Citrus Sinensis ID: 026791


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MDAINVMKGYDKVDHLQNRAGIHSLRTHQRLKTAVTISAIVLLTLIIGLMLAVLIRESNAEEQQRLDAAESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKSLYGNHLEVALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIRTLLQKFGLHMH
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccHHHHHHHHccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
cccHHHccccccccHHHHHcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
mdainvmkgydkvdhlqnragihslRTHQRLKTAVTISAIVLLTLIIGLMLAVLIRESNAEEQQRLDAAESIKTVCsvtqnpdsCFTALSsslnisstttkpdpeVILKLSLQVNVNHFSNITSSIKSLYGNHLEVALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIRTLLQKFGLHMH
mdainvmkgydkvdhlqNRAGIHSLRTHQRLKTAVTISAIVLLTLIIGLMLAVLIRESNAEEQQRLDAAESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKSLYGNHLEVALRDCVDQLRDASSRLNDSMSelnatltdrtvnDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIRTLLQKFGLHMH
MDAINVMKGYDKVDHLQNRAGIHSLRTHQRLKTAVTISAIVLLTLIIGLMLAVLIRESNAEEQQRLDAAESIKTVCSVTQNPDSCFtalssslnisstttKPDPEVILKLSLQVNVNHFSNITSSIKSLYGNHLEVALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIRTLLQKFGLHMH
*******KGYDKVDHLQNRAGIHSLRTHQRLKTAVTISAIVLLTLIIGLMLAVLIRE**************IKTVCSVTQN*DSCFTAL***************EVILKLSLQVNVNHFSNITSSIKSLYGNHLEVALRDCVDQL***************ATLTDRTVNDIQTWISAAMTDEETCLDGLE*****************KELLSYSLAIIANIRTLLQKFGL***
*****VM*G************************AVTISAIVLLTLIIGLMLA*******************IKTVCSVTQNPDSCFTAL***************EVILKLSLQVNVNHFSNITSSIKSLYGNHLEVALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEMG**********MKKSKELLSYSLAIIANIRTLLQKFGL***
MDAINVMKGYDKVDHLQNRAGIHSLRTHQRLKTAVTISAIVLLTLIIGLMLAVLIRESNAEEQQRLDAAESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKSLYGNHLEVALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIRTLLQKFGLHMH
**********DKVDHLQNRAGIHSLRTHQRLKTAVTISAIVLLTLIIGLMLAVLIRE*********DAAESIKTVCSVTQNPDSCFTALSSSLNISS*TTKPDPEVILKLSLQVNVNHFSNITSSIKSLYGNHLEVALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIRTLLQKFGLHM*
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDAINVMKGYDKVDHLQNRAGIHSLRTHQRLKTAVTISAIVLLTLIIGLMLAVLIRESNAEEQQRLDAAESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKSLYGNHLEVALRDCxxxxxxxxxxxxxxxxxxxxxLTDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIRTLLQKFGLHMH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
Q43111 581 Pectinesterase 3 OS=Phase N/A no 0.965 0.387 0.376 2e-29
Q9LUL8 968 Putative pectinesterase/p no no 0.969 0.233 0.367 3e-26
Q43867 586 Pectinesterase 1 OS=Arabi no no 0.974 0.387 0.339 5e-26
Q9FF78 564 Probable pectinesterase/p no no 0.854 0.352 0.266 2e-12
Q9SG77 561 Putative pectinesterase/p no no 0.896 0.372 0.256 2e-11
Q3E8Z8 732 Putative pectinesterase/p no no 0.798 0.254 0.216 8e-11
P17407193 21 kDa protein OS=Daucus N/A no 0.716 0.865 0.270 1e-09
Q9FJ21 571 Probable pectinesterase/p no no 0.824 0.336 0.260 1e-09
Q43143 583 Pectinesterase/pectineste N/A no 0.781 0.312 0.256 2e-09
Q9FK05 587 Probable pectinesterase/p no no 0.781 0.310 0.247 2e-09
>sp|Q43111|PME3_PHAVU Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1 Back     alignment and function desciption
 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/252 (37%), Positives = 143/252 (56%), Gaps = 27/252 (10%)

Query: 1   MDAINVMKGYDKVDHLQNRAGIHSLRTHQRLKTAVTISAIVLLTLIIGLMLAVLIRESNA 60
           MD I   KGY KV+ L+ +A  +  +T +RL   + +S+IVL+ +II  +  V+I   N+
Sbjct: 1   MDTIKSFKGYGKVNELEQQA--YEKKTRKRL-IIIAVSSIVLIAVIIAAVAGVVIHNRNS 57

Query: 61  E--------EQQRLDAAESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSL 112
           E         Q  L  A S+K VC  T+ P SC  +  SSL  S+TT   DPE++ KLSL
Sbjct: 58  ESSPSSDSVPQTELSPAASLKAVCDTTRYPSSC-FSSISSLPESNTT---DPELLFKLSL 113

Query: 113 QVNVNHFSNITSSIKS--LYGNHLEVALRDCVDQLRDASSRLNDSMSELNATLTDR---- 166
           +V ++  S+  S +++       L+ A+  C     DA  RLNDS+S L  T+  R    
Sbjct: 114 RVAIDELSSFPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISAL-GTVAGRIASS 172

Query: 167 -TVNDIQTWISAAMTDEETCLDGLEEMGSTVA----DEVKTMMKKSKELLSYSLAIIANI 221
            +V++++TW+SAA+TD++TCLD + E+ ST A     E++T M+ S E  S SLAI+  I
Sbjct: 173 ASVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQEIETAMRNSTEFASNSLAIVTKI 232

Query: 222 RTLLQKFGLHMH 233
             LL +F   +H
Sbjct: 233 LGLLSRFETPIH 244




May have roles in the deposition of pectin in developing tissues and in the wall loosening and cell separation that occurs in cell expansion, fruit ripening and abscission.
Phaseolus vulgaris (taxid: 3885)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9LUL8|PME26_ARATH Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1 Back     alignment and function description
>sp|Q43867|PME1_ARATH Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF78|PME46_ARATH Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1 Back     alignment and function description
>sp|Q9SG77|PME24_ARATH Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1 Back     alignment and function description
>sp|Q3E8Z8|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1 Back     alignment and function description
>sp|P17407|21KD_DAUCA 21 kDa protein OS=Daucus carota PE=2 SV=1 Back     alignment and function description
>sp|Q9FJ21|PME58_ARATH Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1 Back     alignment and function description
>sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
225456731242 PREDICTED: putative pectinesterase/pecti 0.978 0.942 0.461 2e-48
224053951240 predicted protein [Populus trichocarpa] 0.982 0.954 0.495 2e-47
118483452240 unknown [Populus trichocarpa] 0.982 0.954 0.491 3e-47
224074889240 predicted protein [Populus trichocarpa] 0.957 0.929 0.46 2e-44
255540983244 enzyme inhibitor, putative [Ricinus comm 0.982 0.938 0.475 4e-42
449439607252 PREDICTED: pectinesterase 3-like [Cucumi 0.982 0.908 0.421 4e-42
356516776227 PREDICTED: pectinesterase 3-like [Glycin 0.952 0.977 0.424 6e-42
224074107 588 predicted protein [Populus trichocarpa] 0.969 0.384 0.401 1e-37
388494626229 unknown [Medicago truncatula] 0.927 0.943 0.421 6e-37
225441979 578 PREDICTED: pectinesterase 3 [Vitis vinif 0.969 0.391 0.414 2e-36
>gi|225456731|ref|XP_002275117.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 26-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 114/247 (46%), Positives = 163/247 (65%), Gaps = 19/247 (7%)

Query: 1   MDAINVMKGYDKVDHLQNRAGIHSLRTHQR-LKTAVTISAIVLLTLIIGLMLAVLIRES- 58
           MD IN +KGY+K++HL+++A   S  TH++ L   +TIS I+L TLIIG ++  L+  S 
Sbjct: 1   MDPINFIKGYNKLNHLEDQAA-PSTHTHKKPLLITITISFILLFTLIIGAVVGALVHHSY 59

Query: 59  -NAEEQQRLDA--AESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVN 115
             + E   L +  A+SIKT+C+VTQ P SCF+ LS+ LN S    K DPE+I   SL+++
Sbjct: 60  TQSPEYPSLSSSYADSIKTICNVTQYPVSCFSTLST-LNASP---KFDPELIFMASLKIS 115

Query: 116 VNHFSNITSSIKSLY----GNHLEVALRDCVDQLRDASSRLNDSMSELNA-----TLTDR 166
             H SN++S  K+L         E ALRDC   L DAS+++N+++S +        +T+ 
Sbjct: 116 FTHLSNLSSFPKTLILRAKDPRSEAALRDCESLLEDASAQVNNTISAMEVGPGKKMMTES 175

Query: 167 TVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIRTLLQ 226
            + D++TW+S+A+TD+ETCLDGLEEM S+V +EVK  M+ SKE  S SLAI+ANI+ LLQ
Sbjct: 176 KIEDMRTWLSSAITDQETCLDGLEEMNSSVVEEVKNTMQPSKEFTSNSLAILANIKVLLQ 235

Query: 227 KFGLHMH 233
            F L MH
Sbjct: 236 NFNLTMH 242




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053951|ref|XP_002298054.1| predicted protein [Populus trichocarpa] gi|222845312|gb|EEE82859.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118483452|gb|ABK93625.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224074889|ref|XP_002304477.1| predicted protein [Populus trichocarpa] gi|222841909|gb|EEE79456.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255540983|ref|XP_002511556.1| enzyme inhibitor, putative [Ricinus communis] gi|223550671|gb|EEF52158.1| enzyme inhibitor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449439607|ref|XP_004137577.1| PREDICTED: pectinesterase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516776|ref|XP_003527069.1| PREDICTED: pectinesterase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|224074107|ref|XP_002304256.1| predicted protein [Populus trichocarpa] gi|222841688|gb|EEE79235.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388494626|gb|AFK35379.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225441979|ref|XP_002265217.1| PREDICTED: pectinesterase 3 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
TAIR|locus:2079162276 AT3G47670 [Arabidopsis thalian 0.957 0.807 0.364 9.5e-34
TAIR|locus:2197061 586 PME1 "pectin methylesterase 1" 0.969 0.385 0.338 5.6e-30
TAIR|locus:2091070 968 ATPMEPCRC [Arabidopsis thalian 0.969 0.233 0.347 8.1e-24
TAIR|locus:2175319 564 AT5G04960 [Arabidopsis thalian 0.858 0.354 0.25 6.8e-15
TAIR|locus:2122699199 AT4G25250 [Arabidopsis thalian 0.712 0.834 0.280 1.6e-13
TAIR|locus:2006842219 AT1G14890 [Arabidopsis thalian 0.806 0.858 0.279 7.1e-13
TAIR|locus:2026237204 AT1G62770 [Arabidopsis thalian 0.746 0.852 0.255 7.1e-13
TAIR|locus:2033590200 AT1G70720 [Arabidopsis thalian 0.635 0.74 0.239 9.1e-13
TAIR|locus:2049597222 AT2G01610 [Arabidopsis thalian 0.716 0.752 0.288 1.2e-12
TAIR|locus:2167893203 AT5G62360 [Arabidopsis thalian 0.755 0.866 0.271 1.2e-12
TAIR|locus:2079162 AT3G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 89/244 (36%), Positives = 140/244 (57%)

Query:     1 MDAINVMKGYDKVDHLQNRAGIHSLRTHQRL--------KTAVTISAIVLLTLIIGLMLA 52
             M++IN +KGYDKV   +N+  IH    H  L        KT +   ++V L LI+ ++  
Sbjct:    37 MESINTLKGYDKVSDQENQ--IHH-HHHSPLPKPSSFSRKTLIATGSVVSLLLILSVVAL 93

Query:    53 VLIRESNAEEQQRLDAAESIKTVCSVTQNPDSCFXXXXXXXXXXXXXXKPDPEVILKLSL 112
                  +++       ++ S+K++CSVT+ P++CF              K +PE IL+LSL
Sbjct:    94 TAGAFTHSPPHHPPISSASLKSLCSVTRYPETCFNSLSSSLNESDS--KLNPESILELSL 151

Query:   113 QVNVNHFSNITSSIKSLYGNHLEVALRDCVDQLRDASSRLNDSMSEL--------NATLT 164
             +V     SN++ S +S+     + A+ DCV    DA S+LNDS++E+        N  LT
Sbjct:   152 RVAAKEISNLSISFRSINDMPEDAAVGDCVKLYTDALSQLNDSITEIERKKKKGGNNWLT 211

Query:   165 DRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIRTL 224
             +  V D++TWISAAMTD ETC DG+EEMG+ V +E+K  M+ + +++S SLAI++ ++ L
Sbjct:   212 EEVVGDVKTWISAAMTDGETCSDGIEEMGTIVGNEIKKKMEMANQMMSISLAIVSQMKKL 271

Query:   225 LQKF 228
             L  F
Sbjct:   272 LLIF 275




GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0030599 "pectinesterase activity" evidence=IEA
GO:0046910 "pectinesterase inhibitor activity" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2197061 PME1 "pectin methylesterase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091070 ATPMEPCRC [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175319 AT5G04960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122699 AT4G25250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006842 AT1G14890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026237 AT1G62770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033590 AT1G70720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049597 AT2G01610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167893 AT5G62360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
PLN02314 586 PLN02314, PLN02314, pectinesterase 2e-57
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 4e-31
PLN02468 565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-28
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 8e-27
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 2e-21
PLN02745 596 PLN02745, PLN02745, Putative pectinesterase/pectin 2e-20
PLN02484 587 PLN02484, PLN02484, probable pectinesterase/pectin 5e-16
PLN02990 572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-13
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-12
PLN02313 587 PLN02313, PLN02313, Pectinesterase/pectinesterase 3e-11
PLN02416 541 PLN02416, PLN02416, probable pectinesterase/pectin 2e-09
PLN02698 497 PLN02698, PLN02698, Probable pectinesterase/pectin 2e-09
PLN02506 537 PLN02506, PLN02506, putative pectinesterase/pectin 8e-09
PLN02916 502 PLN02916, PLN02916, pectinesterase family protein 2e-08
PLN02713 566 PLN02713, PLN02713, Probable pectinesterase/pectin 5e-08
PLN02301 548 PLN02301, PLN02301, pectinesterase/pectinesterase 6e-08
PLN02933 530 PLN02933, PLN02933, Probable pectinesterase/pectin 3e-07
PLN02170 529 PLN02170, PLN02170, probable pectinesterase/pectin 2e-05
PLN02995 539 PLN02995, PLN02995, Probable pectinesterase/pectin 2e-05
PLN02201 520 PLN02201, PLN02201, probable pectinesterase/pectin 2e-05
PLN03043 538 PLN03043, PLN03043, Probable pectinesterase/pectin 6e-05
PLN02708 553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-04
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
 Score =  191 bits (486), Expect = 2e-57
 Identities = 94/252 (37%), Positives = 142/252 (56%), Gaps = 26/252 (10%)

Query: 1   MDAINVMKGYDKVDHLQNRAGIHSLRTHQRLKTAVTISAIVLLTLIIGLMLAVLI----R 56
           MD+IN  KGY KVD  + +A     +T +RL   + +S +VL+ +IIG ++  ++     
Sbjct: 1   MDSINSFKGYGKVDEAEEQA--FRRKTRKRL-IIIVVSVVVLVAIIIGAVVGTVVHKRKN 57

Query: 57  ESNAEEQQRLDAAESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNV 116
           ESN      L  A S+K VCSVT+ P+SC +++SS    ++T    DPE + KLSL+V +
Sbjct: 58  ESNPSPPPELTPATSLKAVCSVTRYPESCISSISSLPTSNTT----DPETLFKLSLKVAI 113

Query: 117 NHFSNITSS----IKSLYGNHLEVALRDCVDQLRDASSRLNDSMS-----ELNATLTDRT 167
           +  S ++      I       L+ ALR C     DA  RLNDS+S     E    L+   
Sbjct: 114 DELSKLSDLPQKLINETNDERLKSALRVCETLFDDAIDRLNDSISSMQVGEGEKILSSSK 173

Query: 168 VNDIQTWISAAMTDEETCLDGLEEMG------STVADEVKTMMKKSKELLSYSLAIIANI 221
           ++D++TW+SA +TD+ETC+D L+E+       ST+ +EVKT M  S E  S SLAI++ I
Sbjct: 174 IDDLKTWLSATITDQETCIDALQELSQNKYANSTLTNEVKTAMSNSTEFTSNSLAIVSKI 233

Query: 222 RTLLQKFGLHMH 233
             +L   G+ +H
Sbjct: 234 LGILSDLGIPIH 245


Length = 586

>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
PLN02314 586 pectinesterase 100.0
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313 587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197 588 pectinesterase 100.0
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.98
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 99.98
PLN02301 548 pectinesterase/pectinesterase inhibitor 99.97
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 99.97
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 99.97
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 99.97
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.97
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 99.97
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 99.97
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.96
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 99.93
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 99.91
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 99.91
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 99.89
PLN02916 502 pectinesterase family protein 99.76
>PLN02314 pectinesterase Back     alignment and domain information
Probab=100.00  E-value=2.2e-44  Score=342.45  Aligned_cols=226  Identities=40%  Similarity=0.684  Sum_probs=187.7

Q ss_pred             CcccccccCCCCCchhhhhhccccccccchhhHHHHHHHHHHHHHHHHHhheeeecCCCcccc-cc---cchhHHHHccC
Q 026791            1 MDAINVMKGYDKVDHLQNRAGIHSLRTHQRLKTAVTISAIVLLTLIIGLMLAVLIRESNAEEQ-QR---LDAAESIKTVC   76 (233)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~i~~~s~illv~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~i~~~C   76 (233)
                      ||+|+++|+|++.++..++..  .++++||+ +|++++++|||++++++++++..|.+++.++ .+   ...+..|+.+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~l~v~~vi~~v~~~~~~~~~~~~~~~~~~~~~~~~~Iks~C   77 (586)
T PLN02314          1 MDSINSFKGYGKVDEAEEQAF--RRKTRKRL-IIIVVSVVVLVAIIIGAVVGTVVHKRKNESNPSPPPELTPATSLKAVC   77 (586)
T ss_pred             CcchhhhcccCCccchhhhhh--hhccccee-hHHHHHHHHHHHHHHhheeEEeccccCCCCCCCCccccCHHHHHHHhc
Confidence            899999999999877422222  22347788 9999999999999999998887765443221 11   22456999999


Q ss_pred             CCCCChhchhHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHHHHHHHHHHHHHHHHH
Q 026791           77 SVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKSL----YGNHLEVALRDCVDQLRDASSRL  152 (233)
Q Consensus        77 ~~T~yp~~C~~sL~~~~~s~~~~~~~~~~~l~~~sl~~t~~~~~~a~~~~~~l----~d~~~k~AL~dC~el~~~a~d~L  152 (233)
                      +.|+||++|+++|++.|.+    ...+|++|++++++++++++.++...++++    .+++.+.||+||+|+|++++|+|
T Consensus        78 ~~T~YP~lC~sSLs~~p~s----~~~~p~~L~~~al~vti~~a~~a~~~~~~L~~~~~~~~~k~AL~DC~EllddAid~L  153 (586)
T PLN02314         78 SVTRYPESCISSISSLPTS----NTTDPETLFKLSLKVAIDELSKLSDLPQKLINETNDERLKSALRVCETLFDDAIDRL  153 (586)
T ss_pred             cCCCChHHHHHHHhcccCc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875    567999999999999999999999888877    57899999999999999999999


Q ss_pred             HHhHHhhhh--c---ccccChhhHHHHHHHHhccHHHHHHhhhhc------CcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026791          153 NDSMSELNA--T---LTDRTVNDIQTWISAAMTDEETCLDGLEEM------GSTVADEVKTMMKKSKELLSYSLAIIANI  221 (233)
Q Consensus       153 ~~s~~~~~~--~---~~~~~~~D~~twLSAAlt~q~TC~Dgf~~~------~~~~~~~l~~~~~~~~~L~SNaLAiv~~~  221 (233)
                      ++++.+++.  .   +....++|++||||||||||+||+|||++.      ++.+++.|...+.++.||+||+|||++++
T Consensus       154 ~~Sl~~l~~~~~~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~~~~k~~~s~vk~~~~~~l~n~~eLtSNaLAIi~~l  233 (586)
T PLN02314        154 NDSISSMQVGEGEKILSSSKIDDLKTWLSATITDQETCIDALQELSQNKYANSTLTNEVKTAMSNSTEFTSNSLAIVSKI  233 (586)
T ss_pred             HHHHHHHhhcccccccccccHHHHHhHHHHHhcCHhHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999987421  0   114578999999999999999999999864      34578889999999999999999999999


Q ss_pred             HhhhhhcCCCCC
Q 026791          222 RTLLQKFGLHMH  233 (233)
Q Consensus       222 ~~~~~~~~~~~~  233 (233)
                      ...+.+|+++.|
T Consensus       234 ~~~~~~~~~~~~  245 (586)
T PLN02314        234 LGILSDLGIPIH  245 (586)
T ss_pred             cccccccccccc
Confidence            998888876543



>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 6e-25
1x91_A153 Invertase/pectin methylesterase inhibitor family p 8e-25
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 1e-18
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
 Score = 95.4 bits (237), Expect = 6e-25
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 70  ESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKSL 129
             I  +C  T+NP  C  AL S    +S     D + + + S+ +        +  I SL
Sbjct: 4   HLISEICPKTRNPSLCLQALESDPRSASK----DLKGLGQFSIDIAQASAKQTSKIIASL 59

Query: 130 ----YGNHLEVALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETC 185
                   L+     C +   DA   L  +   L +       N +  + SAA     TC
Sbjct: 60  TNQATDPKLKGRYETCSENYADAIDSLGQAKQFLTS----GDYNSLNIYASAAFDGAGTC 115

Query: 186 LDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANI 221
            D  E   + +  ++     K ++L    L I   +
Sbjct: 116 EDSFEGPPN-IPTQLHQADLKLEDLCDIVLVISNLL 150


>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 100.0
1x91_A153 Invertase/pectin methylesterase inhibitor family p 100.0
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 100.0
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
Probab=100.00  E-value=2.7e-34  Score=228.98  Aligned_cols=145  Identities=22%  Similarity=0.319  Sum_probs=132.2

Q ss_pred             hHHHHccCCCCCChhchhHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHHHHHHHHH
Q 026791           69 AESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKSL----YGNHLEVALRDCVDQ  144 (233)
Q Consensus        69 ~~~i~~~C~~T~yp~~C~~sL~~~~~s~~~~~~~~~~~l~~~sl~~t~~~~~~a~~~~~~l----~d~~~k~AL~dC~el  144 (233)
                      .+.|+.+|+.|+||++|+++|.++|++    ..++|++|+++++++++.++..+...+.++    .+++.+.||+||.|+
T Consensus         3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~----~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~   78 (153)
T 1xg2_B            3 NHLISEICPKTRNPSLCLQALESDPRS----ASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQATDPKLKGRYETCSEN   78 (153)
T ss_dssp             CHHHHHHGGGSSCHHHHHHHHHTCTTG----GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HhHHHHHhcCCCChHHHHHHHhhCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999876    567999999999999999999999999887    478999999999999


Q ss_pred             HHHHHHHHHHhHHhhhhcccccChhhHHHHHHHHhccHHHHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026791          145 LRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIR  222 (233)
Q Consensus       145 ~~~a~d~L~~s~~~~~~~~~~~~~~D~~twLSAAlt~q~TC~Dgf~~~~~~~~~~l~~~~~~~~~L~SNaLAiv~~~~  222 (233)
                      |++++++|++++.+++    .++++|+++|||+|+||++||+|||.+. +.++++|...+.++.+|++|+|+|++.+.
T Consensus        79 y~~a~~~L~~a~~~l~----~~~~~d~~t~lSaAlt~~~tC~dgf~~~-~~~~~~l~~~~~~~~~l~s~aLai~~~l~  151 (153)
T 1xg2_B           79 YADAIDSLGQAKQFLT----SGDYNSLNIYASAAFDGAGTCEDSFEGP-PNIPTQLHQADLKLEDLCDIVLVISNLLP  151 (153)
T ss_dssp             HHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHHCCSS-SCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcccchHHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999854    4568999999999999999999999875 25678999999999999999999998764



>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 233
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 3e-23
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 1e-19
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Plant invertase/pectin methylesterase inhibitor
family: Plant invertase/pectin methylesterase inhibitor
domain: Pectin methylesterase inhibitor 1, PMEI1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 Score = 89.3 bits (221), Expect = 3e-23
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 15/157 (9%)

Query: 69  AESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKS 128
           +  + T+C  T NP  C   L++           + + + K +L       +     ++S
Sbjct: 1   SSEMSTICDKTLNPSFCLKFLNTK------FASANLQALAKTTLDSTQARATQTLKKLQS 54

Query: 129 LYGNH----LEVALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEET 184
           +         ++A R CVD+   A   L ++   L +         +   +SAA+   +T
Sbjct: 55  IIDGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLAS----GDGMGMNMKVSAALDGADT 110

Query: 185 CLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANI 221
           CLD ++ + S V   V    K  K L   +L I   +
Sbjct: 111 CLDDVKRLRS-VDSSVVNNSKTIKNLCGIALVISNML 146


>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.97
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.97
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Plant invertase/pectin methylesterase inhibitor
family: Plant invertase/pectin methylesterase inhibitor
domain: Pectin methylesterase inhibitor 1, PMEI1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.97  E-value=1.7e-31  Score=210.36  Aligned_cols=141  Identities=23%  Similarity=0.397  Sum_probs=128.5

Q ss_pred             HHHccCCCCCChhchhHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHHHHHHHHHHH
Q 026791           71 SIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKSL----YGNHLEVALRDCVDQLR  146 (233)
Q Consensus        71 ~i~~~C~~T~yp~~C~~sL~~~~~s~~~~~~~~~~~l~~~sl~~t~~~~~~a~~~~~~l----~d~~~k~AL~dC~el~~  146 (233)
                      .|+.+|+.|+||++|+++|.+.|.      +.|+.+|+++++++++.++..+...+..+    .+++.+.||+||.++|+
T Consensus         3 ~i~~~C~~T~~~~~C~~~L~~~~~------~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~al~~C~~~y~   76 (149)
T d1x91a_           3 EMSTICDKTLNPSFCLKFLNTKFA------SANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSKLAYRSCVDEYE   76 (149)
T ss_dssp             STTTGGGGSSCHHHHHHHHHHTTC------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhCCCCCcHHHHHHHCcCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            478899999999999999987654      36999999999999999999999999887    58999999999999999


Q ss_pred             HHHHHHHHhHHhhhhcccccChhhHHHHHHHHhccHHHHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026791          147 DASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIR  222 (233)
Q Consensus       147 ~a~d~L~~s~~~~~~~~~~~~~~D~~twLSAAlt~q~TC~Dgf~~~~~~~~~~l~~~~~~~~~L~SNaLAiv~~~~  222 (233)
                      +++++|++++.+++    .++++|+++|||+|+++++||+|||.+. +..++++....+++.+|++|+|+|++.+.
T Consensus        77 ~a~~~L~~a~~~l~----~~~~~~~~~~lsaa~~~~~tC~d~f~~~-~~~~s~l~~~~~~~~~l~~ialai~~~L~  147 (149)
T d1x91a_          77 SAIGNLEEAFEHLA----SGDGMGMNMKVSAALDGADTCLDDVKRL-RSVDSSVVNNSKTIKNLCGIALVISNMLP  147 (149)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhHhHhHHHHhhc-CCCCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999854    5789999999999999999999999875 45678999999999999999999998763



>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure