Citrus Sinensis ID: 026818


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
MQKMAQGWFSQSSGTEDQLQKTTSSSSSSLLADWNSYAATRDADDGSGLAFGFDIESAVRSANDTVSGTFNVVSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALTSSVMRCFGR
cHHHHHHHHccccccccccccccccccccHHHHcHHHHcccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcc
ccHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcc
mqkmaqgwfsqssgtedqlqkttsssssSLLADWNsyaatrdaddgsglafgFDIESAVrsandtvsgtFNVVSKgvrdlpgnlqsatstvpsgkALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIigsffalrgpknqlahmsskerlpftlgfIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAIsyfpggsagMKFLSSALTSSVMRCFGR
mqkmaqgwfsqssgtedqlqkTTSSSSSSLLADWNSYAATRDADDGSGLAFGFDIESAVRSANDTVSGTFNVVSkgvrdlpgnlqSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALTSSVMRCFGR
MQKMAQGWFSQSSGTEDQLQKTTssssssLLADWNSYAATRDADDGSGLAFGFDIESAVRSANDTVSGTFNVVSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALTSSVMRCFGR
*********************************WNSYAA******GSGLAFGFDIESAVRSANDTVSGTFNVVSKGVRDL**********VPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALT*********
******G******************************************************************************SATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALTSSVMRCFG*
******************************LADWNSYAATRDADDGSGLAFGFDIESAVRSANDTVSGTFNVVSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALTSSVMRCFGR
****************************************************************T**GTF*V**KGVRDL****QSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALTSSVMRCFGR
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
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MQKMAQGWFSQSSGTEDQLQKTTSSSSSSLLADWNSYAATRDADDGSGLAFGFDIESAVRSANDTVSGTFNVVSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALTSSVMRCFGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query232 2.2.26 [Sep-21-2011]
P38166215 Protein transport protein yes no 0.840 0.906 0.287 1e-16
Q9P6K1201 Protein transport protein yes no 0.594 0.686 0.308 1e-11
Q9CSV6209 Vesicle transport protein yes no 0.405 0.449 0.329 1e-05
O95562160 Vesicle transport protein yes no 0.413 0.6 0.32 0.0001
Q8WV19159 Vesicle transport protein no no 0.534 0.779 0.310 0.0002
Q8VD57159 Vesicle transport protein no no 0.409 0.597 0.33 0.0006
>sp|P38166|SFT2_YEAST Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1 Back     alignment and function desciption
 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 14/209 (6%)

Query: 20  QKTTSSSSSSLLADWNSYAATRDADDGSGLAFGFDIESA-------VRSANDTVSGTFNV 72
           ++  S   +SL    N +  TR  +       GF+ ESA         S N      +  
Sbjct: 3   EEPPSDQVNSLRDSLNRWNQTRQQNSQ-----GFN-ESAKTLFSSWADSLNTRAQDIYQT 56

Query: 73  VSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALC 132
           +    +DL  + + +   +   + ++ F  FL  G    F   T   PV+   P+KF L 
Sbjct: 57  LPVSRQDLVQDQEPSWFQLSRTERMVLFVCFLL-GATACFTLCTFLFPVLAAKPRKFGLL 115

Query: 133 FTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLF 192
           +T+G    + +F  L GP   L H++++ERLPF++ F  +   TIY +    + +L++  
Sbjct: 116 WTMGSLLFVLAFGVLMGPLAYLKHLTARERLPFSMFFFATCFMTIYFAAFSKNTVLTITC 175

Query: 193 SVIQVLALAYYAISYFPGGSAGMKFLSSA 221
           ++++++A+ YYAISYFP G+ G++ LSSA
Sbjct: 176 ALLELVAVIYYAISYFPFGATGLRMLSSA 204




Nonessential protein required for the fusion of transport vesicles derived from the endocytic pathway with the Golgi complex. Can be partially replaced by GOT1.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|Q9P6K1|SFT2_SCHPO Protein transport protein sft2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sft2 PE=3 SV=1 Back     alignment and function description
>sp|Q9CSV6|SFT2C_MOUSE Vesicle transport protein SFT2C OS=Mus musculus GN=Sft2d3 PE=2 SV=2 Back     alignment and function description
>sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1 Back     alignment and function description
>sp|Q8WV19|SFT2A_HUMAN Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1 Back     alignment and function description
>sp|Q8VD57|SFT2B_MOUSE Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
255582802231 Protein transport protein SFT2, putative 0.991 0.995 0.822 1e-102
449444024230 PREDICTED: protein transport protein SFT 0.978 0.986 0.8 1e-101
18416771225 Got1/Sft2-like vescicle transport protei 0.965 0.995 0.821 1e-100
62321002225 hypothetical protein [Arabidopsis thalia 0.965 0.995 0.817 2e-99
225462017232 PREDICTED: protein transport protein SFT 0.987 0.987 0.808 4e-99
297793081230 hypothetical protein ARALYDRAFT_495689 [ 0.982 0.991 0.790 6e-99
15241114230 Got1/Sft2-like vescicle transport protei 0.982 0.991 0.786 8e-99
356566349220 PREDICTED: protein transport protein SFT 0.943 0.995 0.779 2e-97
351727777220 uncharacterized protein LOC100306412 [Gl 0.943 0.995 0.784 3e-97
297799352226 hypothetical protein ARALYDRAFT_492154 [ 0.974 1.0 0.803 3e-97
>gi|255582802|ref|XP_002532175.1| Protein transport protein SFT2, putative [Ricinus communis] gi|223528143|gb|EEF30212.1| Protein transport protein SFT2, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/231 (82%), Positives = 210/231 (90%), Gaps = 1/231 (0%)

Query: 1   MQKMAQGWFSQSSGTEDQLQKTTSSSSSSLLADWNSYAATRDADDGSGLAFGFDIESAVR 60
           MQKMAQGWFS SSGT  + Q+    SSSSLLADWNSYAA++DAD+ SGL  GFD+E+ VR
Sbjct: 1   MQKMAQGWFS-SSGTSGEDQQQKPQSSSSLLADWNSYAASQDADESSGLGIGFDLEAVVR 59

Query: 61  SANDTVSGTFNVVSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLP 120
           SAND+VSGTFNVVSKGVRD+PG+ QSATS +PSGKALMYFGLFLA+GVFF+FIAF +FLP
Sbjct: 60  SANDSVSGTFNVVSKGVRDIPGSFQSATSNIPSGKALMYFGLFLATGVFFVFIAFALFLP 119

Query: 121 VMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVS 180
           V+VLMPQKFA+CFT+GC FII SF AL+GPKNQ AHM+SKERLPFTLGFIGSMAGTIYVS
Sbjct: 120 VIVLMPQKFAICFTLGCVFIIASFVALKGPKNQFAHMTSKERLPFTLGFIGSMAGTIYVS 179

Query: 181 MVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALTSSVMRCFG 231
           MVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSS+L SSV RCFG
Sbjct: 180 MVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSSLISSVTRCFG 230




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444024|ref|XP_004139775.1| PREDICTED: protein transport protein SFT2-like [Cucumis sativus] gi|449502881|ref|XP_004161769.1| PREDICTED: protein transport protein SFT2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18416771|ref|NP_567749.1| Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] gi|88196739|gb|ABD43012.1| At4g26550 [Arabidopsis thaliana] gi|332659817|gb|AEE85217.1| Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|62321002|dbj|BAD94047.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225462017|ref|XP_002273570.1| PREDICTED: protein transport protein SFT2 [Vitis vinifera] gi|296089976|emb|CBI39795.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297793081|ref|XP_002864425.1| hypothetical protein ARALYDRAFT_495689 [Arabidopsis lyrata subsp. lyrata] gi|297310260|gb|EFH40684.1| hypothetical protein ARALYDRAFT_495689 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15241114|ref|NP_200413.1| Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] gi|9758622|dbj|BAB09284.1| unnamed protein product [Arabidopsis thaliana] gi|332009327|gb|AED96710.1| Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356566349|ref|XP_003551395.1| PREDICTED: protein transport protein SFT2-like [Glycine max] Back     alignment and taxonomy information
>gi|351727777|ref|NP_001238452.1| uncharacterized protein LOC100306412 [Glycine max] gi|255628455|gb|ACU14572.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297799352|ref|XP_002867560.1| hypothetical protein ARALYDRAFT_492154 [Arabidopsis lyrata subsp. lyrata] gi|297313396|gb|EFH43819.1| hypothetical protein ARALYDRAFT_492154 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
TAIR|locus:2131448225 AT4G26550 "AT4G26550" [Arabido 0.965 0.995 0.804 2.1e-93
TAIR|locus:2161800230 AT5G56020 "AT5G56020" [Arabido 0.982 0.991 0.782 1e-91
GENEDB_PFALCIPARUM|PF13_0124259 PF13_0124 "hypothetical protei 0.625 0.559 0.356 5.7e-20
UNIPROTKB|Q8IE98259 PF13_0124 "SFT2-like protein, 0.625 0.559 0.356 5.7e-20
ASPGD|ASPL0000060369215 AN1297 [Emericella nidulans (t 0.525 0.567 0.395 1.2e-19
WB|WBGene00007690235 C18E9.10 [Caenorhabditis elega 0.525 0.519 0.344 3.1e-19
CGD|CAL0000736217 SFT2 [Candida albicans (taxid: 0.556 0.594 0.384 8.3e-19
UNIPROTKB|Q59WF9217 SFT2 "Putative uncharacterized 0.556 0.594 0.384 8.3e-19
SGD|S000000198215 SFT2 "Tetra-spanning membrane 0.706 0.762 0.303 2.2e-18
CGD|CAL0002420215 orf19.3184 [Candida albicans ( 0.556 0.6 0.353 3.7e-16
TAIR|locus:2131448 AT4G26550 "AT4G26550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 185/230 (80%), Positives = 204/230 (88%)

Query:     4 MAQGWFSQS-SGTEDQLQKTTXXXXXXLLADWNSYAATRDADDGSGLAFGFDIESAVRSA 62
             M+QGWFS   S T DQ Q++       LLADWNSYAA+RD ++  G +FGFDIESAVRSA
Sbjct:     1 MSQGWFSMGGSSTVDQQQQS----GSSLLADWNSYAASRDFEESGG-SFGFDIESAVRSA 55

Query:    63 NDTVSGTFNVVSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVM 122
             NDTVSGTF+VVSKGVRD+PG+LQSATS++PSGKALMYFGL LASGVFFIFIAFTMFLPVM
Sbjct:    56 NDTVSGTFSVVSKGVRDIPGSLQSATSSMPSGKALMYFGLLLASGVFFIFIAFTMFLPVM 115

Query:   123 VLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMV 182
             VLMPQKFA+CFT+GCGFIIGSFFALRGPKNQLAHMSS ERLP TLGFI +M GTIYVSMV
Sbjct:   116 VLMPQKFAICFTLGCGFIIGSFFALRGPKNQLAHMSSMERLPSTLGFIATMVGTIYVSMV 175

Query:   183 LHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALTSSVMRCFGR 232
             LHSYILSVLFSV+QVLAL YY ISYFPGGS+GM+FLSSALTSS +R FGR
Sbjct:   176 LHSYILSVLFSVLQVLALVYYCISYFPGGSSGMRFLSSALTSSALRVFGR 225




GO:0003674 "molecular_function" evidence=ND
GO:0006810 "transport" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2161800 AT5G56020 "AT5G56020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF13_0124 PF13_0124 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IE98 PF13_0124 "SFT2-like protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ASPGD|ASPL0000060369 AN1297 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00007690 C18E9.10 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
CGD|CAL0000736 SFT2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59WF9 SFT2 "Putative uncharacterized protein SFT21" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000000198 SFT2 "Tetra-spanning membrane protein found mostly in the late Golgi" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0002420 orf19.3184 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
pfam04178116 pfam04178, Got1, Got1/Sft2-like family 5e-30
COG5102201 COG5102, SFT2, Membrane protein involved in ER to 4e-21
>gnl|CDD|217941 pfam04178, Got1, Got1/Sft2-like family Back     alignment and domain information
 Score =  107 bits (270), Expect = 5e-30
 Identities = 55/118 (46%), Positives = 75/118 (63%), Gaps = 3/118 (2%)

Query: 105 ASGVFFIFIA-FTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERL 163
             GV F  +  F +FLPV++L P  FAL  T+G    +GS   L GPK QL  M SKERL
Sbjct: 1   KIGVLFFGLGFFFLFLPVLLLFP--FALLLTLGNILFLGSTGFLIGPKKQLKFMFSKERL 58

Query: 164 PFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSA 221
           P T+ F  S+  T+Y +++L SY L++LFS+ Q+LAL +Y +SY PGG  G+K + S 
Sbjct: 59  PATIVFFVSLVLTLYFALILKSYGLTLLFSIFQILALIWYLLSYIPGGRPGVKKVLSL 116


Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments. Length = 116

>gnl|CDD|227433 COG5102, SFT2, Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 232
KOG2887175 consensus Membrane protein involved in ER to Golgi 100.0
COG5102201 SFT2 Membrane protein involved in ER to Golgi tran 100.0
PF04178118 Got1: Got1/Sft2-like family ; InterPro: IPR007305 100.0
KOG1743137 consensus Ferric reductase-like proteins [Inorgani 91.16
COG5120129 GOT1 Membrane protein involved in Golgi transport 87.19
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
Probab=100.00  E-value=1.7e-49  Score=337.16  Aligned_cols=171  Identities=44%  Similarity=0.683  Sum_probs=154.5

Q ss_pred             HHHHhhhhcccccccceeec-cccccCCccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 026818           55 IESAVRSANDTVSGTFNVVS-KGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCF  133 (232)
Q Consensus        55 ~~~~~~s~~~~~s~~~~~~~-~g~~~~~~~~qs~~~~Ls~~qRl~gF~~c~~~g~~f~~ls~~lflPll~l~P~KFAllf  133 (232)
                      -..+.+++||.++|....-. .+.++.|+..|++.++||++||+++|++|++.|++|++++.++| |+....|||||++|
T Consensus         3 ~l~~~~~~~~~~sg~d~~~~~~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf-~v~~~~~~kFal~~   81 (175)
T KOG2887|consen    3 KLRSARSANDVLSGQDPGDHQTEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLF-PVLVVSPRKFALLY   81 (175)
T ss_pred             hhhhhHhhhhcccCCCCCccccccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccceeehhH
Confidence            34444566666666654332 35567788889888999999999999999999999999998775 88888999999999


Q ss_pred             hhhHHHHHhHhhhhhcHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 026818          134 TVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSA  213 (232)
Q Consensus       134 TlGsil~l~S~~FL~GP~~qlk~M~s~~Rl~~Ti~Yi~Slv~TLy~al~~~s~iLtll~~iiQ~~AllwY~lSYiP~G~~  213 (232)
                      |+||+++++|++||+||++|+|||++|+|+++|+.|++++++|||+|+++||++|+++++|+|++|++||++||||||++
T Consensus        82 TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~~ks~iLtllf~ilq~laliwYslSyiP~g~~  161 (175)
T KOG2887|consen   82 TLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALWLKSKILTLLFCILQVLALIWYSLSYIPFGRS  161 (175)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 026818          214 GMKFLSSALTSSV  226 (232)
Q Consensus       214 ~lk~~~s~~~s~~  226 (232)
                      |++++.+++.+..
T Consensus       162 gv~~~~s~~~~s~  174 (175)
T KOG2887|consen  162 GVSKLSSAFTSSL  174 (175)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998864



>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae Back     alignment and domain information
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00