      +||++||+||||+|+||++++++||++|+++||+||++||
T Consensus       163 ~lf~~ie~LD~Aar~K~~~~a~~~Y~~t~~~Ldevla~la  202 (202)
T PF05757_consen  163 KLFDNIEELDYAARSKDVPEAEKYYADTVKALDEVLAKLA  202 (202)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHCCH-
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999986

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.

>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)

Probab=100.00  E-value=1.6e-50  Score=345.88  Aligned_cols=160  Identities=25%  Similarity=0.432  Sum_probs=145.4

Q ss_pred             EeeccccCCcchhhHHHHH-HHHHHHhhchhhhhhhhccCCcccCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCC
Q 026780           50 VRAQQASNEPETSRRAMLG-LVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLS  128 (233)
Q Consensus        50 vra~~~~~~~~~sRRa~lg-l~a~~l~~~~~~~~~~a~~~~i~~~p~P~ps~~~~Gt~~~~eardl~l~lk~rf~~q~ls  128 (233)
                      |.++-+..+..++||.++. |++++++|+++.               |+....+|||         |+|+|||||+||+|
T Consensus        30 ~~~~~~~~~~~~~rr~~~~~~l~~~~~~~~~~---------------~~~~~e~~Gt---------RsfLKerfy~p~ls   85 (190)
T PLN02999         30 VCCTGEPQQDIFTRRRTLTSLITFTVIGGATS---------------SALAQEKWGT---------RSFIKEKYFMPGLS   85 (190)
T ss_pred             hhcCCCchhhhHHHHHHHHHHHHHHHHhhccC---------------cHHHHhhhhh---------HHHHHHhccCCCCC
Confidence            4555444566789999888 999999876642               3445555666         45999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhc
Q 026780          129 PAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKI  208 (233)
Q Consensus       129 ~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~  208 (233)
                      |+||++|||++|++|+.||+|||+++|+|||+|||++++||||||+++|+++|+++|++|++|+++||+||++||||||+
T Consensus        86 peeAaaRiK~sA~dLl~vK~LId~~aW~YVq~~LRlkasyLryDL~tiIsskP~~eK~~L~~LankLFdnvt~LDyAAR~  165 (190)
T PLN02999         86 PEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDYYVRT  165 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhHHHHHHHHHHhhhHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhhC
Q 026780          209 KSTPEAEKYYAETVSTLNDVLSKVG  233 (233)
Q Consensus       209 Kn~~~a~~~Y~~tv~~LdevLa~l~  233 (233)
                      ||++++++||++|+++||||++.||
T Consensus       166 K~~~eae~yY~~Tv~slddVl~~l~  190 (190)
T PLN02999        166 PKVYESYLYYEKTLKSIDNVVELLA  190 (190)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999886

>PLN02956 PSII-Q subunit

Probab=100.00  E-value=5.1e-38  Score=269.78  Aligned_cols=112  Identities=33%  Similarity=0.553  Sum_probs=110.5

Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhh
Q 026780          121 RFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIG  200 (233)
Q Consensus       121 rf~~q~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le  200 (233)
                      |||+|++|||||++|||++|++|+.|++||++++|+|||||||+|++||||||++||++||+++|+++++|+++||++|+
T Consensus        74 ~~~~p~~speeA~ar~k~~A~~l~~LK~LI~k~~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~  153 (185)
T PLN02956         74 RLTAPERTVEEAESGVRGHAENLLRVKALIESESWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVT  153 (185)
T ss_pred             eecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhcCChHHHHHHHHHHHHHHHHHHhhh
Q 026780          201 NLDHAAKIKSTPEAEKYYAETVSTLNDVLSKV  232 (233)
Q Consensus       201 ~LD~AaR~Kn~~~a~~~Y~~tv~~LdevLa~l  232 (233)
                      +||+|||.||.+++++||++|+++||+||++|
T Consensus       154 ~LD~AAR~kd~~~a~k~Y~~tva~lD~Vl~~i  185 (185)
T PLN02956        154 KLDYAARDKDETRVWEYYENIVASLDDIFSRI  185 (185)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999986

>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ

Probab=99.96  E-value=5.5e-29  Score=206.99  Aligned_cols=104  Identities=18%  Similarity=0.336  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhc
Q 026780          129 PAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKI  208 (233)
Q Consensus       129 ~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~  208 (233)
                      .++++.+|.+++++|.+|+.||++++|++|||+||+++|+||+||++|+++||+++||++++|+++||+++++||+|||.
T Consensus        38 i~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA~~  117 (142)
T TIGR03042        38 IQRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAARL  117 (142)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhh
Q 026780          209 KSTPEAEKYYAETVSTLNDVLSKV  232 (233)
Q Consensus       209 Kn~~~a~~~Y~~tv~~LdevLa~l  232 (233)
                      ||.+++++||++++++||++++.|
T Consensus       118 kd~~~a~k~Y~~av~~~dafl~~~  141 (142)
T TIGR03042       118 QDGPQAQKAYQKAAADFDAYLDLL  141 (142)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999865

This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.

>PRK11546 zraP zinc resistance protein; Provisional

Probab=83.44  E-value=27  Score=29.68  Aligned_cols=38  Identities=21%  Similarity=0.433  Sum_probs=25.9

Q ss_pred             HHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Q 026780          160 NDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQT  198 (233)
Q Consensus       160 ~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~  198 (233)
                      ..||.+.-.-+.+|+.|+++-+.|+ +.+..|++++.+=
T Consensus        64 ~~LRqqL~aKr~ELnALl~~~~pD~-~kI~aL~kEI~~L  101 (143)
T PRK11546         64 SALRQQLVSKRYEYNALLTANPPDS-SKINAVAKEMENL  101 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHH
Confidence            3577777788999999999885555 3355555555443

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=81.01  E-value=2.9  Score=38.69  Aligned_cols=30  Identities=43%  Similarity=0.607  Sum_probs=19.4

Q ss_pred             eEEeeccccCCcchhhHHHHHHHHHHHhhch
Q 026780           48 FTVRAQQASNEPETSRRAMLGLVAAGVASGS   78 (233)
Q Consensus        48 ~~vra~~~~~~~~~sRRa~lgl~a~~l~~~~   78 (233)
                      ++||||.++. ...|||.+|.+++.+++.++
T Consensus        38 ~~~~~~~~~~-~~~srr~~l~~~~ga~a~~~   67 (260)
T PLN00042         38 VVCRAQEEDN-SAVSRRAALALLAGAAAAGA   67 (260)
T ss_pred             eeeecccccc-ccccHHHHHHHHHHHHHhhc
Confidence            9999986543 44688887766654444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
1nze_A	149	Crystal Structure Of Psbq Polypeptide Of Photosyste		3e-43

>pdb|1NZE|A Chain A, Crystal Structure Of Psbq Polypeptide Of Photosystem Ii From Higher Plants Length = 149

Iteration: 1
 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 105/149 (70%), Gaps = 1/149 (0%)
Query: 86  DATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPL-KERFFIQPLSPXXXXXXXXXXXKDIL 144
           +A PI V            T NSD+ RD  LP  K+RF++QPL P            +IL
Sbjct: 1   EARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEIL 60
Query: 145 NVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDH 204
           NVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +I NLDH
Sbjct: 61  NVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDH 120
Query: 205 AAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           AAKIKS  EAEKYY +TVS +N+VL+K+G
Sbjct: 121 AAKIKSPTEAEKYYGQTVSNINEVLAKLG 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	2e-60
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	1e-20
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	6e-20
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A Length = 149

 Score =  185 bits (471), Expect = 2e-60
 Identities = 105/149 (70%), Positives = 125/149 (83%), Gaps = 1/149 (0%)

Query: 86  DATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL-KERFFIQPLSPAQAAERAKASAKDIL 144
           +A PI VGPPPP SGGLPGT NSD+ RD  LP  K+RF++QPL P +AA+RAK SA +IL
Sbjct: 1   EARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEIL 60

Query: 145 NVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDH 204
           NVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +I NLDH
Sbjct: 61  NVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDH 120

Query: 205 AAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           AAKIKS  EAEKYY +TVS +N+VL+K+G
Sbjct: 121 AAKIKSPTEAEKYYGQTVSNINEVLAKLG 149

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A Length = 133

 Score = 83.7 bits (206), Expect = 1e-20
 Identities = 22/102 (21%), Positives = 43/102 (42%)

Query: 131 QAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKN 190
                A A       ++ LI  + W   Q  +      LR D+  + S+    ++   K 
Sbjct: 28  YVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKT 87

Query: 191 LTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKV 232
           L  ++F  +  LD AAK ++  +A+  Y E ++  +  L+ +
Sbjct: 88  LAKEVFGHLERLDAAAKDRNGSQAKIQYQEALADFDSFLNLL 129

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus} Length = 130

 Score = 81.4 bits (200), Expect = 6e-20
 Identities = 15/102 (14%), Positives = 38/102 (37%)

Query: 131 QAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKN 190
                 + +A+   +++  + K  W   +N +R     +  D+  +       ++ +   
Sbjct: 25  DYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTA 84

Query: 191 LTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKV 232
           LT  L      +D  A + S   A++ + E  +     L+ +
Sbjct: 85  LTRALTDDFLKIDQGADLDSVTVAQEGFREAEADFKAYLNSL 126

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 8/34 (23%)

Query: 184 EKQSLKNLTG--KLFQTIGNLDHAA--KIKSTPE 213
           EKQ+LK L    KL+      D A    IK+T E
Sbjct: 18  EKQALKKLQASLKLYAD----DSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	100.0
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	99.91
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	99.91
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	96.1
3us6_A	153	Histidine-containing phosphotransfer protein type	80.85

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A

Probab=100.00  E-value=1.6e-58  Score=384.85  Aligned_cols=148  Identities=71%  Similarity=1.123  Sum_probs=126.1

Q ss_pred             ccCCcccCCCCCCCCCCCCCCCCCCCCCCCccc-ccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhh
Q 026780           86 DATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL-KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRL  164 (233)
Q Consensus        86 ~~~~i~~~p~P~ps~~~~Gt~~~~eardl~l~l-k~rf~~q~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRl  164 (233)
                      |+.+||++||||||||+|||+||||||||+||+ |||||+|++||+||++||++++++|.+|++||++++|+|||||||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~g~~~~~~ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~   80 (149)
T 1vyk_A            1 EARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRL   80 (149)
T ss_dssp             CCSCEECCCCCCC--------------------CTTCCEECCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCCCCCcccchhhhccCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence            458999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCChHHHHHHHHHHHHHHHHHHhhhC
Q 026780          165 RASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG  233 (233)
Q Consensus       165 ka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a~~~Y~~tv~~LdevLa~l~  233 (233)
                      |++|||+||++||++||+++|+++++||++||++|++||+|||+||.+++++||++|+++||+||++||
T Consensus        81 ~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~vl~~l~  149 (149)
T 1vyk_A           81 RASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG  149 (149)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999997

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}

Probab=99.91  E-value=2.7e-24  Score=175.55  Aligned_cols=104  Identities=14%  Similarity=0.199  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhc
Q 026780          129 PAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKI  208 (233)
Q Consensus       129 ~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~  208 (233)
                      ...++.+|.+++++|.+|+.||++++|.++||+||++.|.||+||++|..+|++.+||++++|+++||++|++||+|++.
T Consensus        23 iq~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~  102 (130)
T 3zsu_A           23 IQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADL  102 (130)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34589999999999999999999999999999999999999999999999996556699999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhh
Q 026780          209 KSTPEAEKYYAETVSTLNDVLSKV  232 (233)
Q Consensus       209 Kn~~~a~~~Y~~tv~~LdevLa~l  232 (233)
                      ||...+.++|++++++||.|++.|
T Consensus       103 ~n~~~a~k~Y~~a~adfdafl~li  126 (130)
T 3zsu_A          103 DSVTVAQEGFREAEADFKAYLNSL  126 (130)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999865

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A

Probab=99.91  E-value=5.7e-24  Score=174.15  Aligned_cols=103  Identities=19%  Similarity=0.287  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhc
Q 026780          130 AQAAERAKASAKDILN-VKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKI  208 (233)
Q Consensus       130 ~ea~~RIkesA~~L~~-lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~  208 (233)
                      ..++.+|.+++++|.+ |+.||++++|.++||+||++.|.||+||++|..++++.++|++++|+++||++|++||+|++.
T Consensus        26 q~y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~  105 (133)
T 3ls0_A           26 QVYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKD  105 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4589999999999999 999999999999999999999999999999999995555589999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhh
Q 026780          209 KSTPEAEKYYAETVSTLNDVLSKV  232 (233)
Q Consensus       209 Kn~~~a~~~Y~~tv~~LdevLa~l  232 (233)
                      ||...+.++|++++++||.|++.|
T Consensus       106 ~n~~~a~k~Y~~a~adfdafl~li  129 (133)
T 3ls0_A          106 RNGSQAKIQYQEALADFDSFLNLL  129 (133)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999865

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=96.10  E-value=0.0071  Score=56.41  Aligned_cols=96  Identities=11%  Similarity=0.145  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHhhh---CChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCCh
Q 026780          135 RAKASAKDILNVKELIDK---KAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKST  211 (233)
Q Consensus       135 RIkesA~~L~~lk~lIdk---ksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~  211 (233)
                      .|++-.+.|.++-++|.-   |.|.-+.++++.-+.-|..+=+.|+++.|.++|.+...|.++|=..|++|..++..||.
T Consensus        49 ~~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~  128 (369)
T 3rfy_A           49 AIREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKR  128 (369)
T ss_dssp             HHHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHHCCCSSCCC
T ss_pred             hHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence            467777788888888876   99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 026780          212 PEAEKYYAETVSTLNDVLS  230 (233)
Q Consensus       212 ~~a~~~Y~~tv~~LdevLa  230 (233)
                      ..+....++++..+.++-.
T Consensus       129 ~~~~~~~~~~l~~v~~le~  147 (369)
T 3rfy_A          129 DAVAPKQKEILKYVGGIEE  147 (369)
T ss_dssp             SSSGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999998888877643

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}

Probab=80.85  E-value=15  Score=29.42  Aligned_cols=77  Identities=6%  Similarity=0.066  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHhhhC--ChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCChHHH
Q 026780          137 KASAKDILNVKELIDKK--AWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEA  214 (233)
Q Consensus       137 kesA~~L~~lk~lIdkk--sW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a  214 (233)
                      .++.+.|..|+..++..  .|..+....|.        |+...+++.          +.+|.+-..+|..++|.++...+
T Consensus        51 ~d~~~~l~~L~~al~~~~~D~~~l~~~aH~--------LKGss~~lG----------a~~l~~~c~~lE~~~~~~~~~~~  112 (153)
T 3us6_A           51 DDSERILKDLSFAVDQQSIDFKKVDAHVHQ--------FKGSSASIG----------AQRVKNSCVAFRNFCEEQNIDAC  112 (153)
T ss_dssp             HHHHHHHHHHHHHHTSSSCCHHHHHHHHHH--------HHHHHHHHT----------CHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccHHHHHHHHHH--------HHHHHHHhc----------HHHHHHHHHHHHHHHHcCCHHHH
Confidence            34444555666666555  56655444432        222333332          25566777788889999998887


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 026780          215 EKYYAETVSTLNDVLSK  231 (233)
Q Consensus       215 ~~~Y~~tv~~LdevLa~  231 (233)
                      ..++.+....+..+...
T Consensus       113 ~~~l~~l~~e~~~v~~~  129 (153)
T 3us6_A          113 RRCLQQVKQEYLLVKNK  129 (153)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1nzea_	112	a.24.18.1 (A:) Oxygen-evolving enhancer protein 3,	5e-48

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 112

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  151 bits (384), Expect = 5e-48
 Identities = 80/112 (71%), Positives = 97/112 (86%)

Query: 122 FFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKP 181
           F++QPL P +AA+RAK SA +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKP
Sbjct: 1   FYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKP 60

Query: 182 KDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           KDEK+SL+ LT KLF +I NLDHAAKIKS  EAEKYY +TVS +N+VL+K+G
Sbjct: 61  KDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1nzea_	112	Oxygen-evolving enhancer protein 3, {Spinach (Spin	100.0
d2a0ba_	118	Aerobic respiration control sensor protein, ArcB {	85.6
d1sr2a_	116	Sensor-like histidine kinase YojN, C-terminal doma	85.28
d1ykhb1	129	RNA polymerase II holoenzyme component SRB7 (MED21	84.8

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=2.3e-41  Score=267.24  Aligned_cols=112  Identities=71%  Similarity=1.109  Sum_probs=111.3

Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhh
Q 026780          122 FFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGN  201 (233)
Q Consensus       122 f~~q~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~  201 (233)
                      ||+||+||+|++.||++++++|.+|++||++++|+|||+|||+++||||+||++||+++|+++||++++|+++||++||+
T Consensus         1 f~~~~l~p~eaa~ri~~sa~~L~~l~~lI~k~~W~~v~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~le~   80 (112)
T d1nzea_           1 FYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDN   80 (112)
T ss_dssp             CCCCCCCTTTHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhcCChHHHHHHHHHHHHHHHHHHhhhC
Q 026780          202 LDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG  233 (233)
Q Consensus       202 LD~AaR~Kn~~~a~~~Y~~tv~~LdevLa~l~  233 (233)
                      ||+|||.||.+++++||++|+++||+||++||
T Consensus        81 LD~Aar~kd~~~a~~~Y~~t~~~ld~~la~lg  112 (112)
T d1nzea_          81 LDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG  112 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999997

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

Probab=85.60  E-value=2.9  Score=29.39  Aligned_cols=87  Identities=9%  Similarity=0.070  Sum_probs=49.9

Q ss_pred             CCHHHHHHHH----HHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhh
Q 026780          127 LSPAQAAERA----KASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNL  202 (233)
Q Consensus       127 ls~~ea~~RI----kesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~L  202 (233)
                      ++++....-|    ++..+.|..++..++.+.|..++...|.        |+....++.-.   .+..++.+       |
T Consensus        19 ~g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~d~~~~~~~aH~--------LKgsa~~~G~~---~l~~~~~~-------l   80 (118)
T d2a0ba_          19 VGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHK--------IKGAAGSVGLR---HLQQLGQQ-------I   80 (118)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------HHHHHHHTTCH---HHHHHHHH-------H
T ss_pred             hCHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCHHHHHHHHHH--------HHHHHHHcCHH---HHHHHHHH-------H
Confidence            4555444433    3444555678888899999999888875        33334444331   12233332       2


Q ss_pred             HHHHhcCC-------hHHHHHHHHHHHHHHHHHHhh
Q 026780          203 DHAAKIKS-------TPEAEKYYAETVSTLNDVLSK  231 (233)
Q Consensus       203 D~AaR~Kn-------~~~a~~~Y~~tv~~LdevLa~  231 (233)
                      ..+++.++       ..+...+|++++..|+++|++
T Consensus        81 E~~~~~~~~~~~~~~l~~l~~~~~~~~~~L~~~l~~  116 (118)
T d2a0ba_          81 QSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK  116 (118)
T ss_dssp             TCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            23333333       344567778888888887764

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.28  E-value=1.8  Score=31.05  Aligned_cols=75  Identities=15%  Similarity=0.158  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCChHHHH
Q 026780          136 AKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAE  215 (233)
Q Consensus       136 IkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a~  215 (233)
                      +.+.-.+|..|+..++.++|..++...|.        |+.......-          ..+..-..+|..++|.+|.+++.
T Consensus        41 ~~~~p~~l~~L~~a~~~~D~~~l~~~aH~--------LKGs~~~~Ga----------~~l~~~~~~lE~~~~~~~~~~~~  102 (116)
T d1sr2a_          41 VDTVPDDVKRLYTEAATSDFAALAQTAHR--------LKGVFAMLNL----------VPGKQLCETLEHLIREKDVPGIE  102 (116)
T ss_dssp             TTTHHHHHHHHHHHHHHTCHHHHHHHHHH--------HHHHHHHHTC----------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhhHHHHHHHHHHHHCcCHHHHHHHHHH--------HHHHHHHcCc----------hHHHHHHHHHHHHHHhCCHHHHH
Confidence            34566778899999999999999998875        3333333332          44556667888999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 026780          216 KYYAETVSTLNDV  228 (233)
Q Consensus       216 ~~Y~~tv~~Ldev  228 (233)
                      ..+.+.-..+..+
T Consensus       103 ~ll~~le~~~~~l  115 (116)
T d1sr2a_         103 KYISDIDSYVKSL  115 (116)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            8887776666654

>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Mediator hinge subcomplex-like
superfamily: Mediator hinge subcomplex-like
family: CSE2-like
domain: RNA polymerase II holoenzyme component SRB7 (MED21)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.80  E-value=3.9  Score=30.67  Aligned_cols=75  Identities=20%  Similarity=0.261  Sum_probs=50.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCCh------hhHHHHHHHHHHHHHhh
Q 026780          126 PLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK------DEKQSLKNLTGKLFQTI  199 (233)
Q Consensus       126 ~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPk------d~Kk~l~~La~kLF~~l  199 (233)
                      +.+|++....+++.+.+|..                       =-+++..||+++|.      ++-+.+.+|-.++=..=
T Consensus        48 ~~~~e~f~~~~~elA~dii~-----------------------kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~  104 (129)
T d1ykhb1          48 VVPPEEFSNTIDELSTDIIL-----------------------KTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVE  104 (129)
T ss_dssp             CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH-----------------------HHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999874                       14789999999984      45555666666655555


Q ss_pred             hhhHHHHhcCChHHHHHHHHHHHHHHHHH
Q 026780          200 GNLDHAAKIKSTPEAEKYYAETVSTLNDV  228 (233)
Q Consensus       200 e~LD~AaR~Kn~~~a~~~Y~~tv~~Ldev  228 (233)
                      ++|..+++.     ++..+++....|.+|
T Consensus       105 ~el~~~v~e-----~e~ll~~i~~~i~~i  128 (129)
T d1ykhb1         105 DEKIEAIKK-----KEKLMRHVDSMIEDF  128 (129)
T ss_dssp             HHHHHHHHH-----HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence            555555543     445555555555443