Citrus Sinensis ID: 026818
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 232 | ||||||
| 255582802 | 231 | Protein transport protein SFT2, putative | 0.991 | 0.995 | 0.822 | 1e-102 | |
| 449444024 | 230 | PREDICTED: protein transport protein SFT | 0.978 | 0.986 | 0.8 | 1e-101 | |
| 18416771 | 225 | Got1/Sft2-like vescicle transport protei | 0.965 | 0.995 | 0.821 | 1e-100 | |
| 62321002 | 225 | hypothetical protein [Arabidopsis thalia | 0.965 | 0.995 | 0.817 | 2e-99 | |
| 225462017 | 232 | PREDICTED: protein transport protein SFT | 0.987 | 0.987 | 0.808 | 4e-99 | |
| 297793081 | 230 | hypothetical protein ARALYDRAFT_495689 [ | 0.982 | 0.991 | 0.790 | 6e-99 | |
| 15241114 | 230 | Got1/Sft2-like vescicle transport protei | 0.982 | 0.991 | 0.786 | 8e-99 | |
| 356566349 | 220 | PREDICTED: protein transport protein SFT | 0.943 | 0.995 | 0.779 | 2e-97 | |
| 351727777 | 220 | uncharacterized protein LOC100306412 [Gl | 0.943 | 0.995 | 0.784 | 3e-97 | |
| 297799352 | 226 | hypothetical protein ARALYDRAFT_492154 [ | 0.974 | 1.0 | 0.803 | 3e-97 |
| >gi|255582802|ref|XP_002532175.1| Protein transport protein SFT2, putative [Ricinus communis] gi|223528143|gb|EEF30212.1| Protein transport protein SFT2, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/231 (82%), Positives = 210/231 (90%), Gaps = 1/231 (0%)
Query: 1 MQKMAQGWFSQSSGTEDQLQKTTSSSSSSLLADWNSYAATRDADDGSGLAFGFDIESAVR 60
MQKMAQGWFS SSGT + Q+ SSSSLLADWNSYAA++DAD+ SGL GFD+E+ VR
Sbjct: 1 MQKMAQGWFS-SSGTSGEDQQQKPQSSSSLLADWNSYAASQDADESSGLGIGFDLEAVVR 59
Query: 61 SANDTVSGTFNVVSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLP 120
SAND+VSGTFNVVSKGVRD+PG+ QSATS +PSGKALMYFGLFLA+GVFF+FIAF +FLP
Sbjct: 60 SANDSVSGTFNVVSKGVRDIPGSFQSATSNIPSGKALMYFGLFLATGVFFVFIAFALFLP 119
Query: 121 VMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVS 180
V+VLMPQKFA+CFT+GC FII SF AL+GPKNQ AHM+SKERLPFTLGFIGSMAGTIYVS
Sbjct: 120 VIVLMPQKFAICFTLGCVFIIASFVALKGPKNQFAHMTSKERLPFTLGFIGSMAGTIYVS 179
Query: 181 MVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALTSSVMRCFG 231
MVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSS+L SSV RCFG
Sbjct: 180 MVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSSLISSVTRCFG 230
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444024|ref|XP_004139775.1| PREDICTED: protein transport protein SFT2-like [Cucumis sativus] gi|449502881|ref|XP_004161769.1| PREDICTED: protein transport protein SFT2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|18416771|ref|NP_567749.1| Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] gi|88196739|gb|ABD43012.1| At4g26550 [Arabidopsis thaliana] gi|332659817|gb|AEE85217.1| Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|62321002|dbj|BAD94047.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|225462017|ref|XP_002273570.1| PREDICTED: protein transport protein SFT2 [Vitis vinifera] gi|296089976|emb|CBI39795.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297793081|ref|XP_002864425.1| hypothetical protein ARALYDRAFT_495689 [Arabidopsis lyrata subsp. lyrata] gi|297310260|gb|EFH40684.1| hypothetical protein ARALYDRAFT_495689 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15241114|ref|NP_200413.1| Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] gi|9758622|dbj|BAB09284.1| unnamed protein product [Arabidopsis thaliana] gi|332009327|gb|AED96710.1| Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356566349|ref|XP_003551395.1| PREDICTED: protein transport protein SFT2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|351727777|ref|NP_001238452.1| uncharacterized protein LOC100306412 [Glycine max] gi|255628455|gb|ACU14572.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|297799352|ref|XP_002867560.1| hypothetical protein ARALYDRAFT_492154 [Arabidopsis lyrata subsp. lyrata] gi|297313396|gb|EFH43819.1| hypothetical protein ARALYDRAFT_492154 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 232 | ||||||
| TAIR|locus:2131448 | 225 | AT4G26550 "AT4G26550" [Arabido | 0.965 | 0.995 | 0.804 | 2.1e-93 | |
| TAIR|locus:2161800 | 230 | AT5G56020 "AT5G56020" [Arabido | 0.982 | 0.991 | 0.782 | 1e-91 | |
| GENEDB_PFALCIPARUM|PF13_0124 | 259 | PF13_0124 "hypothetical protei | 0.625 | 0.559 | 0.356 | 5.7e-20 | |
| UNIPROTKB|Q8IE98 | 259 | PF13_0124 "SFT2-like protein, | 0.625 | 0.559 | 0.356 | 5.7e-20 | |
| ASPGD|ASPL0000060369 | 215 | AN1297 [Emericella nidulans (t | 0.525 | 0.567 | 0.395 | 1.2e-19 | |
| WB|WBGene00007690 | 235 | C18E9.10 [Caenorhabditis elega | 0.525 | 0.519 | 0.344 | 3.1e-19 | |
| CGD|CAL0000736 | 217 | SFT2 [Candida albicans (taxid: | 0.556 | 0.594 | 0.384 | 8.3e-19 | |
| UNIPROTKB|Q59WF9 | 217 | SFT2 "Putative uncharacterized | 0.556 | 0.594 | 0.384 | 8.3e-19 | |
| SGD|S000000198 | 215 | SFT2 "Tetra-spanning membrane | 0.706 | 0.762 | 0.303 | 2.2e-18 | |
| CGD|CAL0002420 | 215 | orf19.3184 [Candida albicans ( | 0.556 | 0.6 | 0.353 | 3.7e-16 |
| TAIR|locus:2131448 AT4G26550 "AT4G26550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 185/230 (80%), Positives = 204/230 (88%)
Query: 4 MAQGWFSQS-SGTEDQLQKTTXXXXXXLLADWNSYAATRDADDGSGLAFGFDIESAVRSA 62
M+QGWFS S T DQ Q++ LLADWNSYAA+RD ++ G +FGFDIESAVRSA
Sbjct: 1 MSQGWFSMGGSSTVDQQQQS----GSSLLADWNSYAASRDFEESGG-SFGFDIESAVRSA 55
Query: 63 NDTVSGTFNVVSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVM 122
NDTVSGTF+VVSKGVRD+PG+LQSATS++PSGKALMYFGL LASGVFFIFIAFTMFLPVM
Sbjct: 56 NDTVSGTFSVVSKGVRDIPGSLQSATSSMPSGKALMYFGLLLASGVFFIFIAFTMFLPVM 115
Query: 123 VLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMV 182
VLMPQKFA+CFT+GCGFIIGSFFALRGPKNQLAHMSS ERLP TLGFI +M GTIYVSMV
Sbjct: 116 VLMPQKFAICFTLGCGFIIGSFFALRGPKNQLAHMSSMERLPSTLGFIATMVGTIYVSMV 175
Query: 183 LHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSALTSSVMRCFGR 232
LHSYILSVLFSV+QVLAL YY ISYFPGGS+GM+FLSSALTSS +R FGR
Sbjct: 176 LHSYILSVLFSVLQVLALVYYCISYFPGGSSGMRFLSSALTSSALRVFGR 225
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| TAIR|locus:2161800 AT5G56020 "AT5G56020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| GENEDB_PFALCIPARUM|PF13_0124 PF13_0124 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8IE98 PF13_0124 "SFT2-like protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000060369 AN1297 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| WB|WBGene00007690 C18E9.10 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| CGD|CAL0000736 SFT2 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q59WF9 SFT2 "Putative uncharacterized protein SFT21" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
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| SGD|S000000198 SFT2 "Tetra-spanning membrane protein found mostly in the late Golgi" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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| CGD|CAL0002420 orf19.3184 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 232 | |||
| pfam04178 | 116 | pfam04178, Got1, Got1/Sft2-like family | 5e-30 | |
| COG5102 | 201 | COG5102, SFT2, Membrane protein involved in ER to | 4e-21 |
| >gnl|CDD|217941 pfam04178, Got1, Got1/Sft2-like family | Back alignment and domain information |
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Score = 107 bits (270), Expect = 5e-30
Identities = 55/118 (46%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 105 ASGVFFIFIA-FTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERL 163
GV F + F +FLPV++L P FAL T+G +GS L GPK QL M SKERL
Sbjct: 1 KIGVLFFGLGFFFLFLPVLLLFP--FALLLTLGNILFLGSTGFLIGPKKQLKFMFSKERL 58
Query: 164 PFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSA 221
P T+ F S+ T+Y +++L SY L++LFS+ Q+LAL +Y +SY PGG G+K + S
Sbjct: 59 PATIVFFVSLVLTLYFALILKSYGLTLLFSIFQILALIWYLLSYIPGGRPGVKKVLSL 116
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Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments. Length = 116 |
| >gnl|CDD|227433 COG5102, SFT2, Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 232 | |||
| KOG2887 | 175 | consensus Membrane protein involved in ER to Golgi | 100.0 | |
| COG5102 | 201 | SFT2 Membrane protein involved in ER to Golgi tran | 100.0 | |
| PF04178 | 118 | Got1: Got1/Sft2-like family ; InterPro: IPR007305 | 100.0 | |
| KOG1743 | 137 | consensus Ferric reductase-like proteins [Inorgani | 91.16 | |
| COG5120 | 129 | GOT1 Membrane protein involved in Golgi transport | 87.19 |
| >KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
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Probab=100.00 E-value=1.7e-49 Score=337.16 Aligned_cols=171 Identities=44% Similarity=0.683 Sum_probs=154.5
Q ss_pred HHHHhhhhcccccccceeec-cccccCCccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 026818 55 IESAVRSANDTVSGTFNVVS-KGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCF 133 (232)
Q Consensus 55 ~~~~~~s~~~~~s~~~~~~~-~g~~~~~~~~qs~~~~Ls~~qRl~gF~~c~~~g~~f~~ls~~lflPll~l~P~KFAllf 133 (232)
-..+.+++||.++|....-. .+.++.|+..|++.++||++||+++|++|++.|++|++++.++| |+....|||||++|
T Consensus 3 ~l~~~~~~~~~~sg~d~~~~~~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf-~v~~~~~~kFal~~ 81 (175)
T KOG2887|consen 3 KLRSARSANDVLSGQDPGDHQTEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLF-PVLVVSPRKFALLY 81 (175)
T ss_pred hhhhhHhhhhcccCCCCCccccccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccceeehhH
Confidence 34444566666666654332 35567788889888999999999999999999999999998775 88888999999999
Q ss_pred hhhHHHHHhHhhhhhcHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 026818 134 TVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSA 213 (232)
Q Consensus 134 TlGsil~l~S~~FL~GP~~qlk~M~s~~Rl~~Ti~Yi~Slv~TLy~al~~~s~iLtll~~iiQ~~AllwY~lSYiP~G~~ 213 (232)
|+||+++++|++||+||++|+|||++|+|+++|+.|++++++|||+|+++||++|+++++|+|++|++||++||||||++
T Consensus 82 TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~~ks~iLtllf~ilq~laliwYslSyiP~g~~ 161 (175)
T KOG2887|consen 82 TLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALWLKSKILTLLFCILQVLALIWYSLSYIPFGRS 161 (175)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 026818 214 GMKFLSSALTSSV 226 (232)
Q Consensus 214 ~lk~~~s~~~s~~ 226 (232)
|++++.+++.+..
T Consensus 162 gv~~~~s~~~~s~ 174 (175)
T KOG2887|consen 162 GVSKLSSAFTSSL 174 (175)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998864
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| >COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion] | Back alignment and domain information |
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| >PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae | Back alignment and domain information |
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| >KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism] | Back alignment and domain information |
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| >COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00