Citrus Sinensis ID: 026854

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MISMTRKITDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAIES
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHccccccEccHHHHHHcccccccHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEEEEEEcHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHcccccccccHHHHHcc
Coil and Loop (DISEMBL)
MISMTRKITDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSklssgdskcgskvlhadkskdnslYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVAtiyapeiyptsarttgagVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASsllfpfetkgrELKDAVDAIES
Flexible Loop (DISEMBL)
mismtrkitdklksgfssFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVlhadkskdnsLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASsllfpfetkgrelKDAVDAIES
Low Complexity Region (SEG)
MISMTRKITDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPtsarttgagvasavgrvggMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAIES
Disordered region (IsUnstruct)
************KSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKL***********L******DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET**************
Disordered Region (DISOPRED)
********************TLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGREL*********
Disordered Region (DISEMBL)
********TDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKL*********KVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAIES
Disordered Region (DISPRO)
**S**RKI***LKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVD**ES
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISMTRKITDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAIES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.935	0.434	0.554	4e-63
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.879	0.372	0.373	7e-30
P30638	520	Putative transporter ZK63	yes	no	0.883	0.394	0.349	7e-30
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.875	0.370	0.376	8e-30
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.875	0.370	0.376	9e-30
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.857	0.363	0.369	3e-29
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.857	0.363	0.365	6e-29
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.875	0.370	0.376	2e-28
Q1LVS8	506	Putative transporter SVOP	no	no	0.883	0.405	0.304	3e-21
Q8N434	492	Putative transporter SVOP	no	no	0.939	0.443	0.285	6e-19

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  241 bits (614), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/220 (55%), Positives = 157/220 (71%), Gaps = 3/220 (1%)

Query: 10  DKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHA 69
           DK + GFS    L S  L++ T+LLWV+FF NAF+YYG VLLT++L++  ++C       
Sbjct: 275 DK-EPGFS-LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQL 332

Query: 70  DKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAV 129
             S D + Y DVFI SFAE PGL++SA +VD++GRK SM  M    CIFLLPL+ HQS  
Sbjct: 333 RNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPF 391

Query: 130 VTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVT 189
           +TTVLLFG R+C +   TV  IYAPEIYPT+ RTTG GV S+VGR+GG++CPLVAVGLV 
Sbjct: 392 ITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVH 451

Query: 190 SCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDA 229
            CH  +AV+LFEVV +++     LFPFET GR+L D++ A
Sbjct: 452 GCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISA 491

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  130 bits (327), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/214 (37%), Positives = 120/214 (56%), Gaps = 10/214 (4%)

Query: 22  LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKL-SSGDSKCGSKVLHADKSKDN----- 75
           LFS +   TT+LLW ++F+NAFSYYG VLLT++L  +GD    S    A K K +     
Sbjct: 308 LFSPQFRCTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEY 367

Query: 76  ---SLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTT 132
                Y D+  T+ +E PGL+++  I+D++GRK +M + F++     L L       V T
Sbjct: 368 LTVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLT 427

Query: 133 VLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH 192
           V LF  R   +G    A +Y PE+YPT+ R  G G  S + RVG ++ P +A  ++ S  
Sbjct: 428 VFLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES-S 486

Query: 193 LRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
           + L V+++    VLA  +S   P ETKGR L+++
Sbjct: 487 IYLTVLVYSGCCVLAAVASCFLPIETKGRGLQES 520

Xenopus laevis (taxid: 8355)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  130 bits (327), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 7/212 (3%)

Query: 21  TLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKD------ 74
            L S  L +TT+LLW ++   AFSYYG VL T+ L     +C   +       +      
Sbjct: 309 NLLSPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLT 368

Query: 75  NSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVL 134
            S Y D+  T+ AE PGLI++ +I++  GRK +M L + +  IF   L F       TVL
Sbjct: 369 RSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVL 428

Query: 135 LFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLR 194
           +F  R   +G    A +Y PE+YPT+ R  G G  SA+ R+G +V P +A  + +   L 
Sbjct: 429 IFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIA-QVASEKSLS 487

Query: 195 LAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
           L + ++    +L + +SL  P ETKGR++ D+
Sbjct: 488 LPIGIYGTAAILGLIASLSLPIETKGRQMMDS 519

Caenorhabditis elegans (taxid: 6239)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  130 bits (327), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 12/215 (5%)

Query: 22  LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKS 72
           LF+     TT+LLW ++F+NAFSYYG VLLT++L      CG         +K   A + 
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query: 73  KDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTT 132
                Y+D+  T+ +E PG++++  I+D++GRK +M L FV+     L L       V T
Sbjct: 368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLT 427

Query: 133 VLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA-VGLVTSC 191
           +LLF  R   +G    A +Y PE+YPT+ R  G G  S + RVG ++ P +A V L +S 
Sbjct: 428 LLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSV 487

Query: 192 HLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
           +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct: 488 YLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Homo sapiens (taxid: 9606)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  130 bits (326), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 12/215 (5%)

Query: 22  LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKS 72
           LF+     TT+LLW ++F+NAFSYYG VLLT++L      CG         +K   A + 
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query: 73  KDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTT 132
                Y+D+  T+ +E PG++++  I+D++GRK +M L FV+     L L       V T
Sbjct: 368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLT 427

Query: 133 VLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA-VGLVTSC 191
           +LLF  R   +G    A +Y PE+YPT+ R  G G  S + RVG ++ P +A V L +S 
Sbjct: 428 LLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSV 487

Query: 192 HLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
           +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct: 488 YLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Pongo abelii (taxid: 9601)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 123/219 (56%), Gaps = 20/219 (9%)

Query: 22  LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKL-SSGD------------SKCGSKVLH 68
           LF+     TT+LLW ++F+NAFSYYG VLLT++L  +GD            +KC     +
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query: 69  ADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSA 128
             K      Y+D+  T+ +E PG++++  ++D++GRK +M L FV+  +  L L      
Sbjct: 368 LSKED----YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGR 423

Query: 129 VVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA-VGL 187
            V T+LLF  R   +G    A +Y PE+YPT+ R  G G  S + RVG ++ P +A V L
Sbjct: 424 NVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML 483

Query: 188 VTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
            +S +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct: 484 ESSVYLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

Rattus norvegicus (taxid: 10116)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  127 bits (320), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 123/219 (56%), Gaps = 20/219 (9%)

Query: 22  LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKL-SSGD------------SKCGSKVLH 68
           LF+     TT+LLW ++F+NAFSYYG VLLT++L  +GD            +KC     +
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query: 69  ADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSA 128
             K      Y+D+  T+ +E PG++++  ++D++GRK +M L F++  +  L L      
Sbjct: 368 LSKED----YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGR 423

Query: 129 VVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA-VGL 187
            V T+LLF  R   +G    A +Y PE+YPT+ R  G G  S + RVG ++ P +A V L
Sbjct: 424 NVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML 483

Query: 188 VTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
            +S +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct: 484 ESSVYLTLAV--YSGCCLLAGVASCFLPIETKGRALQES 520

Mus musculus (taxid: 10090)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 122/215 (56%), Gaps = 12/215 (5%)

Query: 22  LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKL-SSGDSKCGSKVLHADKSK------- 73
           LF+     TT+LLW ++F+NAFSYYG VLLT++L  +GD    S    A ++K       
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query: 74  -DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTT 132
                Y+D+  T+ +E PG++++  I+D++GRK +M L FV+     L L       + T
Sbjct: 368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLT 427

Query: 133 VLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA-VGLVTSC 191
           +LLF  R   +G    A +Y PE+YPT+ R  G G  S + RVG ++ P +A V L +S 
Sbjct: 428 LLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSV 487

Query: 192 HLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
           +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct: 488 YLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Bos taurus (taxid: 9913)

>sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 115/220 (52%), Gaps = 15/220 (6%)

Query: 21  TLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKC------GSKVLHADKSK- 73
           TL S    RT++LLW  +F  +FSYYG+VL +S+L   +  C        ++ H  +   
Sbjct: 288 TLISSAFRRTSLLLWYSWFVASFSYYGSVLSSSELLEKNLLCVTDPDLEHQIKHIQEETL 347

Query: 74  ------DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQS 127
                 ++  Y  + I+   E+  + L+ I+++ +GRK SMV++ +L+  F + +    +
Sbjct: 348 CYCIPFNSDDYQTLLISCLGEVALIPLNIILLNIVGRKYSMVILLLLSAFFFMLVNICTT 407

Query: 128 AVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGL 187
            +  T+LLF +R   +    V  IY  E+YPTS R+ G G  ++  R+GGM+ P +A  L
Sbjct: 408 MLGFTILLFLLRSVVSMNFNVVYIYTAEVYPTSVRSIGMGFCTSFSRIGGMIAPFIAQVL 467

Query: 188 VTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRE-LKDA 226
           ++   + LA+  F    ++        P ET+GR  L+DA
Sbjct: 468 MSK-SVILALSPFATACIICAIGVFFLPIETRGRALLQDA 506

Danio rerio (taxid: 7955)

>sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2

 Score = 94.4 bits (233), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 17/235 (7%)

Query: 7   KITDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSK- 65
           K+ + +      F  L   K +RTT+ +WV++   +F+YYG +L +++L   D  CGSK 
Sbjct: 257 KLVEPVLEKRGRFADLLDAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKS 316

Query: 66  -----VLHADKSKDNSL----------YVDVFITSFAELPGLILSAIIVDKIGRKLSMVL 110
                V   D  +  S           Y  + I++  E+    L+ + ++ +GR+LS+ +
Sbjct: 317 DSAVVVTGGDSGESQSPCYCHMFAPSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSI 376

Query: 111 MFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVAS 170
                 +F L L    S+      LF +R           IY  E+YPT+ R  G G + 
Sbjct: 377 TMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRALGMGTSG 436

Query: 171 AVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKD 225
           ++ R+G MV P ++  L+++  L  A+ LF  V V+   S+   P ETKGR L+ 
Sbjct: 437 SLCRIGAMVAPFISQVLMSASILG-ALCLFSSVCVVCAISAFTLPIETKGRALQQ 490

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
224118680	492	predicted protein [Populus trichocarpa]	0.987	0.465	0.694	9e-83
224118546	493	predicted protein [Populus trichocarpa]	0.991	0.466	0.647	4e-77
147767934	461	hypothetical protein VITISV_042940 [Viti	0.978	0.492	0.627	1e-74
225443470	495	PREDICTED: synaptic vesicle 2-related pr	0.978	0.458	0.622	8e-74
255574249	497	sugar transporter, putative [Ricinus com	0.987	0.460	0.646	1e-73
255573803	498	sugar transporter, putative [Ricinus com	0.887	0.413	0.611	2e-69
383932368	482	MFS [Gossypium hirsutum]	0.862	0.414	0.655	4e-69
224095094	485	predicted protein [Populus trichocarpa]	0.922	0.441	0.595	6e-66
224122710	503	predicted protein [Populus trichocarpa]	0.922	0.425	0.586	6e-65
357120730	507	PREDICTED: synaptic vesicle 2-related pr	0.913	0.418	0.553	7e-65

>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (799), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 159/229 (69%), Positives = 187/229 (81%)

Query: 1   MISMTRKITDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDS 60
           ++S TR +    KSGFSSF  LFS KLIRTT+LLW+LFF NAFSYYG +LLTS+LSS + 
Sbjct: 255 LLSSTRNLVSDFKSGFSSFVMLFSSKLIRTTLLLWLLFFGNAFSYYGIILLTSELSSEEG 314

Query: 61  KCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLL 120
           KC S VL ++  +D+SLY++VFITS AELPG++LSAIIVD+ GRKLSM  MFVLACIFLL
Sbjct: 315 KCASTVLRSENLQDDSLYINVFITSLAELPGILLSAIIVDRFGRKLSMAFMFVLACIFLL 374

Query: 121 PLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVC 180
           PLVFHQ A +TT LLFG RMCA GT TVA IYAPE+YPT  R TGAGVA+AVGR+GGMVC
Sbjct: 375 PLVFHQHATLTTALLFGARMCAIGTFTVAAIYAPEVYPTVIRATGAGVANAVGRIGGMVC 434

Query: 181 PLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDA 229
           PLVAVGLV  CHL+ A+ILFEVV V+++   LLFPFET GREL D++ A
Sbjct: 435 PLVAVGLVAGCHLKEAIILFEVVIVISVVCVLLFPFETSGRELSDSLAA 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 149/230 (64%), Positives = 187/230 (81%)

Query: 1   MISMTRKITDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDS 60
           ++S TRK+    KS FSSFF LFS  LI+TT+LLWVL F N FSYYG +LLTS+LSS   
Sbjct: 254 LLSSTRKVIVDFKSVFSSFFMLFSSTLIQTTLLLWVLLFGNVFSYYGIILLTSELSSQQG 313

Query: 61  KCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLL 120
           KCGS +L ++  +++SLY++VF+TS AELPGL+LSAIIVD++GRKLSM LM VL CIFL 
Sbjct: 314 KCGSTILSSENLQNDSLYINVFVTSLAELPGLLLSAIIVDRLGRKLSMALMLVLGCIFLF 373

Query: 121 PLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVC 180
           PL+F+ SA +TT +LFG RMC  G+ T+AT+YAPE+YPT+ R TGAGVAS+VGR+GGM+C
Sbjct: 374 PLLFNVSANLTTAMLFGARMCVMGSFTIATLYAPELYPTAVRATGAGVASSVGRIGGMIC 433

Query: 181 PLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAI 230
           PLVAVGLVT C+L  A+ILFEVV  ++  SSLLFPFETKG+EL D+VD +
Sbjct: 434 PLVAVGLVTGCYLTEAIILFEVVMAISAFSSLLFPFETKGQELSDSVDHV 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767934|emb|CAN64534.1| hypothetical protein VITISV_042940 [Vitis vinifera]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/228 (62%), Positives = 171/228 (75%), Gaps = 1/228 (0%)

Query: 5   TRKITDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGS 64
           + K  D    G SS F L S KL+R+T+LLW++FF NAFSYYG VLLTS+L++G +KCG 
Sbjct: 230 SHKDIDSNMGGISSLFMLLSPKLLRSTLLLWMVFFGNAFSYYGLVLLTSELNNGQNKCGV 289

Query: 65  KVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF 124
             L ++K++D + Y DVFITSFAE PGL+LSA  VD +GRKLSM  MF L CIFLLPLVF
Sbjct: 290 AELQSEKTQDIN-YKDVFITSFAEFPGLLLSAATVDILGRKLSMSAMFFLCCIFLLPLVF 348

Query: 125 HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA 184
           HQ   +TT LLFG R+C T T TV  IYAPEIYPTS RTTG GVAS+VGR+GGM+CPLVA
Sbjct: 349 HQPQGLTTALLFGARICITVTFTVVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVA 408

Query: 185 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAIES 232
           VGLV  CH   AVILFE+V  ++    +LFPFETKGRELKD + + E 
Sbjct: 409 VGLVHGCHQAAAVILFEIVIFISGICVILFPFETKGRELKDTLSSSEQ 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera]

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 142/228 (62%), Positives = 170/228 (74%), Gaps = 1/228 (0%)

Query: 5   TRKITDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGS 64
           + K  D    G SS F L S KL+R+T+LLW++FF NAFSYYG VLLTS+L++  +KCG 
Sbjct: 264 SHKDIDSNMGGISSLFMLLSPKLLRSTLLLWMVFFGNAFSYYGLVLLTSELNNEQNKCGV 323

Query: 65  KVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF 124
             L ++K++D + Y DVFITSFAE PGL+LSA  VD +GRKLSM  MF L CIFLLPLVF
Sbjct: 324 AELQSEKTQDIN-YKDVFITSFAEFPGLLLSAATVDILGRKLSMSAMFFLCCIFLLPLVF 382

Query: 125 HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA 184
           HQ   +TT LLFG R+C T T TV  IYAPEIYPTS RTTG GVAS+VGR+GGM+CPLVA
Sbjct: 383 HQPQGLTTALLFGARICITVTFTVVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVA 442

Query: 185 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAIES 232
           VGLV  CH   AVILFE+V  ++    +LFPFETKGRELKD + + E 
Sbjct: 443 VGLVHGCHQAAAVILFEIVIFISGICVILFPFETKGRELKDTLSSSEQ 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/229 (64%), Positives = 180/229 (78%)

Query: 4   MTRKITDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG 63
           M R+    LKSGFSSF  LFS  LI+TT+LLWVLFF N FSYYG +LLTS+LSS +SKC 
Sbjct: 262 MDREKISTLKSGFSSFSLLFSSNLIQTTLLLWVLFFGNVFSYYGIILLTSQLSSSESKCS 321

Query: 64  SKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLV 123
             +LH+   +D SL++DV ITSFAELPG++LSA++VD+ GRKLSM +MF+ A IFLLPLV
Sbjct: 322 LTILHSQNPQDESLFMDVLITSFAELPGILLSAMMVDRFGRKLSMAIMFIFAWIFLLPLV 381

Query: 124 FHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLV 183
             QS ++TT LLFG RM + GT TVA+IYAPE+YPTS R+TGAG ASAVGR+GGMVCPLV
Sbjct: 382 SRQSDILTTGLLFGARMFSLGTFTVASIYAPELYPTSIRSTGAGTASAVGRIGGMVCPLV 441

Query: 184 AVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAIES 232
           AV LV++CH + A+ILFEVV  + +   LLFPFET GREL D + A ES
Sbjct: 442 AVALVSNCHFKAAIILFEVVIAITVVCILLFPFETSGRELSDRLAAPES 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/206 (61%), Positives = 156/206 (75%)

Query: 26  KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITS 85
           +LI+TT+LLWVL+F N+F YYG +LLTS+LS    +C S     +  +D +LY+D+FITS
Sbjct: 285 RLIKTTLLLWVLYFGNSFLYYGIILLTSELSGRQDECRSATSSLENHQDENLYIDIFITS 344

Query: 86  FAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGT 145
            AELPG+ILSAI VD+ GRK SM+ MFV ACIFLLPLV HQSAV+ T  LFG RMCA GT
Sbjct: 345 LAELPGIILSAITVDRFGRKRSMIFMFVAACIFLLPLVSHQSAVLRTSFLFGARMCAIGT 404

Query: 146 ITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFV 205
            T+A IY PE+YPT  RTTG+GVASA GR+GGM+CPLVAVGLVT CH+   +I+FEVV  
Sbjct: 405 FTIACIYCPELYPTPVRTTGSGVASAAGRIGGMICPLVAVGLVTGCHVEAGIIVFEVVAA 464

Query: 206 LAIASSLLFPFETKGRELKDAVDAIE 231
           ++    L FP+ETKG EL D+V   +
Sbjct: 465 ISAICLLFFPYETKGCELSDSVGPFD 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum]

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 131/200 (65%), Positives = 156/200 (78%)

Query: 26  KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITS 85
           KLIRTT+LLWVLFF ++FSYYG +LLTSKLSSG S C   +      +D+ LY++ FITS
Sbjct: 281 KLIRTTLLLWVLFFGDSFSYYGIILLTSKLSSGQSTCFPSLQSNINPQDDGLYLNAFITS 340

Query: 86  FAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGT 145
            AELPGL+LSAI+VD++GRK SM +MF LA IFL PL+  Q AV+TT LLFG RM A GT
Sbjct: 341 MAELPGLLLSAILVDRVGRKHSMAIMFGLAFIFLTPLLIQQPAVLTTCLLFGARMNAMGT 400

Query: 146 ITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFV 205
            TVA+IY+PE+YPTS RTTGAGVASA+GR+GGMVCPLVAVGLV  CH   AV LF V  V
Sbjct: 401 FTVASIYSPELYPTSVRTTGAGVASAIGRIGGMVCPLVAVGLVNECHQTAAVALFLVAIV 460

Query: 206 LAIASSLLFPFETKGRELKD 225
           ++I    LFP++TKGREL D
Sbjct: 461 VSIVCIQLFPYDTKGRELSD 480

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095094|ref|XP_002310344.1| predicted protein [Populus trichocarpa] gi|222853247|gb|EEE90794.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 160/215 (74%), Gaps = 1/215 (0%)

Query: 18  SFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSL 77
           S   L S KL R+TVLLWV+FF NAFSYYG VLLT++L++ ++ C      +DKS     
Sbjct: 261 SLLLLISPKLARSTVLLWVVFFGNAFSYYGLVLLTTELNNRNNTCNHTKAQSDKSSAVD- 319

Query: 78  YVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFG 137
           Y +VFITSFAE PGLI+SA+IVD+IGRKLSM  +F +ACIFLLPLV HQS  +TT+LLFG
Sbjct: 320 YKEVFITSFAEFPGLIVSALIVDRIGRKLSMAALFFVACIFLLPLVVHQSPRITTILLFG 379

Query: 138 VRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAV 197
            R+C TGT T+  IYAPEIYPTS R+TG GVASA+GR+GGM+CPLVAV LV  CH   A+
Sbjct: 380 ARICITGTFTIVFIYAPEIYPTSVRSTGMGVASAMGRIGGMICPLVAVSLVQGCHQTAAL 439

Query: 198 ILFEVVFVLAIASSLLFPFETKGRELKDAVDAIES 232
           +LF  V  +A    +LFP ETKG EL ++V + ++
Sbjct: 440 VLFVCVMFVAGCCVMLFPHETKGLELTESVSSTKN 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122710|ref|XP_002330449.1| predicted protein [Populus trichocarpa] gi|222871861|gb|EEF08992.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 126/215 (58%), Positives = 159/215 (73%), Gaps = 1/215 (0%)

Query: 18  SFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSL 77
           S   L S KLIR+TVLLWV+FF NAFSYYG VLLT++L++  + C      +  S D   
Sbjct: 276 SLLMLLSPKLIRSTVLLWVVFFGNAFSYYGLVLLTTELNNRSNTCHHTKAQSQGSSDVD- 334

Query: 78  YVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFG 137
           Y +V I SFAE PGLI+SA+IVD+IGRKLS+ ++F ++CIFLLPLV HQS  VTTVLLFG
Sbjct: 335 YKEVLIASFAEFPGLIVSALIVDRIGRKLSLAVLFFVSCIFLLPLVVHQSPSVTTVLLFG 394

Query: 138 VRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAV 197
            R+C TGT T+  IYAPEIYPTS R+TG GVAS++GR+GGM+CPLVAV LV  CH   A+
Sbjct: 395 ARICITGTFTIVFIYAPEIYPTSVRSTGIGVASSMGRIGGMICPLVAVSLVQGCHQTAAL 454

Query: 198 ILFEVVFVLAIASSLLFPFETKGRELKDAVDAIES 232
           ILF  +  +A    +LFPFETKG EL D++ + ++
Sbjct: 455 ILFVCIIFVAGCCVMLFPFETKGLELTDSISSTKN 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357120730|ref|XP_003562078.1| PREDICTED: synaptic vesicle 2-related protein-like [Brachypodium distachyon]

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 118/213 (55%), Positives = 159/213 (74%), Gaps = 1/213 (0%)

Query: 13  KSG-FSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADK 71
           KSG  ++  +L SRKL R+T+LLW +F+AN+F+YYG VLLTS+LS  +  C S + H   
Sbjct: 295 KSGSVAALRSLLSRKLRRSTLLLWFVFYANSFAYYGLVLLTSQLSDANRSCASGMRHVKS 354

Query: 72  SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVT 131
             D +LY D FITSFAE+PGLI+SA++V+ +GRK +M  +  + C FL PLV HQ+ ++T
Sbjct: 355 ENDANLYKDTFITSFAEVPGLIVSAVLVEWVGRKATMWCLMFICCCFLGPLVLHQNELLT 414

Query: 132 TVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC 191
           TV LFG R CA G+ TV  +YAPE+YPTS R+TG G+A+A+GR+GG+VCPLVAVG++ SC
Sbjct: 415 TVFLFGARACAMGSFTVLCLYAPEVYPTSVRSTGVGIATAIGRIGGIVCPLVAVGMLRSC 474

Query: 192 HLRLAVILFEVVFVLAIASSLLFPFETKGRELK 224
           H   A+I+FEVV  LA  + +LFP ETKGRE+ 
Sbjct: 475 HQVEAIIVFEVVLCLAAVACMLFPVETKGREMN 507

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.935	0.434	0.495	1.7e-50
ZFIN|ZDB-GENE-070705-359	411	svopb "SV2 related protein hom	0.887	0.501	0.328	9.7e-25
WB|WBGene00014021	520	svop-1 [Caenorhabditis elegans	0.952	0.425	0.307	1.1e-24
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.875	0.370	0.344	2.2e-24
RGD|620277	548	Svop "SV2 related protein" [Ra	0.875	0.370	0.334	7.9e-24
UNIPROTKB|F1LPX1	548	Svop "Synaptic vesicle 2-relat	0.875	0.370	0.334	7.9e-24
UNIPROTKB|Q9Z2I7	548	Svop "Synaptic vesicle 2-relat	0.875	0.370	0.334	7.9e-24
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.875	0.420	0.334	8.1e-24
UNIPROTKB|E2QZ16	548	SVOP "Uncharacterized protein"	0.875	0.370	0.334	1.3e-23
MGI|MGI:1915916	548	Svop "SV2 related protein" [Mu	0.875	0.370	0.330	1.7e-23

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 109/220 (49%), Positives = 141/220 (64%)

Query:    10 DKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHA 69
             DK + GFS    L S  L++ T+LLWV+FF NAF+YYG VLLT++L++  ++C       
Sbjct:   275 DK-EPGFS-LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQL 332

Query:    70 DKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAV 129
               S D + Y DVFI SFAE PGL++SA +VD++GRK SM  M    CIFLLPL+ HQS  
Sbjct:   333 RNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPF 391

Query:   130 VTTVLLFGVRMCATGTITVATIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVAVGLVT 189
             +TTVLLFG R+C +   TV  IYAPEIYP                   ++CPLVAVGLV 
Sbjct:   392 ITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVH 451

Query:   190 SCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDA 229
              CH  +AV+LFEVV +++     LFPFET GR+L D++ A
Sbjct:   452 GCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISA 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

ZFIN|ZDB-GENE-070705-359 svopb "SV2 related protein homolog b (rat)" [Danio rerio (taxid:7955)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 71/216 (32%), Positives = 112/216 (51%)

Query:    22 LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKC---GSKVLHADKSKDNSL- 77
             LF  +  RTT+L+W ++F +AF YYG VLLT++L    S C    S + H        L 
Sbjct:   193 LFIPEYRRTTLLVWCIWFFSAFLYYGLVLLTTELFQAGSACVTENSNIEHQCSLMCQHLT 252

Query:    78 ---YVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVL 134
                Y+D+  T+FAE PGL+++  +V++I R+ SMV+ F L  + +LPL      +V TV 
Sbjct:   253 IDDYLDLLWTTFAEFPGLLVALWMVNRISRRKSMVICFSLFTVCILPLYACTHRIVLTVF 312

Query:   135 LFGVRMCATGTITVATIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVA-VGLVTSCHL 193
             +F  R        +A +Y PE++P                   +V P +A V L +S +L
Sbjct:   313 IFIARTSINAGWQIAYVYTPEVFPTATRAIGIGTSSGMSRVGALVTPFIAQVLLKSSVYL 372

Query:   194 RLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDA 229
              L+V L  +  +L  A+    P ET+GR L+++  +
Sbjct:   373 TLSVYL--IFGLLGTAACWALPMETEGRSLQESTQS 406

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 287 (106.1 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 71/231 (30%), Positives = 110/231 (47%)

Query:     5 TRKITDKLKSGFSS---FFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSK 61
             T ++    K+G  S      L S  L +TT+LLW ++   AFSYYG VL T+ L     +
Sbjct:   290 TGRLVSSTKAGSESRGDIANLLSPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDE 349

Query:    62 C-GSKVLHADKSK-----DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLA 115
             C G    +  + +       S Y D+  T+ AE PGLI++ +I++  GRK +M L + + 
Sbjct:   350 CHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVF 409

Query:   116 CIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPXXXXXXXXXXXXXXXXX 175
              IF   L F       TVL+F  R   +G    A +Y PE+YP                 
Sbjct:   410 AIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARI 469

Query:   176 XXMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
               +V P +A  + +   L L + ++    +L + +SL  P ETKGR++ D+
Sbjct:   470 GAIVTPFIAQ-VASEKSLSLPIGIYGTAAILGLIASLSLPIETKGRQMMDS 519

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 2.2e-24, P = 2.2e-24
 Identities = 74/215 (34%), Positives = 110/215 (51%)

Query:    22 LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG----SKVLHADKSK---- 73
             LF+     TT+LLW ++F+NAFSYYG VLLT++L      CG     K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query:    74 -DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTT 132
                  Y+D+  T+ +E PG++++  I+D++GRK +M L FV+     L L       V T
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLT 427

Query:   133 VLLFGVRMCATGTITVATIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVA-VGLVTSC 191
             +LLF  R   +G    A +Y PE+YP                   ++ P +A V L +S 
Sbjct:   428 LLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSV 487

Query:   192 HLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
             +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct:   488 YLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)]

 Score = 280 (103.6 bits), Expect = 7.9e-24, P = 7.9e-24
 Identities = 72/215 (33%), Positives = 110/215 (51%)

Query:    22 LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG----SKVLHADKSK---- 73
             LF+     TT+LLW ++F+NAFSYYG VLLT++L      C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:    74 -DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTT 132
                  Y+D+  T+ +E PG++++  ++D++GRK +M L FV+  +  L L       V T
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLT 427

Query:   133 VLLFGVRMCATGTITVATIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVA-VGLVTSC 191
             +LLF  R   +G    A +Y PE+YP                   ++ P +A V L +S 
Sbjct:   428 LLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSV 487

Query:   192 HLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
             +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct:   488 YLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|F1LPX1 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 280 (103.6 bits), Expect = 7.9e-24, P = 7.9e-24
 Identities = 72/215 (33%), Positives = 110/215 (51%)

Query:    22 LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG----SKVLHADKSK---- 73
             LF+     TT+LLW ++F+NAFSYYG VLLT++L      C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:    74 -DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTT 132
                  Y+D+  T+ +E PG++++  ++D++GRK +M L FV+  +  L L       V T
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLT 427

Query:   133 VLLFGVRMCATGTITVATIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVA-VGLVTSC 191
             +LLF  R   +G    A +Y PE+YP                   ++ P +A V L +S 
Sbjct:   428 LLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSV 487

Query:   192 HLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
             +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct:   488 YLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9Z2I7 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 280 (103.6 bits), Expect = 7.9e-24, P = 7.9e-24
 Identities = 72/215 (33%), Positives = 110/215 (51%)

Query:    22 LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG----SKVLHADKSK---- 73
             LF+     TT+LLW ++F+NAFSYYG VLLT++L      C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:    74 -DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTT 132
                  Y+D+  T+ +E PG++++  ++D++GRK +M L FV+  +  L L       V T
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLT 427

Query:   133 VLLFGVRMCATGTITVATIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVA-VGLVTSC 191
             +LLF  R   +G    A +Y PE+YP                   ++ P +A V L +S 
Sbjct:   428 LLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSV 487

Query:   192 HLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
             +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct:   488 YLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 278 (102.9 bits), Expect = 8.1e-24, P = 8.1e-24
 Identities = 72/215 (33%), Positives = 110/215 (51%)

Query:    22 LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG----SKVLHADKSK---- 73
             LF+     TT+LLW ++F+NAFSYYG VLLT++L      C      K + A  S     
Sbjct:   243 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 302

Query:    74 -DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTT 132
                  Y+D+  T+ +E PG++++  I+D++GRK +M L FV+  +  L L       + T
Sbjct:   303 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRNMLT 362

Query:   133 VLLFGVRMCATGTITVATIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVA-VGLVTSC 191
             +LLF  R   +G    A +Y PE+YP                   ++ P +A V L +S 
Sbjct:   363 LLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSV 422

Query:   192 HLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
             +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct:   423 YLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 455

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 278 (102.9 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 72/215 (33%), Positives = 110/215 (51%)

Query:    22 LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG----SKVLHADKSK---- 73
             LF+     TT+LLW ++F+NAFSYYG VLLT++L      C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 367

Query:    74 -DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTT 132
                  Y+D+  T+ +E PG++++  I+D++GRK +M L FV+  +  L L       + T
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRNMLT 427

Query:   133 VLLFGVRMCATGTITVATIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVA-VGLVTSC 191
             +LLF  R   +G    A +Y PE+YP                   ++ P +A V L +S 
Sbjct:   428 LLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSV 487

Query:   192 HLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
             +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct:   488 YLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

MGI|MGI:1915916 Svop "SV2 related protein" [Mus musculus (taxid:10090)]

 Score = 277 (102.6 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 71/215 (33%), Positives = 110/215 (51%)

Query:    22 LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG----SKVLHADKSK---- 73
             LF+     TT+LLW ++F+NAFSYYG VLLT++L      C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:    74 -DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTT 132
                  Y+D+  T+ +E PG++++  ++D++GRK +M L F++  +  L L       V T
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLT 427

Query:   133 VLLFGVRMCATGTITVATIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVA-VGLVTSC 191
             +LLF  R   +G    A +Y PE+YP                   ++ P +A V L +S 
Sbjct:   428 LLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSV 487

Query:   192 HLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA 226
             +L LAV  +    +LA  +S   P ETKGR L+++
Sbjct:   488 YLTLAV--YSGCCLLAGVASCFLPIETKGRALQES 520

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-32
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-16
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-10
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	6e-10
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	3e-08
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	6e-07
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	8e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-06
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	2e-05
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	3e-05
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-05
PRK10406	432	PRK10406, PRK10406, alpha-ketoglutarate transporte	1e-04
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	7e-04
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	0.001

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  121 bits (305), Expect = 6e-32
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 23/206 (11%)

Query: 22  LFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDV 81
             +  L +TT+ L +L+F  AFSYYG VL    L                    ++Y+D+
Sbjct: 320 FRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG------------------NIYLDL 361

Query: 82  FITSFAELPGLILSAIIVDKIGRKLSMVLMFVLA--CIFLLPLVFHQSAVVTTVLLFGVR 139
           FI+   ELP  +++ +++D++GR+ +M    +LA   + LL  V      + T L    +
Sbjct: 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGK 421

Query: 140 MCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVIL 199
              T    +  +Y  E+YPT  R  G GV S + RVG ++ P +    +    L L ++L
Sbjct: 422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV--YLGEKWLFLPLVL 479

Query: 200 FEVVFVLAIASSLLFPFETKGRELKD 225
           F  + +LA   +L  P ETKG  L +
Sbjct: 480 FGGLALLAGILTLFLP-ETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 76.2 bits (188), Expect = 3e-16
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 15/170 (8%)

Query: 17  SSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNS 76
           S F  LF  K  R TVLLW+L+F      Y       KL        S            
Sbjct: 238 SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATG------- 290

Query: 77  LYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLF 136
                 + +F  + G I+   + D++G +++ +L  +L  +F   LV       T +LL 
Sbjct: 291 ----GALFNFGGVIGSIIFGWLADRLGPRVTALL-LLLGAVFA-VLVGSTLFSPTLLLLL 344

Query: 137 GV--RMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA 184
           G        G  +         YPT+ R TG G A  +GR+G ++ P++A
Sbjct: 345 GAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 11/203 (5%)

Query: 14  SGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSK 73
           +       L    L+R  +LL + FF  +F YYG +              +         
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA------ 213

Query: 74  DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS-MVLMFVLACIFLLPLVFHQSAVVTT 132
                + + +     + G +L  ++ D++GR+   +++  +LA + LL L    S  +  
Sbjct: 214 ----GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269

Query: 133 VLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH 192
           V L  +              A E+ P  AR T +G+ +  G +GG + PL+A  L+ +  
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329

Query: 193 LRLAVILFEVVFVLAIASSLLFP 215
                ++   + +LA    LL P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 58.4 bits (141), Expect = 6e-10
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 77  LYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACI--FLLPLVFHQSAVVTTVL 134
           +Y   F+ + A LPG I+SA+++DKIGR   +    VL+CI  F L     +SA++  + 
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLC 656

Query: 135 LF-GVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHL 193
           LF G+ + A   + V T+   E+YP+  R T  G  +A+ +   ++  L+    V     
Sbjct: 657 LFGGLSIAAWNALDVLTV---ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV-GITK 712

Query: 194 RLAVILFEVVFVLAIASSLLFPFETKGRELK 224
              ++            +L  P +T+G+ L 
Sbjct: 713 AAPILFASAALACGGLLALKLP-DTRGQVLM 742

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 29/94 (30%), Positives = 44/94 (46%)

Query: 91  GLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVAT 150
           G +L   ++D++  +  ++L++      L  L    S     +  F   +   G  +V  
Sbjct: 271 GSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330

Query: 151 IYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA 184
             AP  YPT  R TG G A AVGR+G M  PL+A
Sbjct: 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364

Length = 406

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 94  LSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCA----TGTITVA 149
           LS  + D+IGR+  +++  VLA +  +PL+       +  L F + +             
Sbjct: 274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM 333

Query: 150 TIYAPEIYPTSARTTGAGVASAVGRV-GGMVCPLVAVGLVTS 190
             + PE++PT  R TGA +A  +     G   P +A  LV  
Sbjct: 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 29/236 (12%)

Query: 12  LKSGFSSFFTLFSR----KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSS--GDSKCGSK 65
            K+ +S FFT F +    K +  T   W   F    ++YG  L    + S  G S   + 
Sbjct: 270 PKASWSDFFTHFFKWRHGKHLLGTAGSW---FLLDIAFYGVNLNQKVILSAIGYSPPAAT 326

Query: 66  VLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF- 124
               ++    ++  ++ I     +PG  ++  +VD IGRK   ++ F +  +    L F 
Sbjct: 327 NNAYEELYKTAV-GNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA 385

Query: 125 -----HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMV 179
                    +   VL            T   I   E++PT  R+T  G+++A G+ G ++
Sbjct: 386 YNHLSTHGFLAIYVLAQFFANFGPNATTF--IVPGEVFPTRYRSTAHGISAASGKAGAII 443

Query: 180 CPL----------VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKD 225
                           G  T   +   + +F +   L I  +LL P ETKG+ L++
Sbjct: 444 GQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIP-ETKGKSLEE 498

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 28/139 (20%), Positives = 54/139 (38%)

Query: 81  VFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRM 140
           +   S        L+  + D+ GR+  +++  +L  + LL L+F  S  +  VL     +
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 141 CATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILF 200
                   A     + +P   R    G+ SA   +G  + PL+   L +    R A ++ 
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157

Query: 201 EVVFVLAIASSLLFPFETK 219
            ++ +LA   + L      
Sbjct: 158 AILALLAAVLAALLLPRPP 176

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 30/135 (22%), Positives = 53/135 (39%)

Query: 81  VFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRM 140
           V   S     G +L+  + D+ GR+  ++L  +L  +  L L F  S  +  V  F + +
Sbjct: 40  VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGL 99

Query: 141 CATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILF 200
                   A     E +P   R    G+ SA   +G ++ PL+   L  S   R   ++ 
Sbjct: 100 GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159

Query: 201 EVVFVLAIASSLLFP 215
            ++ +L     L   
Sbjct: 160 AILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 16/210 (7%)

Query: 15  GFSSFFTLFSRKLIRTTVLLWV-LFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSK 73
            F SF    S K   T V+L V + FA  +S+    LL + L +         L  D   
Sbjct: 261 IFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD--------LGYDPHT 312

Query: 74  DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQ--SAVVT 131
             ++   +F + F    G  +   + D +G + + V   +++ + ++P+      +  V 
Sbjct: 313 VANV---LFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVL 369

Query: 132 TVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC 191
            +LLF  +M   G   +        + T  R  G G    VG +GG + P+  +G + + 
Sbjct: 370 GLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPI--LGALIAQ 427

Query: 192 HLRLAVILFEVVFVLAIASSLLFPFETKGR 221
            L L   L  + F L     LL   +   R
Sbjct: 428 RLDLGTALASLSFSLTFVVILLIGLDMPSR 457

Length = 496

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 4/141 (2%)

Query: 83  ITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF--HQSAVVTTVLLFGVRM 140
             +F  + G I+  +  D+IG K +  +  +++ +F+ PL      + ++    LFG+  
Sbjct: 274 AAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMA 333

Query: 141 CATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILF 200
              G   +   +  + +P   R  G G+   +    G    + A  L     + L   L 
Sbjct: 334 TNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL--GITMGLGAALT 391

Query: 201 EVVFVLAIASSLLFPFETKGR 221
            +V        L+       R
Sbjct: 392 FIVAFWTATILLIIGLSIPDR 412

Length = 426

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 93  ILSAIIVDKIGRK--------LSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMC-AT 143
            ++  +VD+ GR+           +   VL    L       + +V  V +       A 
Sbjct: 304 FIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFAL 363

Query: 144 GTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVV 203
           G   V  +   E++P   R     +A+A   +   +   +   +  +    +  ++F  +
Sbjct: 364 GWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVF-LVFAGL 422

Query: 204 FVLAIASSLLFPFETKGREL 223
            VL I     F  ETKGR L
Sbjct: 423 LVLFILFVFFFVPETKGRTL 442

Length = 449

>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 100 DKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVAT----IYAPE 155
           DKIGR+ SM+    LA +F +P++     V +    FG+ MCA   ++  T    I   E
Sbjct: 304 DKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAE 363

Query: 156 IYPTSARTTGAGVASAV 172
           ++P   R  G G++ AV
Sbjct: 364 MFPAQVRALGVGLSYAV 380

Length = 432

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 50/240 (20%), Positives = 82/240 (34%), Gaps = 31/240 (12%)

Query: 1   MISMTRKITDKLKSG--FSSFFTLFSRKLIRTTVLLWVLFFA--NAFSYYGAVLLTSKLS 56
            I  + +      S     S      R+L    VL W   F   NA  YY   +  +   
Sbjct: 257 DIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV 316

Query: 57  SGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL--------SM 108
           S D      ++         +    F  +F       ++  +VD+ GR+           
Sbjct: 317 STDHAFLVSII---------VGAVNFAFTF-------VAIFLVDRFGRRPLLLIGAAGMA 360

Query: 109 VLMFVLA---CIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTG 165
           + +FVL      F+         V    +L  +   A G   V  +   EI+P S R  G
Sbjct: 361 ICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420

Query: 166 AGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKD 225
             +A A   +   +   +   ++ S  +    I F  + VL +     F  ETKGR L++
Sbjct: 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 81  VFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPL-VFHQSAVVTTVLLFGVR 139
           V  ++   + G  +   + D +GR+ + V   +   + ++P+     +  V  + LF  +
Sbjct: 280 VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339

Query: 140 MCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLV 183
           M   G   +   +  E +PT  R  G G    +G +GG + P++
Sbjct: 340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII 383

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.9
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.9
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.9
KOG0569	485	consensus Permease of the major facilitator superf	99.89
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.89
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.88
PRK03545	390	putative arabinose transporter; Provisional	99.88
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.88
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.88
PRK11663	434	regulatory protein UhpC; Provisional	99.87
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.87
TIGR00891	405	2A0112 putative sialic acid transporter.	99.87
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.87
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.86
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.86
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.86
PRK10091	382	MFS transport protein AraJ; Provisional	99.86
PRK10504	471	putative transporter; Provisional	99.86
PRK10642	490	proline/glycine betaine transporter; Provisional	99.86
PRK10054	395	putative transporter; Provisional	99.86
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.86
PRK03893	496	putative sialic acid transporter; Provisional	99.85
TIGR00895	398	2A0115 benzoate transport.	99.85
PRK12307	426	putative sialic acid transporter; Provisional	99.85
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.85
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.85
TIGR00893	399	2A0114 d-galactonate transporter.	99.85
PLN00028	476	nitrate transmembrane transporter; Provisional	99.85
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.85
PRK03699	394	putative transporter; Provisional	99.84
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.84
TIGR00900	365	2A0121 H+ Antiporter protein.	99.84
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.83
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.83
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.83
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.83
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.83
PRK10489	417	enterobactin exporter EntS; Provisional	99.83
PRK09874	408	drug efflux system protein MdtG; Provisional	99.82
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.82
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.82
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.82
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.82
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.82
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.82
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.82
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.82
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.82
TIGR00898	505	2A0119 cation transport protein.	99.82
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.82
PRK11043	401	putative transporter; Provisional	99.81
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.81
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.81
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.81
PRK10642	490	proline/glycine betaine transporter; Provisional	99.8
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.8
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.8
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.8
PRK05122	399	major facilitator superfamily transporter; Provisi	99.8
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.79
PRK12382	392	putative transporter; Provisional	99.79
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.79
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.79
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.79
PRK03633	381	putative MFS family transporter protein; Provision	99.79
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.79
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.78
PRK12307	426	putative sialic acid transporter; Provisional	99.78
PRK09705	393	cynX putative cyanate transporter; Provisional	99.78
PRK15075	434	citrate-proton symporter; Provisional	99.78
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.77
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.77
PRK10489	417	enterobactin exporter EntS; Provisional	99.77
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.77
PRK09705	393	cynX putative cyanate transporter; Provisional	99.77
PRK09952	438	shikimate transporter; Provisional	99.77
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.77
PRK11663	434	regulatory protein UhpC; Provisional	99.77
PRK09952	438	shikimate transporter; Provisional	99.76
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.76
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.76
PRK15075	434	citrate-proton symporter; Provisional	99.76
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.75
PRK10133	438	L-fucose transporter; Provisional	99.75
PRK05122	399	major facilitator superfamily transporter; Provisi	99.75
PRK15011	393	sugar efflux transporter B; Provisional	99.75
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.75
PRK09528	420	lacY galactoside permease; Reviewed	99.75
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.74
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.74
PRK03699	394	putative transporter; Provisional	99.74
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.74
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.74
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.73
PRK03545	390	putative arabinose transporter; Provisional	99.73
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.73
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.72
PTZ00207	591	hypothetical protein; Provisional	99.72
TIGR00898	505	2A0119 cation transport protein.	99.72
TIGR00893	399	2A0114 d-galactonate transporter.	99.72
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.71
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.71
KOG2615	451	consensus Permease of the major facilitator superf	99.7
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.7
PRK11010	491	ampG muropeptide transporter; Validated	99.7
PRK09874	408	drug efflux system protein MdtG; Provisional	99.7
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.7
PRK12382	392	putative transporter; Provisional	99.7
KOG2532	466	consensus Permease of the major facilitator superf	99.69
PRK15011	393	sugar efflux transporter B; Provisional	99.69
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.69
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.69
KOG0254	513	consensus Predicted transporter (major facilitator	99.69
PRK03633	381	putative MFS family transporter protein; Provision	99.69
PRK03893	496	putative sialic acid transporter; Provisional	99.69
PRK11902	402	ampG muropeptide transporter; Reviewed	99.68
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.68
TIGR00895	398	2A0115 benzoate transport.	99.68
TIGR00805	633	oat sodium-independent organic anion transporter.	99.68
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.67
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.67
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.67
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.67
TIGR00901	356	2A0125 AmpG-related permease.	99.67
PRK09528	420	lacY galactoside permease; Reviewed	99.67
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.67
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.66
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.66
KOG0254	513	consensus Predicted transporter (major facilitator	99.66
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.66
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.66
TIGR00891	405	2A0112 putative sialic acid transporter.	99.65
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.65
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.65
PLN00028	476	nitrate transmembrane transporter; Provisional	99.64
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.64
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.64
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.64
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.64
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.64
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.64
TIGR00900	365	2A0121 H+ Antiporter protein.	99.64
PRK11010	491	ampG muropeptide transporter; Validated	99.63
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.63
PRK10504	471	putative transporter; Provisional	99.63
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.62
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.62
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.62
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.61
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.61
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.6
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.6
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.59
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.59
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.59
KOG0569	485	consensus Permease of the major facilitator superf	99.57
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.57
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.56
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.55
KOG2533	495	consensus Permease of the major facilitator superf	99.55
PRK10054	395	putative transporter; Provisional	99.54
TIGR00901	356	2A0125 AmpG-related permease.	99.54
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.53
PRK11902	402	ampG muropeptide transporter; Reviewed	99.53
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.53
PRK11043	401	putative transporter; Provisional	99.53
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.53
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.52
PRK09848	448	glucuronide transporter; Provisional	99.52
PRK10091	382	MFS transport protein AraJ; Provisional	99.51
PRK09669	444	putative symporter YagG; Provisional	99.51
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.51
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.5
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.5
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.5
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.5
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.49
PRK10133	438	L-fucose transporter; Provisional	99.49
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.49
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.48
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.48
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.48
PF13347	428	MFS_2: MFS/sugar transport protein	99.48
PRK10429	473	melibiose:sodium symporter; Provisional	99.48
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.47
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.46
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.46
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.46
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.44
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.42
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.42
KOG2532	466	consensus Permease of the major facilitator superf	99.42
PRK11462	460	putative transporter; Provisional	99.41
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.4
PRK09669	444	putative symporter YagG; Provisional	99.38
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.38
COG2211	467	MelB Na+/melibiose symporter and related transport	99.36
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.34
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.34
PRK10429	473	melibiose:sodium symporter; Provisional	99.34
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.33
KOG2533	495	consensus Permease of the major facilitator superf	99.29
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.28
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.28
PRK11462	460	putative transporter; Provisional	99.28
KOG3762	618	consensus Predicted transporter [General function	99.24
PF13347	428	MFS_2: MFS/sugar transport protein	99.23
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.22
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.21
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.19
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.19
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.15
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.15
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.15
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.14
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.12
COG2211	467	MelB Na+/melibiose symporter and related transport	99.05
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.04
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.03
PRK09848	448	glucuronide transporter; Provisional	99.01
KOG2563	480	consensus Permease of the major facilitator superf	98.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.89
KOG2563	480	consensus Permease of the major facilitator superf	98.87
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.76
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.73
COG0477	338	ProP Permeases of the major facilitator superfamil	98.7
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.7
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.64
PF12832	77	MFS_1_like: MFS_1 like family	98.64
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.63
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.56
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.52
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.47
PTZ00207	591	hypothetical protein; Provisional	98.44
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.44
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.3
TIGR00805	633	oat sodium-independent organic anion transporter.	98.26
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.24
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.17
KOG2615	451	consensus Permease of the major facilitator superf	98.13
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.09
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.07
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.05
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.03
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.02
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.99
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.96
KOG0637	498	consensus Sucrose transporter and related proteins	97.87
KOG3626	735	consensus Organic anion transporter [Secondary met	97.87
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.87
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.85
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.83
PRK03612	521	spermidine synthase; Provisional	97.79
KOG3626	735	consensus Organic anion transporter [Secondary met	97.72
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.72
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.56
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.53
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.37
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.36
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.36
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.32
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.24
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.88
COG3202	509	ATP/ADP translocase [Energy production and convers	96.85
KOG3762	618	consensus Predicted transporter [General function	96.71
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.67
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.42
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.39
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.15
KOG3097	390	consensus Predicted membrane protein [Function unk	95.7
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.6
KOG0637	498	consensus Sucrose transporter and related proteins	95.27
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	94.62
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.85
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.73
KOG3880	409	consensus Predicted small molecule transporter inv	93.39
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	93.27
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	93.18
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	92.89
KOG3810	433	consensus Micronutrient transporters (folate trans	92.73
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.35
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.81
KOG3810	433	consensus Micronutrient transporters (folate trans	88.3
PRK10263	1355	DNA translocase FtsK; Provisional	87.62
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	82.26
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	82.07
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	80.69
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	80.45

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.90  E-value=3.2e-22  Score=167.48  Aligned_cols=145  Identities=25%  Similarity=0.342  Sum_probs=121.6

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 026854           77 LYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEI  156 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~  156 (232)
                      ......+..++.+++.++.|+++||+|||++++++.++.+++.+++.+.++...+++..++.+++.++.++..+++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677899999999999999999999999999999999888888776666666667777877778888999999999


Q ss_pred             cccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCCc
Q 026854          157 YPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGREL  223 (232)
Q Consensus       157 ~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  223 (232)
                      +|++.|++++|+.+..+++|++++|.+++.+.+. +...++++.+++.++++++.++ +|||+++.+
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~~~~l  741 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTRGQVL  741 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCccccc
Confidence            9999999999999999999999999999988775 4556777777777776666554 499987653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=2.6e-22  Score=150.86  Aligned_cols=208  Identities=40%  Similarity=0.695  Sum_probs=173.1

Q ss_pred             ccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC------ccccc---cCCCCchhhHHHHHHH
Q 026854           14 SGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG------SKVLH---ADKSKDNSLYVDVFIT   84 (232)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~   84 (232)
                      +.+.+..+++.++.+|..+.++..++.+.+.+|+.......+.+....|.      +...+   +-..+...-..-..+.
T Consensus       311 e~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllit  390 (528)
T KOG0253|consen  311 EVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLIT  390 (528)
T ss_pred             ccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHH
Confidence            34556778888899999999999999999999999988887776554333      11111   1123334445667778


Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhh
Q 026854           85 SFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTT  164 (232)
Q Consensus        85 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~  164 (232)
                      .+..++|.++.+++.||+|||+.+....++++++.++.....+.....+..+...++..+.+.+.|+|.+|++|+..|++
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            89999999999999999999999999999999999999998777777788888888888999999999999999999999


Q ss_pred             hhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCCc
Q 026854          165 GAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGREL  223 (232)
Q Consensus       165 ~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  223 (232)
                      +.|.+....++|+++.|+++  +........+..++..+++++++...++.-|||+|..
T Consensus       471 gvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            99999999999999999998  4444456678888999999999999999889998864

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.90  E-value=8e-22  Score=157.42  Aligned_cols=184  Identities=13%  Similarity=0.063  Sum_probs=160.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH
Q 026854           26 KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRK  105 (232)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  105 (232)
                      ..++.+..+++.+++............|.+.++++           .+..+.++..+...++..++.++.|++.||+|||
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~-----------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r   73 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLG-----------LSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR   73 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcC-----------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH
Confidence            34566667777777777878888888887777766           8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          106 LSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      +++..+.++..++.....+.++.+.+++.+++.|++.+...+....+++|++|+++|+++.++.+....+|..+++.+.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~  153 (412)
T TIGR02332        74 RWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG  153 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888899999999999999999988888899999999999999999999999999999999999


Q ss_pred             HHhh------ccchhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          186 GLVT------SCHLRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       186 ~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      ++.+      ..||+..|.+.++..++..++.+++.||+++
T Consensus       154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       154 YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            8874      3589999999888877766666677788764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.3e-21  Score=153.72  Aligned_cols=205  Identities=19%  Similarity=0.254  Sum_probs=162.8

Q ss_pred             cccchhhhcch-hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHH
Q 026854           15 GFSSFFTLFSR-KLIRTTVLLWVLFFANA-FSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGL   92 (232)
Q Consensus        15 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (232)
                      ++.++++++++ ..++.....+...++.. .+.+....|...+.++.|           .+..++.+.....++...+.+
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG-----------~~~~~a~~an~~~g~v~~~~t  322 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG-----------FTPEEAQYANLGIGIVNLLST  322 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHH
Confidence            45567888874 45555555555555444 355666777787887776           889999999999999999999


Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh----hh--HHHH---HHHHHHHH-HHHhhhhhhhhhccccccccchh
Q 026854           93 ILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH----QS--AVVT---TVLLFGVR-MCATGTITVATIYAPEIYPTSAR  162 (232)
Q Consensus        93 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----~~--~~~~---~~~~~~~g-~~~~~~~~~~~~~~~e~~p~~~r  162 (232)
                      +++.++.||+|||++++.+..++.+..+.+...    ..  .|.-   .+..++.. .+.-+..|+.+-+.+|++|++.|
T Consensus       323 ~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R  402 (485)
T KOG0569|consen  323 LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR  402 (485)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence            999999999999999999999999888777651    11  1221   22222222 23445679999999999999999


Q ss_pred             hhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCCchhhHHhhh
Q 026854          163 TTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAIE  231 (232)
Q Consensus       163 ~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  231 (232)
                      +.+.++.....++..++....++.+.+..|. ..|..+.+.+.+..+..++.+||||+|+.+|..++.+
T Consensus       403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence            9999999999999999999999999999887 6888889999999999999999999999888766644

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=4.6e-21  Score=147.91  Aligned_cols=181  Identities=12%  Similarity=0.042  Sum_probs=171.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR  104 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  104 (232)
                      +..+...+.+.+..|+....-+.....+|.+.+|++           .+...+++..+.+.++..+++++...+.||+.|
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~-----------vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~R   77 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLG-----------VSEGAAGQLITAYALGVALGAPLLALLTGRLER   77 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            445667777888888888888888889999998887           999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHH
Q 026854          105 KLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA  184 (232)
Q Consensus       105 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~  184 (232)
                      |++++....++.++.++..+++|++.+.+.+++.++..|.++++..+..+++.|+++|++++++.+....++..+|..++
T Consensus        78 r~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLG  157 (394)
T COG2814          78 RRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG  157 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccchhHHHHHHHHHHHHHHHHHhcccc
Q 026854          185 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  216 (232)
Q Consensus       185 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  216 (232)
                      .++-|.+||+.+|+..+.+.++..+..+..+|
T Consensus       158 t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         158 TFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999988888888

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.88  E-value=6.8e-21  Score=151.25  Aligned_cols=184  Identities=12%  Similarity=0.030  Sum_probs=155.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR  104 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  104 (232)
                      ++.|+.+..+.+..++.....|......|.+.++.+           .+..+.++..+...++..++.++.|+++||+||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~gr   84 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLG-----------ISEGVAGQSVTVTAFVAMFASLFITQTIQATDR   84 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence            345565555555555555555566566787877766           888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHH
Q 026854          105 KLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA  184 (232)
Q Consensus       105 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~  184 (232)
                      |+.+..+..+.+++.+.....++.+.+++.+++.|++.+...+...+++.|++|+++|+++.++.....++|..++|.++
T Consensus        85 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~  164 (394)
T PRK10213         85 RYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLG  164 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888999999999999999998999999999999999999999999999999999999999


Q ss_pred             HHHhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          185 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       185 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +.+.+..||+..+++.+++.++..+......||++
T Consensus       165 ~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        165 SFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            99999999999998887766665555544456654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.88  E-value=6.7e-21  Score=151.22  Aligned_cols=179  Identities=9%  Similarity=0.017  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH
Q 026854           30 TTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV  109 (232)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  109 (232)
                      ..+.+.+..+......+......|.+.++++           .+..+.++..+...++..++.++.|+++||+|||+++.
T Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~   78 (390)
T PRK03545         10 RVVTLALAAFIFNTTEFVPVGLLSDIAQSFH-----------MQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLI   78 (390)
T ss_pred             HHHHHHHHHHHHHhHHHHHHcchHHHHhHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            3444444444433344444455788887766           89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhh
Q 026854          110 LMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVT  189 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  189 (232)
                      .+..+.+++.+...+.++.+.+.+.+++.|++.+...+...+++.|++|+++|+++.|+......+|..++|.+.+.+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~  158 (390)
T PRK03545         79 GLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ  158 (390)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999999998888899999999999999988888888889999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          190 SCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       190 ~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ..||+..+++.+++.++..+..+...||.+
T Consensus       159 ~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        159 YLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999988887777666555556543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.88  E-value=2.7e-21  Score=158.09  Aligned_cols=199  Identities=20%  Similarity=0.313  Sum_probs=135.4

Q ss_pred             chhhhcch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchh------------hHHHH
Q 026854           18 SFFTLFSR----KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNS------------LYVDV   81 (232)
Q Consensus        18 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~   81 (232)
                      ++++++++    ++++.++.....+++..+.+|+...|.|.+.++.+           .+..+            .....
T Consensus       273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G-----------~~~~~~~~~~~~~~~~~~~~~~  341 (502)
T TIGR00887       273 SWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIG-----------YSPPAATNNAYEELYKTAVGNL  341 (502)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHc-----------CCCCccchhHHHHHHHHHHHHH
Confidence            46666642    22233444445556666777888888898886655           22111            11123


Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 026854           82 FITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQS----AVVTTVLLFGVRMCATGTITVATIYAPEIY  157 (232)
Q Consensus        82 ~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  157 (232)
                      .+..++.+++.++.++++||+|||++++++..++.++...+....+    ........+...++..+..+..+.+.+|.+
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            3445667788899999999999999998888777776665554221    111111111222223345677888899999


Q ss_pred             ccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc----------chhHHHHHHHHHHHHHHHHHhcccccccCCCchhhH
Q 026854          158 PTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC----------HLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAV  227 (232)
Q Consensus       158 p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  227 (232)
                      |++.|+++.|+.+..++++++++|.+.+++.+..          +....+.+++++.+++.+.. +++|||+++++||.+
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~  500 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELS  500 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhh
Confidence            9999999999999999999999999999998742          34557777877777766654 566999999887754


Q ss_pred             H
Q 026854          228 D  228 (232)
Q Consensus       228 ~  228 (232)
                      +
T Consensus       501 ~  501 (502)
T TIGR00887       501 G  501 (502)
T ss_pred             C
Confidence            4

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.88  E-value=7.4e-22  Score=151.08  Aligned_cols=189  Identities=14%  Similarity=0.082  Sum_probs=169.2

Q ss_pred             hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHH
Q 026854           20 FTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIV   99 (232)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~   99 (232)
                      ++..++.+++.++..++.+.+..+..-.+..-.|.+.++.+           .|.++.+...+...+...++.++.|.++
T Consensus        20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~-----------lsk~~lG~i~s~f~i~YG~sKf~~G~~s   88 (448)
T COG2271          20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGG-----------LSKTQLGILGSAFSITYGVSKFVMGVLS   88 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            33443444455666666677777777788888999988776           9999999999999999999999999999


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhch
Q 026854          100 DKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMV  179 (232)
Q Consensus       100 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  179 (232)
                      ||.+.|..+.++.+++++..+++.+.++.+.+.++..+.|.+++..+|.+...++.++|+++||+..++.+...++|+.+
T Consensus        89 Dr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal  168 (448)
T COG2271          89 DRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL  168 (448)
T ss_pred             ccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHH--HHHhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          180 CPLVA--VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       180 ~~~i~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      .|.+.  +++.++.+|+..|++-+++.++.+++.++..++++
T Consensus       169 ~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P  210 (448)
T COG2271         169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP  210 (448)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999  89999889999999999999988888887776654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.87  E-value=6.5e-21  Score=153.25  Aligned_cols=178  Identities=11%  Similarity=0.055  Sum_probs=151.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH
Q 026854           30 TTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV  109 (232)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  109 (232)
                      .....++.+++..+..+....+.|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~   92 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLG-----------LSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMG   92 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHH
Confidence            3344455555666666677788898887776           88899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhh
Q 026854          110 LMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVT  189 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  189 (232)
                      ++.++..++.+.....++.+.+.+.+++.+++.+...+....+++|++|+++|++++++.+....+|+.++|.+.+++.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663         93 IGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888888888888888888888888889999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          190 SCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       190 ~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      ..||+..+.+.++..++..+...+..||+
T Consensus       173 ~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        173 HYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999888776665544444444554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.87  E-value=1.1e-20  Score=149.65  Aligned_cols=182  Identities=15%  Similarity=0.125  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      +..+......+.............|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~   73 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLS-----------TPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL   73 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH
Confidence            33333434444444454555556677776665           8889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh
Q 026854          109 VLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV  188 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  188 (232)
                      ..+..+..++.+.....++.+...+.+++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710        74 LLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888888888889999999988888999999999999999999999999999999999999999999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHhcccccccCC
Q 026854          189 TSCHLRLAVILFEVVFVLAIASSLLFPFETKGR  221 (232)
Q Consensus       189 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  221 (232)
                      +..+|+..+++.++...+..+..+...||++++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       154 VWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999888887777766666666776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.87  E-value=3.1e-20  Score=147.85  Aligned_cols=183  Identities=16%  Similarity=0.169  Sum_probs=156.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR  104 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  104 (232)
                      +.+++.+...++.++...+..+......|.+.++.+           .+..+.++..+...++..++.++.|+++||+||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~   76 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFG-----------LTTVDAASLISAALISRWFGALMFGLWGDRYGR   76 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            456677777788888888888888888898887776           888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHH
Q 026854          105 KLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA  184 (232)
Q Consensus       105 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~  184 (232)
                      |+++..+..+..++.+...+.++.+.+.+.+++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+++.+.
T Consensus        77 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~  156 (405)
T TIGR00891        77 RLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVY  156 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888888899999999999888899999999999999999999999999999999999999


Q ss_pred             HHHhhccc--hhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          185 VGLVTSCH--LRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       185 ~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +.+.+..+  |+..+.+.++..++. +......||++
T Consensus       157 ~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~  192 (405)
T TIGR00891       157 SLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAE  192 (405)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence            99888766  888777655444443 33344456654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.87  E-value=2.6e-20  Score=152.08  Aligned_cols=182  Identities=17%  Similarity=0.109  Sum_probs=158.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS  107 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  107 (232)
                      +..+..+++..+.............|.+.++++           .+..+.++..+.+.++...+.++.|+++||+|||+.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~-----------~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~   73 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLG-----------ASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL   73 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            345566677777788888888888999998776           788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccc-ccchhhhhhHHHHHhhhhhhchhHHHHHH
Q 026854          108 MVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIY-PTSARTTGAGVASAVGRVGGMVCPLVAVG  186 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  186 (232)
                      ++.+..+..++.+.....++.+.+++.+.+.|++.+...+.....+.+.+ |+++|+++.|+......+|..++|.++++
T Consensus        74 l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~  153 (495)
T PRK14995         74 LMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGI  153 (495)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888887777776665 77999999999999999999999999999


Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          187 LVTSCHLRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       187 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      +.++.||++.|++...+..+..++..+..||.++
T Consensus       154 l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        154 LLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             hhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999998887777776666666676543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.86  E-value=1.8e-20  Score=149.44  Aligned_cols=183  Identities=15%  Similarity=0.129  Sum_probs=156.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH
Q 026854           26 KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRK  105 (232)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  105 (232)
                      +++..+...+...+...+..+......|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r   80 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFG-----------LDVAQMGWAFSAGILGLLPGALLGGRLADRIGRK   80 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            34445555666667777777777888888887766           8889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          106 LSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      +++..+..+..++.+.....++.+.+.+.+++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+++.+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  160 (406)
T PRK11551         81 RILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV  160 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888877778888888899999999988888999999999999999999999999999999999999998


Q ss_pred             HHhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          186 GLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       186 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      .+.+..+|+..+++.+++..+..+....+.||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        161 LAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            8888889998888877766666555555567754

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.86  E-value=4.6e-20  Score=144.13  Aligned_cols=172  Identities=16%  Similarity=0.168  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHHHHHHH-HhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHH
Q 026854           36 VLFFANAFSYYGAVLLTS-KLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVL  114 (232)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~  114 (232)
                      +..+.............| .+.++.+           .+..+.++..+...++..++.++.|+++||+|||+++..+..+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~   71 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELG-----------LSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLL   71 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCST-----------TTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhh
Confidence            345555556666666677 5666655           8889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchh
Q 026854          115 ACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLR  194 (232)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~  194 (232)
                      .+++.+...+.++.+.+.+.+++.|++.+...+....++.|++|+++|+++.++......+|..++|.+++.+.+..+|+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~  151 (352)
T PF07690_consen   72 FALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWR  151 (352)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHC
T ss_pred             hhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccc
Confidence            99985555555666688889999999999999999999999999999999999999999999999999999999888999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccc
Q 026854          195 LAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      ..+++.++..++..++...+.+++
T Consensus       152 ~~~~~~~~~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  152 WAFLISAILSLIAAILFILFLPEP  175 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCC---
T ss_pred             cccccccchhhhhhhhHhhhhhhc
Confidence            999999988888877544444443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.86  E-value=3.4e-20  Score=149.87  Aligned_cols=207  Identities=15%  Similarity=0.061  Sum_probs=145.0

Q ss_pred             CchhhhhhhhhhcccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHH
Q 026854            1 MISMTRKITDKLKSGFSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVD   80 (232)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (232)
                      |++..++...+.+-+....+.++++..|+.+...++...........+....|.+.++ +           .+..+.++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g-----------~s~~~~g~~   68 (452)
T PRK11273          1 MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-----------FSRGDLGFA   68 (452)
T ss_pred             CcccccCCcCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-C-----------CCHHHHHHH
Confidence            3444444444443344444445533333322223333333333334455667766644 5           888999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 026854           81 VFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH----QSAVVTTVLLFGVRMCATGTITVATIYAPEI  156 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~  156 (232)
                      .+...++..++.++.|+++||+|||++++.+..+.++..+...+.    .+.+...+.+++.|++.+...+.....+.|+
T Consensus        69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~  148 (452)
T PRK11273         69 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  148 (452)
T ss_pred             HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence            999999999999999999999999999999999888888777664    2566677778888888887777777788999


Q ss_pred             cccchhhhhhHHHHHhhhhhhch-hHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          157 YPTSARTTGAGVASAVGRVGGMV-CPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       157 ~p~~~r~~~~~~~~~~~~~g~~~-~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +|+++|++++++.+....+|+.+ +|.+...+....+|+..+++.++...+..++..++.||++
T Consensus       149 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        149 WSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             CChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            99999999999998888888644 5544333333448998888887777766666666656653

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.86  E-value=4.9e-20  Score=145.91  Aligned_cols=181  Identities=12%  Similarity=0.076  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      +..+...+..+......+......|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~   71 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVG-----------ISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHIL   71 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcC-----------CCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence            34455566666666666677777888887776           8888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh
Q 026854          109 VLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV  188 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  188 (232)
                      ..+..+.+++.+...+.++.+.+++.+++.|++.+...+.....+.|++|+++|+++.++......++..++|.+.+++.
T Consensus        72 ~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         72 LFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence            99999999999988889999999999999999988888888888999999999999999999888999999999999999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          189 TSCHLRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       189 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      +..+|+..+.+.++...+..+..+...||.++
T Consensus       152 ~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~  183 (382)
T PRK10091        152 QEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD  183 (382)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            98999999999888777666665666677543

>PRK10504 putative transporter; Provisional

Probab=99.86  E-value=7.7e-20  Score=148.58  Aligned_cols=181  Identities=11%  Similarity=0.049  Sum_probs=156.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL  106 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  106 (232)
                      .++.++.+.+..++.....+....+.|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~   76 (471)
T PRK10504          8 VRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLG-----------ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN   76 (471)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            4556677777788888888888889999998776           88888888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHH
Q 026854          107 SMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVG  186 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  186 (232)
                      +++.+..+..++.+.....++.+.+.+.+++.|++.+...+...+++.|.+|+++|+++.++.+...++|..++|.+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~  156 (471)
T PRK10504         77 IFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL  156 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999888888877777777888888899999999998889999999999999999999999999999999999999999


Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          187 LVTSCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       187 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      +.+..||++.|.+......+..+......|+.
T Consensus       157 l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        157 LVEYASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999999999887777666666665555554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.86  E-value=8.8e-20  Score=148.79  Aligned_cols=194  Identities=18%  Similarity=0.196  Sum_probs=135.0

Q ss_pred             chhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHH
Q 026854           18 SFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAI   97 (232)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (232)
                      ++++++++ +++.+.......++....+|....|.|.+.++..          +.+..+..+......++..++.++.|+
T Consensus       240 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~~~~~~~~~~~~~~~~~~~~g~  308 (490)
T PRK10642        240 SFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNL----------HYSEDHGVLIIIAIMIGMLFVQPVMGL  308 (490)
T ss_pred             CHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566643 4454544444455566778888889999885432          266666667777778889999999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHH-HH--hhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhh
Q 026854           98 IVDKIGRKLSMVLMFVLACIFLLP-LV--FHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR  174 (232)
Q Consensus        98 l~dr~grr~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  174 (232)
                      ++||+|||+.+..+.....+.... ..  ..++...+.+..++.+++.+...+....+.+|.+|++.|+++.|+.+..+.
T Consensus       309 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~  388 (490)
T PRK10642        309 LSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV  388 (490)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH
Confidence            999999999888777654433322 21  123344455556666666666667777888899999999999999888888


Q ss_pred             hhhchhHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHhcccccccCCCc
Q 026854          175 VGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETKGREL  223 (232)
Q Consensus       175 ~g~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  223 (232)
                      +++.++|.+.+++.+..+ ++.++++..+..+++.+..+ +.||++++..
T Consensus       389 ~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~~~  437 (490)
T PRK10642        389 LVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCCCC
Confidence            888899999999988654 45555555555555554444 4589876544

>PRK10054 putative transporter; Provisional

Probab=99.86  E-value=6.8e-20  Score=145.59  Aligned_cols=178  Identities=12%  Similarity=0.062  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSS-GDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS  107 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  107 (232)
                      |..+.+....++.....+....+.|.+.+ +.+           .+..+.++..+...++..+++++.|+++||+|||++
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g-----------~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~   75 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYS-----------LSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRY   75 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Confidence            44556666777777777777777777774 344           889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHH
Q 026854          108 MVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGL  187 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  187 (232)
                      +.++.....++.+...+.++.+...+.+.+.+...+...+....+.+|..|+++|+++.++.+...++|..++|.+.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l  155 (395)
T PRK10054         76 MLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL  155 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888887777778777766666666666666778889999999999999999999999999999999999988


Q ss_pred             hhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          188 VTSCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       188 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      .+ .+|+..+.+.+++.++..+...++.||+
T Consensus       156 ~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        156 VM-QSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            75 6899888887777776655555544554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.86  E-value=7.3e-20  Score=153.46  Aligned_cols=180  Identities=15%  Similarity=0.147  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS  107 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  107 (232)
                      |+.++.+.+..+...+....+...+|.+..+.+           .+..+.++..+...++.+++.+++|+++||+|||+.
T Consensus       166 ~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~g-----------ls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~  234 (742)
T TIGR01299       166 WALFFVLGLALMADGVEVFVVGFVLPSAEKDLC-----------IPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQC  234 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            333333444444444444556667787776665           788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHH
Q 026854          108 MVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGL  187 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  187 (232)
                      ++++.++.+++.++..+.++.+.+++.+++.|++.++..+...++++|.+|++.|++..++......+|.++++.++..+
T Consensus       235 lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       235 LLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888888888999999999999999999999999999999999999999999999999999999888776


Q ss_pred             hhcc-------------chhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          188 VTSC-------------HLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       188 ~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ....             +|+..+++.++. .+..++..+++||++
T Consensus       315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp-~ll~ll~~~~lPESP  358 (742)
T TIGR01299       315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFP-CVFAIGALTFMPESP  358 (742)
T ss_pred             HHhccchhccccccccccHHHHHHHHHHH-HHHHHHHHHHcCCCH
Confidence            6543             466655554444 444445556678874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.85  E-value=8.9e-20  Score=149.13  Aligned_cols=190  Identities=15%  Similarity=0.158  Sum_probs=158.2

Q ss_pred             cchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHH
Q 026854           17 SSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSA   96 (232)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   96 (232)
                      .+..+..++.+++.+..+++.++...+..+......|.+.++.+           .+..+.++..+...++..++.++.|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~s~~~~~~~~~~~~~~~~~~~~~~g   76 (496)
T PRK03893          8 IPWYRHLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFG-----------LTTVQAASLISAAFISRWFGGLLLG   76 (496)
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666677777777778777887788888888877665           8888899999999999999999999


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhh
Q 026854           97 IIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVG  176 (232)
Q Consensus        97 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  176 (232)
                      +++||+|||+.+..+..+.+++.+...+.++.+.+.+.+++.|++.+...+....++.|.+|+++|+++.++......+|
T Consensus        77 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  156 (496)
T PRK03893         77 AMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIG  156 (496)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888888888889999999999988888999999999999999999999999999999


Q ss_pred             hchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          177 GMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       177 ~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      ..++|.+.+.+.+..+|+..+.+......+ .+......||+
T Consensus       157 ~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~-~~~~~~~~p~~  197 (496)
T PRK03893        157 AVVAAQVYSLVVPVWGWRALFFIGILPIIF-ALWLRKNLPEA  197 (496)
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhCCCc
Confidence            999999999999999999888764433333 33333344554

>TIGR00895 2A0115 benzoate transport

Probab=99.85  E-value=2.6e-20  Score=147.81  Aligned_cols=182  Identities=16%  Similarity=0.149  Sum_probs=153.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL  106 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  106 (232)
                      .++........++...........+.|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~   83 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWG-----------LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR   83 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccC-----------CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH
Confidence            3444455555555666666667777888887765           78888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHH
Q 026854          107 SMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVG  186 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  186 (232)
                      .+..+..+..++.+.....++.+...+.+++.|++.+...+...+++.|.+|+++|+++.++......+|..++|.+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  163 (398)
T TIGR00895        84 VLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW  163 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHH
Confidence            99999998888888888888888888888999998888889999999999999999999999999999999999999999


Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          187 LVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       187 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +.+..||+..+.+.+++..+..+....+.||+.
T Consensus       164 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             HhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            999999998888876666666655566667653

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.85  E-value=8.2e-20  Score=146.59  Aligned_cols=166  Identities=15%  Similarity=0.142  Sum_probs=145.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH
Q 026854           26 KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRK  105 (232)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  105 (232)
                      .+++......+.++...+..+......|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r   83 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLG-----------LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK   83 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            34455666666677777777777777887776665           8888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          106 LSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      +++..+.....++.+...+.++.+.+.+.+++.|++.+...+....++.|.+|+++|+++.++......+|..+++.+.+
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~  163 (426)
T PRK12307         84 PLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP  163 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHH
Confidence            99999999999999988888899999999999999999889999999999999999999999999999999999999999


Q ss_pred             HHhhccchhHHHHHHHH
Q 026854          186 GLVTSCHLRLAVILFEV  202 (232)
Q Consensus       186 ~l~~~~g~~~~~~~~~~  202 (232)
                      .+.+..+|+..+++...
T Consensus       164 ~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        164 SFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             HHcccCCHHHHHHHHHH
Confidence            99888899988876443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.85  E-value=3.6e-20  Score=150.98  Aligned_cols=179  Identities=10%  Similarity=0.064  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVL  110 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  110 (232)
                      +..+.+..+.............|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   72 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLG-----------SSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLI   72 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------CChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHH
Confidence            344555566666666677778898887776           788888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc
Q 026854          111 MFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS  190 (232)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  190 (232)
                      +..+..++.+.....++.+.+.+.+++.|++.+...+...+++.|.+|+++|+++.++......+|..++|.+++++.++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  152 (485)
T TIGR00711        73 STFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN  152 (485)
T ss_pred             HHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC
Confidence            99999999998888889999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          191 CHLRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       191 ~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      .+|++.+++...+.++..+...+..||+++
T Consensus       153 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       153 YHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             cCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            999999988877777666666666666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.85  E-value=6.6e-20  Score=143.99  Aligned_cols=168  Identities=12%  Similarity=-0.068  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 026854           41 NAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLL  120 (232)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  120 (232)
                      +......+....|.+.++++           .+..+.++..+...++..++.++.|+++||+|||+++..+......+..
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~-----------~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   71 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDID-----------VSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG   71 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhC-----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            34555667777888887776           8889999999999999999999999999999999887655554444433


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHH
Q 026854          121 PLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILF  200 (232)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~  200 (232)
                      .....++...+.+.+++.|++.+. ........+|++|+++|++++++.+....+|..+++.+.+++.+..||+..|.+.
T Consensus        72 ~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~  150 (368)
T TIGR00903        72 RLLDPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI  150 (368)
T ss_pred             HHHHhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            223336788899999999998875 4555566699999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhcccccccC
Q 026854          201 EVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       201 ~~~~~~~~~~~~~~~~e~~~  220 (232)
                      +++.++..++.++..||+++
T Consensus       151 ~~l~~~~~~~~~~~lp~~p~  170 (368)
T TIGR00903       151 AAVAAAGIILVLAALPALPF  170 (368)
T ss_pred             HHHHHHHHHHHHHHcCCCCC
Confidence            88887777777777787653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.85  E-value=3.9e-20  Score=146.47  Aligned_cols=169  Identities=13%  Similarity=0.113  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 026854           41 NAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLL  120 (232)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  120 (232)
                      .....+......|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~g-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   74 (399)
T TIGR00893         6 NYLDRANLSFAAPMLQEDLG-----------LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTG   74 (399)
T ss_pred             HHHHHHhhhHhHHHHHHhhC-----------CChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHH
Confidence            34444556666777776665           8889999999999999999999999999999999999999999998888


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHH
Q 026854          121 PLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILF  200 (232)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~  200 (232)
                      ...+.++.+.+.+.+++.|++.+...+....++.|.+|+++|+++.++......+|..++|.+.+.+.+..+|+..+.+.
T Consensus        75 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  154 (399)
T TIGR00893        75 LQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE  154 (399)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence            88888899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhcccccccC
Q 026854          201 EVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       201 ~~~~~~~~~~~~~~~~e~~~  220 (232)
                      ++...+..+..++..||+++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       155 GVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHHHHHHhhheecCCCC
Confidence            88777776666666666543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.85  E-value=2.7e-19  Score=145.32  Aligned_cols=182  Identities=14%  Similarity=0.190  Sum_probs=144.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhc
Q 026854           24 SRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIG  103 (232)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g  103 (232)
                      ++++++.+...+...+......+....+.|.+.++.+           .+..+.++..+...++..++.++.|+++||+|
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-----------ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G   99 (476)
T PLN00028         31 ARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLN-----------LTKSDIGNAGIASVSGSIFSRLAMGPVCDLYG   99 (476)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3455666677777777777777777778888887776           88888888888888999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHH
Q 026854          104 RKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLV  183 (232)
Q Consensus       104 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  183 (232)
                      ||+++..+.++.+++.+...+.++.+.+.+.+++.|++.+... ....+++|++|+++|+++.|+.+...++|+.+++.+
T Consensus       100 ~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~  178 (476)
T PLN00028        100 PRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLL  178 (476)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888888888888888888888888888776543 345678999999999999999998888888887776


Q ss_pred             HHHHhh---------ccchhHHHHHHHHHHHHHHHHHhccccc
Q 026854          184 AVGLVT---------SCHLRLAVILFEVVFVLAIASSLLFPFE  217 (232)
Q Consensus       184 ~~~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~e  217 (232)
                      .+.+.+         ..||+..|++.+++.++..+..+++.++
T Consensus       179 ~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        179 MPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            665532         2489999998888877766666555433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.85  E-value=1.6e-19  Score=143.49  Aligned_cols=174  Identities=12%  Similarity=0.070  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHH
Q 026854           36 VLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLA  115 (232)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~  115 (232)
                      ...+....+........|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+.++.+..+.
T Consensus        10 ~~~~~~~~~~~~~~~~lp~~~~~~~-----------~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~   78 (392)
T PRK10473         10 ALVLLYPAGIDMYLVGLPRIAADLN-----------ASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALF   78 (392)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHH
Confidence            3344444455555567888877665           88888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhH
Q 026854          116 CIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRL  195 (232)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~  195 (232)
                      .++.......++.+...+.+++.|++.+...+..+.++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+.
T Consensus        79 ~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~  158 (392)
T PRK10473         79 IIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQS  158 (392)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH
Confidence            88888888888888888888889988888888899999999999999999999999999999999999998888889999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccccC
Q 026854          196 AVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      .+++.+++..+..+......||+++
T Consensus       159 ~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        159 LFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            8988888877777666666677643

>PRK03699 putative transporter; Provisional

Probab=99.84  E-value=4.6e-19  Score=140.91  Aligned_cols=176  Identities=15%  Similarity=0.198  Sum_probs=148.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH
Q 026854           26 KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRK  105 (232)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  105 (232)
                      +++|.++...+.++......+......|.+.++.+           .+..+.++..+...++..++.++.|++.||+|||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~-----------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r   72 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFN-----------LPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK   72 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            44566666666677666667777788888887766           8889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          106 LSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      +++..+..+..++.+...+.++.+.+.+.+++.|++.+...+....++.|.+|+++|+.+.+..+....+++.++|.+.+
T Consensus        73 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  152 (394)
T PRK03699         73 RQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAA  152 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888888888888889999999888888888899999999999999999988888899999999988


Q ss_pred             HHhh-ccchhHHHHHHHHHHHHHHHHHh
Q 026854          186 GLVT-SCHLRLAVILFEVVFVLAIASSL  212 (232)
Q Consensus       186 ~l~~-~~g~~~~~~~~~~~~~~~~~~~~  212 (232)
                      .+.+ ..+|+..+.+.++..++..+..+
T Consensus       153 ~l~~~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        153 YLLARSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            8765 46899998887777665554433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.84  E-value=3.2e-19  Score=141.78  Aligned_cols=184  Identities=11%  Similarity=0.052  Sum_probs=150.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH
Q 026854           26 KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRK  105 (232)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  105 (232)
                      +.+|..+.......+..+.........|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~-----------~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr   73 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLN-----------VREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR   73 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh
Confidence            34454555555555555555555556777776665           8889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          106 LSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      +.+..+.....++.+.....++.+.+.+.+++.|++.+...+....+..|.+|.++|+.+.++.+....++..++|.+.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~  153 (394)
T PRK11652         74 PVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGG  153 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888778888888888999998887777777888899999999999999998888999999999999


Q ss_pred             HHhhccchhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          186 GLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       186 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      .+.+..||+..+++.++...+..+...++.||+++
T Consensus       154 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        154 LLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            99998899999988877766655555555677643

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.84  E-value=2.2e-19  Score=140.96  Aligned_cols=166  Identities=11%  Similarity=0.059  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHH
Q 026854           37 LFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLAC  116 (232)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~  116 (232)
                      ..+.............|.+..+.+           .+..+.++..+...++..++.++.|+++||+|||++++.+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~   75 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVLAGT-----------GSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRA   75 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-----------ccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHH
Confidence            344444444445555666765554           788899999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhhh-----hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc
Q 026854          117 IFLLPLVFHQ-----SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC  191 (232)
Q Consensus       117 ~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  191 (232)
                      ++........     +.+.+.+.+++.|++.+...+...++++|++|+++|+++.++.+....+|..++|.+.+.+.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  155 (365)
T TIGR00900        76 VLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL  155 (365)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8777777665     88888889999999999889999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhc
Q 026854          192 HLRLAVILFEVVFVLAIASSLL  213 (232)
Q Consensus       192 g~~~~~~~~~~~~~~~~~~~~~  213 (232)
                      ||+..+++.++..++..+..+.
T Consensus       156 g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       156 GIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Confidence            9998888877666655544443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.83  E-value=4.6e-19  Score=141.43  Aligned_cols=170  Identities=16%  Similarity=0.061  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 026854           40 ANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFL  119 (232)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~  119 (232)
                      ........+....|.+.++++           .+..+.++..+...++..++.++.|+++||+|||+.+..+.....++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~-----------~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~   92 (406)
T PRK15402         24 ATYIANDMIQPGMLAVVEDFN-----------AGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTC   92 (406)
T ss_pred             HHHhhhhhHhcchHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            333344444444566665555           788888999999999999999999999999999999999999988888


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHH
Q 026854          120 LPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVIL  199 (232)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~  199 (232)
                      +.....++.+.+.+.+++.|++.+...+.....+.|.+|+++|+++.++......++..++|.+.+.+.+..+|+..+++
T Consensus        93 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~  172 (406)
T PRK15402         93 LAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL  172 (406)
T ss_pred             HHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence            88888888888888899999888777788889999999999999999999888889999999999999998899999988


Q ss_pred             HHHHHHHHHHHHhcccccccC
Q 026854          200 FEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       200 ~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      .+++.++..+..+...||+++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        173 FAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCCCc
Confidence            888877776666666677653

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.83  E-value=4.9e-19  Score=141.46  Aligned_cols=149  Identities=15%  Similarity=0.122  Sum_probs=133.3

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      .+..+..+..+.+.++..++.++.|+++||+|||++++.+..+..++.+.....++.+.+.+.+++.|++.+...+..+.
T Consensus        48 ~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~  127 (413)
T PRK15403         48 ADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYV  127 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888899999999999999999999999999999999999999998888888889989999999999988766677788


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      ++.|.+|+++|++++++.+....++..++|.+++.+.+..||+..|++.++..++..+..++..||+++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        128 TVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            899999999999999999999999999999999999998899999999888877776665666688754

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.83  E-value=4.2e-21  Score=148.37  Aligned_cols=188  Identities=14%  Similarity=0.046  Sum_probs=165.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL  106 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  106 (232)
                      ..+...++++....+...-|.+..-.+...+.++           .+++..++......+...+++++.|+++||++||+
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fn-----------i~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~   99 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFN-----------ISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR   99 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcC-----------CCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce
Confidence            3455666667777777777777665555554443           88899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHH
Q 026854          107 SMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVG  186 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  186 (232)
                      ++.+|..+..++.+...+...+|.+.+++.+.|++...+.++.+++++|.+|.++|++++++.+....+|..+|-..+..
T Consensus       100 v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~  179 (493)
T KOG1330|consen  100 VIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV  179 (493)
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             Hhhccc-hhHHHHHHHHHHHHHHHHHhcccccccCCCchh
Q 026854          187 LVTSCH-LRLAVILFEVVFVLAIASSLLFPFETKGRELKD  225 (232)
Q Consensus       187 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  225 (232)
                      +.+..+ |++.+...+++.++.+++.+++.+|++++..++
T Consensus       180 va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  180 VASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             eccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence            888777 899999999999999998888888877644433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.83  E-value=4.8e-19  Score=143.59  Aligned_cols=176  Identities=14%  Similarity=0.079  Sum_probs=148.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh-hchH
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK-IGRK  105 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr  105 (232)
                      +.+.++.+.+..++..+.+|....++|.|.++.+        +.|.+..+.+.......++..++.+++|+++|| +|||
T Consensus         8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~--------~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~   79 (475)
T TIGR00924         8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQA--------GLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK   79 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH
Confidence            3455667777788888999999999999986530        023888999999999999999999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccch---hhhhhHHHHHhhhhhhchhHH
Q 026854          106 LSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSA---RTTGAGVASAVGRVGGMVCPL  182 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~g~~~~~~  182 (232)
                      +++.++..+.+++.+.+.+.++.+.+.+.+.+.+++.+...+...++++|.+|+++   |+++.++.+...++|+.++|.
T Consensus        80 ~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~  159 (475)
T TIGR00924        80 KTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL  159 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHH
Confidence            99999999999998888887777677777788888888888999999999998764   889999999999999999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHH
Q 026854          183 VAVGLVTSCHLRLAVILFEVVFVLAIAS  210 (232)
Q Consensus       183 i~~~l~~~~g~~~~~~~~~~~~~~~~~~  210 (232)
                      +.+++.++.||+..|.+.++..+++.+.
T Consensus       160 l~g~l~~~~g~~~~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       160 LAGVIAENYGYHVGFNLAAVGMVIGLLT  187 (475)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            9999999889999888877655554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.83  E-value=1.7e-19  Score=142.09  Aligned_cols=173  Identities=13%  Similarity=0.062  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHH
Q 026854           33 LLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMF  112 (232)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~  112 (232)
                      ...+.........+....+.|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~   75 (377)
T TIGR00890         7 VGTVIMCFTSGYVYTWTLLAPPLGRYFG-----------VGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGG   75 (377)
T ss_pred             HHHHHHHHHhhHHhhhhhHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhH
Confidence            3344444444446677778888887776           88999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc
Q 026854          113 VLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH  192 (232)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g  192 (232)
                      .+.+++.+...+.++.+.+.+.+.+.|++.+...+.......|++| ++|+++.++......+|..+++.+.+.+.+..+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (377)
T TIGR00890        76 ILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG  154 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc
Confidence            9999999888889999999899999998888777777777888887 569999999999999998887777777778889


Q ss_pred             hhHHHHHHHHHHHHHHHHHhccccc
Q 026854          193 LRLAVILFEVVFVLAIASSLLFPFE  217 (232)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~e  217 (232)
                      |+..+.+.++..++..+..+++.+|
T Consensus       155 ~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       155 VPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheec
Confidence            9999998888877776665555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.83  E-value=5.7e-19  Score=141.42  Aligned_cols=176  Identities=10%  Similarity=-0.048  Sum_probs=144.5

Q ss_pred             HHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh
Q 026854           46 YGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH  125 (232)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  125 (232)
                      .....+.|.+.++..          +.+....++......++.+++.++.+++.||.++++.+..+..+..+..+.....
T Consensus       240 ~~~~~~~p~~~~~~~----------g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  309 (417)
T PRK10489        240 SAVRVLYPALADEVW----------QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM  309 (417)
T ss_pred             HhHHHhhHHHHHhcc----------CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc
Confidence            445567788886622          3777788888888999999999999999999888888888887777777766666


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHH
Q 026854          126 QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFV  205 (232)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~  205 (232)
                      ++.+...+..++.|++.+...+...++..|..|++.|+++.|+.+...++|..++|.+.|++.+..|....+...+++..
T Consensus       310 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~  389 (417)
T PRK10489        310 PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLL  389 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence            66666666677777777666777788999999999999999999999999999999999999999998888888888777


Q ss_pred             HHHHHHhcccccccCCCchhhHHhhh
Q 026854          206 LAIASSLLFPFETKGRELKDAVDAIE  231 (232)
Q Consensus       206 ~~~~~~~~~~~e~~~~~~~~~~~~~~  231 (232)
                      +..++.....||+++++.+|.++|..
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (417)
T PRK10489        390 IIGVLLLLVLGELRRFRQTPPEVDAS  415 (417)
T ss_pred             HHHHHHHHhcccccccccccccCCCC
Confidence            77777777778999888888777653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.82  E-value=1.6e-18  Score=138.27  Aligned_cols=176  Identities=16%  Similarity=0.126  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchh-----hHHHHHHHHhhhhhHHHHHHHHHhhhchH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNS-----LYVDVFITSFAELPGLILSAIIVDKIGRK  105 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~grr  105 (232)
                      ....++..++..........++|.+.++.+           .+..+     .++..+...++..++.++.|+++||+|||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r   84 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLG-----------VTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRK   84 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHhC-----------CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcH
Confidence            444455566666666677778888887765           44333     36778888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          106 LSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      +.+..+.....++.+.....++.+.+.+.+++.|++. +..+....++.|.+|+++|+++.++.+....+|..++|.+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  163 (408)
T PRK09874         85 IMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLG-GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG  163 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888888887777788888888888888765 445667778889999999999999999999999999999999


Q ss_pred             HHhhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          186 GLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       186 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      .+.+..+|+..+++.+++.++..+...++.||+
T Consensus       164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        164 LLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999988999999888887777766666665654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.82  E-value=2.2e-18  Score=140.40  Aligned_cols=175  Identities=17%  Similarity=0.147  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh
Q 026854           45 YYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF  124 (232)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  124 (232)
                      ++....+.|.+.++.+           .+.....+.....++..+++.++.++++||+|||+.++.+..+++++.+.+..
T Consensus       287 ~~~~~~~~p~i~~~~g-----------~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~  355 (479)
T PRK10077        287 INVVLYYAPEIFKTLG-----------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  355 (479)
T ss_pred             hhHHHHHHHHHHHHcC-----------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHH
Confidence            3344566787776555           66666667777788889999999999999999999999999988887776654


Q ss_pred             hh--h-H-HHHHHHHHHHHHHHh-hhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh------hccch
Q 026854          125 HQ--S-A-VVTTVLLFGVRMCAT-GTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV------TSCHL  193 (232)
Q Consensus       125 ~~--~-~-~~~~~~~~~~g~~~~-~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~------~~~g~  193 (232)
                      ..  + . .......++.+.+.+ ...+..+.+++|.+|++.|+++.|+.+...++++.+++.+.+.+.      +..++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~  435 (479)
T PRK10077        356 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHN  435 (479)
T ss_pred             HHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccC
Confidence            21  1 1 122222333333333 234678899999999999999999999999999999877776544      56778


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccccCCCchhhHHhh
Q 026854          194 RLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAI  230 (232)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  230 (232)
                      +..++++++..+++.+..+++.||+++++.+|.+++.
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  472 (479)
T PRK10077        436 GFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALW  472 (479)
T ss_pred             ccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence            8888888888777777777788999998887766553

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.82  E-value=1.1e-19  Score=143.19  Aligned_cols=170  Identities=15%  Similarity=0.088  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 026854           38 FFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACI  117 (232)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  117 (232)
                      ++........+....|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+.+..+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g-----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   72 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEIG-----------LSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAI   72 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHhC-----------CCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHH
Confidence            44555566666777787776665           8889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhH-HHHHHHhhccchhHH
Q 026854          118 FLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCP-LVAVGLVTSCHLRLA  196 (232)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~-~i~~~l~~~~g~~~~  196 (232)
                      +.++..+.++.+.+.+.+++.|++.+...+...+++.|++|+++|+++.++.+....+|..++| .+.+.+.+..+|+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  152 (379)
T TIGR00881        73 VNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWV  152 (379)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhH
Confidence            9998888889888999999999999888999999999999999999999999999999999999 566777777899988


Q ss_pred             HHHHHHHHHHHHHHHhcccccc
Q 026854          197 VILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      +++.+++.++..+..+.+.||+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T TIGR00881       153 FIVPGIIAIIVSLICFLLLRDS  174 (379)
T ss_pred             HHHHHHHHHHHHHHHheeeCCC
Confidence            8888877776666666665654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.82  E-value=1.3e-18  Score=136.96  Aligned_cols=176  Identities=19%  Similarity=0.217  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSK-LSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV  109 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  109 (232)
                      .+..++..+......+....+.|. +.++.+           .+..+.++..+...++..++.++.|+++||+|||+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~   71 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLG-----------LSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTT   71 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhC-----------CCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            345666666777777788888885 555555           88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh
Q 026854          110 LMFVLACIFLLPLVFHQ-SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV  188 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  188 (232)
                      ++..+..++.+...+.+ +.+.+.+.+++.|++.+ ..+....+++|++|+++|+++.++.....++|..+++.+.+.+.
T Consensus        72 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        72 LSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999988888888 88888888998888754 44567788999999999999999999888888888888877665


Q ss_pred             hc----------cchhHHH-HHHHHHHHHHHHHHhcccccc
Q 026854          189 TS----------CHLRLAV-ILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       189 ~~----------~g~~~~~-~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      +.          .+|++.+ ...+++..+..++.+...+|+
T Consensus       151 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       151 GSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             HHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence            42          3788777 333444444444444444443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.82  E-value=1.1e-18  Score=141.63  Aligned_cols=171  Identities=10%  Similarity=0.074  Sum_probs=142.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh-hch
Q 026854           26 KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK-IGR  104 (232)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~gr  104 (232)
                      +++|.++.+++..+...+.+|....+++.|.++..          +.+..+..+....+.....+..+++|+++|| +||
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~l----------g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~   80 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQL----------GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGT   80 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccch
Confidence            46677888888888899999999988888874422          3788888888888887888888899999999 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhhhhhhhhhccccccccc--hhhhhhHHHHHhhhhhhchhH
Q 026854          105 KLSMVLMFVLACIFLLPLVFHQSAV-VTTVLLFGVRMCATGTITVATIYAPEIYPTS--ARTTGAGVASAVGRVGGMVCP  181 (232)
Q Consensus       105 r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~  181 (232)
                      |++++++.++..++.+.+.+..+.. .+.+.+.+.+++.+...+...+++.|.+|++  +|+.+.++.+...++|..++|
T Consensus        81 r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~  160 (489)
T PRK10207         81 KRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL  160 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence            9999999999999998888765433 3446677788888888899999999999887  457889999999999999999


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHHH
Q 026854          182 LVAVGLVTSCHLRLAVILFEVVFVL  206 (232)
Q Consensus       182 ~i~~~l~~~~g~~~~~~~~~~~~~~  206 (232)
                      .++|++.++.||+..|++.++...+
T Consensus       161 ~l~g~l~~~~gw~~~F~i~~i~~~~  185 (489)
T PRK10207        161 SLAPVIADKFGYSVTYNLCGAGLII  185 (489)
T ss_pred             HHHHHHHHhhChHHHHHHHHHHHHH
Confidence            9999999999999988886543333

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.82  E-value=1.4e-18  Score=139.77  Aligned_cols=174  Identities=18%  Similarity=0.161  Sum_probs=138.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh-chH
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI-GRK  105 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr  105 (232)
                      +++.++.++.......+.+|++..++|.|.++..          +.+..+.+...........++.+++|+++||+ |||
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~l----------gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr   76 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQL----------KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR   76 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence            5567777788888888999999999999985432          38888999898888899999999999999999 999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccc--hhhhhhHHHHHhhhhhhchhHH
Q 026854          106 LSMVLMFVLACIFLLPLVFHQ-SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTS--ARTTGAGVASAVGRVGGMVCPL  182 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~~  182 (232)
                      ++++++.++..++.+.+.... +.....+...+..++.+...+...++++|.+|++  .|.++.++.+...++|+.++|.
T Consensus        77 r~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~  156 (493)
T PRK15462         77 MAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI  156 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence            999999999888877665432 2222333333444555566677788999999986  6999999999999999999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHH
Q 026854          183 VAVGLVTSCHLRLAVILFEVVFVLAIAS  210 (232)
Q Consensus       183 i~~~l~~~~g~~~~~~~~~~~~~~~~~~  210 (232)
                      +.+++.+..||+..|.+.++..+++.+.
T Consensus       157 l~g~L~~~~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        157 ACGYAQEEYSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence            9999999999999988866555444443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.82  E-value=4e-19  Score=143.09  Aligned_cols=179  Identities=13%  Similarity=0.074  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      +.++...+.+..............|.+.+ .+           .+..+.++..+...++..++.++.|+++||+|||+.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g-----------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~   94 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QG-----------FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL   94 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cC-----------CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh
Confidence            33333444444444444445556675553 34           8889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHH
Q 026854          109 VLMFVLACIFLLPLVFH----QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA  184 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~  184 (232)
                      ..+..+.+++.+.....    .+...+.+.+++.|++.+...+.....+.|++|+++|+++.++.+....+++.++|.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~  174 (438)
T TIGR00712        95 PAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV  174 (438)
T ss_pred             HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence            99888888877766543    34555667778888888877788888899999999999999999999999999998887


Q ss_pred             HHHhh-ccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          185 VGLVT-SCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       185 ~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +...+ ..+|+..+++.+++.++..+..+++.||++
T Consensus       175 ~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       175 LLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            76544 468999999888887776666666666643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.82  E-value=7.1e-19  Score=139.00  Aligned_cols=162  Identities=12%  Similarity=0.111  Sum_probs=142.0

Q ss_pred             HHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 026854           47 GAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQ  126 (232)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  126 (232)
                      ......|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.......+
T Consensus         9 ~~~p~~~~~~~~~~-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~   77 (377)
T PRK11102          9 MYLPALPVIAADFG-----------VSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ   77 (377)
T ss_pred             HHhccHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            33455677776655           8889999999999999999999999999999999999999999999988888888


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHH
Q 026854          127 SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL  206 (232)
Q Consensus       127 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~  206 (232)
                      +.+...+.+++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+++.+.+..+
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  157 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAIL  157 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            88888888999999988888889999999999999999999999999999999999999999988999998888887777


Q ss_pred             HHHHHhccccccc
Q 026854          207 AIASSLLFPFETK  219 (232)
Q Consensus       207 ~~~~~~~~~~e~~  219 (232)
                      ..+...+..||++
T Consensus       158 ~~~~~~~~~~~~~  170 (377)
T PRK11102        158 AAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHhCCccC
Confidence            7666666667653

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.82  E-value=2.2e-18  Score=137.48  Aligned_cols=175  Identities=24%  Similarity=0.318  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      +.........+......+....|.|.+.++.+           .+..+.+.......++.+++.++.|+++||+|||+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~  288 (406)
T PRK11551        220 TATLLLWISYFFTLIVLYFLLNWLPSLLVGQG-----------LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV  288 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            33444444455555566677778898887655           7778888888899999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh
Q 026854          109 VLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV  188 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  188 (232)
                      ..+.....++.......++.+...+..++.+++.++..+..+++..|.+|+++|+++.|+.+....+|+.++|.+.|++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  368 (406)
T PRK11551        289 LLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLL  368 (406)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence            88777666666655555566666666677777777778888899999999999999999999999999999999999999


Q ss_pred             hccchhH-HHHHHHHHHHHHHHHHhcc
Q 026854          189 TSCHLRL-AVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       189 ~~~g~~~-~~~~~~~~~~~~~~~~~~~  214 (232)
                      ++.+.+. .+.....+.+++.+..+..
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        369 ALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            8765443 3444444444444444433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.82  E-value=1.8e-19  Score=146.18  Aligned_cols=173  Identities=13%  Similarity=0.009  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHH
Q 026854           34 LWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFV  113 (232)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  113 (232)
                      ..+.+.........+....|.+.++++           .+..+.++..+...++..++.++.|+++||+|||+++..+.+
T Consensus        34 ~~~~~~~~y~~r~~~~~~~~~i~~~~~-----------~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~  102 (467)
T PRK09556         34 VFIGYLTMYLIRKNFKAAQNDMISTYG-----------LSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI  102 (467)
T ss_pred             HHHHHHHHHHHhcChhhhhHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence            333344444444555666788887776           888999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh
Q 026854          114 LACIFLLPLVF-----HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV  188 (232)
Q Consensus       114 ~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  188 (232)
                      +.++..+....     .++.+.+.+.+++.|++.+...+....+++|++|+++|++++|+......+|..+++.+..++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence            77776665554     4778888899999999998888999999999999999999999999999999999999887776


Q ss_pred             hcc---chhHHHHHHHHHHHHHHHHHhccccc
Q 026854          189 TSC---HLRLAVILFEVVFVLAIASSLLFPFE  217 (232)
Q Consensus       189 ~~~---g~~~~~~~~~~~~~~~~~~~~~~~~e  217 (232)
                      +..   +|+..+.+.+++.++..+..+++.++
T Consensus       183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~  214 (467)
T PRK09556        183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD  214 (467)
T ss_pred             HhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            653   47766776666666555555544433

>TIGR00898 2A0119 cation transport protein

Probab=99.82  E-value=2e-18  Score=141.46  Aligned_cols=187  Identities=36%  Similarity=0.620  Sum_probs=136.1

Q ss_pred             chhhhcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHH
Q 026854           18 SFFTLFSR-KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSA   96 (232)
Q Consensus        18 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   96 (232)
                      +.++++++ +.++.++...+.++.....+|....+.+.+.               .+   ........++..+++.++.+
T Consensus       315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~---~~~~~~~~~~~~i~~~~~~~  376 (505)
T TIGR00898       315 SFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG---------------GN---IYLDLFISGLVELPAKLITL  376 (505)
T ss_pred             cHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC---------------CC---hHHHHHHHHHHHHHHHHHHH
Confidence            45666653 3344444455555555566665555444322               22   23445566788889999999


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhh
Q 026854           97 IIVDKIGRKLSMVLMFVLACIFLLPLVFHQSA--VVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR  174 (232)
Q Consensus        97 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  174 (232)
                      ++.||+|||+.+.++..+.+++.+.+.+.++.  +......++.+++.+..++..+.+.+|.+|++.|++++|+.+....
T Consensus       377 ~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~  456 (505)
T TIGR00898       377 LLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMAR  456 (505)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHH
Confidence            99999999999999998888887777664432  4444455566666667778889999999999999999999999999


Q ss_pred             hhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCCchh
Q 026854          175 VGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKD  225 (232)
Q Consensus       175 ~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  225 (232)
                      +|++++|.+.+ + +..+...++.++++..+++.+..+ ++|||++++++|
T Consensus       457 ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~~  504 (505)
T TIGR00898       457 VGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETKGVPLPE  504 (505)
T ss_pred             HHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCCC
Confidence            99999999998 4 444666777787777777766654 458999887764

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.82  E-value=3e-18  Score=136.39  Aligned_cols=174  Identities=14%  Similarity=0.056  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHH
Q 026854           33 LLWVLFFANAFSYYGAVLLTSKLS-SGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLM  111 (232)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~  111 (232)
                      .+....+......+....+.|.+. ++.+           .+..+.++..+...+...+..++.|+++||+|||+++..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~   82 (400)
T PRK11646         14 FLLIDNMLVVLGFFVVFPLISIRFVDQLG-----------WAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTG   82 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHH
Confidence            344555555566566666666654 3444           8889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc
Q 026854          112 FVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC  191 (232)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  191 (232)
                      ..+..+..+.....++.+.+.+.+++.|++.+...+...+++.|.+|+++|+++.|+.+...++|..++|.+++++. ..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~  161 (400)
T PRK11646         83 MLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY  161 (400)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence            99999999888888888888888888898887778888899999999999999999999999999999999999998 56


Q ss_pred             chhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          192 HLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       192 g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      ||+..+++.+...++..+......||.
T Consensus       162 g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        162 DFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999888887777666655544455654

>PRK11043 putative transporter; Provisional

Probab=99.81  E-value=3.7e-18  Score=136.01  Aligned_cols=146  Identities=14%  Similarity=0.134  Sum_probs=127.7

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      .+..+.++..+...++..++.+++|+++||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+...+
T Consensus        38 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~  117 (401)
T PRK11043         38 TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQA  117 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            88899999999999999999999999999999999999999888888888888888888888888888887777777788


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccccc
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  217 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  217 (232)
                      ++.|.+|+++|+...+..+....++..++|.+.+++.+..||+..+++.+++.++..+..+...++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        118 LVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            899999999999999998888899999999999999999999998888877777666655544333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.81  E-value=3.6e-18  Score=138.57  Aligned_cols=180  Identities=19%  Similarity=0.264  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHH
Q 026854           34 LWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFV  113 (232)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  113 (232)
                      ..+..+...........+.|.+.++.+           .+..+.+.......++.+++.++.|+++||+|||+.+..+..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  357 (481)
T TIGR00879       289 VVLQWFQQFTGINAIMYYSPTIFENAG-----------VSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAA  357 (481)
T ss_pred             HHHHHHHHHhCCeehHHHHHHHHHHcC-----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            333333333344455667787776655           666777888888889999999999999999999999998888


Q ss_pred             HHHHHHHHHHh-----hh------hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHH
Q 026854          114 LACIFLLPLVF-----HQ------SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPL  182 (232)
Q Consensus       114 ~~~~~~~~~~~-----~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~  182 (232)
                      +..++.+.+..     .+      +........+..+....+..+....+..|.+|++.|+++.++.+...++|++++|.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~  437 (481)
T TIGR00879       358 GMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGF  437 (481)
T ss_pred             HHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666552     11      22222222333333333445777788899999999999999999999999999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCCch
Q 026854          183 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELK  224 (232)
Q Consensus       183 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  224 (232)
                      +.+.+.++.++...+++.+++++++.+..+++.||+++++.+
T Consensus       438 ~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  479 (481)
T TIGR00879       438 LFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE  479 (481)
T ss_pred             HHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence            999999988999889998888888888888888888876654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.81  E-value=5.7e-18  Score=136.21  Aligned_cols=180  Identities=17%  Similarity=0.049  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchh---hHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNS---LYVDVFITSFAELPGLILSAIIVDKIGRKLS  107 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  107 (232)
                      +....+.++...+....+....|.+.++.+.        .+.+..+   .........++..++++++|+++||+|||+.
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~   95 (432)
T PRK10406         24 IVGASSGNLVEWFDFYVYSFCSLYFAHIFFP--------SGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS   95 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3444455666666666666777777765531        0122232   3334455566677999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhch
Q 026854          108 MVLMFVLACIFLLPLVFHQSA--------VVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMV  179 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  179 (232)
                      +..+..+..++.+...+.++.        ..+.+.+++.|++.++..+...++++|++|+++|++..++.+.....|..+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~  175 (432)
T PRK10406         96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL  175 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence            999999999999888775543        357788999999999999999999999999999999999887777777777


Q ss_pred             hHHHHHHHh--------hccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          180 CPLVAVGLV--------TSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       180 ~~~i~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ++.+...+.        +..||+..|++.++..++.. ......||++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~  222 (432)
T PRK10406        176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDETS  222 (432)
T ss_pred             HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence            776655443        25699999987666555443 3344456654

>TIGR00897 2A0118 polyol permease family

Probab=99.81  E-value=2.6e-18  Score=136.97  Aligned_cols=179  Identities=8%  Similarity=-0.068  Sum_probs=134.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL  106 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  106 (232)
                      .+|.+....+..+......+....+.|.+.++.+           .+..+.++..+...++..++.++.|++.||+|||+
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g-----------~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~   79 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALG-----------LSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLK   79 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhC-----------CCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            3455555566666666655555566777776665           88899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH---h-hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhh-chhH
Q 026854          107 SMVLMFVLACIFLLPLV---F-HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGG-MVCP  181 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~-~~~~  181 (232)
                      ++..+..+.+++.+...   . ..+.+.+.+.+++.|++.+...+.....+.|.+|+++|++++|+.+...++|. .++|
T Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~  159 (402)
T TIGR00897        80 TMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGS  159 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888765442   2 24566667778888877766666677788899999999999999999999886 5789


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccc
Q 026854          182 LVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  216 (232)
Q Consensus       182 ~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  216 (232)
                      .+.+++.+..|+...++.......+..++..++.+
T Consensus       160 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  194 (402)
T TIGR00897       160 YYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNK  194 (402)
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999888888665555444333333333333333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.80  E-value=7.5e-18  Score=137.50  Aligned_cols=182  Identities=13%  Similarity=0.022  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchh--hHH--HHHHHHhhhhhHHHHHHHHHhhhc
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNS--LYV--DVFITSFAELPGLILSAIIVDKIG  103 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~g~l~dr~g  103 (232)
                      ++......+.++...+.+..+....|...+++..         +.++..  .+.  ..+...++..+++++.|+++||+|
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~G   85 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFP---------GADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYG   85 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3445555566666666666666677766655430         011111  111  235667889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhh
Q 026854          104 RKLSMVLMFVLACIFLLPLVFHQSAVV--------TTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRV  175 (232)
Q Consensus       104 rr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  175 (232)
                      ||+++.++.++++++.++..+.++...        +.+.+++.|++.++..+...++++|++|+++|+...++......+
T Consensus        86 rr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~  165 (490)
T PRK10642         86 RQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIA  165 (490)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            999999999999999999998877653        678899999999999999999999999999999999998877777


Q ss_pred             hhchhHHHHHHHh--------hccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          176 GGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       176 g~~~~~~i~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      |..+++.+...+.        +..||+..|++.+...+++ ++.....||++
T Consensus       166 G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp  216 (490)
T PRK10642        166 GFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEETP  216 (490)
T ss_pred             HHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCCh
Confidence            7777776654443        2579999998866544443 33445567764

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.80  E-value=3.9e-18  Score=138.42  Aligned_cols=176  Identities=13%  Similarity=0.061  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      +.++...+..++....++....|.|.|.++..          |.+..+.++......++.+++.+++|+++||+|||+.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~----------g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~  327 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQEL----------GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRAL  327 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence            45666666777777777788899999885432          37888888888889999999999999999999998876


Q ss_pred             HHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhh-hhchhHHHHH
Q 026854          109 VLMFVLACIFLLPLV--FHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRV-GGMVCPLVAV  185 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~i~~  185 (232)
                      ........+......  ..++.....+..++.|++..+..........|.+|++.||++.|+.+..+++ |+.++|.+.|
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G  407 (467)
T PRK09556        328 VACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLG  407 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence            655444333322222  2334444445555566544333333345667999999999999999999996 7799999999


Q ss_pred             HHhh------------ccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          186 GLVT------------SCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       186 ~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      ++.|            ..||...|.+..++.+++.+..++.
T Consensus       408 ~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        408 MIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999            5688888888877777765555433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.80  E-value=6.1e-18  Score=137.75  Aligned_cols=148  Identities=17%  Similarity=0.085  Sum_probs=122.4

Q ss_pred             CCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHH
Q 026854           71 KSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH------------QSAVVTTVLLFGV  138 (232)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~  138 (232)
                      +.+..+.++..+...++..+++++.|+++||+|||++++++..+..++.+...+.            .....+++.+++.
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~  130 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG  130 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence            4777888999999999999999999999999999999999999888877665542            2234567889999


Q ss_pred             HHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh--------hccchhHHHHHHHHHHHHHHHH
Q 026854          139 RMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIAS  210 (232)
Q Consensus       139 g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~--------~~~g~~~~~~~~~~~~~~~~~~  210 (232)
                      |++.+...+...++++|++|+++|++++++......+|..+++.+.+.+.        +..||+..+++.++..++..+.
T Consensus       131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~  210 (479)
T PRK10077        131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML  210 (479)
T ss_pred             hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988899888877765543        3468999988877666665544


Q ss_pred             Hhccccccc
Q 026854          211 SLLFPFETK  219 (232)
Q Consensus       211 ~~~~~~e~~  219 (232)
                       .+++||++
T Consensus       211 -~~~l~~s~  218 (479)
T PRK10077        211 -LYFVPETP  218 (479)
T ss_pred             -HHcCCCCc
Confidence             45568865

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.80  E-value=7.3e-18  Score=137.99  Aligned_cols=187  Identities=18%  Similarity=0.132  Sum_probs=137.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL  106 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  106 (232)
                      +++....+.+..+...+.........|.+..+..+      .....+..+.++..+...++.+++.++.|+++||+|||+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~   87 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYH------GKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKR   87 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            33444444555555555544455555555432110      001244556678888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchh
Q 026854          107 SMVLMFVLACIFLLPLVFHQS------AVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVC  180 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  180 (232)
                      .+.++.++..++.++.....+      .+.+.+.+++.|++.+...+....+++|.+|++.|+++.++.+....+|..++
T Consensus        88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g  167 (502)
T TIGR00887        88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG  167 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence            999999888888877766543      56788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-----------------------ccchhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          181 PLVAVGLVT-----------------------SCHLRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       181 ~~i~~~l~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      +.+...+..                       ..+|+..+.+.++..++. .+..+++||+++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr  229 (502)
T TIGR00887       168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPR  229 (502)
T ss_pred             HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHH
Confidence            888776532                       126887776555444443 344456699743

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.80  E-value=9.3e-18  Score=133.65  Aligned_cols=170  Identities=9%  Similarity=-0.062  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLS-SGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS  107 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  107 (232)
                      |++....+..+............+|.+. ++.+           .+..+.++..+...++..+++++.|+++||+|||++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g-----------~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~   83 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLG-----------FSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKA   83 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------ccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcch
Confidence            4555566666666666666666777765 3444           888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh---h-----hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhch
Q 026854          108 MVLMFVLACIFLLPLVF---H-----QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMV  179 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  179 (232)
                      +..+.++.+++......   .     .+.+.+++.+++.|++.+...+....+..|..|+++|+++.++......+|..+
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  163 (399)
T PRK05122         84 VVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI  163 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence            99999887776554433   1     244567788899999988888888888999999999999999988888899999


Q ss_pred             hHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 026854          180 CPLVAVGLVTSCHLRLAVILFEVVFVLAIA  209 (232)
Q Consensus       180 ~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~  209 (232)
                      +|.+++.+.+..||+..+.+..+...+..+
T Consensus       164 g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~  193 (399)
T PRK05122        164 GAPLGVLLYHWGGLAGLGLLIMLLALLGLL  193 (399)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            999999999999998777765555444433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.79  E-value=6.7e-18  Score=134.13  Aligned_cols=171  Identities=12%  Similarity=0.024  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHH
Q 026854           33 LLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMF  112 (232)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~  112 (232)
                      ..+...+...+.........+...++.+           .+..+.++..+...+...+..++.|+++||+|||++++++.
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~   75 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELH-----------YPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIAN   75 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHH
Confidence            3444455444433333333444555554           67778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc
Q 026854          113 VLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH  192 (232)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g  192 (232)
                      .+..++.+.+....+.   .+.+++.|++.+...|...++++|++|+++|+++.|+......++..++|.++|++.+.. 
T Consensus        76 ~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-  151 (393)
T PRK11195         76 GIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-  151 (393)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            9888877766555443   566788999999999999999999999999999999999999999999999999998863 


Q ss_pred             hhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          193 LRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ++..+.+.+...++.. +.....||.+
T Consensus       152 ~~~~~~i~~~~~~~~~-~~~~~l~~~~  177 (393)
T PRK11195        152 AEAALAVCALIYLLAA-LFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence            5555555444443333 3344556653

>PRK12382 putative transporter; Provisional

Probab=99.79  E-value=1.7e-17  Score=131.86  Aligned_cols=165  Identities=8%  Similarity=-0.070  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLS-SGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS  107 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  107 (232)
                      +.++...+..+............+|.+. ++.+           .+..+.++..+...++..+++++.|+++||+|||+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg-----------~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~   83 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLG-----------FGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRS   83 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHH
Confidence            3344444555555555555555666654 4454           889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhch
Q 026854          108 MVLMFVLACIFLLPLVF--------HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMV  179 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  179 (232)
                      ++.+.....++.+....        .++.+.+.+.+++.|++.+...+...+++.|.+|+++|++++++.......+..+
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~  163 (392)
T PRK12382         84 ALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAA  163 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHH
Confidence            99888776655432211        2466778888999999888878888888999999999999999999888999999


Q ss_pred             hHHHHHHHhhccchhHHHHHHHHHH
Q 026854          180 CPLVAVGLVTSCHLRLAVILFEVVF  204 (232)
Q Consensus       180 ~~~i~~~l~~~~g~~~~~~~~~~~~  204 (232)
                      +|.+++.+.+..||+..+.+.....
T Consensus       164 g~~~~~~l~~~~g~~~~~~~~~~~~  188 (392)
T PRK12382        164 GAPLGLLLHSHFGFAALALTTMVLP  188 (392)
T ss_pred             HHHHHHHHHhccChHHHHHHHHHHH
Confidence            9999999999889886655544433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.79  E-value=1.5e-18  Score=140.85  Aligned_cols=147  Identities=18%  Similarity=0.139  Sum_probs=123.0

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH---QSAVVTTVLLFGVRMCATGTITV  148 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~  148 (232)
                      .+..+.++..+...++..++.++.|+++||+|||++++.+..+..++.......   .+.+.+++.+++.|++.+...+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  147 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL  147 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhH
Confidence            557888999999999999999999999999999999999999888887777553   33447888899999999999999


Q ss_pred             hhhccccccccchhhhhhHHHHHhhhhhhchhHHHH---HHHhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          149 ATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA---VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       149 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~---~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ...+++|++|+++|+++.++.+....+|..+++.+.   +...+..+|+..+++.+...++.. ...++.||++
T Consensus       148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~  220 (481)
T TIGR00879       148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESP  220 (481)
T ss_pred             HHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCCh
Confidence            999999999999999999999999999999999998   665567799988888555544444 3444557753

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.79  E-value=2.5e-18  Score=139.58  Aligned_cols=150  Identities=11%  Similarity=0.032  Sum_probs=130.3

Q ss_pred             cCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhh
Q 026854           69 ADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF--HQSAVVTTVLLFGVRMCATGTI  146 (232)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~  146 (232)
                      ..+.+..+.+...+...++..++.++.|+++||+|||+.+..+.++..+..+....  ..+.+.+++.+++.|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            35688888999999999999999999999999999999999999888887766544  3446678888999999999999


Q ss_pred             hhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          147 TVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       147 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      +....+++|++|+++|+++.++.+....+|..++|.+.+.+.+. .||+..|.+.++..++..+..+...+|+
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999988 4999999988887777666666555554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.79  E-value=2.5e-18  Score=131.90  Aligned_cols=190  Identities=20%  Similarity=0.186  Sum_probs=152.9

Q ss_pred             cchhhhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHH
Q 026854           17 SSFFTLFSR--KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLIL   94 (232)
Q Consensus        17 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (232)
                      .+.++.+.+  ...|.+|.+.+.++...+..|++..|.|.|+.+..          |++..++.+..+.+-++.++|+++
T Consensus       238 ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k----------~~s~~~a~~a~~lfE~agl~G~Ll  307 (448)
T COG2271         238 LTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVK----------GFSLVKANWAISLFEVAGLPGTLL  307 (448)
T ss_pred             ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----------CCCHHHHHHHHHHHHHHhhHHHHH
Confidence            344554432  23467888888999999999999999999997765          699999999999999999999999


Q ss_pred             HHHHHhhh--chHHHHHHHH-HHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHH
Q 026854           95 SAIIVDKI--GRKLSMVLMF-VLACIFLLPLVFHQ--SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVA  169 (232)
Q Consensus        95 ~g~l~dr~--grr~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  169 (232)
                      +||++||+  |||..+.+.+ +...++.......+  |.....++.+..|+...+..-+.-....|..|++.-|++.|+.
T Consensus       308 ~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~  387 (448)
T COG2271         308 AGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFV  387 (448)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchh
Confidence            99999996  6776554444 44444444444443  4477778888889888888888888899999999999999999


Q ss_pred             HHhhhh-hhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccc
Q 026854          170 SAVGRV-GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  216 (232)
Q Consensus       170 ~~~~~~-g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  216 (232)
                      ..++.+ |+..+....+++.|.+||...|.+..+.++++.+.......
T Consensus       388 Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         388 GLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             hhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            999998 89999999999999999999999888888777666555543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.79  E-value=2.9e-17  Score=130.10  Aligned_cols=154  Identities=13%  Similarity=-0.022  Sum_probs=135.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL  106 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  106 (232)
                      +.+.++.+++..+...........+.|.+.++.+           .+..+.++..+...++..+++++.|+++||+|||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----------~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~   72 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEH-----------LPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR   72 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4456667777777777777778888999998776           88899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHH
Q 026854          107 SMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVG  186 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  186 (232)
                      .+..+..+..++.....+.++.+.+.+.+++.|++.+...+.......+..|+++|++++++.+...++|..++|.+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633         73 SYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998888888888888889999999999888888777777888899999999999999999999999999998


Q ss_pred             Hhhcc
Q 026854          187 LVTSC  191 (232)
Q Consensus       187 l~~~~  191 (232)
                      +.+..
T Consensus       153 l~~~~  157 (381)
T PRK03633        153 VSTEL  157 (381)
T ss_pred             ccccc
Confidence            87653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.79  E-value=4.1e-17  Score=130.05  Aligned_cols=179  Identities=13%  Similarity=0.087  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSS-GDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL  106 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  106 (232)
                      +|.++...+..+......+......+.+.+ +++           .+.++.++..++..++..+..++.|++.||+|.|+
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~-----------ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~  101 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFN-----------FTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRR  101 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence            455666666666666666666666666654 444           89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhH
Q 026854          107 SMVLMFVLACIFLLPLVFH-----QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCP  181 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~  181 (232)
                      ++.++.++..+..+...+.     ++++.+++.+++.|++ +..++.....+++++|+++||++.|+....+++|..+++
T Consensus       102 v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        102 WTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence            9999999988888887765     6888899999999987 667888999999999999999999999877788887776


Q ss_pred             HHHHHHh-----h-------------ccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          182 LVAVGLV-----T-------------SCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       182 ~i~~~l~-----~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      .+.+.+.     +             ..+++...+++..+.++..+..+++.++.
T Consensus       181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            6665543     2             22366666777777777776666665554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.78  E-value=1.1e-17  Score=133.77  Aligned_cols=149  Identities=9%  Similarity=0.111  Sum_probs=121.8

Q ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhhhhhhh
Q 026854           74 DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQ----SAVVTTVLLFGVRMCATGTITVA  149 (232)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~  149 (232)
                      .+..+...++..+..+++.++.|+++||+|||+++..+.++..+.........    +.+...+..++.+++.+...+..
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~  329 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG  329 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35668888888899999999999999999999999999998888766555522    22345556777888777777888


Q ss_pred             hhccccccccchhhhhhHHHH-HhhhhhhchhHHHHHHHhhcc------chhHHHHHHHHHHHHHHHHHhcccccccCCC
Q 026854          150 TIYAPEIYPTSARTTGAGVAS-AVGRVGGMVCPLVAVGLVTSC------HLRLAVILFEVVFVLAIASSLLFPFETKGRE  222 (232)
Q Consensus       150 ~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  222 (232)
                      ..+++|.+|++.|+++.|+.+ ....+|..++|.+.|++.++.      ||+..+.+.+++.+++.+..+++.||+++.-
T Consensus       330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            889999999999999999997 567899999999999999974      5788888888888888888888888876543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.78  E-value=3.5e-17  Score=131.40  Aligned_cols=190  Identities=15%  Similarity=0.168  Sum_probs=123.8

Q ss_pred             hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHH
Q 026854           19 FFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAII   98 (232)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l   98 (232)
                      ++++++++..+.........+......+....+.|.+.++.+           .+..+.+...+...++.+++.++.|++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~~~~~~~~~~~~~~~~g~~~~g~l  289 (426)
T PRK12307        221 MKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEG-----------FDTGVVSNLMTAAAFGTVLGNIVWGLC  289 (426)
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344454333333333333333333344455667888886655           777777888888889999999999999


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhh
Q 026854           99 VDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVR--MCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVG  176 (232)
Q Consensus        99 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  176 (232)
                      .||+|||+.+..+..+..+..+.....++........++.+  ....+..+..+.++.|.+|++.|+++.|+.+...+++
T Consensus       290 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~  369 (426)
T PRK12307        290 ADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATS  369 (426)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHH
Confidence            99999999988888776665554443222111112222222  2222334566678899999999999999999999999


Q ss_pred             hchhHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHhccccccc
Q 026854          177 GMVCPLVAVGLVTSCHLRLAVIL-FEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       177 ~~~~~~i~~~l~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +.++|.+.+++.+..|.....++ ....+........+..||+.
T Consensus       370 ~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (426)
T PRK12307        370 GTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRL  413 (426)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChhh
Confidence            99999999999998886544333 33333333333334445553

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.78  E-value=1.8e-17  Score=131.74  Aligned_cols=150  Identities=10%  Similarity=-0.023  Sum_probs=133.2

Q ss_pred             HHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh
Q 026854           46 YGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH  125 (232)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  125 (232)
                      +......|.+.++++           .+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+...+.
T Consensus        26 ~~~~~~lp~i~~~~~-----------~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a   94 (393)
T PRK09705         26 TSVGPLLPQLRQASG-----------MSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY   94 (393)
T ss_pred             hccchhHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC
Confidence            556677888887776           899999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc-chhHHHHHHHHHH
Q 026854          126 QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC-HLRLAVILFEVVF  204 (232)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-g~~~~~~~~~~~~  204 (232)
                      ++.+.+++.+++.|++.+...+....++.|.+| ++|+.++++.......|..+++.+.+++.++. +|+..+.+.++..
T Consensus        95 ~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~  173 (393)
T PRK09705         95 PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPA  173 (393)
T ss_pred             cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999999999999888888888999997 77999999999999999999999999988875 7887776655554


Q ss_pred             HHH
Q 026854          205 VLA  207 (232)
Q Consensus       205 ~~~  207 (232)
                      ++.
T Consensus       174 ~~~  176 (393)
T PRK09705        174 VVA  176 (393)
T ss_pred             HHH
Confidence            433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.78  E-value=2.1e-17  Score=133.01  Aligned_cols=164  Identities=13%  Similarity=0.122  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhH-HHHH-----HHHhhhhhHHHHHHHHHhh
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLY-VDVF-----ITSFAELPGLILSAIIVDK  101 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~g~l~dr  101 (232)
                      ++.....++.++........+....|.+.++++           .++.+.+ +..+     ...+...+++++.|+++||
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr   82 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFF-----------PAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR   82 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence            344556666777788888888888998887765           4444322 2221     1233345788999999999


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhh
Q 026854          102 IGRKLSMVLMFVLACIFLLPLVFHQSAV--------VTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVG  173 (232)
Q Consensus       102 ~grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  173 (232)
                      +|||+.++.+..+..++.....+.++.+        .+.+.+++.|++.+...+....+++|++|+++|+++.++.....
T Consensus        83 ~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~  162 (434)
T PRK15075         83 VGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQ  162 (434)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHH
Confidence            9999999999999999998888876654        35778899999988888888899999999999999999999888


Q ss_pred             hhhhchhHHHHHHHh--------hccchhHHHHHHHH
Q 026854          174 RVGGMVCPLVAVGLV--------TSCHLRLAVILFEV  202 (232)
Q Consensus       174 ~~g~~~~~~i~~~l~--------~~~g~~~~~~~~~~  202 (232)
                      ++|..+++.+++.+.        +..||+..|++...
T Consensus       163 ~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        163 QVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            888888877776652        46789988876443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.77  E-value=1.5e-17  Score=129.78  Aligned_cols=167  Identities=20%  Similarity=0.182  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHH
Q 026854           34 LWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFV  113 (232)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  113 (232)
                      .....+......+......|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+.+..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~   72 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLG-----------LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLL   72 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHH
Confidence            344556666777777778888887665           788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccch
Q 026854          114 LACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHL  193 (232)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~  193 (232)
                      +..++.+.....++.+...+.+++.|++.+...+...++..|.+|+++|++..++.+....+|..++|.+.+.+.+..+|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  152 (352)
T cd06174          73 LFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGW  152 (352)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            99999998888888888899999999999888999999999999999999999999999999999999999999998889


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 026854          194 RLAVILFEVVFVLAIASS  211 (232)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~  211 (232)
                      +..+.+.+....+..+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174         153 RWLFLILAILGLLLALLL  170 (352)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888777666655444

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.77  E-value=3.1e-17  Score=133.83  Aligned_cols=170  Identities=12%  Similarity=0.052  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh-hchHH
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK-IGRKL  106 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~  106 (232)
                      .+.++.+++..++..+.+|....+.+.+.++..          |.+..+................+++|+++|| +|||+
T Consensus        20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l----------g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~   89 (500)
T PRK09584         20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVKQL----------GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR   89 (500)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            355777778888888999999999998884322          3777777776666555555556789999999 59999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccch--hhhhhHHHHHhhhhhhchhHHH
Q 026854          107 SMVLMFVLACIFLLPLVFHQ-SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSA--RTTGAGVASAVGRVGGMVCPLV  183 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~i  183 (232)
                      .+..+..+..++...+.+.+ +...+.+.+.+.+++.+...+...++++|++|++.  |..+.++.+...++|+.++|.+
T Consensus        90 ~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i  169 (500)
T PRK09584         90 VIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA  169 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence            99999999998877777653 34445566677888888778888899999998653  4567888899999999999999


Q ss_pred             HHHHhhccchhHHHHHHHHHHHHH
Q 026854          184 AVGLVTSCHLRLAVILFEVVFVLA  207 (232)
Q Consensus       184 ~~~l~~~~g~~~~~~~~~~~~~~~  207 (232)
                      .+++.+..||+..|.+.++...++
T Consensus       170 ~g~l~~~~g~~~~F~i~~i~~~i~  193 (500)
T PRK09584        170 TPWLAAKYGWSVAFALSVVGMLIT  193 (500)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHH
Confidence            999999999999998876544443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.77  E-value=8.8e-18  Score=134.55  Aligned_cols=169  Identities=13%  Similarity=0.073  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 026854           38 FFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACI  117 (232)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  117 (232)
                      .+...+.........|.+.++.+           .+..+.++..+...++..+++++.|+++||+|||+++..+..+.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~   94 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQIQMMT-----------GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGL   94 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----------CCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHH
Confidence            33444444455556677765554           6778899999999999999999999999999999998888777666


Q ss_pred             HHHHHHh-----hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc
Q 026854          118 FLLPLVF-----HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH  192 (232)
Q Consensus       118 ~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g  192 (232)
                      +......     .++.+.+.+.+++.|++.+...+...+++.|..|+++|+++.++.+....+|..++|.+++.+.+..+
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~  174 (417)
T PRK10489         95 GFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG  174 (417)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh
Confidence            5554432     34566677778888888777778888899999999999999999999999999999999999999888


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          193 LRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      |++.+.+.++..++..+... ..||+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~-~l~~~  199 (417)
T PRK10489        175 VAWNYGLAAAGTFITLLPLL-RLPAL  199 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence            88888776666655554443 34554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.77  E-value=2.3e-17  Score=133.39  Aligned_cols=158  Identities=13%  Similarity=0.034  Sum_probs=130.2

Q ss_pred             HHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh
Q 026854           46 YGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH  125 (232)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  125 (232)
                      +....+.|.+.++.+           .+..+.++..+...+...++.++.|+++||+|||++++.+..+..++.+...+.
T Consensus        36 ~~~~~~~~~i~~~~g-----------~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~  104 (455)
T TIGR00892        36 KAVTVFFKELQQIFQ-----------ATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS  104 (455)
T ss_pred             cchhhhHHHHHHHhC-----------cchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh
Confidence            455667788877766           888888999888888889999999999999999999999998888888887777


Q ss_pred             hhHHHHHHH-HHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHH
Q 026854          126 QSAVVTTVL-LFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVF  204 (232)
Q Consensus       126 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~  204 (232)
                      ++.+.+++. +++.|++.+...+.....+.|++| ++|+++.++.+....+|..++|.+.+.+.+..||+..|++.+++.
T Consensus       105 ~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~  183 (455)
T TIGR00892       105 SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLL  183 (455)
T ss_pred             hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            777766543 467777777655666777889886 789999999999999999999999999999999999999988877


Q ss_pred             HHHHHHHhccc
Q 026854          205 VLAIASSLLFP  215 (232)
Q Consensus       205 ~~~~~~~~~~~  215 (232)
                      ++..+..++..
T Consensus       184 ~~~~v~~~~~~  194 (455)
T TIGR00892       184 LHCCVCGALMR  194 (455)
T ss_pred             HHHHHHHHHhC
Confidence            66555444443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.77  E-value=6.1e-17  Score=128.72  Aligned_cols=181  Identities=10%  Similarity=0.041  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH
Q 026854           30 TTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV  109 (232)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  109 (232)
                      +.+...+..+.....++....|.|.+.++.+           .+..+.+...+...++.+++.++.|++.||+|||+.+.
T Consensus       206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g-----------~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~  274 (393)
T PRK09705        206 RAWTLGVYFGLINGGYASLIAWLPAFYIEIG-----------ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLM  274 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence            3444444555556677788888999987655           78888889999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccc-cchhhhhhHHHHHhhhhhhchhHHHHHHH
Q 026854          110 LMFVLACIFLLPLVF-HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYP-TSARTTGAGVASAVGRVGGMVCPLVAVGL  187 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  187 (232)
                      .+..+..++...+.. .++....  ..++.+++.+...+.......+..+ ++.|++..|+.+..+.+++.++|.+.|++
T Consensus       275 ~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l  352 (393)
T PRK09705        275 LALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL  352 (393)
T ss_pred             HHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777666554443 2222222  2334566666666766666667664 67899999999999999999999999999


Q ss_pred             hhccc-hhHHHHHHHHHHHHHHHHHhcccccccCCCc
Q 026854          188 VTSCH-LRLAVILFEVVFVLAIASSLLFPFETKGREL  223 (232)
Q Consensus       188 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  223 (232)
                      .|..| +...+.+..++.++..+....+.||++++..
T Consensus       353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        353 RSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            99987 4555556666666666666777788876654

>PRK09952 shikimate transporter; Provisional

Probab=99.77  E-value=1.4e-16  Score=128.28  Aligned_cols=178  Identities=15%  Similarity=0.178  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVL  110 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  110 (232)
                      ........++.....|....|.|.+.++..          +.+...........++...++.++.|+++||+|||+.+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~----------g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~  321 (438)
T PRK09952        252 FLKIIALRLCELLTMYIVTAFALNYSTQNL----------GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYIT  321 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            333334455566677777788888874322          2555544445555667778889999999999999999888


Q ss_pred             HHHHHHHHHHHHHh---h-hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhh-hhhchhHHHHH
Q 026854          111 MFVLACIFLLPLVF---H-QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR-VGGMVCPLVAV  185 (232)
Q Consensus       111 ~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~g~~~~~~i~~  185 (232)
                      +..+..++.+....   . ++........++.+++.+...+..+++.+|.+|++.|+++.++.+..+. +++.++|.+.+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g  401 (438)
T PRK09952        322 GALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAA  401 (438)
T ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            77666554433322   1 1233333344555666667778888999999999999999999877765 89999999999


Q ss_pred             HHhhccc--hhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          186 GLVTSCH--LRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       186 ~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ++.+..+  |...+.+.+++.+++.+..+ ..+|++
T Consensus       402 ~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~~  436 (438)
T PRK09952        402 ALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKDNQ  436 (438)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hccccc
Confidence            9988553  55556555556565555544 346644

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.77  E-value=4.2e-17  Score=128.72  Aligned_cols=173  Identities=16%  Similarity=0.058  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-CCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH-HHHH
Q 026854           37 LFFANAFSYYGAVLLTSKLSS-GDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVL-MFVL  114 (232)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~  114 (232)
                      .++...+........+|.+.+ +.+           .+..+.++..+...+...+.+++.|+++||+|||+.++. +...
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g-----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~   73 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVR-----------ARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLL   73 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            345555555566666776653 444           888999999999999999999999999999998887654 5555


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhh--hHHHHHhhhhhhchhHHHHHHHhhccc
Q 026854          115 ACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTG--AGVASAVGRVGGMVCPLVAVGLVTSCH  192 (232)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~~g~~~~~~i~~~l~~~~g  192 (232)
                      ..++.......++.+.+++.+++.+.+.+...+....+..|..|++.|+.+  .+......++|..++|.+.+.+.+..+
T Consensus        74 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~  153 (375)
T TIGR00899        74 AALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG  153 (375)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc
Confidence            555666666677777777777777766666777778888898888777754  577777788999999999999999899


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          193 LRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      |+..+++.+.+.++..+..+++.||.++
T Consensus       154 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       154 FTVMFLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            9999999888777776666665676543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.77  E-value=5e-17  Score=130.80  Aligned_cols=183  Identities=12%  Similarity=0.034  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh--ch-H
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI--GR-K  105 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--gr-r  105 (232)
                      +.++...+..+.....++....|.|.+.++..          +.+..+.+...+...++..++.++.|+++||+  ++ |
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~  312 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETL----------GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRG  312 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcc
Confidence            34555555555566666777788999984432          37888888888899999999999999999999  33 3


Q ss_pred             HHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHH
Q 026854          106 LSMVLMFVLACIFLLPLV--FHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLV  183 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  183 (232)
                      ...........+......  ...+........+..|++..+.........+|.+|++.|+++.|+.+...++|+.++|.+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~  392 (434)
T PRK11663        313 PMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYP  392 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhccc
Confidence            322222222121111111  122222222333333433333333445567899999999999999999999999999999


Q ss_pred             HHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCC
Q 026854          184 AVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGR  221 (232)
Q Consensus       184 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  221 (232)
                      .|++.++.|+...+...+++.++..+..+...++++++
T Consensus       393 ~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        393 LAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            99999999999999888888877776666555444433

>PRK09952 shikimate transporter; Provisional

Probab=99.76  E-value=1.1e-16  Score=128.90  Aligned_cols=181  Identities=12%  Similarity=-0.015  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccccCCCCchhhHHHH-----HHHHhhhhhHHHHHHHHHhh
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSS-GDSKCGSKVLHADKSKDNSLYVDV-----FITSFAELPGLILSAIIVDK  101 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~dr  101 (232)
                      ++......+.++...+....+....|.+.. +...         +.++.. ++..     ....++..+++++.|+++||
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr   90 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFP---------QVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDR   90 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence            344445555556555555555555554332 2210         133332 3222     34456678899999999999


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhh
Q 026854          102 IGRKLSMVLMFVLACIFLLPLVFHQSAV--------VTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVG  173 (232)
Q Consensus       102 ~grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  173 (232)
                      +|||+.+..+..+.+++.++..+.++..        .+.+.+++.|++.++..+....++.|++|+++|+...+......
T Consensus        91 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~  170 (438)
T PRK09952         91 LGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGY  170 (438)
T ss_pred             hccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence            9999999999999999999988877754        47788999999999999998999999999999999999888888


Q ss_pred             hhhhchhHHHHHHHhh--------ccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          174 RVGGMVCPLVAVGLVT--------SCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       174 ~~g~~~~~~i~~~l~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      .+|..+++.+...+..        ..||+..|++.++..++. +......||++
T Consensus       171 ~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~  223 (438)
T PRK09952        171 GVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESA  223 (438)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence            8888888777666542        468998888766654443 33334456654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.76  E-value=4.2e-17  Score=128.49  Aligned_cols=160  Identities=21%  Similarity=0.231  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 026854           38 FFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACI  117 (232)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  117 (232)
                      .+...........+.+.+.++.+           .+..+.+.......++..++.++.|+++||+|||+.+.++..+..+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~  282 (377)
T TIGR00890       214 FFLNAVSGLLLIGLYKPYGQSLG-----------LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAV  282 (377)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            33333333334444555655544           6667778888889999999999999999999999999988888888


Q ss_pred             HHHHHHhhhh--HHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhH
Q 026854          118 FLLPLVFHQS--AVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRL  195 (232)
Q Consensus       118 ~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~  195 (232)
                      +...+...++  ........++.+++.+...+....+.+|.+|+++|+++.|+.+....+|+.++|.+.|.+.+..|++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~  362 (377)
T TIGR00890       283 GMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEY  362 (377)
T ss_pred             HHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence            7776665443  22233445566666766677778889999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHH
Q 026854          196 AVILFEVVFVLAI  208 (232)
Q Consensus       196 ~~~~~~~~~~~~~  208 (232)
                      .+.+.+++.+++.
T Consensus       363 ~f~~~~~~~~~~~  375 (377)
T TIGR00890       363 TFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHhc
Confidence            8887776666543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.76  E-value=1.3e-16  Score=127.34  Aligned_cols=177  Identities=15%  Similarity=0.037  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH
Q 026854           30 TTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV  109 (232)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  109 (232)
                      .++.+...++...+.........|.+.++.+           .+..+.++..+...++..+++++.|++.||+|||+.+.
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~-----------~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~   72 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAFT-----------LTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGIL   72 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            3445555666666666666677888877766           88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHH
Q 026854          110 LMFVLACIFLLPLVF---HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVG  186 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  186 (232)
                      .+..+.+++......   .++.+.+.+.+++.|++.+...+....++.+..|++.|++..++.+...++|..++|.+.+.
T Consensus        73 ~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~  152 (410)
T TIGR00885        73 LGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQ  152 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888877544   34677788888999999999999999999999999999999999999999999999999987


Q ss_pred             Hhhc--------------------------cchhHHHHHHHHHHHHHHHHHh-ccccc
Q 026854          187 LVTS--------------------------CHLRLAVILFEVVFVLAIASSL-LFPFE  217 (232)
Q Consensus       187 l~~~--------------------------~g~~~~~~~~~~~~~~~~~~~~-~~~~e  217 (232)
                      +...                          .+|+.+|.+.+++.++..+... ...||
T Consensus       153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~  210 (410)
T TIGR00885       153 LILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPA  210 (410)
T ss_pred             HHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            7532                          3588888877776665544432 22454

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.76  E-value=1.1e-16  Score=128.97  Aligned_cols=150  Identities=15%  Similarity=0.189  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHH
Q 026854           35 WVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVL  114 (232)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~  114 (232)
                      ....+.....++....|.|.+.++..          +.+..+.++......++.+++.++.|+++||+|||+.++.+..+
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~  313 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVL----------HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVL  313 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            34444455667778888999886532          27777777888888899999999999999999999988776554


Q ss_pred             HHHHHHH-HH-h--hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhh-hhchhHHHHHHHhh
Q 026854          115 ACIFLLP-LV-F--HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRV-GGMVCPLVAVGLVT  189 (232)
Q Consensus       115 ~~~~~~~-~~-~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~  189 (232)
                      ..+.... .. .  .++........++.+++.+...+..+.+.+|.+|++.|+++.++.+..+.. ++.++|.+.+++.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        314 AILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4332221 11 1  122222333334445555566666778889999999999999998777664 58889999999999


Q ss_pred             ccchh
Q 026854          190 SCHLR  194 (232)
Q Consensus       190 ~~g~~  194 (232)
                      ..|+.
T Consensus       394 ~~g~~  398 (434)
T PRK15075        394 VTGDK  398 (434)
T ss_pred             hcCCc
Confidence            88853

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.75  E-value=2.8e-16  Score=126.42  Aligned_cols=183  Identities=21%  Similarity=0.246  Sum_probs=113.3

Q ss_pred             chhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHH
Q 026854           18 SFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAI   97 (232)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (232)
                      ++++++++  ++..+......+.....+|....|.|.+.++..          +.+..+.+....+..++..++.++.|+
T Consensus       234 ~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~----------g~s~~~~~~~~~i~~~~~~i~~~~~G~  301 (432)
T PRK10406        234 SLKGLWRN--RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTA----------GMHANVASGIMTAALFVFMLIQPLIGA  301 (432)
T ss_pred             cHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666532  222222222233446677888889999885432          367777777777777888888999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhh
Q 026854           98 IVDKIGRKLSMVLMFVLACIFLLPLVF----HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVG  173 (232)
Q Consensus        98 l~dr~grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  173 (232)
                      ++||+|||+.+.+...+..+.......    .++.........+..+..+...+..+.+.+|.+|++.|+++.|+.+..+
T Consensus       302 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g  381 (432)
T PRK10406        302 LSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVA  381 (432)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHH
Confidence            999999999887766654443332221    1122222222222223333344567788999999999999999999887


Q ss_pred             hh-hhchhHHHHHHHhhccchhH-HHHHHHHHHHHHHHHHhc
Q 026854          174 RV-GGMVCPLVAVGLVTSCHLRL-AVILFEVVFVLAIASSLL  213 (232)
Q Consensus       174 ~~-g~~~~~~i~~~l~~~~g~~~-~~~~~~~~~~~~~~~~~~  213 (232)
                      ++ ++...|.+.+.+ +..|++. .+++.++..+++.+..++
T Consensus       382 ~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        382 NALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            74 355578888855 5556443 344444444555444443

>PRK10133 L-fucose transporter; Provisional

Probab=99.75  E-value=2.6e-16  Score=126.65  Aligned_cols=153  Identities=16%  Similarity=0.099  Sum_probs=131.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR  104 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  104 (232)
                      +.+...+....+.++...+.........|.+.++++           .+..+.++..+...++..+++++.|+++||+||
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~-----------~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~   90 (438)
T PRK10133         22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFT-----------LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY   90 (438)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            335556666777777777888888888999877766           889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhH
Q 026854          105 KLSMVLMFVLACIFLLPL---VFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCP  181 (232)
Q Consensus       105 r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~  181 (232)
                      |+++..+..+..++.++.   ...++.+.+.+.+++.|++.+...+....++.|..|+++|...+++.+....+|..++|
T Consensus        91 r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~  170 (438)
T PRK10133         91 KAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAV  170 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988765   34678888889999999999999999899888987777777789999999999999999


Q ss_pred             HHHHHHh
Q 026854          182 LVAVGLV  188 (232)
Q Consensus       182 ~i~~~l~  188 (232)
                      .+++.+.
T Consensus       171 ~~g~~l~  177 (438)
T PRK10133        171 VFGQSLI  177 (438)
T ss_pred             HHHHHHH
Confidence            9887654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.75  E-value=2.3e-16  Score=125.63  Aligned_cols=166  Identities=10%  Similarity=0.057  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 026854           42 AFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLP  121 (232)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  121 (232)
                      ...+.....+.|.+..+.+           .  .+.+.......++.+++.++.|++.||+|||+.+..+..+..++...
T Consensus       229 ~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~  295 (399)
T PRK05122        229 SIGFGTIATFITLYYAARG-----------W--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLL  295 (399)
T ss_pred             HHHHHHHHHHHHHHHHHcc-----------c--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3344455566677665433           3  23345556677888899999999999999999998888888877777


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHH
Q 026854          122 LVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFE  201 (232)
Q Consensus       122 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~  201 (232)
                      ....++.+...+..++.|++.+...+.......|..|++.|+++.|+.+....+|..++|.+.|++.+..|++..+.+.+
T Consensus       296 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  375 (399)
T PRK05122        296 LWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA  375 (399)
T ss_pred             HHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            76666766666777788888877777777778899999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHhcccccccCC
Q 026854          202 VVFVLAIASSLLFPFETKGR  221 (232)
Q Consensus       202 ~~~~~~~~~~~~~~~e~~~~  221 (232)
                      ++.+++.+..++. ++++++
T Consensus       376 ~~~~~~~~~~~~~-~~~~~~  394 (399)
T PRK05122        376 LAALLGLALTWLL-YRRAPR  394 (399)
T ss_pred             HHHHHHHHHHHHh-cccccc
Confidence            8777776666554 444333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.75  E-value=2.3e-16  Score=125.40  Aligned_cols=163  Identities=10%  Similarity=0.105  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 026854           43 FSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPL  122 (232)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  122 (232)
                      ..++....+.|.+.++..          +.+..+.+.......++.+++.++.|+++||+|||+.+..+.....+.....
T Consensus       230 ~~~~~~~~~~p~~l~~~~----------~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~  299 (393)
T PRK15011        230 GTNSLYIINMPLFIINEL----------HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM  299 (393)
T ss_pred             HHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            344445567887774432          3777777777777777888899999999999999998877666555544444


Q ss_pred             HhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHH
Q 026854          123 VFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEV  202 (232)
Q Consensus       123 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~  202 (232)
                      ...++.+...+.+++.++..+...+....+..|.+|++ |+++.++.+...++|..++|.+.|.+.+..|++..+.+..+
T Consensus       300 ~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~  378 (393)
T PRK15011        300 LMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALV  378 (393)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            44555555555666666666555566667788999864 89999999999999999999999999998899888877777


Q ss_pred             HHHHHHHHHhccccc
Q 026854          203 VFVLAIASSLLFPFE  217 (232)
Q Consensus       203 ~~~~~~~~~~~~~~e  217 (232)
                      ..+++.+..++. ||
T Consensus       379 ~~~~~~~~~~~~-~~  392 (393)
T PRK15011        379 MIIATLFCLLRI-KD  392 (393)
T ss_pred             HHHHHHHHHHhh-cC
Confidence            766666555543 54

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.75  E-value=4.7e-16  Score=122.64  Aligned_cols=155  Identities=14%  Similarity=0.115  Sum_probs=131.4

Q ss_pred             HHHHHHHHhhcCCCCCCccccccCCCCchh-hHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh
Q 026854           47 GAVLLTSKLSSGDSKCGSKVLHADKSKDNS-LYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH  125 (232)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  125 (232)
                      ......|.+.++.+           .+..+ .+........+..++.++.|+++||+|.|+++.++.+...+...+..+.
T Consensus        44 n~s~a~p~L~~elg-----------lT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa  112 (511)
T TIGR00806        44 GESFITPYLLTVLN-----------FTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG  112 (511)
T ss_pred             hHHHHHHHHHHHcC-----------CCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            34445676666655           88888 9999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHH---HHH
Q 026854          126 QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVIL---FEV  202 (232)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~---~~~  202 (232)
                      ++...+.+.+++.|++.++.. ....++..++|+++|+++.|+.+....+|.++++.+.++ ...+||+....+   ...
T Consensus       113 ~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~  190 (511)
T TIGR00806       113 TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLV  190 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHH
Confidence            999999999999999999988 999999999999999999999999999999999999999 556788754433   233


Q ss_pred             HHHHHHHHHhcc
Q 026854          203 VFVLAIASSLLF  214 (232)
Q Consensus       203 ~~~~~~~~~~~~  214 (232)
                      ...++.++.+++
T Consensus       191 s~~~a~~~a~~L  202 (511)
T TIGR00806       191 FMTFSVFLALFL  202 (511)
T ss_pred             HHHHHHHHHHhC
Confidence            333444444444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.75  E-value=7.9e-17  Score=129.17  Aligned_cols=146  Identities=12%  Similarity=0.070  Sum_probs=120.6

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      .+..+.+...++..++..++.++.|++.||+|||+.+..+..+..+......+.++.+.+.....+.++..+...+....
T Consensus       259 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  338 (420)
T PRK09528        259 QGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFK  338 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556678888888889999999999999999999999888888888777777777777777777777777666677778


Q ss_pred             ccccccccchhhhhhHH-HHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccccc
Q 026854          152 YAPEIYPTSARTTGAGV-ASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  217 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  217 (232)
                      ++.|.+|++.|++..+. .+....+|..++|.+.|++.|..|++..+...+++.++..++.++..++
T Consensus       339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            89999999999988766 5667789999999999999999999999998888877766666655444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.74  E-value=2e-16  Score=127.92  Aligned_cols=176  Identities=16%  Similarity=0.192  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh--chHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI--GRKL  106 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~  106 (232)
                      +.++...+..++.....+....|.|.+.++..          +.+..+.+.......++.+++.++.|+++||+  |||+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~----------g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~  322 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  322 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            44555556666666666778889999997643          37777778888888899999999999999999  5554


Q ss_pred             HH-HHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhch-hHH
Q 026854          107 SM-VLMFVLACIFLLPLVF--HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMV-CPL  182 (232)
Q Consensus       107 ~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~-~~~  182 (232)
                      .. .....+..++......  ..+.....+..+..+.+..+.......+..|.+|++.||++.|+.+...++|+.+ +|.
T Consensus       323 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~  402 (452)
T PRK11273        323 ATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  402 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhh
Confidence            32 2222222222222222  2233333333444444333333334456779999999999999999998888655 799


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          183 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       183 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      +.|++.|+.|++..|.+.++.++++.+....+
T Consensus       403 v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        403 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             hHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999989988888777776655544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.74  E-value=7.7e-17  Score=109.36  Aligned_cols=136  Identities=18%  Similarity=0.204  Sum_probs=119.3

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchh
Q 026854           83 ITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSAR  162 (232)
Q Consensus        83 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r  162 (232)
                      ...++..++.++.|++.||+|||+.+..+.....++.+.....++.+...+..++.+++.+...+....+..|.+|+++|
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER   85 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence            34567888999999999999999999999888888888777777888888888899988888889999999999999999


Q ss_pred             hhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          163 TTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       163 ~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      +++.++.+....++..++|.+.+.+.+..+|+..+.+.+....+..+..++..||+
T Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999999999999988998888888888777777777666654

>PRK03699 putative transporter; Provisional

Probab=99.74  E-value=1.2e-16  Score=127.07  Aligned_cols=176  Identities=11%  Similarity=0.086  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS  107 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  107 (232)
                      .+.++...+..++.....+....|.|.+.++..          +.+..+.+...+...++..++.++.|+++||++||+.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  273 (394)
T PRK03699        204 GIGVLFLAIAALLYILAQLTFISWVPEYAQKKF----------GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI  273 (394)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence            344555555566666667788889999985432          3788888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHH
Q 026854          108 MVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGL  187 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  187 (232)
                      +.....+..+........++.....+..++.|++.+..++...++..|..|.+ +++..+.......+|+.++|.+.|++
T Consensus       274 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l  352 (394)
T PRK03699        274 LTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPI  352 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            88877776666555555555555556667777777777777777777877644 67778888888999999999999999


Q ss_pred             hhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          188 VTSCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       188 ~~~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      .+..|++..++..+++..++.+.....
T Consensus       353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        353 VAHFGLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence            999999988888777777665544433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.74  E-value=2.1e-16  Score=121.49  Aligned_cols=183  Identities=17%  Similarity=0.111  Sum_probs=151.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh
Q 026854           23 FSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI  102 (232)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  102 (232)
                      .|+..+|.++...+....+....+......+.+.++.+           .|+.|.++...+..+...+..++.|.+.||+
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~-----------LS~~q~~ll~aiPil~GallRl~~g~l~drf   76 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFG-----------LSEGQKGLLVAIPILVGALLRLPYGFLTDRF   76 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC-----------CCHHHHHHHHHHHHHHhHHHHHHHHhhhccc
Confidence            34556676777666666666666667766777766665           9999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhch
Q 026854          103 GRKLSMVLMFVLACIFLLPLVFHQS---AVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMV  179 (232)
Q Consensus       103 grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  179 (232)
                      |.|++..++.++..+-.+...+..+   .+.++++.++.|+. |+.++....++++++|++++|.++|+.. .+|+|..+
T Consensus        77 GgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av  154 (417)
T COG2223          77 GGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAV  154 (417)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHH
Confidence            9999999999999988888887433   34677777777654 4667889999999999999999999999 99999999


Q ss_pred             hHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          180 CPLVAVGLVTSCH---LRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       180 ~~~i~~~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      ..++.+.+....|   |+....++....++..+..++...+.
T Consensus       155 ~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~  196 (417)
T COG2223         155 AQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV  196 (417)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999988   88888888888888777777766443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.74  E-value=7e-16  Score=122.22  Aligned_cols=169  Identities=7%  Similarity=-0.127  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      |+++...+..+...........+.|.+.++.+           .+....+.......++.+++.++.+++.||+|+|+.+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g-----------~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l  273 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAG-----------ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLL  273 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHH
Confidence            34444444455555556666667788887765           8888888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHH-hhhhhhchhHHHHHHH
Q 026854          109 VLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASA-VGRVGGMVCPLVAVGL  187 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~~~~g~~~~~~i~~~l  187 (232)
                      .++.+...+......+.++.+.++...++.++..+...+....++.+. |+++|+++.++++. ...+|..++|.++|++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l  352 (382)
T TIGR00902       274 LISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFI  352 (382)
T ss_pred             HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888888888888899999999999999999999988 99999999999874 4579999999999999


Q ss_pred             hhccchhHHHHHHHHHHHHHHHH
Q 026854          188 VTSCHLRLAVILFEVVFVLAIAS  210 (232)
Q Consensus       188 ~~~~g~~~~~~~~~~~~~~~~~~  210 (232)
                      .|+.|. ..++..+++.+++.++
T Consensus       353 ~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       353 YPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHhccH-HHHHHHHHHHHHHHHH
Confidence            999985 5677777766655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.73  E-value=3e-16  Score=124.35  Aligned_cols=174  Identities=20%  Similarity=0.254  Sum_probs=123.5

Q ss_pred             chhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHH
Q 026854           18 SFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAI   97 (232)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (232)
                      +.++.+++ +++.++......+......+....+.|.+.++..          +.+..+.+.......++..++.++.|+
T Consensus       209 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (394)
T TIGR00883       209 PIRETLTK-HRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTL----------GLSANSALLVLMLSLILFFITIPLSGA  277 (394)
T ss_pred             CHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444432 2234555555566666677777788888884322          267777888888888999999999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHH-HHH-Hh--hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHh-
Q 026854           98 IVDKIGRKLSMVLMFVLACIFL-LPL-VF--HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAV-  172 (232)
Q Consensus        98 l~dr~grr~~~~~~~~~~~~~~-~~~-~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-  172 (232)
                      ++||+|||+.+.....+..+.. ... ..  .++.+......++.+++.+...+...++.+|.+|++.|+++.++.+.. 
T Consensus       278 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  357 (394)
T TIGR00883       278 LSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLA  357 (394)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhH
Confidence            9999999998775554444333 121 12  234445555566777777778888999999999999999999986554 


Q ss_pred             hhhhhchhHHHHHHHhhccc-hhHHHHHHHH
Q 026854          173 GRVGGMVCPLVAVGLVTSCH-LRLAVILFEV  202 (232)
Q Consensus       173 ~~~g~~~~~~i~~~l~~~~g-~~~~~~~~~~  202 (232)
                      ..+|+.++|.+.|++.++.| |+...+....
T Consensus       358 ~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       358 GAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence            46788899999999999988 5544444333

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.73  E-value=7.4e-16  Score=122.44  Aligned_cols=162  Identities=13%  Similarity=0.038  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 026854           42 AFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLP  121 (232)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  121 (232)
                      ....+....+.+.+.++..          +.+..+.+.......++.+++.++.|+++||+|||.... +..+..+....
T Consensus       218 ~~~~~~~~~~~~~~l~~~~----------g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~  286 (390)
T PRK03545        218 VTAHFTAYSYIEPFVQQVA----------GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLL  286 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHH
Confidence            3333444445555554432          377778888888889999999999999999999887544 44434443333


Q ss_pred             H-HhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHH
Q 026854          122 L-VFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILF  200 (232)
Q Consensus       122 ~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~  200 (232)
                      . ...++.+...+..++.|++.....+.....+.|..| +.|+++.|+.+....+|..+||.+.|++.++.|++..+...
T Consensus       287 l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~  365 (390)
T PRK03545        287 LLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVG  365 (390)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHH
Confidence            2 334555666666777777766666666777778776 57899999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhccc
Q 026854          201 EVVFVLAIASSLLFP  215 (232)
Q Consensus       201 ~~~~~~~~~~~~~~~  215 (232)
                      +.+.+++.+......
T Consensus       366 ~~~~~~~~~~~~~~~  380 (390)
T PRK03545        366 AALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            888888777766554

>TIGR00897 2A0118 polyol permease family

Probab=99.73  E-value=7.9e-16  Score=122.73  Aligned_cols=172  Identities=15%  Similarity=0.176  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      |.++...+..++.....+....+.|.+.++.+           .+..+.+.......++..++.++.|+++||+|||+.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----------~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~  290 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVAELG-----------FSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV  290 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            34455555666666777888889999987665           7777778888888899999999999999999988866


Q ss_pred             H-HHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHH
Q 026854          109 V-LMFVLACIFLLPLVF-----HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPL  182 (232)
Q Consensus       109 ~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~  182 (232)
                      . .+.....+....+..     .++.+...+..++.|++.+...+. .....|..| ++|+++.|+.+....+++.++|.
T Consensus       291 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~  368 (402)
T TIGR00897       291 RWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPA  368 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHH
Confidence            4 333333333222221     234444555666677666655443 445567655 58999999999999999999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHhc
Q 026854          183 VAVGLVTSCHLRLAVILFEVVFVLAIASSLL  213 (232)
Q Consensus       183 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  213 (232)
                      +.+.+.+..|+...+++.+++.+++.+...+
T Consensus       369 i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       369 IAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888887777665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.72  E-value=9.4e-16  Score=119.58  Aligned_cols=171  Identities=23%  Similarity=0.311  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH-HHHHH
Q 026854           33 LLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL-SMVLM  111 (232)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~~  111 (232)
                      ...+..+...........+.|.+.++..          +.+..+.+.......++..++.++.+++.||+|||+ .+..+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  248 (352)
T cd06174         179 LLALAFFLLSFGYYGLLTYLPLYLQEVL----------GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG  248 (352)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3333444555556666677787776542          377888899999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc
Q 026854          112 FVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC  191 (232)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  191 (232)
                      ..+..++.+.....++.+...+..++.+++.+...+....+..|..|+++|++..++.+...+++..++|.+.+.+.+..
T Consensus       249 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~  328 (352)
T cd06174         249 LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG  328 (352)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99988888888887777778888888999999999999999999999999999999999999999999999999999988


Q ss_pred             chhHHHHHHHHHHHHHHHHHhc
Q 026854          192 HLRLAVILFEVVFVLAIASSLL  213 (232)
Q Consensus       192 g~~~~~~~~~~~~~~~~~~~~~  213 (232)
                      +++..+.+.+++.+++.+..++
T Consensus       329 ~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         329 GYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             CcchHHHHHHHHHHHHHHHhee
Confidence            9998899888888877765543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PTZ00207 hypothetical protein; Provisional

Probab=99.72  E-value=1.4e-15  Score=124.55  Aligned_cols=166  Identities=13%  Similarity=0.075  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 026854           38 FFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACI  117 (232)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  117 (232)
                      ........|.+..+.|.+.++++           .+..+.++...+.. ......++.|++.||+|||+++.++.++..+
T Consensus        36 ~~~~~g~~y~fsv~s~~L~~~lg-----------ls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~i  103 (591)
T PTZ00207         36 CSICTSFMYAFNLISGAMQARYN-----------LTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCL  103 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-----------cCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            33444556788888888887766           88888887776633 3345677899999999999999999999999


Q ss_pred             HHHHHHhh------hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc
Q 026854          118 FLLPLVFH------QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC  191 (232)
Q Consensus       118 ~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  191 (232)
                      +.+...+.      .+.+.+.+.+++.|++.+...+.....+.++|| ++||++.|+......+|+.+.+.+...+.. .
T Consensus       104 G~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~  181 (591)
T PTZ00207        104 GTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D  181 (591)
T ss_pred             HHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            99888875      567788888899998888777888888899997 679999999999999999765444444433 2


Q ss_pred             chhHHHHHHHHHHHHHHHHHhccccc
Q 026854          192 HLRLAVILFEVVFVLAIASSLLFPFE  217 (232)
Q Consensus       192 g~~~~~~~~~~~~~~~~~~~~~~~~e  217 (232)
                      +++..+++.+++..+..++.+.+.++
T Consensus       182 ~~~~~fl~l~vl~~vv~ll~~~~vr~  207 (591)
T PTZ00207        182 NTSAYFFFLMSFALVVGILAIVFMRL  207 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhheeC
Confidence            56677777777777666665555433

>TIGR00898 2A0119 cation transport protein

Probab=99.72  E-value=6.1e-17  Score=132.78  Aligned_cols=142  Identities=19%  Similarity=0.161  Sum_probs=124.8

Q ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 026854           74 DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYA  153 (232)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  153 (232)
                      ..+.++..++..++.+++.++.|+++||+|||++++++.++..++.+...+.++.+.+.+.+++.|++.+...+...+++
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  205 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLN  205 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHh
Confidence            67788999999999999999999999999999999999999999998888889999999999999999999999999999


Q ss_pred             ccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          154 PEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       154 ~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      .|++|++.|+.+.++......+|.+++|.++..+.+   |+..+++.++..++..+.. ++.||+.
T Consensus       206 ~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp  267 (505)
T TIGR00898       206 TEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESP  267 (505)
T ss_pred             heecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCCh
Confidence            999999999999999988888999999888766543   8888888777766665555 4567764

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.72  E-value=5.3e-16  Score=122.84  Aligned_cols=173  Identities=12%  Similarity=0.106  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH--
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL--  106 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~--  106 (232)
                      ++++...+..+......+....+.|.+.++..          +.+..+.+.......++.+++.++.|+++||+|||+  
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  284 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQER----------GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS  284 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----------cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            44555566666667777777788888875533          367778888888899999999999999999999986  


Q ss_pred             HHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchh
Q 026854          107 SMVLMF------VLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVC  180 (232)
Q Consensus       107 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  180 (232)
                      ......      ....+........++.+.......+ +.+..+..+..+++.+|.+|++.|+++.|+.+...++|+.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~  363 (399)
T TIGR00893       285 LVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVAL-GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVG  363 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH-HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhh
Confidence            111111      1111111111112233333333333 333333678899999999999999999999999999999999


Q ss_pred             HHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHh
Q 026854          181 PLVAVGLVTSCH-LRLAVILFEVVFVLAIASSL  212 (232)
Q Consensus       181 ~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~  212 (232)
                      |.+.|++.+..| +...+.+.+++.+++.+..+
T Consensus       364 ~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       364 PIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             hHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            999999999988 88777777777666655544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.71  E-value=1.3e-15  Score=120.21  Aligned_cols=141  Identities=16%  Similarity=0.188  Sum_probs=112.8

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      .+..+.+...........++.++.|++.||+|||+.+..+.....+........++.+...+...+.+++.+...+....
T Consensus       232 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  311 (375)
T TIGR00899       232 LPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGML  311 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777777766777888899999999999999988877766655555555566666666677777777777788888


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhc
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  213 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  213 (232)
                      +..|..|++ |+++.++.+...++|..++|.+.|.+.+..|++..+.+.+++.+++.+...+
T Consensus       312 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       312 YFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            889998865 6799999999999999999999999999999998888888777776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=5.6e-17  Score=123.48  Aligned_cols=154  Identities=16%  Similarity=0.120  Sum_probs=141.8

Q ss_pred             cCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhh
Q 026854           69 ADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITV  148 (232)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (232)
                      ..+.++++.++......+.+++.+++.|.+.||+|+|..+++|..++..+.+++.+..+++..++.+.+.|++.......
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence            34466788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccccccch-hhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCC
Q 026854          149 ATIYAPEIYPTSA-RTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRE  222 (232)
Q Consensus       149 ~~~~~~e~~p~~~-r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  222 (232)
                      ..+++++.+|.+. |++++|+.-.+..+|-.++|.++|.+.+..|.+.+|.+.+.++++...+.++.++.++.++
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            9999999999865 7999999999999999999999999999999999999999999999888887776555444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.70  E-value=6.1e-17  Score=122.63  Aligned_cols=146  Identities=13%  Similarity=0.059  Sum_probs=117.6

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      .+..-.+...+.+++.++++++.+|.++||+|||.+++++....++.......+.++..+...+++.|++. +..++..+
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k-gnl~v~rA  143 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK-GNLSVIRA  143 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHH
Confidence            45566788889999999999999999999999999999999999998888888899866666699999887 45688899


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhh---ccchhHHHH---HHHHHHHHHHHHHhcccccc
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVT---SCHLRLAVI---LFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~---~~g~~~~~~---~~~~~~~~~~~~~~~~~~e~  218 (232)
                      +++|+.+++.|+.+++.......+|-++||.++|++.+   ..|....++   +..++..........++|||
T Consensus       144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999987   333322222   12222222234445567888

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.70  E-value=1.8e-17  Score=128.25  Aligned_cols=199  Identities=21%  Similarity=0.288  Sum_probs=151.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCc-hhhHHHHHHHHhhhhhHHHHHHHHHhhhchH
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKD-NSLYVDVFITSFAELPGLILSAIIVDKIGRK  105 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  105 (232)
                      +-++++..+..+|...+.+|...++...+.+..+....+...   ... ..+-....+...+.++|..+...++|++|||
T Consensus       302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk  378 (538)
T KOG0252|consen  302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY---HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK  378 (538)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH---HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH
Confidence            557788888899999999999999999998766521100000   000 0112233344556667888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhH----HH-HHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchh
Q 026854          106 LSMVLMFVLACIFLLPLVFHQSA----VV-TTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVC  180 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  180 (232)
                      ++.+-++.++.+..+.+....+.    .. .....+...++.-+.......+.+|.||++.|+++.|+....+..|++++
T Consensus       379 ~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg  458 (538)
T KOG0252|consen  379 YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVG  458 (538)
T ss_pred             HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHH
Confidence            99999999999999988875441    11 22223334445667778889999999999999999999999999999999


Q ss_pred             HHHHHHHhh-----ccchhHHHHHHHHHHHHHHHHHhcccccccCCCchhhHHh
Q 026854          181 PLVAVGLVT-----SCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDA  229 (232)
Q Consensus       181 ~~i~~~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  229 (232)
                      .....++.+     ..|.+..+++++++.+++.+..+++ |||++++++|.+.+
T Consensus       459 ~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~leei~~e  511 (538)
T KOG0252|consen  459 AFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETKGKSLEEISNE  511 (538)
T ss_pred             HHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe-ecccccCHHHhcCh
Confidence            999999999     7788899999999998888776655 79999998876443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.70  E-value=2.7e-15  Score=122.42  Aligned_cols=180  Identities=15%  Similarity=0.146  Sum_probs=139.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh---
Q 026854           26 KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI---  102 (232)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~---  102 (232)
                      ..+|+.+..+.+.+.............|.+.++.+           .+..+.+....+ ... .++.+++|+++||+   
T Consensus         9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g-----------~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr~~~~   75 (491)
T PRK11010          9 FQQPNSAILLILGFASGLPLALTSGTLQAWMTVEN-----------IDLKTIGFFSLV-GQA-YVFKFLWSPLMDRYTPP   75 (491)
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHH-HHH-HHHHHHHHHHHHccccc
Confidence            34455667777777777777777788898887766           777777765322 222 26889999999999   


Q ss_pred             --chHHH-HHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhh
Q 026854          103 --GRKLS-MVLMFVLACIFLLPLVFH---QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVG  176 (232)
Q Consensus       103 --grr~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  176 (232)
                        |||+. +..+.+..+++...+.+.   .+.+.+.+..++.+++.+...+...++..|++|+++|+++.++......+|
T Consensus        76 ~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG  155 (491)
T PRK11010         76 FLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLA  155 (491)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHH
Confidence              98875 667777776766666553   456667777788888888888889999999999999999999999999999


Q ss_pred             hchhHHHHHHHhh-ccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          177 GMVCPLVAVGLVT-SCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       177 ~~~~~~i~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ..+++.+.+++.+ ..||+..|++.++..++..+..++ .||++
T Consensus       156 ~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~  198 (491)
T PRK11010        156 MLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT  198 (491)
T ss_pred             HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence            9999999999988 469999999988777666555444 57764

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.70  E-value=5.1e-16  Score=123.97  Aligned_cols=138  Identities=12%  Similarity=0.149  Sum_probs=116.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 026854           78 YVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIY  157 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  157 (232)
                      +....+..++..++.+..|+++||+|||+.+..+.....+..+.....++.+...+..++.|++.+...+...+...+..
T Consensus       261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  340 (408)
T PRK09874        261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS  340 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence            44455567788888999999999999999999888877777766666666666777777888888888888888888999


Q ss_pred             ccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccc
Q 026854          158 PTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  215 (232)
Q Consensus       158 p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  215 (232)
                      |++.|++..++.+....+|..++|.+.|.+.+..|++..|.+.+++.+++.+..+...
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988888887777666544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.70  E-value=8.9e-16  Score=118.03  Aligned_cols=177  Identities=18%  Similarity=0.186  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS  107 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  107 (232)
                      .+++|...+.++.....+-++..++|.|.++..          +.+..+++.......+...+..+++|+++||+|.+|+
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f----------g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv  286 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF----------GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV  286 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH
Confidence            477888888999998899999999999996654          5888888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchh
Q 026854          108 MVLMFVLACIFLLPLVFH-------QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVC  180 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  180 (232)
                      +......++++.......       .+........+..+++.+..+..++.+++..+|.+ -|.+.|+....+++|++.-
T Consensus       287 ~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf~l  365 (417)
T COG2223         287 TLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFFL  365 (417)
T ss_pred             HHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-hhHHHHHHHHhccccccch
Confidence            999999998888887773       34555556666777788888888999999999774 5888999999999999999


Q ss_pred             HHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHhccc
Q 026854          181 PLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFP  215 (232)
Q Consensus       181 ~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  215 (232)
                      |...+...+.+| +...|+++..+.+++.+..+...
T Consensus       366 p~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         366 PLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             hHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998 67778888888887777655543

>PRK12382 putative transporter; Provisional

Probab=99.70  E-value=1.6e-15  Score=120.51  Aligned_cols=160  Identities=15%  Similarity=0.004  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 026854           43 FSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPL  122 (232)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  122 (232)
                      ........+.|.+.++.+           .+  +.+.......++.+++.++.|++.||+|||+.+..+..+..++....
T Consensus       230 ~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~  296 (392)
T PRK12382        230 VGFAVIGTFVSLYFASKG-----------WA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLL  296 (392)
T ss_pred             HHHhHHHHHHHHHHHhcC-----------Cc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHH
Confidence            334445556666665433           33  23445556677788999999999999999999998888888877776


Q ss_pred             HhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHH
Q 026854          123 VFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEV  202 (232)
Q Consensus       123 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~  202 (232)
                      ...++.+...+..++.+++.+...+.......|.+|+++|+++.|+.+....+|..++|.+.+++.++.|++..+.+.++
T Consensus       297 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~  376 (392)
T PRK12382        297 WLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAI  376 (392)
T ss_pred             HHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            66666666666777778777777777778889999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhccc
Q 026854          203 VFVLAIASSLLFP  215 (232)
Q Consensus       203 ~~~~~~~~~~~~~  215 (232)
                      +.+++.+..++..
T Consensus       377 ~~~~~~~~~~~~~  389 (392)
T PRK12382        377 SAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHhhc
Confidence            8877776665543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.69  E-value=4.8e-15  Score=118.90  Aligned_cols=150  Identities=14%  Similarity=0.079  Sum_probs=135.5

Q ss_pred             cCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhh
Q 026854           69 ADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH--QSAVVTTVLLFGVRMCATGTI  146 (232)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~  146 (232)
                      .++.+..+.++..+....+.+++.+..|++.||+|-|+++..+.++.++..++.-.+  .+.+.+.+.+++.|++.+..+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~  146 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF  146 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence            466888999999999999999999999999999999999999999999988877663  344577899999999999999


Q ss_pred             hhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          147 TVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       147 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      |....+.+.+.|+++|++..++......+|.+++-.+.|++.+. .||+..|++.+++..+..++.+.+..|+
T Consensus       147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~  219 (466)
T KOG2532|consen  147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDS  219 (466)
T ss_pred             hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999998 9999999999999988877766665544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.69  E-value=5e-15  Score=117.83  Aligned_cols=177  Identities=12%  Similarity=0.060  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccccCCCCchhhHHHHHHHHh-hhhhHHHHHHHHHhhhchHHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSS-GDSKCGSKVLHADKSKDNSLYVDVFITSF-AELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      .....+..+.............|.+.. +.+           .+.++.++..+...+ +...+.+.+++ .||+|||+.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~-----------~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~   84 (393)
T PRK15011         17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVH-----------ARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSL   84 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHH
Confidence            334444455555555555566666653 334           788888888765555 55555555666 9999998865


Q ss_pred             H-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhh--hhhHHHHHhhhhhhchhHHHHH
Q 026854          109 V-LMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSART--TGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       109 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~--~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      + .+.+...+......+.++.+.+.+...+.+...+...+....+..|..|++.|.  ...++.+....+|..++|.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~  164 (393)
T PRK15011         85 IVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            4 555555555555566677766555554445444566677777888877766553  3346778888999999999999


Q ss_pred             HHhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          186 GLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       186 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ++.++.||+..|+..++..++..+..++..||.+
T Consensus       165 ~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        165 ALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            9999999999998888777777766666667654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.69  E-value=6.1e-16  Score=127.35  Aligned_cols=144  Identities=18%  Similarity=0.218  Sum_probs=128.9

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      .+.....+..++..++..+|+++.|.++||+|||++++.+.++..++.+...++++.+.+.+.+++.|++.++...+.+.
T Consensus       115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~  194 (521)
T KOG0255|consen  115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFG  194 (521)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHh
Confidence            45556677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +.+|+++++.|+.+..+ ......++.+++...+++..  +|++.+++..+...+..+. +++.||++
T Consensus       195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  195 LVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             hheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            99999999999999999 88888888899999998887  7998888887777766655 55556764

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.69  E-value=2.6e-20  Score=150.57  Aligned_cols=199  Identities=25%  Similarity=0.418  Sum_probs=142.4

Q ss_pred             chhhhcchh-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHH
Q 026854           18 SFFTLFSRK-LIRTTVLLWVLFFANAF-SYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILS   95 (232)
Q Consensus        18 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (232)
                      +++++++++ +++++............ ..+....+.|.+.+..+           .+..  ........+...++.+++
T Consensus       240 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~-----------~~~~--~~~~~~~~~~~~~~~~~~  306 (451)
T PF00083_consen  240 SWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAG-----------ISNS--FLATLILGLVNFLGTLLA  306 (451)
T ss_pred             eeeeccccccccccccccccccccccccccccccccccccccccc-----------cccc--cccccccccccccccccc
Confidence            466677543 34555555444444433 33445556666665544           3333  334445567777888888


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHH--h---hhh----HHHHHHHHHHH-HHHHhhhhhhhhhccccccccchhhhh
Q 026854           96 AIIVDKIGRKLSMVLMFVLACIFLLPLV--F---HQS----AVVTTVLLFGV-RMCATGTITVATIYAPEIYPTSARTTG  165 (232)
Q Consensus        96 g~l~dr~grr~~~~~~~~~~~~~~~~~~--~---~~~----~~~~~~~~~~~-g~~~~~~~~~~~~~~~e~~p~~~r~~~  165 (232)
                      .++.||+|||++++.+..+++++.+.+.  .   ..+    .........+. ..+..+..+..+.+.+|.+|++.|+++
T Consensus       307 ~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~  386 (451)
T PF00083_consen  307 IFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTG  386 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccc
Confidence            8999999999999999988888777664  1   121    11122222222 223335667888999999999999999


Q ss_pred             hHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCCchhhHHh
Q 026854          166 AGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDA  229 (232)
Q Consensus       166 ~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  229 (232)
                      .++.+..+++++.++|.+.+.+.+..+....+.++++++.+..++.++++|||++++++|.+++
T Consensus       387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  387 IGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             cccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            9999999999999999999988888775667888888888888888999999999999998775

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.69  E-value=2.1e-15  Score=123.78  Aligned_cols=201  Identities=18%  Similarity=0.232  Sum_probs=147.5

Q ss_pred             chhhhcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHH
Q 026854           18 SFFTLFSRKLIRTTVLLWVLFFANAF-SYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSA   96 (232)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   96 (232)
                      .+++++++..+++............. +......|.+.+.+..+           .+... .....+.++..+++..++.
T Consensus       283 ~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g-----------~~~~~-~~~~~~~~~v~~~~t~~~~  350 (513)
T KOG0254|consen  283 SWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAG-----------LKSDT-FLASIILGVVNFLGTLVAT  350 (513)
T ss_pred             cHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcC-----------CCCch-HHHHHHHHHHHHHHHHHHH
Confidence            35667765566666655555554444 44555677788877666           33222 5667777888889999999


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHhhhh-------------HHHHHHHHHHHHHHHhhhhhhhhhccccccccchhh
Q 026854           97 IIVDKIGRKLSMVLMFVLACIFLLPLVFHQS-------------AVVTTVLLFGVRMCATGTITVATIYAPEIYPTSART  163 (232)
Q Consensus        97 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~  163 (232)
                      ++.||+|||+.++.+...+.++.+++.....             ........+....+..+..++.+.+.+|.+|.+.|+
T Consensus       351 ~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~  430 (513)
T KOG0254|consen  351 YLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRS  430 (513)
T ss_pred             HHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHh
Confidence            9999999999999999999998887765211             112223333344455566788899999999999999


Q ss_pred             hhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHH-HHhcccccccCCCchhhHHhh
Q 026854          164 TGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA-SSLLFPFETKGRELKDAVDAI  230 (232)
Q Consensus       164 ~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  230 (232)
                      ++.++.....++...+.......+.+..+....+..+...+.+... ..+++.|||++++.+|.++..
T Consensus       431 ~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~  498 (513)
T KOG0254|consen  431 KGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF  498 (513)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence            9999999999988887777777766665435567777777777766 788889999999999877643

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.69  E-value=5.6e-15  Score=117.05  Aligned_cols=152  Identities=15%  Similarity=0.092  Sum_probs=116.3

Q ss_pred             HHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 026854           47 GAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQ  126 (232)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  126 (232)
                      ....+.|.+.++.+           .+..+.+.......++.+++.++.|++.||+|||+.+..+.....++.....  .
T Consensus       218 ~~~~~lp~~~~~~g-----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~  284 (381)
T PRK03633        218 SLYGLMPLYLNHQG-----------MSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S  284 (381)
T ss_pred             HHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h
Confidence            34456788876655           7777888888888899999999999999999999998888777766554433  1


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHH
Q 026854          127 SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL  206 (232)
Q Consensus       127 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~  206 (232)
                      . ........+.+.+.....|...++..|..|+++++...+..+...++|+.++|.+.|++.|+.|+...|.+.+.+.++
T Consensus       285 ~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~  363 (381)
T PRK03633        285 Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFI  363 (381)
T ss_pred             h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            1 122233444555555667888888899999988888888888888999999999999999999988888887777765


Q ss_pred             HHHHHh
Q 026854          207 AIASSL  212 (232)
Q Consensus       207 ~~~~~~  212 (232)
                      ..+..+
T Consensus       364 ~~~~~~  369 (381)
T PRK03633        364 YLLMLL  369 (381)
T ss_pred             HHHHHH
Confidence            554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.69  E-value=1.5e-15  Score=124.38  Aligned_cols=147  Identities=17%  Similarity=0.278  Sum_probs=111.7

Q ss_pred             HHHHHHHHhhc-CCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh
Q 026854           47 GAVLLTSKLSS-GDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH  125 (232)
Q Consensus        47 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  125 (232)
                      ....+.|.+.+ +.+           .+..+.+...+...++.+++.++.|+++||+|||+.+..+..+..+..+.....
T Consensus       293 ~~~~~lp~~l~~~~g-----------~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  361 (496)
T PRK03893        293 PIQALLPTYLKTDLG-----------YDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI  361 (496)
T ss_pred             hHHHHHHHHHHhhcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc
Confidence            34567888884 444           788889999999999999999999999999999999888776666554443332


Q ss_pred             --hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHH
Q 026854          126 --QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVV  203 (232)
Q Consensus       126 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~  203 (232)
                        .+.+......++.+....+..+....+++|.+|++.|++++|+.+....+|+.++|.+.|.+.+..|+...+...+..
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        362 GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence              222333333333333333445667778899999999999999999999999999999999999999988777655544


Q ss_pred             H
Q 026854          204 F  204 (232)
Q Consensus       204 ~  204 (232)
                      .
T Consensus       442 ~  442 (496)
T PRK03893        442 L  442 (496)
T ss_pred             H
Confidence            4

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.68  E-value=7.2e-15  Score=117.25  Aligned_cols=171  Identities=15%  Similarity=0.090  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh-----chHH-HH
Q 026854           35 WVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI-----GRKL-SM  108 (232)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~-~~  108 (232)
                      ..+++.+...+.....-+|.++++.|           .+.++.++.......  .+..+++|+++||+     |||| .+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g-----------~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l   71 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEG-----------LDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWL   71 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHH
Confidence            34566667777777778899998887           999999988766654  68899999999999     7765 78


Q ss_pred             HHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          109 VLMFVLACIFLLPLVFH---QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      .++..+++++...+.+.   .+.+.+.+..++.+.+.....+...++++|++|+++|+++.++......+|..+++.+.+
T Consensus        72 ~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~  151 (402)
T PRK11902         72 LLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL  151 (402)
T ss_pred             HHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence            88888887777776664   334555555556667777777889999999999999999999999988999999999999


Q ss_pred             HHhhc-cchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          186 GLVTS-CHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       186 ~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ++.+. .||+..+++.++..++..+.. +..||++
T Consensus       152 ~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~  185 (402)
T PRK11902        152 WLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPE  185 (402)
T ss_pred             HHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence            98885 499999998887776655543 4456654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.68  E-value=6e-15  Score=118.98  Aligned_cols=185  Identities=17%  Similarity=0.227  Sum_probs=145.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH-
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRK-  105 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-  105 (232)
                      +.|.+...++.++...-+...+......|.++.-          +++..+......+..+.+++|++++|++.||+|.| 
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~l----------g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~  348 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVL----------GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT  348 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            3455666666666666666666666666665222          38999999999999999999999999999999988 


Q ss_pred             -HHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhh
Q 026854          106 -LSMVLMFVLACIFLLPLVF--------HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVG  176 (232)
Q Consensus       106 -~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  176 (232)
                       ++++.+..+..+..+...+        .++.+.+++..++.|++.|+.++...++.+|+.|+++.+.-+|++...+...
T Consensus       349 ~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s  428 (477)
T PF11700_consen  349 KRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS  428 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence             7877777666444443333        5677788889999999999999999999999999999999999999999999


Q ss_pred             hchhHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHhcccccccCCC
Q 026854          177 GMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETKGRE  222 (232)
Q Consensus       177 ~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  222 (232)
                      +.+||.+.+.+.+.+| .+..+....++.+++.++. ...++.|+++
T Consensus       429 s~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~  474 (477)
T PF11700_consen  429 SWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence            9999999999999987 5666666666666666555 4445554443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00895 2A0115 benzoate transport

Probab=99.68  E-value=2.6e-15  Score=119.19  Aligned_cols=153  Identities=25%  Similarity=0.338  Sum_probs=117.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh
Q 026854           23 FSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI  102 (232)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  102 (232)
                      ++++..+..+..+...+......+....+.|.+.++.+           .+..+.+.......++.+++.++.|+++||+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  312 (398)
T TIGR00895       244 FQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELG-----------FSLSLAATGGALFNFGGVIGSIIFGWLADRL  312 (398)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33334445555555555666677777788887776655           7777888888899999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhH
Q 026854          103 GRKLSMVLMFVLACIFLLPLVF-HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCP  181 (232)
Q Consensus       103 grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~  181 (232)
                      |||+...... +..+....... ..+.+......++.+++.+...+...++.+|.+|++.|+++.|+.+....+|..++|
T Consensus       313 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~  391 (398)
T TIGR00895       313 GPRVTALLLL-LGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGP  391 (398)
T ss_pred             chHHHHHHHH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9995544433 33333333333 455566667778888888888899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 026854          182 LVAVGL  187 (232)
Q Consensus       182 ~i~~~l  187 (232)
                      .+.|++
T Consensus       392 ~~~G~l  397 (398)
T TIGR00895       392 ILAGYL  397 (398)
T ss_pred             HhHHhc
Confidence            999875

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.68  E-value=5.3e-16  Score=129.58  Aligned_cols=159  Identities=10%  Similarity=0.003  Sum_probs=130.0

Q ss_pred             HHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 026854           47 GAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQ  126 (232)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  126 (232)
                      .....++.+.++++           .+..+.++..+...++..++.++.+++.||.|||+.+.++.++++++.++..+.+
T Consensus        51 ~~~~~l~~iek~F~-----------lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph  119 (633)
T TIGR00805        51 LVNSSLTTIERRFK-----------LSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH  119 (633)
T ss_pred             HHHhhchhhhhhhC-----------CCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence            33444566665555           8888999999999999999999999999999999999999999999888876542


Q ss_pred             ---------------------------------------------------hHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 026854          127 ---------------------------------------------------SAVVTTVLLFGVRMCATGTITVATIYAPE  155 (232)
Q Consensus       127 ---------------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e  155 (232)
                                                                         ....+++.+++.|++.+...+...+++.|
T Consensus       120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d  199 (633)
T TIGR00805       120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD  199 (633)
T ss_pred             HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence                                                               12346678999999999999999999999


Q ss_pred             ccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc----------------------chhHHHHHHHHHHHHHHHHHhc
Q 026854          156 IYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC----------------------HLRLAVILFEVVFVLAIASSLL  213 (232)
Q Consensus       156 ~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~----------------------g~~~~~~~~~~~~~~~~~~~~~  213 (232)
                      ++|++.|+...++.+....+|..+++.+++++.+.+                      +|+..|++.+++.++..+..++
T Consensus       200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999887643                      1566677777766666555444


Q ss_pred             cccc
Q 026854          214 FPFE  217 (232)
Q Consensus       214 ~~~e  217 (232)
                      + |+
T Consensus       280 ~-p~  282 (633)
T TIGR00805       280 F-PK  282 (633)
T ss_pred             C-cc
Confidence            4 44

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.67  E-value=1.7e-15  Score=122.19  Aligned_cols=179  Identities=15%  Similarity=0.143  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVL  110 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  110 (232)
                      ++...+..++.....+....|.|.+.++..          +.+..+.++......++.+++.+++|+++||+++++....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~  322 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGAT  322 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHcc----------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHH
Confidence            444444445555566777788999986542          3777888888888889999999999999999964332222


Q ss_pred             HHHHHH---HHHHHHHh--hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhh-chhHHHH
Q 026854          111 MFVLAC---IFLLPLVF--HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGG-MVCPLVA  184 (232)
Q Consensus       111 ~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~-~~~~~i~  184 (232)
                      +.....   ++......  ..+.+......+..+....+..........|.+|++.|+++.|+.+...++++ .++|.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~  402 (438)
T TIGR00712       323 GVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  402 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence            222211   11111111  12233333333333433222222223457799999999999999999988875 6899999


Q ss_pred             HHHhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          185 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       185 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      |.+.|+.|+...+.+..++.+++.+..++.+||.|
T Consensus       403 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       403 GYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999988888888888888877777777765

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.67  E-value=7.4e-15  Score=131.23  Aligned_cols=117  Identities=11%  Similarity=-0.026  Sum_probs=101.4

Q ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhhhhhhh
Q 026854           74 DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF---HQSAVVTTVLLFGVRMCATGTITVAT  150 (232)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (232)
                      ....++..++..++..++++++|+++||+|||++++++.++.++..+....   .++.+.+++.+++.|++.+...+...
T Consensus        46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  125 (1146)
T PRK08633         46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY  125 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence            344677788888999999999999999999999999888766555544333   45678888899999999999999999


Q ss_pred             hccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc
Q 026854          151 IYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS  190 (232)
Q Consensus       151 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  190 (232)
                      ++++|++|+++|++++|+......+|..+++.+++++.+.
T Consensus       126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998876

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.67  E-value=5.6e-15  Score=119.07  Aligned_cols=153  Identities=13%  Similarity=0.073  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH
Q 026854           30 TTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV  109 (232)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  109 (232)
                      .++...+..+......+....+.+.+.+...           .+....+.......++.+++.++.++++||+|||+.+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~  291 (437)
T TIGR00792       223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVL-----------GDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFA  291 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhheeEeeec-----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            3344444444444444444444555543322           23344556666778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhhhhhhhhccccccc-------cchhhhhhHHHHHhhhhhhchhH
Q 026854          110 LMFVLACIFLLPLVFH-QSAVVTTVLLFGVRMCATGTITVATIYAPEIYP-------TSARTTGAGVASAVGRVGGMVCP  181 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~g~~~~~  181 (232)
                      .+..+.+++.+...+. ++.+...+..++.+++.+...+..+++++|..|       ++.+|+..|+.+....+|..+++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~  371 (437)
T TIGR00792       292 GGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAG  371 (437)
T ss_pred             HHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHH
Confidence            9888877776666553 344555566677778888888888999888865       55679999999999999999999


Q ss_pred             HHHHHHhhccch
Q 026854          182 LVAVGLVTSCHL  193 (232)
Q Consensus       182 ~i~~~l~~~~g~  193 (232)
                      .+.|++.+..|+
T Consensus       372 ~i~g~ll~~~G~  383 (437)
T TIGR00792       372 FLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHcCC
Confidence            999999887665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.67  E-value=8.6e-15  Score=116.90  Aligned_cols=176  Identities=18%  Similarity=0.195  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS  107 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  107 (232)
                      .++++...+.+++....+.++..+.|.+.++.            .+.........+..+...+..+++|+++||+|+|++
T Consensus       251 ~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~------------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v  318 (462)
T PRK15034        251 RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ------------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV  318 (462)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH
Confidence            35677788888888888888888999988553            333333334445567788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-h-----hhHHHHHHHHHHHHHHHhhhhhhhhhcccccccc---------------------c
Q 026854          108 MVLMFVLACIFLLPLVF-H-----QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPT---------------------S  160 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~---------------------~  160 (232)
                      +.++.+.+.+....... .     .+.+...+..+...++.|..+...+.++++.+|+                     +
T Consensus       319 l~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~  398 (462)
T PRK15034        319 TLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVT  398 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHH
Confidence            99988877776654333 1     2344444444555566666777888888888874                     1


Q ss_pred             hhhhhhHHHHHhhhhhhchhHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHhccc
Q 026854          161 ARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFP  215 (232)
Q Consensus       161 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  215 (232)
                      +-|.+.|+....+.+|+++.|.+.+...+.+| +...++.+.+..+++..+.+.+.
T Consensus       399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        399 ETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            56788999999999999999999999988776 45567778888888777776654

>TIGR00901 2A0125 AmpG-related permease

Probab=99.67  E-value=5.1e-15  Score=116.20  Aligned_cols=159  Identities=16%  Similarity=0.127  Sum_probs=121.0

Q ss_pred             HHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh-----chHHH-HHHHHHHHHHHHHH
Q 026854           48 AVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI-----GRKLS-MVLMFVLACIFLLP  121 (232)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~-~~~~~~~~~~~~~~  121 (232)
                      .....|.+.++.+           .+.++.++.... .+...+ .+++|+++||+     ||||. ++.+..+.++....
T Consensus         7 ~~~~~~~~~~~~g-----------~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~   73 (356)
T TIGR00901         7 VGNTLPYWLRSKN-----------VSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI   73 (356)
T ss_pred             HHhHHHHHHHHcC-----------CCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH
Confidence            3445677777766           888888888655 444444 89999999998     88886 45666666666656


Q ss_pred             HHhh---hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc------
Q 026854          122 LVFH---QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH------  192 (232)
Q Consensus       122 ~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g------  192 (232)
                      +.+.   .+.+.+....++.+.+.+...+...++++|++|+++|+.+.++......+|..+++.+.+.+.+..+      
T Consensus        74 l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~  153 (356)
T TIGR00901        74 LSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLI  153 (356)
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence            6553   3444455555566666666778889999999999999999999999999999999999999988888      


Q ss_pred             --hhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          193 --LRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       193 --~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                        |+..+++.++..++..+..++..||++
T Consensus       154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       154 TLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence              999998888877776665555556654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.67  E-value=9.1e-15  Score=117.32  Aligned_cols=178  Identities=11%  Similarity=0.035  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSG-DSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS  107 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  107 (232)
                      +.++...+..++....+.....+.|.+.++ .+           .+..+.++..+...++..+++++.|+++||+|||+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-----------~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~   78 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDING-----------LSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKH   78 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence            445555556666666666667777777755 44           899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-h-hhHHH--HHHHHHHHHHHHhhhhhhhhhccccccc--cchhhhhhHHHHHhhhhhhchhH
Q 026854          108 MVLMFVLACIFLLPLVF-H-QSAVV--TTVLLFGVRMCATGTITVATIYAPEIYP--TSARTTGAGVASAVGRVGGMVCP  181 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~g~~~~~  181 (232)
                      ++++..+..+....... . .....  ......+.++..+...+.......++.+  .+.++...|.......+|..++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~  158 (420)
T PRK09528         79 LLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCA  158 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHH
Confidence            88766655443322111 1 11100  1111122222222222222222333332  24466778888888999999999


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          182 LVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       182 ~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      .+.+.+.+. +|+..+++.++..++..+..+...+|.
T Consensus       159 ~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~  194 (420)
T PRK09528        159 FIAGILFNI-NPQINFWLGSGSALILLVLLFFAKPDA  194 (420)
T ss_pred             HHHHHHHhc-CchHhHHHHHHHHHHHHHHHhcccccc
Confidence            999998774 788888887777766666655554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.67  E-value=1.1e-14  Score=130.02  Aligned_cols=143  Identities=11%  Similarity=-0.012  Sum_probs=110.6

Q ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           75 NSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFV---LACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      ...++..++..+..++.++++|+++||+|||+++.....   ..+.........++.+.+++.+++.|++.+...+...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            345677778889999999999999999999997643222   22222222222478888999999999999999999999


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      ++.|++|+++|++++|+.++...+|..++|.++|++.+..+|+..++...+..++. ++..+..|++
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  197 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKT  197 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCC
Confidence            99999999999999999999999999999999999999989987774333333333 3344444554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.66  E-value=1.1e-14  Score=114.61  Aligned_cols=174  Identities=14%  Similarity=0.131  Sum_probs=119.0

Q ss_pred             hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHH
Q 026854           19 FFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAII   98 (232)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l   98 (232)
                      +++++++   +.++.....+++....++.+..|.|.++++.+           .+.. .+....+..+...+   ..+++
T Consensus       185 ~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g-----------~s~~-~~~~~~l~~~~g~~---g~~~~  246 (368)
T TIGR00903       185 FGALAGR---KDLWIIGAILGFGVALFDNLAIWLEAALRPAG-----------LEDI-AGDAVALAILAGLI---GVAVI  246 (368)
T ss_pred             HHHHHcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CChH-HHHHHHHHHHHHHH---HHHHh
Confidence            4444433   55667777788888889999999999997654           5543 34444444444444   45788


Q ss_pred             HhhhchH---HHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhh
Q 026854           99 VDKIGRK---LSMV-LMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR  174 (232)
Q Consensus        99 ~dr~grr---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  174 (232)
                      +||..||   +... ....+.++.........+.........+.+++.....+..+++.+|.+|++.|+++.|+.+..++
T Consensus       247 ~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~  326 (368)
T TIGR00903       247 PDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSR  326 (368)
T ss_pred             hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHH
Confidence            8887543   3323 23333333333333333444444455556666666777788999999999999999999999999


Q ss_pred             hhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 026854          175 VGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL  212 (232)
Q Consensus       175 ~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  212 (232)
                      +++.++|.+.+.+..  +....|.++++..+++.+...
T Consensus       327 ~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       327 AISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988774  666778888777777766654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.66  E-value=1.9e-14  Score=117.35  Aligned_cols=145  Identities=14%  Similarity=0.147  Sum_probs=122.5

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF-----HQSAVVTTVLLFGVRMCATGTI  146 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~  146 (232)
                      .+....++......+..++.++++|.++||++||++++.+..+.++....+..     ..+.+.+++..++.|++.....
T Consensus        42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~  121 (524)
T PF05977_consen   42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN  121 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence            67788888888889999999999999999999999999999887765554443     3466778888889999998899


Q ss_pred             hhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccc
Q 026854          147 TVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  216 (232)
Q Consensus       147 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  216 (232)
                      |...+.++|+.|+++...+.++.....++...+||.++|.+....|....|.+-++..++.........+
T Consensus       122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~  191 (524)
T PF05977_consen  122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKP  191 (524)
T ss_pred             HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999999999999999889888888877766665544444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.66  E-value=6.6e-15  Score=120.88  Aligned_cols=144  Identities=21%  Similarity=0.170  Sum_probs=126.1

Q ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 026854           75 NSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAP  154 (232)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  154 (232)
                      .+.++..+...++..+++++.|+++|++|||+.++++.+...++.++...+++...+.+.+++.|++.|....+...+++
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          155 EIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC--HLRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       155 e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      |..|++.||...+..+....+|..++ ++.+...+..  +|+..+.+..+.+++..+. .++.||+++
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~  234 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPR  234 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence            99999999999999998888777777 6666665553  7887777777777776666 667788753

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.66  E-value=2e-14  Score=111.40  Aligned_cols=187  Identities=13%  Similarity=0.111  Sum_probs=139.7

Q ss_pred             cchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHH
Q 026854           17 SSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSA   96 (232)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   96 (232)
                      .+.++.++-.++++++......++.....|....|+..++++..          +.+.+...+....++++.++|+.++|
T Consensus       199 ~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~----------g~s~~~vs~~Ll~~Gv~~~~Gn~~gG  268 (394)
T COG2814         199 GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA----------GFSVSAVSLVLLAFGIAGFIGNLLGG  268 (394)
T ss_pred             cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHcc----------CCCHhHHHHHHHHHHHHHHHHHHHHh
Confidence            33333443333355555555566555555555555555554433          48999999999999999999999999


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhh
Q 026854           97 IIVDKIGRKLSMVLMFVLACIFLLPLVF-HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRV  175 (232)
Q Consensus        97 ~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  175 (232)
                      ++.|| +.|+.+.....+..+..+.+.+ .++.+...+..++.++.............++ .-++.+..+.++.....++
T Consensus       269 rl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nl  346 (394)
T COG2814         269 RLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNL  346 (394)
T ss_pred             hhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHH
Confidence            99999 9888888887877777777666 4455555555666666666666666666777 4467789999999999999


Q ss_pred             hhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccc
Q 026854          176 GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  215 (232)
Q Consensus       176 g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  215 (232)
                      |...|..++|.+.|+.|+....++.+...+++.+......
T Consensus       347 gia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         347 GIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888888887776665543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.66  E-value=5.1e-15  Score=118.43  Aligned_cols=166  Identities=13%  Similarity=0.150  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH-
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS-  107 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~-  107 (232)
                      +.++.....+++....++....|.|.++++.+         .+.+..+.+.......++.+++.++.|+++||++||+. 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~---------~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~  312 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFN---------QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH  312 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH
Confidence            34555666667777778888899999997642         12566777888889999999999999999999997664 


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHH
Q 026854          108 MVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGL  187 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  187 (232)
                      .........+.........+.........+.+++.....+..+....|.+|+++|+++.|+.+..+++|+.++|.+.|.+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i  392 (412)
T TIGR02332       313 TALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGIL  392 (412)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence            33333333333322222222222222222222222233344556667889999999999999999999999999999999


Q ss_pred             hhccc-hhHHHHHHHHH
Q 026854          188 VTSCH-LRLAVILFEVV  203 (232)
Q Consensus       188 ~~~~g-~~~~~~~~~~~  203 (232)
                      .+..| |...+++.+++
T Consensus       393 ~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       393 KDATGSFNSGLWFVAAL  409 (412)
T ss_pred             cccCCCCchhHHHHHHH
Confidence            99875 66666655543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.65  E-value=7.3e-15  Score=116.99  Aligned_cols=144  Identities=17%  Similarity=0.254  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 026854           42 AFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLP  121 (232)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  121 (232)
                      .........+.|.+..+..          +.+..+.+.......++.+++.++.|++.||+|||+.+..+.....+....
T Consensus       251 ~~~~~~~~~~~~~~~~~~~----------g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  320 (405)
T TIGR00891       251 NLYSHPIQDLLPTYLKADL----------GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIP  320 (405)
T ss_pred             HHHHhhhhhhhHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence            3334445556676664321          377888888888999999999999999999999999988877665433332


Q ss_pred             H-HhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc-hhH
Q 026854          122 L-VFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH-LRL  195 (232)
Q Consensus       122 ~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g-~~~  195 (232)
                      . ...++.+...+..++.+++.++..+....+++|.+|++.|+++.|+.+...++|+.++|.+.|++.++.| +..
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~  396 (405)
T TIGR00891       321 VFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGT  396 (405)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            2 2234444444444556666666677788899999999999999999999999999999999999999988 543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.65  E-value=1.3e-14  Score=115.63  Aligned_cols=177  Identities=13%  Similarity=0.070  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      |.++......++..........+.|.+.++..          +.+..+.++..+...++..++.++.|+++||+|||+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~   71 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVN----------GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHL   71 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            34555666667777777777777888775432          38889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh---hh-----hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchh
Q 026854          109 VLMFVLACIFLLPLVF---HQ-----SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVC  180 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  180 (232)
                      +.+....++.......   .+     ......+..++.+++.+...+....+..|..+  .++...|.....+++|..++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g  149 (396)
T TIGR00882        72 LWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALC  149 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHH
Confidence            8776665544332211   11     11223334455566665555666555555432  33456778888889999999


Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          181 PLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       181 ~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      |.+++.+.+ .+|+..|++.+++..+..+..+...||+
T Consensus       150 ~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       150 ASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             HHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999998766 4899888888777776665555544543

>TIGR00896 CynX cyanate transporter

Probab=99.65  E-value=3.7e-15  Score=116.97  Aligned_cols=147  Identities=10%  Similarity=-0.021  Sum_probs=120.9

Q ss_pred             HHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 026854           47 GAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQ  126 (232)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  126 (232)
                      .....+|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+.+.++.....++.... ..+
T Consensus        18 ~~~~~lp~l~~~~~-----------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~   85 (355)
T TIGR00896        18 SVGPLLPQIRSALG-----------MSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP   85 (355)
T ss_pred             cCcccHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc
Confidence            34556777777666           899999999999999999999999999999999999999988877776665 566


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc--hhHHHHHHHHHH
Q 026854          127 SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH--LRLAVILFEVVF  204 (232)
Q Consensus       127 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g--~~~~~~~~~~~~  204 (232)
                      +.+.+.+.+++.|++.+...+.......|.+| ++|+++.++.+....+|..+++.+.+.+.+..+  |+..+...++..
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~  164 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPA  164 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            77777888888898888777777778888886 579999999999999999999999998887653  776666655544


Q ss_pred             HH
Q 026854          205 VL  206 (232)
Q Consensus       205 ~~  206 (232)
                      ++
T Consensus       165 ~~  166 (355)
T TIGR00896       165 LL  166 (355)
T ss_pred             HH
Confidence            33

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.64  E-value=1.3e-14  Score=118.06  Aligned_cols=174  Identities=11%  Similarity=0.029  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH---
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRK---  105 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr---  105 (232)
                      ++++...+.++......+....+.|.+..+..          +.+..+.+...++..++..++.+++|+++||+|||   
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~  321 (476)
T PLN00028        252 YRTWILALTYGYSFGVELTMDNIIAEYFYDRF----------GLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGM  321 (476)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCc
Confidence            34444444454445555566677888764432          38888889999999999999999999999999875   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhH
Q 026854          106 ----LSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCP  181 (232)
Q Consensus       106 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~  181 (232)
                          ....+...+.++..+.....++.....+..++.+++.+...+..+++.+|..| +.|+++.|+.+..+++|+.++|
T Consensus       322 ~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~  400 (476)
T PLN00028        322 RGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQ  400 (476)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHH
Confidence                22223333333333333334444444444555555555566667777787754 6899999998777777777777


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          182 LVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       182 ~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      .+.+ ..+..++...+.+.+++.+++.++.++.
T Consensus       401 ~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        401 LLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            6654 1123357778888777777666555443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.64  E-value=2.1e-15  Score=122.08  Aligned_cols=169  Identities=8%  Similarity=0.048  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh--hchHHH
Q 026854           30 TTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK--IGRKLS  107 (232)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr--~grr~~  107 (232)
                      .++......+.....++....+.|.+.++.+           .+..+.+...++.+++.+++.++.|+++||  +++|+.
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g-----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  310 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKDKG-----------VDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQ  310 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHH
Confidence            3444444455555566666677888876655           788888999999999999999999999997  344433


Q ss_pred             HHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          108 MVL--MFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       108 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      ..+  +....++..+.....++.+.+.+..++.|++.+...+...+++.|.+|+++++++.|+.+....+|+.++|.+.|
T Consensus       311 ~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G  390 (455)
T TIGR00892       311 YLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAG  390 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccccee
Confidence            333  233333434444445667777777888888888888888999999999999999999999999999999999999


Q ss_pred             HHhhccc-hhHHHHHHHHHHHHHHH
Q 026854          186 GLVTSCH-LRLAVILFEVVFVLAIA  209 (232)
Q Consensus       186 ~l~~~~g-~~~~~~~~~~~~~~~~~  209 (232)
                      .+.+..+ +...+++.+++.+++.+
T Consensus       391 ~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       391 RLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             eeehhcCCcchHHHHhhHHHHHHHH
Confidence            9998774 77777776666555444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.64  E-value=5.3e-14  Score=111.56  Aligned_cols=175  Identities=10%  Similarity=-0.076  Sum_probs=127.4

Q ss_pred             chhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHH
Q 026854           18 SFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAI   97 (232)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (232)
                      ++++++++   |.++...+..+...........+.|.+.++.+           .+..+.+.......++.++..++.|+
T Consensus       197 ~~~~i~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g-----------~s~~~~g~~~~~~~~~~~~~~~~~g~  262 (382)
T PRK11128        197 AWKALLKE---PTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAG-----------YSASTIGYLWSLGVVAEVLIFAFSNR  262 (382)
T ss_pred             hHHHHHcC---hhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCC-----------CCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555543   33333333333333444444555666765554           77778888888888899999999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHh-hhhh
Q 026854           98 IVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAV-GRVG  176 (232)
Q Consensus        98 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~g  176 (232)
                      +.||+|+|+.+..+....++..+.....++.+...+..++.|++.+...+....+..+. +++++++..++.+.. ..+|
T Consensus       263 l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g  341 (382)
T PRK11128        263 LFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGS  341 (382)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHH
Confidence            99999999999999988888877777778888778888888888877777777877776 555678888887644 4577


Q ss_pred             hchhHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 026854          177 GMVCPLVAVGLVTSCHLRLAVILFEVVFVLAI  208 (232)
Q Consensus       177 ~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~  208 (232)
                      ..++|.++|.+.|..|.. .++..+++.+++.
T Consensus       342 ~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~  372 (382)
T PRK11128        342 IAIMTVLSGFLYQHLGAG-VFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence            789999999999998864 5555555554443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.64  E-value=3.9e-14  Score=112.14  Aligned_cols=174  Identities=16%  Similarity=0.150  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHH
Q 026854           36 VLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLA  115 (232)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~  115 (232)
                      +..+...........+.+.+.++.+          +.+....+...++..+++++.-...+++..|+|.|+++.++.+..
T Consensus       214 l~~~l~~~~~~~~~~f~~~yl~~~g----------g~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~  283 (400)
T PF03825_consen  214 LAAFLIGISHAAYYTFFSIYLQELG----------GYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAY  283 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcc----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3334444444445556677777665          245566677777888999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-hhHHHHHHH----HHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhh-hhhhchhHHHHHHHhh
Q 026854          116 CIFLLPLVFH-QSAVVTTVL----LFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVG-RVGGMVCPLVAVGLVT  189 (232)
Q Consensus       116 ~~~~~~~~~~-~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~g~~~~~~i~~~l~~  189 (232)
                      ++=..+.... ++.+.....    ..+.|+..+........++.+..|++.|+++.+++.... .+|..++..++|++.|
T Consensus       284 ~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~  363 (400)
T PF03825_consen  284 AVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD  363 (400)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9988887776 444433333    345888888899999999999999999999999998765 6999999999999999


Q ss_pred             ccchhH------HHHHHHHHHHHHHHHHhccccccc
Q 026854          190 SCHLRL------AVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       190 ~~g~~~------~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +.|.+.      .+.+.+++.++..++..++.+|++
T Consensus       364 ~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  364 AFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             HhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            887553      333444444444444444445543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.64  E-value=2.4e-14  Score=113.53  Aligned_cols=158  Identities=10%  Similarity=0.054  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHH
Q 026854           34 LWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFV  113 (232)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  113 (232)
                      +.+.++.....+.....++|.+.++.+           .+..+.++..+...+...+++++.|.++||+|||........
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g-----------~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~   77 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIG-----------LGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLA   77 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            444555555555566677889998776           899999999999999999999999999999998543322211


Q ss_pred             -HHHHHHH-HHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc
Q 026854          114 -LACIFLL-PLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC  191 (232)
Q Consensus       114 -~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  191 (232)
                       ...+..+ .....++.+.+++.+.+.+.+.+...+...++..|.  +++|++..|.....+.+|..++|.+.+++.+..
T Consensus        78 ~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~  155 (382)
T TIGR00902        78 LASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF  155 (382)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             1111112 222456777777788777777777778877776553  577899999999999999999999999999999


Q ss_pred             chhHHHHHHHHHH
Q 026854          192 HLRLAVILFEVVF  204 (232)
Q Consensus       192 g~~~~~~~~~~~~  204 (232)
                      ||+..+.+.....
T Consensus       156 g~~~~f~~~~~~~  168 (382)
T TIGR00902       156 DEQNILAILTAGL  168 (382)
T ss_pred             ChhHHHHHHHHHH
Confidence            9998887766553

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.64  E-value=4.4e-14  Score=113.51  Aligned_cols=180  Identities=11%  Similarity=0.056  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHh----hhch
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVD----KIGR  104 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~gr  104 (232)
                      ++++.+....++..+.+.....+.+.|.++.+           .+....+....+..+...+..++.|+++|    |+||
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg-----------~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GR   72 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTPYVQELG-----------IPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGR   72 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCC
Confidence            45556666677777777777777777887776           88899999999999999999999999999    5999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhhhhH-----------------HHHHHHHHHHHHHHhhhhhhhhhccccccccchh--hh
Q 026854          105 KLSMVLM-FVLACIFLLPLVFHQSA-----------------VVTTVLLFGVRMCATGTITVATIYAPEIYPTSAR--TT  164 (232)
Q Consensus       105 r~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r--~~  164 (232)
                      |+.++.+ .....++..++.+.++.                 +...+...+..++.....+...++++|..|+++|  +.
T Consensus        73 Rrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~  152 (477)
T TIGR01301        73 RRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRI  152 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHH
Confidence            9988775 55555555555553332                 1222333344456666778889999999999876  57


Q ss_pred             hhHHHHHhhhhhhchhHHHHHHH--hhcc-------------chhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          165 GAGVASAVGRVGGMVCPLVAVGL--VTSC-------------HLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       165 ~~~~~~~~~~~g~~~~~~i~~~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +.++.....++|+.+++.+++..  .+..             +.+..|.+.+++.++..++..+..+|.+
T Consensus       153 a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       153 ANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            88888999999999999988865  2211             4566788878888888888888888864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.64  E-value=1.1e-14  Score=115.35  Aligned_cols=134  Identities=19%  Similarity=0.171  Sum_probs=105.3

Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhhhhhhhhhccccc
Q 026854           85 SFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAV--------VTTVLLFGVRMCATGTITVATIYAPEI  156 (232)
Q Consensus        85 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~e~  156 (232)
                      .+...+++++.|+++||+|||+++..+..+..++.+...+.++..        .+.+.+++.|++.+...+....++.|.
T Consensus        45 ~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~  124 (394)
T TIGR00883        45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEY  124 (394)
T ss_pred             HHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhc
Confidence            344567899999999999999999999999999888887765543        466778888888888888899999999


Q ss_pred             cccchhhhhhHHHHHhhhhhhchhHHHHHHHh--------hccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          157 YPTSARTTGAGVASAVGRVGGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       157 ~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +|+++|++..++......+|..+++.+.+.+.        +..+|+..+.+.+...++.... ....||++
T Consensus       125 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~  194 (394)
T TIGR00883       125 APPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETP  194 (394)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCCh
Confidence            99999999999999999999999988876654        3467888887766655544433 23345543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.64  E-value=1.3e-14  Score=113.86  Aligned_cols=147  Identities=12%  Similarity=0.015  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHH-HHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHH
Q 026854           36 VLFFANAFSYYGAV-LLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVL  114 (232)
Q Consensus        36 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~  114 (232)
                      ...+......+... .+.|.+.++..          +.+..+.+.......++.+++.++.+++.||+|||+.+..+..+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  286 (365)
T TIGR00900       217 LLALLFNLVFAPAIVALFPYVQSKYL----------GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFV  286 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHh----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence            33333334443343 56777765421          27778888888899999999999999999999999998888777


Q ss_pred             HHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc
Q 026854          115 ACIFLLPLVFHQS-AVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH  192 (232)
Q Consensus       115 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g  192 (232)
                      .++........++ .+...+..++.+++.+...+...++..|..|++.|+++.|+.+...++++.++|.+.|++.|..|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       287 IGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            7777766666553 66667777888888888888999999999999999999999999999999999999999988654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.63  E-value=4.1e-14  Score=115.48  Aligned_cols=143  Identities=12%  Similarity=0.068  Sum_probs=107.1

Q ss_pred             CCchhhHHHH-HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHHHHHHHHhhhh
Q 026854           72 SKDNSLYVDV-FITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPL---VFH-QSAVVTTVLLFGVRMCATGTI  146 (232)
Q Consensus        72 ~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~g~~~~~~~  146 (232)
                      .+..+.+... ....++.+++.+++|+++||+|||+.+.++..+..+.....   ... ++.+.+....++..++.+...
T Consensus       255 ~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~  334 (491)
T PRK11010        255 FDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGT  334 (491)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            8888888876 45568999999999999999999888776665544443322   222 233333334444444444455


Q ss_pred             hhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          147 TVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       147 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      +..+++..+..|++.+++..++.+....+|..+++.+.|++.+..||...|.+.+++.+++.+.....
T Consensus       335 ~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        335 AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            66678888999999999999999999999999999999999999999888888888877776666544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.63  E-value=2.8e-14  Score=111.67  Aligned_cols=197  Identities=13%  Similarity=0.036  Sum_probs=146.4

Q ss_pred             chhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHH
Q 026854           18 SFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAI   97 (232)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (232)
                      +.+++.+-...|+++...+...+....++......|.|.+...       +..+.+....+...++..+..++...+..+
T Consensus       209 ~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f-------~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~  281 (412)
T PF01306_consen  209 SLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF-------QSAGQGNQMYGYLWSVQVFLEALMMFFSPW  281 (412)
T ss_dssp             -HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cccccChhHHhHHHHHHHHHHHHHHHHHHH
Confidence            3444443223345555544444444444444333444443322       001144455777888888999999999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHH-Hhhhhh
Q 026854           98 IVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVAS-AVGRVG  176 (232)
Q Consensus        98 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g  176 (232)
                      +.+|+|.|+.++++..++.+=.....+.++++.+.....+.++-.+.......-|+++.+|++..++...+.. ....+|
T Consensus       282 li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~  361 (412)
T PF01306_consen  282 LINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIG  361 (412)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHH
T ss_pred             HHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998888999999999999999999998864 555799


Q ss_pred             hchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCC
Q 026854          177 GMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGR  221 (232)
Q Consensus       177 ~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  221 (232)
                      ..+.+.+.|.+.|+.|.+..+++.+.+.+...++..+.+++.++.
T Consensus       362 ~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  362 IIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            999999999999999999999999988888888887777655543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10504 putative transporter; Provisional

Probab=99.63  E-value=7.1e-14  Score=113.79  Aligned_cols=148  Identities=10%  Similarity=0.008  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC-CCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHH
Q 026854           35 WVLFFANAFSYYGAVLLTSKLSSG-DSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFV  113 (232)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  113 (232)
                      ....++..........+.|.+.+. .+           .+..+.++......++..++.++.+++.||+|||+++..+..
T Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~  335 (471)
T PRK10504        267 LAGSFAGRIGSGMLPFMTPVFLQIGLG-----------FSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTL  335 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            333344444444455567777653 33           777888888888888888888999999999999999998888


Q ss_pred             HHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc
Q 026854          114 LACIFLLPLVFH---QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS  190 (232)
Q Consensus       114 ~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  190 (232)
                      +..+....+...   .+.+......++.|++.+...+.......+..|++.|+++.++.+....+|..+++.+.+.+.+.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~  415 (471)
T PRK10504        336 GLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL  415 (471)
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777776655542   22233334455666777777778888888999999999999999999999999999999999887


Q ss_pred             cch
Q 026854          191 CHL  193 (232)
Q Consensus       191 ~g~  193 (232)
                      .|+
T Consensus       416 ~g~  418 (471)
T PRK10504        416 FGQ  418 (471)
T ss_pred             hhh
Confidence            654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.62  E-value=3.9e-14  Score=115.69  Aligned_cols=151  Identities=13%  Similarity=0.079  Sum_probs=121.0

Q ss_pred             HHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhH
Q 026854           49 VLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSA  128 (232)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  128 (232)
                      ...++....+.|           .+ .+..|......++..++.++.|+++|.+|||..++.+.++..++.+....+++.
T Consensus        64 a~~l~~I~~diG-----------~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~  131 (599)
T PF06609_consen   64 ASILPYINADIG-----------GS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNM  131 (599)
T ss_pred             HHHHHHHHHhcC-----------CC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcH
Confidence            344566666665           33 444677778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 026854          129 VVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAI  208 (232)
Q Consensus       129 ~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~  208 (232)
                      ..+.....+.|++.+... .....++|+.|.+.|..+.++.....-.....+|.+...+..+.+||+.+++..+...++.
T Consensus       132 ~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~  210 (599)
T PF06609_consen  132 NTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL  210 (599)
T ss_pred             HHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence            999999999998865544 4566689999999999888777665556666788888777767799999999888776665


Q ss_pred             HHHh
Q 026854          209 ASSL  212 (232)
Q Consensus       209 ~~~~  212 (232)
                      +..+
T Consensus       211 vl~~  214 (599)
T PF06609_consen  211 VLIF  214 (599)
T ss_pred             HHHH
Confidence            4433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.62  E-value=4e-14  Score=112.78  Aligned_cols=142  Identities=10%  Similarity=0.082  Sum_probs=115.0

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      .+....+...++..+...++.+..|++.||+|||+.+.++..+.++........++.+...+..++.+++..........
T Consensus       251 ~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  330 (396)
T TIGR00882       251 QGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFK  330 (396)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456677778888888999999999999999999999988888887776666677777777777777776555556666


Q ss_pred             ccccccccchhhhhhHH-HHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhc
Q 026854          152 YAPEIYPTSARTTGAGV-ASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  213 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  213 (232)
                      +..+..|++.++++.+. .+....+|+.++|.+.|++.|..|++..+.+.+++..+..+...+
T Consensus       331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888887777 567788999999999999999999999999888888777665543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.62  E-value=4.1e-14  Score=112.18  Aligned_cols=165  Identities=12%  Similarity=0.022  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH----HHHHHHHH
Q 026854           38 FFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRK----LSMVLMFV  113 (232)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr----~~~~~~~~  113 (232)
                      +++..........++|.+.++.+           .+..+.++..+...+...+++++.|+++||+|||    +.+.+...
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g-----------~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~   81 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQG-----------YTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTL   81 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcC-----------CCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHH
Confidence            44444555566677888887776           8999999999999999999999999999999984    33322222


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccch
Q 026854          114 LACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHL  193 (232)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~  193 (232)
                      ..  ........++.+.+.+.+.+.+++.+...+...++..++  .++|+++.+.....+.+|..++|.+++++.++.||
T Consensus        82 ~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~  157 (382)
T PRK11128         82 LF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGE  157 (382)
T ss_pred             HH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence            11  112222246677777788888888777778777776665  45688889999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccc
Q 026854          194 RLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      +..+++.++...+..+.. +..||+
T Consensus       158 ~~~f~~~~~~~~~~~~~~-~~~~~~  181 (382)
T PRK11128        158 QAILWILTAGVASMLLGQ-LLRPTI  181 (382)
T ss_pred             hHHHHHHHHHHHHHHHHH-HccCCC
Confidence            998887766554444333 334554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.61  E-value=8.6e-15  Score=115.09  Aligned_cols=183  Identities=16%  Similarity=0.095  Sum_probs=151.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh-hchH
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK-IGRK  105 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr  105 (232)
                      +.|.++.++...+.--+++|++...+..|+...-      .++.+++++++.-....+..-.-...+++||++|| +|+|
T Consensus        19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~------~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~   92 (498)
T COG3104          19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQL------GDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR   92 (498)
T ss_pred             CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc------cccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            4577888889999999999999877777764332      11145778887777777766667888999999999 5999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhhhhhhhccccccccc--hhhhhhHHHHHhhhhhhchhH
Q 026854          106 LSMVLMFVLACIFLLPLVFHQ--SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTS--ARTTGAGVASAVGRVGGMVCP  181 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~  181 (232)
                      +++..+.+++.++.+.+....  +...+++...+..++.|..-+...+++.|.+|++  .|-.+.++.+...++|+.++|
T Consensus        93 ~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p  172 (498)
T COG3104          93 RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAP  172 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHH
Confidence            999999999999999998863  5667777777777899999999999999999764  377888899999999999999


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHHHHhccc
Q 026854          182 LVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  215 (232)
Q Consensus       182 ~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  215 (232)
                      .+.+++.+..||+..|...++-..++.+..+...
T Consensus       173 ~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         173 IITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999998888888777666553

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.61  E-value=9.3e-14  Score=110.44  Aligned_cols=157  Identities=13%  Similarity=-0.063  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHh-hhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 026854           43 FSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSF-AELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLP  121 (232)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  121 (232)
                      ........+.+.+.++.+           .+.++.+........ ..+++.++.|++.||+|+|+.+..+..+..+....
T Consensus       222 ~~~~~~~~~~~~~l~~~G-----------~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~  290 (390)
T TIGR02718       222 MTAVSGFGLSKLYLVDAG-----------WPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALL  290 (390)
T ss_pred             HHHHHHHHHhhHHHHhcC-----------CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            333334445677776665           888888888777654 56677899999999999999988777655333222


Q ss_pred             HHh------hhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccc-chhhhhhHHHHHhhhhhhchhHHHHHHHhhccchh
Q 026854          122 LVF------HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPT-SARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLR  194 (232)
Q Consensus       122 ~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~  194 (232)
                      ...      .++.........+.++..+...+.......+..++ +.+++.+++.+...++|..++|.+.|.+.|..|+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~  370 (390)
T TIGR02718       291 WFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYA  370 (390)
T ss_pred             HHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence            221      11222223333444445556666666666666665 88999999999999999999999999999998988


Q ss_pred             HHHHHHHHHHHHHHHH
Q 026854          195 LAVILFEVVFVLAIAS  210 (232)
Q Consensus       195 ~~~~~~~~~~~~~~~~  210 (232)
                      ..+...+++.+++.+.
T Consensus       371 ~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       371 GGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7887776666655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.60  E-value=4e-14  Score=109.16  Aligned_cols=181  Identities=17%  Similarity=0.163  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSS-GDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV  109 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  109 (232)
                      +..-.+..+...-+..+...+...+.. +.+           .+..+..+......+.+++|+++.|++.||+|.|+++.
T Consensus       254 i~~FLiA~~~~~DGv~til~~~~~fg~~~~g-----------ls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~  322 (438)
T COG2270         254 LVLFLIARFFYIDGVNTILAMGGVFGAADLG-----------LSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLM  322 (438)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeh
Confidence            333333444433344444445555554 443           89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhh
Q 026854          110 LMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVT  189 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  189 (232)
                      ++.++..+..+...+......+.++.++.|.+.|+.++...++.+++.|+++-++.+|+++..++.++.++|...+.+.+
T Consensus       323 ~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~  402 (438)
T COG2270         323 IGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQ  402 (438)
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence            99988888777777766666777778889999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhcccccccCCC
Q 026854          190 SCHLRLAVILFEVVFVLAIASSLLFPFETKGRE  222 (232)
Q Consensus       190 ~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  222 (232)
                      .+|....-....++.+...+..+...|+.++++
T Consensus       403 iTg~~r~g~~~i~vll~iGl~~L~~v~~~~~~~  435 (438)
T COG2270         403 ITGSSRAGVLSIIVLLLIGLLLLLRVKVPGRRE  435 (438)
T ss_pred             HhcchhhHHHHHHHHHHhhHhhEEeecCCCCcc
Confidence            887644433333333334444455556554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.60  E-value=9.2e-14  Score=113.32  Aligned_cols=155  Identities=14%  Similarity=0.046  Sum_probs=132.3

Q ss_pred             HHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 026854           48 AVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQS  127 (232)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  127 (232)
                      ....+|.+.++..          +.+....++..+..+++.++|+++.+++.+|+++++.+..+.+..+++.+.+.+.++
T Consensus       237 ~~aLlPl~a~~~l----------~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~  306 (524)
T PF05977_consen  237 VWALLPLFARDVL----------GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPS  306 (524)
T ss_pred             HHHhhhHHHHHHh----------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH
Confidence            3344677764332          377788899999999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHH
Q 026854          128 AVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA  207 (232)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~  207 (232)
                      .+...+..++.|++.........+...+..|++.||++++++.+....+..+|..+.|.+.+..|....+.+.++..+++
T Consensus       307 ~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~  386 (524)
T PF05977_consen  307 FWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLS  386 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            88888888888988888888888999999999999999999999999999999999999999999988887776665555


Q ss_pred             HHHHh
Q 026854          208 IASSL  212 (232)
Q Consensus       208 ~~~~~  212 (232)
                      .++..
T Consensus       387 ~~~~~  391 (524)
T PF05977_consen  387 ALIAL  391 (524)
T ss_pred             HHHHH
Confidence            55443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.59  E-value=1.1e-13  Score=112.46  Aligned_cols=175  Identities=13%  Similarity=0.157  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH-
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS-  107 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~-  107 (232)
                      +.++...+..++.....+....|.|.+.++..          +.+..+.++...+..++..++.++.|+++||+++|+. 
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~  330 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVL----------RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTL  330 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45666677777888888888889999985532          3788888898889999999999999999999875421 


Q ss_pred             -------HHHHHHHH--HHHHHHHHh-hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhh
Q 026854          108 -------MVLMFVLA--CIFLLPLVF-HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGG  177 (232)
Q Consensus       108 -------~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~  177 (232)
                             +..+....  .+..+.... ..+.....+...+.+.+.+...+.......|..|+ .+|.+.++.+..+.+++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~  409 (465)
T TIGR00894       331 SLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGG  409 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHH
Confidence                   11111111  111111111 22333333334444444444445555566677765 89999999999999999


Q ss_pred             chhHHHHHHHhhcc---chhHHHHHHHHHHHHHHHHHhcc
Q 026854          178 MVCPLVAVGLVTSC---HLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       178 ~~~~~i~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      .++|.+.|++.+..   +|...+.+.++..+++.++....
T Consensus       410 ~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       410 LIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            99999999887753   36667777777777766555443

>TIGR00896 CynX cyanate transporter

Probab=99.59  E-value=9.7e-14  Score=108.95  Aligned_cols=150  Identities=12%  Similarity=0.085  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh-chHHHHHH
Q 026854           32 VLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI-GRKLSMVL  110 (232)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~  110 (232)
                      +...+...+....++....|.|.+.++.+           .+..+.+...+...++.++++++.|++.||+ +||+.+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~g-----------~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~  268 (355)
T TIGR00896       200 WQVTVFFGLQSGLYYSLIGWLPAILISHG-----------ASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAV  268 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Confidence            33334444555666777788898887655           7888888999999999999999999999999 56777777


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccc-ccchhhhhhHHHHHhhhhhhchhHHHHHHHhh
Q 026854          111 MFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIY-PTSARTTGAGVASAVGRVGGMVCPLVAVGLVT  189 (232)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  189 (232)
                      +..+..++...+.+..+.... ....+.|++.+...+...+...+.. +++.++...++.+..+.++..++|.+.|++.|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~  347 (355)
T TIGR00896       269 LAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD  347 (355)
T ss_pred             HHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777766655554332222 2345677788777777766665544 46777899999999999999999999999999


Q ss_pred             ccch
Q 026854          190 SCHL  193 (232)
Q Consensus       190 ~~g~  193 (232)
                      +.|.
T Consensus       348 ~~g~  351 (355)
T TIGR00896       348 ISGN  351 (355)
T ss_pred             Hhcc
Confidence            8764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.59  E-value=3.8e-13  Score=103.50  Aligned_cols=164  Identities=15%  Similarity=0.111  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      +..+...+..++....-.+...|.+.|.++..        ..+.+..+.+...+....+..+|.++.+++.||+|+|+.+
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~--------~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l  211 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPH--------ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL  211 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            44555555566655566677888999985421        1137888889999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh
Q 026854          109 VLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV  188 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  188 (232)
                      .++..+..+..++....++... .....+.|++.+..+|...+...+.+|++ .+++.++. ..+.+|+.+.|.+.|.+.
T Consensus       212 ~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~la  288 (310)
T TIGR01272       212 AFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLA  288 (310)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence            8887777776655544333322 33455778888899999999998988765 45666664 567799999999999999


Q ss_pred             hccchhHHHHHHHHH
Q 026854          189 TSCHLRLAVILFEVV  203 (232)
Q Consensus       189 ~~~g~~~~~~~~~~~  203 (232)
                      |..|.+.++++...+
T Consensus       289 d~~g~~~a~~v~~~~  303 (310)
T TIGR01272       289 DCLGIQLAFALPVPC  303 (310)
T ss_pred             HhccchHHHHHHHHH
Confidence            988887777644333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.57  E-value=9.3e-14  Score=110.82  Aligned_cols=143  Identities=18%  Similarity=0.155  Sum_probs=113.7

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 026854           77 LYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF---HQSAVVTTVLLFGVRMCATGTITVATIYA  153 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  153 (232)
                      .....++..++.++|++..++++||+|||..+.++.++..++...+..   .++...+.+.+++.|+..+........++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            345667788999999999999999999999999999888888877776   57788899999999999999999999999


Q ss_pred             ccccccchhhhhhHHHHHhhhhhhchhHHHH-HHHhh-ccchhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          154 PEIYPTSARTTGAGVASAVGRVGGMVCPLVA-VGLVT-SCHLRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       154 ~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~-~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      .|..|.+.||....+......+|..++..++ ..+.. ...|+..+....+..++..+ ...+.||+++
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~-~l~~~PESPk  209 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA-LLPFLPESPK  209 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH-HHhcCCCCcc
Confidence            9999999999988888888888888885554 33332 33466555555555555544 4455588854

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.57  E-value=4.3e-13  Score=107.20  Aligned_cols=173  Identities=8%  Similarity=-0.155  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVL  110 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  110 (232)
                      ++...+.........+....+.|.+..+..          +.+..+.+.......++..++.++.|+++||+|+|+.+.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~  286 (406)
T PRK15402        217 FVAGALALGLVSLPLLAWIALSPVILISGE----------QLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRM  286 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            333333333333334444455676653321          2666777777777777888999999999999999999888


Q ss_pred             HHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          111 MFVLACIFLLPLVFH-----QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       111 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      +..+..++.......     .+.++..+..++.+++.+...+......... ++++|++..+..+....++..+++.+.+
T Consensus       287 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~  365 (406)
T PRK15402        287 GLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSK  365 (406)
T ss_pred             HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            887776666655442     2344455566667777766655555544333 4488999999999999999999999999


Q ss_pred             HHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          186 GLVTSCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       186 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      ++.+..++....+...+...+.......+
T Consensus       366 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK15402        366 HAYLGGGNGLFNLFNLANGLLWLLLVRIF  394 (406)
T ss_pred             hcccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            99888776654444444444443444333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.56  E-value=7.2e-14  Score=110.17  Aligned_cols=158  Identities=16%  Similarity=0.174  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhc-hHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIG-RKLS  107 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-rr~~  107 (232)
                      +.++...+..+......+....+.|.+.++..          +.+..+.+.......++.+++.++.|++.||.+ ||+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~  285 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEK----------GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG  285 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch
Confidence            33444555555556666667778888875432          377788888888999999999999999999864 3332


Q ss_pred             HH-HHH-HHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHH
Q 026854          108 MV-LMF-VLACIFLLPLVF--HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLV  183 (232)
Q Consensus       108 ~~-~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  183 (232)
                      .. ... ....++......  ..+.....+..++.|.+..+..+....+..|.+|++.|+++.|+.+....+|+.++|.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  365 (379)
T TIGR00881       286 PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP  365 (379)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhh
Confidence            22 222 112222222222  23334444555556655555566667788999999999999999999999999999999


Q ss_pred             HHHHhhccchhHH
Q 026854          184 AVGLVTSCHLRLA  196 (232)
Q Consensus       184 ~~~l~~~~g~~~~  196 (232)
                      .|.+.+..||+..
T Consensus       366 ~g~l~~~~g~~~~  378 (379)
T TIGR00881       366 LGYLADGFGWAGA  378 (379)
T ss_pred             HHHHHHhhccccc
Confidence            9999999887643

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.55  E-value=1.4e-12  Score=103.89  Aligned_cols=161  Identities=11%  Similarity=0.045  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHH-HHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHH
Q 026854           38 FFANAFSYYGAVLLT-SKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLAC  116 (232)
Q Consensus        38 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~  116 (232)
                      .++.....+....+. |.+.++.+           .+..+.+......+++.+++.++.+++.||.+|+...........
T Consensus       225 ~~~~~~~~~~~~~~~~p~~~~~~g-----------~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~  293 (394)
T PRK10213        225 IFMSFAGQFAFFTYIRPVYMNLAG-----------FGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-----------CChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            333333444444444 66665554           777788888888899999999999999999654443433333333


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHH
Q 026854          117 IFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLA  196 (232)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~  196 (232)
                      ....+....++.+......++.|++.+...+...+++.+..| +++++..++.....++|..+||.++|++.|..|....
T Consensus       294 ~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~  372 (394)
T PRK10213        294 SALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSP  372 (394)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhH
Confidence            333433445566666667777888887777878878888887 4466777777788889999999999999999888777


Q ss_pred             HHHHHHHHHHHHHH
Q 026854          197 VILFEVVFVLAIAS  210 (232)
Q Consensus       197 ~~~~~~~~~~~~~~  210 (232)
                      +...+.+..+..+.
T Consensus       373 ~~~~~~~~~~~~~~  386 (394)
T PRK10213        373 LMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77666555444433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.55  E-value=2e-13  Score=109.98  Aligned_cols=149  Identities=17%  Similarity=0.107  Sum_probs=133.5

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      ....+.+...+++.++.+++.++++.+.||++-.+.+....+...+..++....+|.+.+.+.+++.|++.++.+|....
T Consensus        78 ~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~  157 (495)
T KOG2533|consen   78 LVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVA  157 (495)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHH
Confidence            66778889999999999999999999999999777777777777776666666889999999999999999999999999


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh------hccchhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV------TSCHLRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      +++.++.+++|+..+|+.+....+|+++|+.+...+.      ...||++.|++-+++.++.+++.++++|+.+.
T Consensus       158 ~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  158 ILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            9999999999999999999999999999999998763      34589999999999999999999999887654

>PRK10054 putative transporter; Provisional

Probab=99.54  E-value=4e-13  Score=107.00  Aligned_cols=142  Identities=13%  Similarity=0.041  Sum_probs=109.8

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH-QSAVVTTVLLFGVRMCATGTITVAT  150 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~  150 (232)
                      .+....+.......+.........|++.||.++|+.+..+..+..+........ ++.+...+...+.+++.+...|...
T Consensus       241 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~  320 (395)
T PRK10054        241 FAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEY  320 (395)
T ss_pred             hHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            455556666777767777778899999999999999988887777777666553 4555555666777777777777888


Q ss_pred             hccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          151 IYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       151 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      ..+.+..|++.|++..+..+ ..++|..++|.++|.+.|+.|....+++.+....+..+....-
T Consensus       321 ~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  383 (395)
T PRK10054        321 MLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKG  383 (395)
T ss_pred             HHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhc
Confidence            88999999999999988654 6679999999999999999988878877766666666555533

>TIGR00901 2A0125 AmpG-related permease

Probab=99.54  E-value=1.8e-13  Score=107.53  Aligned_cols=145  Identities=12%  Similarity=0.132  Sum_probs=106.8

Q ss_pred             hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHH-hhhhhHHHHHHH
Q 026854           19 FFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITS-FAELPGLILSAI   97 (232)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~   97 (232)
                      ++++++++..+..+...+..+.....++....+.|.+.++.+           .+..+.+......+ ++.+++.+++|+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------~~~~~~g~~~~~~~~~~~~~g~~~~g~  267 (356)
T TIGR00901       199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMG-----------FSKEEIALVAKINGLLGAILGGLIGGI  267 (356)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            344443333233555555555566666777778888886654           77788777776555 678899999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhh
Q 026854           98 IVDKIGRKLSMVLMFVLACIFLLPLVFH-----------QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGA  166 (232)
Q Consensus        98 l~dr~grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~  166 (232)
                      +.||+|||+.+..+.++..+......+.           ++.+......++.+++.+...+...++..|.+|+++||+.+
T Consensus       268 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  347 (356)
T TIGR00901       268 IMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQM  347 (356)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHH
Confidence            9999999999888888777765544432           23455556667778888889999999999999999999999


Q ss_pred             HHHHHhhh
Q 026854          167 GVASAVGR  174 (232)
Q Consensus       167 ~~~~~~~~  174 (232)
                      |+.+...+
T Consensus       348 g~~~~~~~  355 (356)
T TIGR00901       348 ALLSSLSA  355 (356)
T ss_pred             HHHHHHHh
Confidence            99887664

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.53  E-value=6.3e-13  Score=106.00  Aligned_cols=152  Identities=9%  Similarity=0.062  Sum_probs=107.3

Q ss_pred             HHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHhhh
Q 026854           48 AVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVD-KIGRKLSMVLMFVLACIFLLPLVFHQ  126 (232)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~~~  126 (232)
                      ...+.|.+.++.+           .++.+.+...+...+....+....+++.| |++.++.+..+..+.+++...+...+
T Consensus       227 ~~~~~p~~~~~~~-----------~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~  295 (400)
T PRK11646        227 VMLMLPIMVNDIA-----------GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS  295 (400)
T ss_pred             HHHhhhhhHHhhc-----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Confidence            4456788876655           45566677766666666655555566665 56766666777777777766666666


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc----hhHHHHHHHH
Q 026854          127 SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH----LRLAVILFEV  202 (232)
Q Consensus       127 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g----~~~~~~~~~~  202 (232)
                      +.+...+...+.+.+.+...+...+++.|..|+++|+++.|+.+....+|..++|.+.|++.|+.+    ....+.....
T Consensus       296 ~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~  375 (400)
T PRK11646        296 NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGI  375 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHH
Confidence            665555555666666666778888999999999999999999999999999999999999998753    2333444444


Q ss_pred             HHHHHHHH
Q 026854          203 VFVLAIAS  210 (232)
Q Consensus       203 ~~~~~~~~  210 (232)
                      ..++..+.
T Consensus       376 ~~~~~~~~  383 (400)
T PRK11646        376 IGLITLLA  383 (400)
T ss_pred             HHHHHHHH
Confidence            44444433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.53  E-value=1.2e-12  Score=104.51  Aligned_cols=139  Identities=13%  Similarity=0.096  Sum_probs=96.5

Q ss_pred             CCchhhHHHHHHHH-hhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHH----HHHHHHH
Q 026854           72 SKDNSLYVDVFITS-FAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPL---VFH-QSAVVTTVLL----FGVRMCA  142 (232)
Q Consensus        72 ~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~----~~~g~~~  142 (232)
                      .+..+.++.....+ ++.+++.+++|++.||+|||+.+..+..+..+..+..   ... ++.+......    +..++..
T Consensus       242 ~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  321 (402)
T PRK11902        242 FSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGT  321 (402)
T ss_pred             CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence            77777777765544 5688999999999999999998877776655544333   222 3334443333    2344555


Q ss_pred             hhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          143 TGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       143 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      +...+....++.+.+|.+++    ++......++...++.++|.+.|..|+...|.+.+.+.+++.++.+..
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~  389 (402)
T PRK11902        322 AAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM  389 (402)
T ss_pred             HHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777888888886654    444555566776667789999999999988888888877776655444

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.53  E-value=1.2e-12  Score=104.16  Aligned_cols=125  Identities=14%  Similarity=0.035  Sum_probs=83.1

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      .+..+.+.......++.+++.++.+++.||+|||+.+..+..+..++...+...++.........+.+.+.+...+.  .
T Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~  313 (392)
T PRK10473        236 FSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--A  313 (392)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--H
Confidence            67777788888889999999999999999999999999988888777777666544443333333333333222222  2


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHH
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFE  201 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~  201 (232)
                      ...+..|.++|+   +.......++..+++.+.+++.+..|+.......+
T Consensus       314 ~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~  360 (392)
T PRK10473        314 MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIG  360 (392)
T ss_pred             HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            334455555443   44445556777788888888888777654343333

>PRK11043 putative transporter; Provisional

Probab=99.53  E-value=2.3e-12  Score=102.86  Aligned_cols=141  Identities=12%  Similarity=0.115  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 026854           42 AFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLP  121 (232)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  121 (232)
                      ...++....+.|.+.++.+           .+..+.++......++..++.++.+++.||+|+|+..........++...
T Consensus       216 ~~~~~~~~~~~p~~~~~~g-----------~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~  284 (401)
T PRK11043        216 SAAFFAWLTGSPFILEQMG-----------YSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIA  284 (401)
T ss_pred             HHHHHHHHHHhHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            3444555566787776554           77778887777778888999999999999999988765555444443332


Q ss_pred             HHh-----hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchh
Q 026854          122 LVF-----HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLR  194 (232)
Q Consensus       122 ~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~  194 (232)
                      +..     .++.+...+...+.+++.+...+.......|..| ++|+++.|+.+.....++..++.+.+.+.+.....
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~  361 (401)
T PRK11043        285 IWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLT  361 (401)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhH
Confidence            221     2333344444556677777777877777777776 57999999999998888889999999887754333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.53  E-value=1.1e-16  Score=129.58  Aligned_cols=145  Identities=17%  Similarity=0.175  Sum_probs=121.0

Q ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhhhhhhhh
Q 026854           74 DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQ---SAVVTTVLLFGVRMCATGTITVAT  150 (232)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~  150 (232)
                      .....+..+...++..+|+++.|+++||+|||+.++++..+..++.++..+++   +.+.+.+.+++.|++.|...+...
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34567888899999999999999999999999999999999999999999988   889999999999999999999999


Q ss_pred             hccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc---chhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          151 IYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC---HLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       151 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      .++.|..|++.|+...++.+....+|..++..+.....+..   +|+..+.+..+..++..+ ...+.||++
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP  195 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESP  195 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            99999999999999999999888888888877765443333   377666665555554443 445668873

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.52  E-value=3.9e-13  Score=108.38  Aligned_cols=169  Identities=11%  Similarity=0.054  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHHhhc-CCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh----hchH-HHHHHHHH
Q 026854           40 ANAFSYYGAVLLTSKLSS-GDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK----IGRK-LSMVLMFV  113 (232)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr-~~~~~~~~  113 (232)
                      ...........+++.+.. +.+           .+....+...++..+...+..++.|+++||    +||| +.++.+..
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~g-----------~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~   78 (437)
T TIGR00792        10 GNNFIFAIVSTYLLFFYTDVLG-----------LSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAI   78 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC-----------CCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHH
Confidence            334444445555555554 334           899999999999999999999999999998    6774 45667777


Q ss_pred             HHHHHHHHHHhhhh------HHHHHHHHHHHHHHHhhhhhhhhhcccccc-ccchhhhhhHHHHHhhhhhhchhHHHHHH
Q 026854          114 LACIFLLPLVFHQS------AVVTTVLLFGVRMCATGTITVATIYAPEIY-PTSARTTGAGVASAVGRVGGMVCPLVAVG  186 (232)
Q Consensus       114 ~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  186 (232)
                      ..+++.+.+...++      .....+..++.+.+.+.......++.+|+. ++++|++..++.+....+|+.+++.+.+.
T Consensus        79 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~  158 (437)
T TIGR00792        79 PFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLP  158 (437)
T ss_pred             HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766655332      234444555666666666667788889987 57889999999888888888777776655


Q ss_pred             Hhh-------ccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          187 LVT-------SCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       187 l~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +..       ..+|+..+.+.+++..+..+..++..||++
T Consensus       159 l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       159 LVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            543       347888888888887777776666667764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09848 glucuronide transporter; Provisional

Probab=99.52  E-value=5.6e-13  Score=107.91  Aligned_cols=154  Identities=12%  Similarity=0.006  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH
Q 026854           30 TTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV  109 (232)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  109 (232)
                      .+....+..++............|.+.++..          +.+.....+......++.+++.++.+++.||+|+|+.+.
T Consensus       229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~  298 (448)
T PRK09848        229 PLFMLCIGALCVLISTFAVSASSLFYVRYVL----------NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFL  298 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhheeeEeeec----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            3344444444444555555555666665432          244444344344445677889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccc-------hhhhhhHHHHHhhhhhhchh
Q 026854          110 LMFVLACIFLLPLVFH--QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTS-------ARTTGAGVASAVGRVGGMVC  180 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~~~~~~g~~~~  180 (232)
                      ++..+..++.+.+.+.  .+.+...+..++.+++.+...+..+++.+|..|.+       .+|...|+.+....+|..++
T Consensus       299 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig  378 (448)
T PRK09848        299 IGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIG  378 (448)
T ss_pred             HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHH
Confidence            9988887777666553  34455555566778888888888899988888754       45888999999999999999


Q ss_pred             HHHHHHHhhccch
Q 026854          181 PLVAVGLVTSCHL  193 (232)
Q Consensus       181 ~~i~~~l~~~~g~  193 (232)
                      +.+.+.+.+..|+
T Consensus       379 ~~i~g~~l~~~G~  391 (448)
T PRK09848        379 GSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999988876554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.51  E-value=1.8e-12  Score=102.88  Aligned_cols=141  Identities=11%  Similarity=0.068  Sum_probs=97.1

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF-HQSAVVTTVLLFGVRMCATGTITVAT  150 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (232)
                      .+..+.+.......++.+++.++.|++.||+|+|+.+..+..+..++.+.... .++.+...+..++.+.+..+..+...
T Consensus       232 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  311 (382)
T PRK10091        232 FSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQ  311 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            78888889999999999999999999999999999988888777776655543 33444444444444444333333223


Q ss_pred             -hccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHhcc
Q 026854          151 -IYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       151 -~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                       ....+..|++.++.+  ..+....+|..++|.+.|++.|. .++...+.+.++...+.......+
T Consensus       312 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        312 ILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence             334455555555544  34667789999999999999996 467777777666655554444443

>PRK09669 putative symporter YagG; Provisional

Probab=99.51  E-value=1.7e-12  Score=105.01  Aligned_cols=116  Identities=12%  Similarity=0.012  Sum_probs=88.5

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 026854           78 YVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF--HQSAVVTTVLLFGVRMCATGTITVATIYAPE  155 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e  155 (232)
                      ........+..+++.+++++++||+|+|+.+..+..+..+.......  .++.+...+..++.+++.+...+..+++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445556778888999999999999999998887666544433332  3455556666778888888888999999999


Q ss_pred             cccc-------chhhhhhHHHHHhhhhhhchhHHHHHHHhhccch
Q 026854          156 IYPT-------SARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHL  193 (232)
Q Consensus       156 ~~p~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~  193 (232)
                      ..+.       +..|...|.......+|..+++.+.|.+.+..|+
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8862       3345667888888899999999999999887665

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.51  E-value=2.8e-12  Score=98.51  Aligned_cols=180  Identities=19%  Similarity=0.121  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      -....+...++...+.........|.+.+.+.           .+..++++.......+..+.++..|++.+|+|+|+-+
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~-----------ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi   81 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFD-----------LTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI   81 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhC-----------ccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHH
Confidence            44455555666666666666777888886665           8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          109 VLMFVLACIFLLPLVF---HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      +.+..+++++..+..-   ..++..+++..++.+.+.+...+....+++.+.|++..+.-+.+...+..+|+.++|.+++
T Consensus        82 ~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~  161 (422)
T COG0738          82 VLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS  161 (422)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            9999999999998864   4566677777888888999999999999999999988888899999999999999999999


Q ss_pred             HHhhc-------------------cchhHHHHHHHHHHHHHHHHHhc-cccccc
Q 026854          186 GLVTS-------------------CHLRLAVILFEVVFVLAIASSLL-FPFETK  219 (232)
Q Consensus       186 ~l~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~-~~~e~~  219 (232)
                      ++..+                   ..++.++...+....+..+.... -.|+.+
T Consensus       162 ~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~  215 (422)
T COG0738         162 SLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQ  215 (422)
T ss_pred             HHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCC
Confidence            88873                   12455666666655554444333 234443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.50  E-value=3.4e-13  Score=104.91  Aligned_cols=193  Identities=15%  Similarity=0.083  Sum_probs=131.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR  104 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  104 (232)
                      +++.+.+.+.....+.-....+.+..-.|.+.....+.....   -+.+....+.......++.++|+++.|++.||+||
T Consensus        37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~---g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR  113 (538)
T KOG0252|consen   37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESG---GHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR  113 (538)
T ss_pred             HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCC---CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            334444444444555555666666666665543332111111   23566677888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh---h----hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhh
Q 026854          105 KLSMVLMFVLACIFLLPLVFH---Q----SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGG  177 (232)
Q Consensus       105 r~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~  177 (232)
                      |+++-..++++.++.+.....   +    -.+++...+++.|++.|+-+|+..+..+|....+.||.-.+........|.
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi  193 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI  193 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence            999999999999998866651   1    135677889999999999999999999999999999998888776666555


Q ss_pred             chhHHHHHHHh---hc-cc-----------hhHHHHHHHHHHHHHHHHHhcccccccCC
Q 026854          178 MVCPLVAVGLV---TS-CH-----------LRLAVILFEVVFVLAIASSLLFPFETKGR  221 (232)
Q Consensus       178 ~~~~~i~~~l~---~~-~g-----------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  221 (232)
                      ..|..+.-.+.   ++ .+           |+ .-+..+.+..+..+.....+|||++-
T Consensus       194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWR-l~~glg~vpa~~~ly~Rl~M~Et~~Y  251 (538)
T KOG0252|consen  194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWR-IIFGLGAVPALLVLYFRLKMPETARY  251 (538)
T ss_pred             hhccHHHHHHHHHHhccCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHhhhcCCcchhH
Confidence            54444433322   21 11           33 33344445555555556667888653

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.50  E-value=1.7e-13  Score=111.26  Aligned_cols=175  Identities=15%  Similarity=0.178  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhc--hHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIG--RKL  106 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~  106 (232)
                      +.++...+...+..+.++....++|.+.++.+           .+..+.....++.++..+++.++.|+++|+..  ++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g-----------~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~  366 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLG-----------LSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV  366 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence            55666667777788888889999999998776           89999999999999999999999999999987  556


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHH
Q 026854          107 SMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVG  186 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  186 (232)
                      ...++.+..+++...+.+.++++.+.....+.|++.+...+.....+.|+.+.+.-..+.|+...+..++..++|.+.|+
T Consensus       367 ~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~  446 (509)
T KOG2504|consen  367 LFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGL  446 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccccee
Confidence            67777788888887777788888899999999999999988888999999999999999999999999999999999999


Q ss_pred             Hhhccc-hhHHHHHHHHHHHHHHHHHhcc
Q 026854          187 LVTSCH-LRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       187 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      +.|.+| +...|...+...+++....++.
T Consensus       447 ~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  447 LYDITGNYDHAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             eeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence            999888 6666666666666666554443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.50  E-value=6.6e-12  Score=103.57  Aligned_cols=196  Identities=28%  Similarity=0.435  Sum_probs=143.0

Q ss_pred             cchhhhcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHH
Q 026854           17 SSFFTLFSRK-LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILS   95 (232)
Q Consensus        17 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (232)
                      ..+.++++.+ .++.++...+.++.....+|+.......+.                  .+........+.....+....
T Consensus       309 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg------------------~~~~~~~~~~~~~~~p~~~~~  370 (521)
T KOG0255|consen  309 ISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLG------------------GNIYLNFTLSGLVELPAYFRN  370 (521)
T ss_pred             CchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcC------------------chHHHHHHHHHHHHhhHHHHH
Confidence            3456666543 566777777777777777777765554332                  333555555566888888888


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHh
Q 026854           96 AIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAV---VTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAV  172 (232)
Q Consensus        96 g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  172 (232)
                      +...|++|||.....+..+..++.+...+..+..   ...+...+..++.+..+...+.+.+|++|+..|..+.+.....
T Consensus       371 ~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~  450 (521)
T KOG0255|consen  371 GLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAA  450 (521)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            9999999999999999999999988888743322   3455555566666666777799999999999999999999999


Q ss_pred             hhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCCchhhHHhhh
Q 026854          173 GRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAIE  231 (232)
Q Consensus       173 ~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  231 (232)
                      ..++++++|.+...... ......+.+++....+.+++...++|||+++++.+..++.|
T Consensus       451 ~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  451 ARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE  508 (521)
T ss_pred             HHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence            99999999998865544 22222333356666777777767889999988876655544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.50  E-value=4e-12  Score=101.11  Aligned_cols=177  Identities=16%  Similarity=0.051  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHH--HHHHhhhhhHHHHH-HHHHhhhchHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDV--FITSFAELPGLILS-AIIVDKIGRKLS  107 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~dr~grr~~  107 (232)
                      ...+...++.+...+.......|.+.++.+           .+.++.+...  ....+..++.+++. ++..||+|||+.
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g-----------~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~   71 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDG-----------APLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRS   71 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchh
Confidence            445666778888887888889999998887           8889988863  55677777777777 457899998888


Q ss_pred             HHHHHHHH-HHHHHHHH-h--hhh-HHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHH
Q 026854          108 MVLMFVLA-CIFLLPLV-F--HQS-AVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPL  182 (232)
Q Consensus       108 ~~~~~~~~-~~~~~~~~-~--~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~  182 (232)
                      .++...+. ......+. .  ..+ ..+.........++.....+....+..|..+++.++...+.......+|..+++.
T Consensus        72 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~  151 (390)
T TIGR02718        72 WVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGA  151 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            65555332 22222222 1  222 2233333444445555666777788888888888888888887777899999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          183 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       183 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      ..+++.+..||+..|++.+++..+..+..++..|++
T Consensus       152 ~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~  187 (390)
T TIGR02718       152 GTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA  187 (390)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999888777666655554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.49  E-value=1.7e-12  Score=105.98  Aligned_cols=151  Identities=12%  Similarity=0.086  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVL  110 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  110 (232)
                      +....+..+.....++....+.|.+.++..          +.+..+.++......++.+++.++.|++.||+|||+.+.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~  326 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVL----------GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTI  326 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHH
Confidence            333444555556666677778888886532          3788888999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHH
Q 026854          111 MFVLACIFLLPLVF----HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVG  186 (232)
Q Consensus       111 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  186 (232)
                      +..+..++...+.+    ..+.+......++.|++.+...+.......+..|+++|+++.++.+....+|+.+++.+.+.
T Consensus       327 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~  406 (485)
T TIGR00711       327 GLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT  406 (485)
T ss_pred             HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877776662    22344455556777887777776666777788899999999999999999999999999998


Q ss_pred             Hhhcc
Q 026854          187 LVTSC  191 (232)
Q Consensus       187 l~~~~  191 (232)
                      +.++.
T Consensus       407 ~~~~~  411 (485)
T TIGR00711       407 ILTNR  411 (485)
T ss_pred             HHHHH
Confidence            88753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10133 L-fucose transporter; Provisional

Probab=99.49  E-value=6.5e-12  Score=101.28  Aligned_cols=160  Identities=9%  Similarity=-0.015  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHHHHhh-cCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHH
Q 026854           38 FFANAFSYYGAVLLTSKLS-SGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLAC  116 (232)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~  116 (232)
                      .++.....+....|.+.+. ++..          +.+..+.+.......++.++++++.+++.||+|||+++..+..+..
T Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~~~----------g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~  336 (438)
T PRK10133        267 QFCYVGAQTACWSYLIRYAVEEIP----------GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM  336 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            3444444444555666664 3221          3888999999999999999999999999999999999888877766


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc-hhH
Q 026854          117 IFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH-LRL  195 (232)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g-~~~  195 (232)
                      +......+.++. .......+.+++.+..+|..++...|.+|++ .+++.++... ..+|+.++|.+.|.+.|..| .+.
T Consensus       337 ~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~  413 (438)
T PRK10133        337 ALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPT  413 (438)
T ss_pred             HHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHH
Confidence            655555444433 2344566788899999999999999998764 5677777753 45788899999999999887 666


Q ss_pred             HHHHHHHHHHHHHHH
Q 026854          196 AVILFEVVFVLAIAS  210 (232)
Q Consensus       196 ~~~~~~~~~~~~~~~  210 (232)
                      .+++.....+.....
T Consensus       414 ~~~v~~~~~~~~~~~  428 (438)
T PRK10133        414 AELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            776655555444443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.49  E-value=9.9e-13  Score=117.74  Aligned_cols=157  Identities=11%  Similarity=-0.070  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCch-hhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 026854           40 ANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDN-SLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIF  118 (232)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~  118 (232)
                      +.....+....+.|.+..+..          +.+.. ..++..+...++.+++.++.|+++||+++|+.+.++.++.+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~  312 (1146)
T PRK08633        243 YFWFISQLAQANFPAYAKEVL----------GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALS  312 (1146)
T ss_pred             HHHHHHHHHHHhhHHHHHHHh----------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHH
Confidence            333344444555666664322          36667 7888888899999999999999999999998888888888877


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc-cchhHHH
Q 026854          119 LLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS-CHLRLAV  197 (232)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~-~g~~~~~  197 (232)
                      .+.+....+.+...+..++.|++.+...+...+++.+..|++.||+++|+.+.+..+|..+++.+++.+... .++...+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~  392 (1146)
T PRK08633        313 LFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLF  392 (1146)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            777777667777777778888888888888899999999999999999999999999998888777765442 2333344


Q ss_pred             HHHHHHHHH
Q 026854          198 ILFEVVFVL  206 (232)
Q Consensus       198 ~~~~~~~~~  206 (232)
                      .+.+.+.++
T Consensus       393 ~~~~~~~~~  401 (1146)
T PRK08633        393 YLIALVTLI  401 (1146)
T ss_pred             HHHHHHHHH
Confidence            444444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.48  E-value=4.2e-12  Score=100.61  Aligned_cols=143  Identities=13%  Similarity=0.076  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHH
Q 026854           37 LFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLAC  116 (232)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~  116 (232)
                      .........+....+.|.+.++..          +.+..+.+.......++.+++.++.|++.||+|||+.+..+..+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  283 (385)
T TIGR00710       214 IYGASFGGFFAFFSGAPFVYIDIM----------GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFA  283 (385)
T ss_pred             HHHHHHHHHHHHHHcChHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            333344444555566676664221          3777888888888899999999999999999999999888877776


Q ss_pred             HHHHHHHhh-----hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc
Q 026854          117 IFLLPLVFH-----QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS  190 (232)
Q Consensus       117 ~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  190 (232)
                      ++...+...     .+.........+.+++.+...+.......|..| +.|+++.++.+.....++.+.+.+.+.+.+.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~  361 (385)
T TIGR00710       284 VSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGN  361 (385)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            666555442     122333444566677777777888888888887 5689999999888876555555555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.48  E-value=1.1e-12  Score=106.68  Aligned_cols=167  Identities=16%  Similarity=0.049  Sum_probs=139.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 026854           38 FFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACI  117 (232)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  117 (232)
                      ........+.+..+.+.+.++++           .+..+..+..++......+..++.+.+.||+|.|.+.+.+.++..+
T Consensus        55 ~~~~~g~~~~~Gv~~~~~~~~f~-----------~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   55 NLSTDGLINSFGLLFEELMDYFG-----------SSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL  123 (509)
T ss_pred             HHhhhcchheehhhHHHHHHHhC-----------CCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence            33334444555566777776665           6677789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHH-HHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHH
Q 026854          118 FLLPLVFHQSAVVTTVLL-FGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLA  196 (232)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~  196 (232)
                      +.++..++++.+.+++.. ++.|++.+..+....+.+...| ++.|+.+.|+......+|.++-|.+..++.+..||+..
T Consensus       124 g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~  202 (509)
T KOG2504|consen  124 GLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGA  202 (509)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHH
Confidence            999999999987766554 6677788777777777788777 56699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccc
Q 026854          197 VILFEVVFVLAIASSLLFPF  216 (232)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~  216 (232)
                      +++.+.+.+-..+......|
T Consensus       203 ~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  203 LLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHHHHHHHHHHHHHHHHcCC
Confidence            99999988777777776666

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.48  E-value=2.1e-12  Score=94.90  Aligned_cols=154  Identities=11%  Similarity=-0.023  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL  106 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  106 (232)
                      +.+.++.+.+..++.....+.+...-|.+.++..          +.+..+++-..+.....+.+.+++.|.++||+|++.
T Consensus       262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rf----------GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~  331 (459)
T KOG4686|consen  262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRF----------GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL  331 (459)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh----------CCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee
Confidence            4455666666666666665555555666664433          488888888888888888999999999999999998


Q ss_pred             HHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          107 SMVLMFVLACI-FLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      ..+.+..+..+ +-..+.+  +.+.-+....+.|..........|..++.+.|.++-|++.|+.+.+.++|-.+.|.+.|
T Consensus       332 ~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag  409 (459)
T KOG4686|consen  332 WWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAG  409 (459)
T ss_pred             hhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhh
Confidence            77766554433 3333333  12222334555666555555557778888899999999999999999999999999999


Q ss_pred             HHhhccc
Q 026854          186 GLVTSCH  192 (232)
Q Consensus       186 ~l~~~~g  192 (232)
                      .+.|+-|
T Consensus       410 ~i~d~~g  416 (459)
T KOG4686|consen  410 FIADGDG  416 (459)
T ss_pred             eeecCCC
Confidence            9998766

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.48  E-value=3.6e-12  Score=102.61  Aligned_cols=119  Identities=14%  Similarity=0.117  Sum_probs=102.6

Q ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhhhhhhhc
Q 026854           75 NSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQ--SAVVTTVLLFGVRMCATGTITVATIY  152 (232)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~  152 (232)
                      ...+.......++.+++.+++++++||+|+|+.+..+..+.+++.+.+.+.+  +.+..++...+.|++.+..++..+++
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            4456667778889999999999999999999999999999999888887764  88888889999999999999999999


Q ss_pred             ccccccc-------chhhhhhHHHHHhhhhhhchhHHHHHHHhhccch
Q 026854          153 APEIYPT-------SARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHL  193 (232)
Q Consensus       153 ~~e~~p~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~  193 (232)
                      .+|..+.       +..|...|+......++..+++.+.+.+.+..|+
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            9999873       3457888888888899999999999988876553

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.48  E-value=3.4e-12  Score=104.00  Aligned_cols=154  Identities=10%  Similarity=-0.000  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      |.+.......+......+....+.+.+.+...           .+....+.......++.+++.++.++++||+|+|+.+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~-----------~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~  299 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVI-----------GDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW  299 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEEC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence            44444445555555555555555555554332           2334445566666788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccc-------cchhhhhhHHHHHhhhhh
Q 026854          109 VLMFVLACIFLLPLVF-----HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYP-------TSARTTGAGVASAVGRVG  176 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~g  176 (232)
                      .++..+..++.+....     ..+.+...+..++.+++.+...+..+++++|..|       .+..|...|.......++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~  379 (473)
T PRK10429        300 AGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGG  379 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHH
Confidence            8888766655444332     2344555566677778888888889999999965       233455777888888999


Q ss_pred             hchhHHHHHHHhhccch
Q 026854          177 GMVCPLVAVGLVTSCHL  193 (232)
Q Consensus       177 ~~~~~~i~~~l~~~~g~  193 (232)
                      ..+++.+.|++.+..|+
T Consensus       380 ~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        380 SAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999876654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.47  E-value=7.2e-12  Score=99.10  Aligned_cols=113  Identities=13%  Similarity=0.118  Sum_probs=76.9

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF----HQSAVVTTVLLFGVRMCATGTIT  147 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~  147 (232)
                      .+..+.+.......++.+++.++.|++.||+|||+.+..+.....+..+....    ..+.+...+...+.+.+.+...+
T Consensus       227 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (377)
T PRK11102        227 VSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISS  306 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence            77888899999999999999999999999999999988887665444333222    12233333333333333334444


Q ss_pred             hhhhccccccccchhhhhhHHHHHhh-hhhhchhHHHHH
Q 026854          148 VATIYAPEIYPTSARTTGAGVASAVG-RVGGMVCPLVAV  185 (232)
Q Consensus       148 ~~~~~~~e~~p~~~r~~~~~~~~~~~-~~g~~~~~~i~~  185 (232)
                      .......|..| +.|+++.++.+... .+|..+++.+.+
T Consensus       307 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        307 NAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55556677776 78899999887765 466666666554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.46  E-value=6.5e-12  Score=95.28  Aligned_cols=180  Identities=13%  Similarity=0.109  Sum_probs=136.5

Q ss_pred             hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHH
Q 026854           20 FTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIV   99 (232)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~   99 (232)
                      ..++++   +..+.+.+.+-.+...+|....|+|.+..|.|           .|..+.+...+...+.+++.++....+.
T Consensus       202 ~~vw~~---~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G-----------~sa~~aG~llsl~~l~~~~~~ll~P~la  267 (395)
T COG2807         202 RKVWRS---PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG-----------LSAAEAGSLLSLMQLAQLPTALLIPLLA  267 (395)
T ss_pred             cccccC---chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-----------CCHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            345543   33445555566678899999999999999988           9999999999999999999999999999


Q ss_pred             hhh-chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccc-cchhhhhhHHHHHhhhhhh
Q 026854          100 DKI-GRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYP-TSARTTGAGVASAVGRVGG  177 (232)
Q Consensus       100 dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~  177 (232)
                      +|. ++|+..+....++.++...+.+.+....... .++.|++.++.++.....+.+-.+ +++-++-.++.+.++++-+
T Consensus       268 ~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllA  346 (395)
T COG2807         268 RRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLA  346 (395)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHH
Confidence            976 4777777777778777777766443322222 478888989999999888877764 4556778889999999999


Q ss_pred             chhHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHhcc
Q 026854          178 MVCPLVAVGLVTSCHLRLA-VILFEVVFVLAIASSLLF  214 (232)
Q Consensus       178 ~~~~~i~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~~  214 (232)
                      .++|.+.|++-|.+|.+.. ........++..+..+..
T Consensus       347 a~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         347 AFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             hhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999875544 444444444444444433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.46  E-value=2.6e-12  Score=94.59  Aligned_cols=155  Identities=12%  Similarity=0.078  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 026854           38 FFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACI  117 (232)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  117 (232)
                      ........|.+..|.|.+.+..+           .++++.........++..+ .++.|.+.||+|.+.++.++.....+
T Consensus        11 v~~~~Gt~Y~Fs~yS~~Lk~~l~-----------~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen   11 VQLCSGTTYTFSAYSPQLKSRLG-----------YSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             HHHhcCcccchhhhhHHHHHHhC-----------CCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            33455577899999999987776           9999999999999999876 48899999999999999999999999


Q ss_pred             HHHHHHhh-------hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc
Q 026854          118 FLLPLVFH-------QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS  190 (232)
Q Consensus       118 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  190 (232)
                      +...+...       .+.|.+.+..++.+.+.+...........+.||. +||++.|+.-....+++.+-..+...+.+.
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            98887761       2344555555555555544555556666788985 799999999999999888888877766655


Q ss_pred             cchhHHHHHHHHHHHH
Q 026854          191 CHLRLAVILFEVVFVL  206 (232)
Q Consensus       191 ~g~~~~~~~~~~~~~~  206 (232)
                       +....+.+.+....+
T Consensus       158 -~~~~fll~la~~~~~  172 (250)
T PF06813_consen  158 -DPSSFLLFLAVLPAV  172 (250)
T ss_pred             -ChHHHHHHHHHHHHH
Confidence             333333344443333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.46  E-value=3.6e-12  Score=104.40  Aligned_cols=150  Identities=11%  Similarity=0.022  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVL  110 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  110 (232)
                      +....+..+......+....+.|.+.+...          +.+..+.+.......++..++.++.|++.||+|||+.+..
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~----------g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  330 (495)
T PRK14995        261 ILSGVVMAMTAMITLVGFELLMAQELQFVH----------GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATG  330 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            334444455555566667778888876543          4888999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHH
Q 026854          111 MFVLACIFLLPLVF---HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGL  187 (232)
Q Consensus       111 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  187 (232)
                      +..+..++...+..   .++.+......++.|++.+...+.......+..|+++++.+.++.+...++|+.+|+.+.+.+
T Consensus       331 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        331 GMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877776655543   234445556677788888888888888888999999999999999999999999999999988


Q ss_pred             hhc
Q 026854          188 VTS  190 (232)
Q Consensus       188 ~~~  190 (232)
                      .+.
T Consensus       411 ~~~  413 (495)
T PRK14995        411 LSR  413 (495)
T ss_pred             HHH
Confidence            653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.44  E-value=2.5e-11  Score=97.07  Aligned_cols=162  Identities=9%  Similarity=-0.019  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHH
Q 026854           34 LWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFV  113 (232)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  113 (232)
                      ..+..++..........+++.+.++.+.         +.+.............+..+|.++++++.||+++|+.+.++..
T Consensus       237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~---------~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~  307 (410)
T TIGR00885       237 GVIAQFFYVGVQIMCWTFIIQYAVRLIP---------GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAI  307 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            3333444444444555677777754320         1233333344555557788999999999999999999888888


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc--
Q 026854          114 LACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC--  191 (232)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~--  191 (232)
                      +..+..++....++... .....+.+++.+..+|..++...+..+++.+..+.++....  +|+.+.|.+.|++.|..  
T Consensus       308 ~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~  384 (410)
T TIGR00885       308 IGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEI  384 (410)
T ss_pred             HHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcc
Confidence            88887777776555333 45556677788888899999999999888765556665554  99999999999999954  


Q ss_pred             ----chhHHHHHHHHHHHHH
Q 026854          192 ----HLRLAVILFEVVFVLA  207 (232)
Q Consensus       192 ----g~~~~~~~~~~~~~~~  207 (232)
                          +....|.+...+.+..
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~  404 (410)
T TIGR00885       385 AAAPAVNTSFILPLLCFAVI  404 (410)
T ss_pred             cccCccchHHHHHHHHHHHH
Confidence                3555566544444433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.42  E-value=2e-11  Score=97.16  Aligned_cols=142  Identities=10%  Similarity=-0.022  Sum_probs=106.4

Q ss_pred             CCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 026854           71 KSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVAT  150 (232)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (232)
                      +.+..+.+.......++.++++++.+++.||.++|+.+..+.. .++....+...++.+...+..++.|++.+...+...
T Consensus       237 g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~  315 (393)
T PRK11195        237 GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMN  315 (393)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH
Confidence            3778889999999999999999999999999998887777653 334443444455555555666677777777677777


Q ss_pred             hccccccccch-hhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          151 IYAPEIYPTSA-RTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       151 ~~~~e~~p~~~-r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      +...|..|++. +|++.++.+...+++..++..+.+.+ +..|.+..+.+.+...++...+.+.+
T Consensus       316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            77888766655 79999999999999999999998855 56687777776665555555444444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.42  E-value=2.6e-12  Score=100.43  Aligned_cols=138  Identities=20%  Similarity=0.288  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCC-chhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHH
Q 026854           34 LWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSK-DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMF  112 (232)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~  112 (232)
                      .....+......+....+.|.+.++..          +.+ ..+.+.......+...++.++.|++.||+|+|+......
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVL----------GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAI  280 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHH----------HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhcc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            333444444556667788888743222          366 577788888899999999999999999999887777777


Q ss_pred             HHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhH
Q 026854          113 VLACIFLLPLVF---HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCP  181 (232)
Q Consensus       113 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~  181 (232)
                      ....+.......   .++........++.|++.+...+....+..|..|+++|+++.|+.+...++++.++|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  281 LLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            776666666554   234456666777788888888999999999999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.42  E-value=4.8e-12  Score=101.77  Aligned_cols=185  Identities=15%  Similarity=0.168  Sum_probs=134.8

Q ss_pred             ccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHH
Q 026854           16 FSSFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILS   95 (232)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (232)
                      +.++++++++   +.++.+++..++.....+.+..|.|.|.++..          +++..+.++..++..+...+..+++
T Consensus       248 ~vP~~~i~ts---~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL----------~f~v~~~G~~salP~l~~~~~k~~~  314 (466)
T KOG2532|consen  248 PVPYKAILTS---PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL----------GFDVRETGFLSALPFLAMAIVKFVA  314 (466)
T ss_pred             CCCHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh----------CCChhhhhHHHHHHHHHHHHHHHHH
Confidence            4567777765   67888888999999999999999999997655          5899999999999999999999999


Q ss_pred             HHHHhhhch---------HHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhh
Q 026854           96 AIIVDKIGR---------KLSMVLMFVLACIFLLPLVFHQ--SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTT  164 (232)
Q Consensus        96 g~l~dr~gr---------r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~  164 (232)
                      |.++||.-+         |..-.++....++..+.+.+.+  +.+...++..+.....|...+-.+.-..+.. ++.-+.
T Consensus       315 g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~  393 (466)
T KOG2532|consen  315 GQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGF  393 (466)
T ss_pred             HHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHH
Confidence            999998744         3344455566666666666543  2222222222222223333333333334434 555699


Q ss_pred             hhHHHHHhhhhhhchhHHHHHHHhh---ccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          165 GAGVASAVGRVGGMVCPLVAVGLVT---SCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       165 ~~~~~~~~~~~g~~~~~~i~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      .+|+.+....+.++++|.+.+.+..   ...|+..|.+.+++.+++.++..++
T Consensus       394 l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  394 VMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            9999999999999999999999984   2368889999888888887655554

>PRK11462 putative transporter; Provisional

Probab=99.41  E-value=3.4e-11  Score=97.68  Aligned_cols=117  Identities=13%  Similarity=0.081  Sum_probs=78.4

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 026854           77 LYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFH--QSAVVTTVLLFGVRMCATGTITVATIYAP  154 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  154 (232)
                      .........++.+++.+++++++||+|+|+.+..+..+..+..+.+.+.  .+.....+..++.+++.+...+..+++.+
T Consensus       265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~a  344 (460)
T PRK11462        265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMS  344 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667778889999999999999999988775555444433333332  22223344445566666666677788888


Q ss_pred             cccc-----cchhhhhh--HHHHHhhhhhhchhHHHHHHHhhccch
Q 026854          155 EIYP-----TSARTTGA--GVASAVGRVGGMVCPLVAVGLVTSCHL  193 (232)
Q Consensus       155 e~~p-----~~~r~~~~--~~~~~~~~~g~~~~~~i~~~l~~~~g~  193 (232)
                      |..+     +..|..+.  +.......+|..+++.+.|.+.+..|+
T Consensus       345 d~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        345 DTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7765     23444444  555577889999999999988876543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.40  E-value=2.2e-11  Score=97.68  Aligned_cols=140  Identities=13%  Similarity=0.010  Sum_probs=93.6

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGR-KLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVAT  150 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (232)
                      .+..+.++..+...++.++++++.|+++||+|| |+++.++.....+......+.++.+.+.+.+++.++..+...+...
T Consensus        35 ~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  114 (418)
T TIGR00889        35 FSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTN  114 (418)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHH
Confidence            899999999999999999999999999999964 7788877777777766666667777777777777766554444433


Q ss_pred             hc----cc----cccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          151 IY----AP----EIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       151 ~~----~~----e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ++    ..    |......|.+..|      .+|..++|.+.+.+.. .+.+.++++.++..++..+.. +..||++
T Consensus       115 ~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~-~~~~~~f~~~~~~~~~~~~~~-~~~~e~~  183 (418)
T TIGR00889       115 SISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI-ELSNIQLYITAGSSALLGVFA-LTLPDIP  183 (418)
T ss_pred             HHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHH-hcCCCCC
Confidence            32    22    2222223333333      4678888888887732 222335666666555555443 4557753

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09669 putative symporter YagG; Provisional

Probab=99.38  E-value=9.9e-12  Score=100.54  Aligned_cols=172  Identities=12%  Similarity=0.076  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh----hchH-HHHHHH
Q 026854           37 LFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK----IGRK-LSMVLM  111 (232)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr-~~~~~~  111 (232)
                      ..+.....+.....+++.+.++..          +.+....+....+..+...+..++.|+++||    +||| +.++.+
T Consensus        17 g~~~~~~~~~~~~~~l~~~~t~~~----------gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~   86 (444)
T PRK09669         17 GDTACNLVWQTVMLFLAYFYTDVF----------GLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWF   86 (444)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHH
Confidence            334444444555555555554332          4899999999999999999999999999998    7764 556667


Q ss_pred             HHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHhhhhhhhhhcccccc-ccchhhhhhHHHHHhhhhhhchhHHHH
Q 026854          112 FVLACIFLLPLVFHQS------AVVTTVLLFGVRMCATGTITVATIYAPEIY-PTSARTTGAGVASAVGRVGGMVCPLVA  184 (232)
Q Consensus       112 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~i~  184 (232)
                      .+..+++..+....++      ..+..+..++.+.+.........++.+|+. ++++|.+..++......+|+.+++.+.
T Consensus        87 ~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~  166 (444)
T PRK09669         87 AIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA  166 (444)
T ss_pred             HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6776666655444321      234444444555555566666778899987 568899988888888888888877665


Q ss_pred             HHHhhc-------cchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          185 VGLVTS-------CHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       185 ~~l~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      ..+...       .+|...+.+.+++..+..+..++..+|.
T Consensus       167 ~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        167 LPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            444432       2455566666666666655555555554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.38  E-value=1.4e-11  Score=110.37  Aligned_cols=167  Identities=11%  Similarity=-0.000  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH
Q 026854           30 TTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV  109 (232)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  109 (232)
                      .++...+..+...+.......+.|.+.++..          +.+....++..+...++.+++.++.|+++||.++++.+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~  295 (1140)
T PRK06814        226 RIWLAILGISWFWLVGAVVLSQLPLLAKETL----------GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVP  295 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHc----------CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeh
Confidence            3444444444455555566667888875532          377888899999999999999999999999887766555


Q ss_pred             HHHHHHHHHHHHHHhh--------------------hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHH
Q 026854          110 LMFVLACIFLLPLVFH--------------------QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVA  169 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  169 (232)
                      .+.++.++..+.+.+.                    .+.+.+.+..++.|++.+...+...+++.+..|++.||+++|+.
T Consensus       296 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~  375 (1140)
T PRK06814        296 IGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAAN  375 (1140)
T ss_pred             HHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHH
Confidence            5555444444333221                    45566667777788888888888999999999999999999999


Q ss_pred             HHhhhhhhchhHHHHHHHhhc-cchhHHHHHHHHHHHH
Q 026854          170 SAVGRVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVL  206 (232)
Q Consensus       170 ~~~~~~g~~~~~~i~~~l~~~-~g~~~~~~~~~~~~~~  206 (232)
                      +....++..+++.+.+.+.+. .+....+.+.+.+.++
T Consensus       376 ~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        376 NVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            999999999999999988753 3445444444443333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.36  E-value=8.5e-11  Score=93.38  Aligned_cols=153  Identities=14%  Similarity=0.083  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH
Q 026854           30 TTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV  109 (232)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  109 (232)
                      ++...++..++..............|.+..-          +.++............+.+++.++..++++|+|+|+++.
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~l----------g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~  306 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVL----------GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL  306 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEc----------CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH
Confidence            3333444444444444444444555543322          355566666777777778888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhhhhhhhccccccc-------cchhhhhhHHHHHhhhhhhchh
Q 026854          110 LMFVLACIFLLPLVFHQ--SAVVTTVLLFGVRMCATGTITVATIYAPEIYP-------TSARTTGAGVASAVGRVGGMVC  180 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~g~~~~  180 (232)
                      ++.++..++...+.+.+  +.+..++..++.+++.+...+..|++++|..+       .+.-|...+....+..+|..++
T Consensus       307 ~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala  386 (467)
T COG2211         307 IGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALA  386 (467)
T ss_pred             HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence            99999999999888854  55666667788889999999999999999864       2333566677778888999999


Q ss_pred             HHHHHHHhhccc
Q 026854          181 PLVAVGLVTSCH  192 (232)
Q Consensus       181 ~~i~~~l~~~~g  192 (232)
                      ..+.|++.+..|
T Consensus       387 ~~~~g~~L~~~G  398 (467)
T COG2211         387 GFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHcC
Confidence            999999987665

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.34  E-value=2.4e-11  Score=92.51  Aligned_cols=178  Identities=16%  Similarity=0.145  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      .........+....+-........|......+           .+..+..+.......+..+++..+|.++|++|||+..
T Consensus        78 yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~-----------~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f  146 (528)
T KOG0253|consen   78 YLFFVAGMGWMADAMEMMLLSLILPALDEVWG-----------PSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGF  146 (528)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc-----------hhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhh
Confidence            33334444444444444444555565554433           6667777888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh
Q 026854          109 VLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV  188 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  188 (232)
                      .+.....++..++-..++++.++.+++.+.+++.|+ .|...++-.|..|...|..-+-+. ..+.+|.++...+.-...
T Consensus       147 ~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm  224 (528)
T KOG0253|consen  147 NLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM  224 (528)
T ss_pred             hhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999999988899999999999999999988 888999999999999999866666 777899999999988888


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          189 TSCHLRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       189 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      .++||++..........+.+ ...++.||..+
T Consensus       225 ~~~gwr~~l~~~~~pl~~~a-~f~~w~~ESpR  255 (528)
T KOG0253|consen  225 SNFGWRYLLFTSSTPLMFAA-RFLVWVYESPR  255 (528)
T ss_pred             HhhhHHHHHHHHHhHHHHHH-HHHhhcccCcc
Confidence            99999977666664444444 44556688754

>TIGR00788 fbt folate/biopterin transporter

Probab=99.34  E-value=5.9e-11  Score=96.45  Aligned_cols=176  Identities=13%  Similarity=0.102  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhc----
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSS-GDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIG----  103 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g----  103 (232)
                      ....++...++..... +......+.+++ +++           .+..+.+...+...+...+-.+ +|.++||++    
T Consensus        26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg-----------~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~   92 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLG-----------LDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGY   92 (468)
T ss_pred             hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCc
Confidence            3444555567777777 555444454554 455           8889988888888888777555 999999997    


Q ss_pred             -hHHHHHHHHHHHH-HHHHHHHhhhhH-HHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhh---hHHHHHhhhhhh
Q 026854          104 -RKLSMVLMFVLAC-IFLLPLVFHQSA-VVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTG---AGVASAVGRVGG  177 (232)
Q Consensus       104 -rr~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~---~~~~~~~~~~g~  177 (232)
                       ||+.++++.++.. +....+...++. ....+..++.+++.+.......++..|..+ +.+..+   .++.+...++|.
T Consensus        93 rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~  171 (468)
T TIGR00788        93 TKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGG  171 (468)
T ss_pred             cchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHH
Confidence             7777777776653 333333323332 233335667777777777889999999998 544443   344444556899


Q ss_pred             chhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          178 MVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       178 ~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      .+++.++|.+.+..+|+..+++.+++.++..+ ...+.+|++
T Consensus       172 ~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~-~~~~~~E~~  212 (468)
T TIGR00788       172 LISSLLGGPLLDKTLTRILFLITAALLLLQLF-VSNLSKERR  212 (468)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH-HHHhccccc
Confidence            99999999999999999999888888777743 344557754

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.34  E-value=5.9e-11  Score=96.76  Aligned_cols=174  Identities=11%  Similarity=0.029  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHh----hhch-HHHHH
Q 026854           35 WVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVD----KIGR-KLSMV  109 (232)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~gr-r~~~~  109 (232)
                      .+..+...+.......|++.|.++..          +.+....+....+.-+...+..++.|+++|    |+|| |+.++
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~----------Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il   81 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVV----------GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL   81 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence            34445555666666666666665442          388999999999999999999999999999    5697 56666


Q ss_pred             HHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHhhhhhhhhhcccccc-ccchhhhhhHHHHHhhhhhhchhHH
Q 026854          110 LMFVLACIFLLPLVFHQS------AVVTTVLLFGVRMCATGTITVATIYAPEIY-PTSARTTGAGVASAVGRVGGMVCPL  182 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~  182 (232)
                      .+...++++..++...++      ..+..+..++...+.........++.+|+. ++++|.+..++.....++|+.+.+.
T Consensus        82 ~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~  161 (473)
T PRK10429         82 IGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAG  161 (473)
T ss_pred             hhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777666554221      223334444555666667777888999998 5899999998877777777666665


Q ss_pred             HHHHHhhcc-------chhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          183 VAVGLVTSC-------HLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       183 i~~~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      +...+.+..       ++.....+.+++..+..+..++..||.
T Consensus       162 ~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        162 FTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            554433222       334444455555555555555555664

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.7e-10  Score=88.97  Aligned_cols=174  Identities=12%  Similarity=0.105  Sum_probs=128.3

Q ss_pred             hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHH
Q 026854           19 FFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAII   98 (232)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l   98 (232)
                      ..+++++++.+.   ..+..++....-.....|++.+..+..          +.+..+.....+....+.++|.+++.++
T Consensus       229 ~~~l~~~~~~~~---gvl~~FlYVG~Eva~gsfl~~y~~~~~----------g~~~~~aa~~~s~~~~~~~vGRFig~~l  295 (422)
T COG0738         229 LSSLFQNKHLRL---GVLAIFLYVGAEVAIGSFLVSYLEELL----------GLNEQQAAYYLSFFWVGFMVGRFIGSAL  295 (422)
T ss_pred             HHHHHhChHHHH---HHHHHHHHHhHHHHHHHHHHHHHHhcC----------CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455665544444   344444444444456667788886633          3888999999999999999999999999


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhc
Q 026854           99 VDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGM  178 (232)
Q Consensus        99 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~  178 (232)
                      ..|+...|.+.+..++..+.++...+.++.. .....++.|.+.+..+|..++...+..|.+  .+..|.......+|+.
T Consensus       296 m~~~~~~k~Laf~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~--ts~~s~~l~maivGGA  372 (422)
T COG0738         296 MSRIKPEKYLAFYALIAILLLLAVALIGGVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGGA  372 (422)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCcc--ccccceeeeeheecch
Confidence            9999999999888888777777777766643 344456778889999999999999999943  3334444455568999


Q ss_pred             hhHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 026854          179 VCPLVAVGLVTSCHLRLAVILFEVVFVLAI  208 (232)
Q Consensus       179 ~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~  208 (232)
                      +.|.+.|++.|+.|....+......|.+..
T Consensus       373 iiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         373 IIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            999999999999988777664444444443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.29  E-value=5.1e-11  Score=96.30  Aligned_cols=161  Identities=10%  Similarity=0.031  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh----h
Q 026854           27 LIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK----I  102 (232)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~  102 (232)
                      ..+.++...+.+++.....|++..|+|.++++..          +.+..++....+...++.+++.+++|+++||    .
T Consensus       271 ~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~----------~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~  340 (495)
T KOG2533|consen  271 KDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNG----------GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF  340 (495)
T ss_pred             hchhHHHHHHHHHHHhhccccHHHHHHHHHHcCC----------CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH
Confidence            4467888888999999999999999999997732          4888899999999999999999999999999    6


Q ss_pred             chHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhh-hhHHHHHhhhhhhchh
Q 026854          103 GRKLSMVLMFVLACIFL-LPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTT-GAGVASAVGRVGGMVC  180 (232)
Q Consensus       103 grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~~~g~~~~  180 (232)
                      .+|........+..+.. ..+....+........+....+.....+....+.++....+.|.. ..+......+.++.++
T Consensus       341 ~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~  420 (495)
T KOG2533|consen  341 ARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAIS  420 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhh
Confidence            67766666655555444 444334334444444444444555666778888888776655554 4444444445555555


Q ss_pred             HHHH-HHHhhccchhHHH
Q 026854          181 PLVA-VGLVTSCHLRLAV  197 (232)
Q Consensus       181 ~~i~-~~l~~~~g~~~~~  197 (232)
                      |.+. +.....++|...+
T Consensus       421 ~~~~~~~~ap~y~~~~~f  438 (495)
T KOG2533|consen  421 GQLFRSLDAPRYGWGAVF  438 (495)
T ss_pred             hhhcccccCcchhhhhHH
Confidence            5544 3333445666666

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.28  E-value=4.1e-11  Score=94.37  Aligned_cols=136  Identities=17%  Similarity=0.198  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVL  110 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  110 (232)
                      .+...+..++.....+....+.|.+.++..          +.+..+.+.......+..+++.+++|+++||+|||+.+..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  296 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQF----------GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLM  296 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHH
Confidence            444444455555555666777787775432          3777888888888888999999999999999999887777


Q ss_pred             HHHHHHHHHHHHHh--hh--hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhh
Q 026854          111 MFVLACIFLLPLVF--HQ--SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGG  177 (232)
Q Consensus       111 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~  177 (232)
                      +......+...+..  ..  +.+.......+..+..+...+..+...+|..| ++||++.|+.+..+++|+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       297 SFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence            76666555554443  22  44444444555556666667778888889887 589999999999888764

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.28  E-value=3.1e-10  Score=91.56  Aligned_cols=200  Identities=13%  Similarity=0.026  Sum_probs=140.4

Q ss_pred             hhhhcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCccccccCCCCch--hhHHHHHHHHhhhhhHHH
Q 026854           19 FFTLFS--RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSG-DSKCGSKVLHADKSKDN--SLYVDVFITSFAELPGLI   93 (232)
Q Consensus        19 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   93 (232)
                      ++++++  ++..+.+..+++.+++..+.++.+..|.+.+..+ ..+.++...+  .+++.  ...+......+...+.++
T Consensus       246 ~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~--~y~~gvr~G~~~l~~~s~~~~i~s~  323 (477)
T TIGR01301       246 FGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA--KYDDGVRAGAFGLMLNSVVLGITSI  323 (477)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445554  3345677778888888888888888777776542 2111110000  01100  123445556666677888


Q ss_pred             HHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHhhhh---------------------HHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           94 LSAIIVDKIG-RKLSMVLMFVLACIFLLPLVFHQS---------------------AVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        94 ~~g~l~dr~g-rr~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      +..++.+|+| ||+...++.++.++++....+.++                     .+..++...+.|+.......+.++
T Consensus       324 ~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfa  403 (477)
T TIGR01301       324 GMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFA  403 (477)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHH
Confidence            8899999999 467778887777777776665322                     255667778889999999999999


Q ss_pred             ccccccccc--hhhhhhHHHHHhhhhhhchhHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          152 YAPEIYPTS--ARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       152 ~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      ++++..|++  ..|..+|+.|.+..+.+.+.....|.+.+..|  ....+.+.++..+++++..++.+|+++.
T Consensus       404 l~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       404 LASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999954  44899999999999999999988888766665  3445666777778888888888887764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11462 putative transporter; Provisional

Probab=99.28  E-value=4e-10  Score=91.52  Aligned_cols=173  Identities=10%  Similarity=0.003  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh----hchH-HHHHHH
Q 026854           37 LFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK----IGRK-LSMVLM  111 (232)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr-~~~~~~  111 (232)
                      ..+.....+.....|+..+..+.-          +.+...++....+.-+...+.-++.|+++||    +||| +.++++
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt~~~----------Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g   86 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYTDIF----------GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFG   86 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhh----------CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHH
Confidence            333444444455555555554332          4889999999999999999999999999996    6865 455567


Q ss_pred             HHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHhhhhhhhhhccccccc-cchhhhhhHHHHHhhhhhhchhHHHH
Q 026854          112 FVLACIFLLPLVFHQS------AVVTTVLLFGVRMCATGTITVATIYAPEIYP-TSARTTGAGVASAVGRVGGMVCPLVA  184 (232)
Q Consensus       112 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~i~  184 (232)
                      .+.++++..++...++      ..+..+..++...+.........++.+|+.+ +++|++..++....+.+|+.+++.+.
T Consensus        87 ~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462         87 ALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777766654321      2334445555666777777788889999986 78999999999999998888887776


Q ss_pred             HHHhhcc-------chhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          185 VGLVTSC-------HLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       185 ~~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ..+.+..       +|.....+++++..++..+.+...+|..
T Consensus       167 ~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~  208 (460)
T PRK11462        167 MPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERV  208 (460)
T ss_pred             HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceecc
Confidence            5555443       3444555555555555555555555543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.24  E-value=1e-10  Score=93.01  Aligned_cols=141  Identities=16%  Similarity=0.130  Sum_probs=126.4

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      ..+...+........+.++.-++.+++.+|+|+-+++..+..+..+=.+...+.+|+|..+..-++.|+..+..+...-+
T Consensus       403 ~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~s  482 (618)
T KOG3762|consen  403 GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIIS  482 (618)
T ss_pred             CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHH
Confidence            45555567777788889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccchhhhhhHHHHHhh-hhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 026854          152 YAPEIYPTSARTTGAGVASAVG-RVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL  212 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~-~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  212 (232)
                      |++...|++.|+++.++..... .+|-.+|++++|.+.+.+|.+..|.++++.+++..+...
T Consensus       483 Y~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  483 YASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             HHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998776 799999999999999999999999988888776655443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.23  E-value=4.1e-11  Score=96.49  Aligned_cols=146  Identities=15%  Similarity=0.138  Sum_probs=111.3

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHh----hhchHHH-HHHHHHHHHHHHHHHHhh-h-------hHHHHHHHHHHH
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVD----KIGRKLS-MVLMFVLACIFLLPLVFH-Q-------SAVVTTVLLFGV  138 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~-~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~  138 (232)
                      .+....+....+.-+...+..++.|.++|    |+|||+. ++++....+++..++... +       ...+..+..++.
T Consensus        34 l~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~  113 (428)
T PF13347_consen   34 LSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILF  113 (428)
T ss_pred             CCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHH
Confidence            88889999999999999999999999999    7996654 556778888877777654 3       122334455555


Q ss_pred             HHHHhhhhhhhhhccccccc-cchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc-------chhHHHHHHHHHHHHHHHH
Q 026854          139 RMCATGTITVATIYAPEIYP-TSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC-------HLRLAVILFEVVFVLAIAS  210 (232)
Q Consensus       139 g~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-------g~~~~~~~~~~~~~~~~~~  210 (232)
                      .++.........++.+|+.+ +++|.+..+.......+|..+...+.+.+.+..       ++.....+.+++..+..++
T Consensus       114 ~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i  193 (428)
T PF13347_consen  114 DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLI  193 (428)
T ss_pred             HHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhh
Confidence            67777777888899999997 578999999998888888877777777666443       3666677777777777777


Q ss_pred             Hhccccc
Q 026854          211 SLLFPFE  217 (232)
Q Consensus       211 ~~~~~~e  217 (232)
                      ..+..+|
T Consensus       194 ~~~~~ke  200 (428)
T PF13347_consen  194 TFFFVKE  200 (428)
T ss_pred             hhheeee
Confidence            7777777

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.22  E-value=1.7e-09  Score=85.96  Aligned_cols=134  Identities=18%  Similarity=0.212  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhc-hHHHHHHHHHHH
Q 026854           37 LFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIG-RKLSMVLMFVLA  115 (232)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-rr~~~~~~~~~~  115 (232)
                      .++.....+-....+.|.++++.|           .+..+++...++..+..+++.+++|+++||.+ +|+.+.+..++.
T Consensus        10 ~~f~~f~~~G~~~p~~~~~L~~~G-----------~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~   78 (400)
T PF03825_consen   10 MYFLYFFAYGAFLPYLPLYLESRG-----------FSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLS   78 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence            344444444455567888888776           99999999999999999999999999999986 677777777777


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHH
Q 026854          116 CIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLV  183 (232)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  183 (232)
                      ++........++++.+....++..++..+..|...++..+...  +++.-.|-....+.+|-+++...
T Consensus        79 ~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~  144 (400)
T PF03825_consen   79 ALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA  144 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence            7776666667777777777777777777777777777777665  34555666777777776666544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.21  E-value=4e-09  Score=80.72  Aligned_cols=149  Identities=13%  Similarity=-0.001  Sum_probs=110.2

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      ++..++............+...+.|.++||+|||+.-+..+++..++.+... .++...+++.+++.|+.....++..-+
T Consensus        66 ~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~~~~~~L~~GRvlgGiaTSLLfS~FEs  144 (354)
T PF05631_consen   66 FSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-SSNYPVLLLGRVLGGIATSLLFSAFES  144 (354)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999999998888888888886544 467888999999999998888777766


Q ss_pred             cc-ccc----cccchhhhhhHHHHHh-hhhhhchhHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHHhcccccccCC
Q 026854          152 YA-PEI----YPTSARTTGAGVASAV-GRVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFPFETKGR  221 (232)
Q Consensus       152 ~~-~e~----~p~~~r~~~~~~~~~~-~~~g~~~~~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  221 (232)
                      +. .|.    +|++..+...+..... +.+-++.+..++-++.+..+  ...+|.....+..++.+++....+|+.+.
T Consensus       145 W~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  145 WMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence            54 443    4555445444444422 23344445555556666554  46788888888888888777777887654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.19  E-value=3e-09  Score=84.75  Aligned_cols=118  Identities=13%  Similarity=0.055  Sum_probs=83.4

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHH-HHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFV-LACIFLLPLVF--HQSAVVTTVLLFGVRMCATGTITV  148 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~  148 (232)
                      .+..+.++......++.++++++.+++.||.+++........ ...+.......  ..+.+.......+.+++.+...+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  319 (394)
T PRK11652        240 LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPL  319 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            677777877777788888888999999999884433322222 22122111111  223445555667777777777888


Q ss_pred             hhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc
Q 026854          149 ATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS  190 (232)
Q Consensus       149 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  190 (232)
                      ...+..|.+| +.++++.++.+....+|+.+++.+.+.+.+.
T Consensus       320 ~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        320 ATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            8888889887 5689999999999999999999999887655

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.19  E-value=1.9e-10  Score=90.37  Aligned_cols=172  Identities=12%  Similarity=0.093  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH
Q 026854           32 VLLWVLFFANAFSYYGAVLLTSKLSSG-DSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVL  110 (232)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  110 (232)
                      +.....++...+.+-....+.|.++++ .           |.+.++.+...++..+..++.+++.|.++||+|.||-++.
T Consensus        10 ~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~-----------GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~   78 (412)
T PF01306_consen   10 WWLSLFYFFYFFIWGIFLPFFPIWLTQVA-----------GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLW   78 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccc-----------CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHH
Confidence            333334444444433444445555543 3           3999999999999999999999999999999995554443


Q ss_pred             HHHHHH--HHHHHHHh-----hhhHHH-HHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHH
Q 026854          111 MFVLAC--IFLLPLVF-----HQSAVV-TTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPL  182 (232)
Q Consensus       111 ~~~~~~--~~~~~~~~-----~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~  182 (232)
                      ......  .+.+....     ..|.+. .++..+..++...+..|+.-+++.+.  .+..+.-.|=....+.+|.++++.
T Consensus        79 ~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~--sr~~~feYG~~R~wGSig~ai~s~  156 (412)
T PF01306_consen   79 FIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV--SRRNGFEYGRARMWGSIGFAIASL  156 (412)
T ss_dssp             HHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH--HHHHSS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH--HHHhcCCcchHHHHhhHHHHHHHH
Confidence            332222  22222211     112211 11111222222333334444433333  233455577788899999999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHhccccc
Q 026854          183 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  217 (232)
Q Consensus       183 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  217 (232)
                      ++|.+.+. +.+..+++......+..++.....|+
T Consensus       157 ~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~  190 (412)
T PF01306_consen  157 LAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPD  190 (412)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred             Hhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999875 55667777666555555555555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.15  E-value=2.9e-10  Score=90.65  Aligned_cols=186  Identities=14%  Similarity=0.111  Sum_probs=134.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR  104 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  104 (232)
                      +.+||..++..+..+.....++....-.-.|.++..         .+.+.+-.|+..+...++..++++..|+...|.+.
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD---------~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~  100 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLD---------PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGS  100 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcC---------CCCCcchhhHHHHHHHHHHHhcchhhcccccccCC
Confidence            456777777777777666655444322333443311         12667778999999999999999999999999986


Q ss_pred             -HHHHHHHHHHHHHHHHHHH-h---hh-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhc
Q 026854          105 -KLSMVLMFVLACIFLLPLV-F---HQ-SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGM  178 (232)
Q Consensus       105 -r~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~  178 (232)
                       |+.++.+.+++.++.++.. .   .+ ..+.+++.+++.|++. +.....-.|+++..-.++|.++++.......+|..
T Consensus       101 ~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~i  179 (488)
T KOG2325|consen  101 VKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGII  179 (488)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHH
Confidence             7888888888888877763 3   33 5677888899988776 44578889999988888999999988887778888


Q ss_pred             hhHHHHHHHhhcc--c-----------hhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          179 VCPLVAVGLVTSC--H-----------LRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       179 ~~~~i~~~l~~~~--g-----------~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      +||.+...+....  |           +..+-|+.++..++..++..++.+|..+
T Consensus       180 lGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  180 LGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            8877765543210  1           2345667777777777777777776543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.15  E-value=5.4e-09  Score=83.91  Aligned_cols=170  Identities=9%  Similarity=-0.114  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      |.++...+.........+....+.|.+.++..          +.+..+.++.......+.++++.+.+.+.+|.++++..
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~----------g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  287 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAG----------GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFI  287 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHH
Confidence            44444444455555566666677888876553          37888888877777778888888888776544443333


Q ss_pred             HHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHH
Q 026854          109 VLMFVLACIFLLPLV-----FHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLV  183 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  183 (232)
                      .....+..++...+.     ..++.+..++..++.+++.+...+......-+ -....+|++.++.+.....+...++..
T Consensus       288 ~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~  366 (413)
T PRK15403        288 WRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEI  366 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222221     12222223455556666666666665532211 112236899999999888888899999


Q ss_pred             HHHHhhccchhHHHHHHHHHHHHHHHH
Q 026854          184 AVGLVTSCHLRLAVILFEVVFVLAIAS  210 (232)
Q Consensus       184 ~~~l~~~~g~~~~~~~~~~~~~~~~~~  210 (232)
                      .+++.+. +....+....++..+....
T Consensus       367 ~g~~~~~-~~~~~~~~~~~~~~~~~~~  392 (413)
T PRK15403        367 GRWLWFN-GGRLPFHLLAVVAGVIVVF  392 (413)
T ss_pred             HHHHHHc-CCchHHHHHHHHHHHHHHH
Confidence            9988776 5555666555554444333

>TIGR00788 fbt folate/biopterin transporter

Probab=99.15  E-value=1.7e-10  Score=93.85  Aligned_cols=122  Identities=10%  Similarity=0.026  Sum_probs=102.9

Q ss_pred             CCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHH
Q 026854           71 KSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF----------HQSAVVTTVLLFGVRM  140 (232)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~  140 (232)
                      +.++...+......+++.+++..+.+++.+|++.|+++.++.++..++......          .++.+......++.++
T Consensus       284 G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~  363 (468)
T TIGR00788       284 PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEV  363 (468)
T ss_pred             CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHH
Confidence            589999999999999999999999999999999999999999888887654321          1223334445566777


Q ss_pred             HHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc
Q 026854          141 CATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH  192 (232)
Q Consensus       141 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g  192 (232)
                      ..+........++++..|++.+|+..++.++..++|..+++.+++.+.+..|
T Consensus       364 ~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       364 LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            7777777889999999999999999999999999999999999999998877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.14  E-value=3e-09  Score=85.53  Aligned_cols=138  Identities=20%  Similarity=0.194  Sum_probs=113.9

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchh
Q 026854           83 ITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSAR  162 (232)
Q Consensus        83 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r  162 (232)
                      ..++..++.++..|.++||+|||..+........+..+...+..  ++.++..-+. .+.....+...++++|....+.|
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~~~~l~-g~~~~~~s~~~a~vadis~~~~R  146 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFLLLGLS-GGFSAIFSVGFAYVADISSEEER  146 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhhhcccc-cchhhhhhhhhhheeeccchhHH
Confidence            34677888999999999999999999999988888877777654  3333322222 23345668889999999999999


Q ss_pred             hhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCCc
Q 026854          163 TTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGREL  223 (232)
Q Consensus       163 ~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  223 (232)
                      ....|+.+.....+..++|.+++.+.+..|....+.+..+...+..+....++||+..++.
T Consensus       147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~  207 (463)
T KOG2816|consen  147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE  207 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence            9999999999999999999999999999999999999999999999999999999865443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.12  E-value=1.2e-08  Score=77.96  Aligned_cols=158  Identities=12%  Similarity=-0.003  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 026854           44 SYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLV  123 (232)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  123 (232)
                      ........++.+.++.+           .+.+.+++..++..++....+++..++.+|+|.++.+..+.++..++..+=.
T Consensus        27 ~itsvgPLL~~Ir~~~g-----------ls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~   95 (395)
T COG2807          27 AITSVGPLLDEIRQDLG-----------LSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRS   95 (395)
T ss_pred             hhhhhhhhHHHHHHHhc-----------ccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            34455566777776666           9999999999999999999999999999999999999999988888777665


Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc-chhHHHHHHHH
Q 026854          124 FHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC-HLRLAVILFEV  202 (232)
Q Consensus       124 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-g~~~~~~~~~~  202 (232)
                      .. +...++....+.|.+.+..+...+..+-+.||++. +..+|++.....+++.+++.+...+.++. ||+....+.+.
T Consensus        96 ~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl  173 (395)
T COG2807          96 LG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWAL  173 (395)
T ss_pred             cc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHH
Confidence            55 55667777888899999999999999999998875 88899999999999999999998888887 79999888888


Q ss_pred             HHHHHHHHHhcc
Q 026854          203 VFVLAIASSLLF  214 (232)
Q Consensus       203 ~~~~~~~~~~~~  214 (232)
                      .+++..+..+..
T Consensus       174 ~allAl~~WlPq  185 (395)
T COG2807         174 LALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHHHHhhh
Confidence            888777665543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.05  E-value=1.5e-08  Score=80.73  Aligned_cols=177  Identities=14%  Similarity=0.068  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh----hch-HHH
Q 026854           33 LLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK----IGR-KLS  107 (232)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~gr-r~~  107 (232)
                      .-...-+.....+.....|+..+.++..          |.+...++....+.=+...+.-++.|.++||    +|| |+.
T Consensus        16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~----------Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~   85 (467)
T COG2211          16 GYGLGDFASNFAFGIVVLYLLFFYTDVF----------GLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPW   85 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhccc----------CCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHH
Confidence            3344455566666666777777776654          5899999999999899999999999999996    675 456


Q ss_pred             HHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHhhhhhhhhhccccccc-cchhhhhhHHHHHhhhhhhchh
Q 026854          108 MVLMFVLACIFLLPLVFHQ------SAVVTTVLLFGVRMCATGTITVATIYAPEIYP-TSARTTGAGVASAVGRVGGMVC  180 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~  180 (232)
                      ++.+.+..++...++...+      +....++...+.+.+....+....++.+|+.+ +++|.+..+.-.....+|..+.
T Consensus        86 lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~  165 (467)
T COG2211          86 LLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLV  165 (467)
T ss_pred             HHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677788888777777644      23455666677788888888888999999974 6889999999999999998888


Q ss_pred             HHHHHHHhhcc-------chhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          181 PLVAVGLVTSC-------HLRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       181 ~~i~~~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      ..+.+.+.+..       |++....+++++..+..+.+++-.+|..
T Consensus       166 ~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~  211 (467)
T COG2211         166 AVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERV  211 (467)
T ss_pred             HHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            88887776543       4555555666666666666666656654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.04  E-value=2.1e-08  Score=81.86  Aligned_cols=140  Identities=12%  Similarity=0.032  Sum_probs=105.4

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhch-----HHHH--HHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHH
Q 026854           77 LYVDVFITSFAELPGLILSAIIVDKIGR-----KLSM--VLMFVLACIFLLPLVF---------HQSAVVTTVLLFGVRM  140 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr-----r~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~  140 (232)
                      ..+..++..+.-++..++..++-.|.+|     +...  .++.++.+++...+.+         ..+.+++....++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            4566666666666666665544444443     2333  6677777777666553         3577888888899999


Q ss_pred             HHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccc
Q 026854          141 CATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  216 (232)
Q Consensus       141 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  216 (232)
                      +.....|...++..|..|++.||+.+|+......+|..+++.+.....+..++...+...++..++..++.++..|
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998887777667777777777777766666655444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.03  E-value=1.7e-08  Score=84.64  Aligned_cols=142  Identities=12%  Similarity=0.131  Sum_probs=109.3

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHH
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDK-IGRKLSMVLMFVLACIFLLPLVFHQS--------AVVTTVLLFGVRMCA  142 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~  142 (232)
                      .+...+...........-+..+++|+++|+ +||++.+.++.++..++..++.+...        ....++...+..++.
T Consensus        20 ~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~   99 (654)
T TIGR00926        20 FSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGT   99 (654)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhc
Confidence            667777777777777777888999999997 69999999999998888877766211        122445556667778


Q ss_pred             hhhhhhhhhccccccccc---hhhhhhHHHHHhhhhhhchhHHHHHHHhhcc-------chhHHHHHHHHHHHHHHHHHh
Q 026854          143 TGTITVATIYAPEIYPTS---ARTTGAGVASAVGRVGGMVCPLVAVGLVTSC-------HLRLAVILFEVVFVLAIASSL  212 (232)
Q Consensus       143 ~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-------g~~~~~~~~~~~~~~~~~~~~  212 (232)
                      |+.-+...+...|.++++   .|-+...+.+...++|+.+++.+.+++.+..       +|+..|.+.+++.+++.++..
T Consensus       100 GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       100 GGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             cccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence            888899999999988754   4678888999999999999999999987543       588888887777777665544


Q ss_pred             c
Q 026854          213 L  213 (232)
Q Consensus       213 ~  213 (232)
                      .
T Consensus       180 ~  180 (654)
T TIGR00926       180 A  180 (654)
T ss_pred             H
Confidence            3

>PRK09848 glucuronide transporter; Provisional

Probab=99.01  E-value=2.8e-08  Score=80.64  Aligned_cols=139  Identities=11%  Similarity=0.111  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh----chHHHH-HHH
Q 026854           37 LFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI----GRKLSM-VLM  111 (232)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----grr~~~-~~~  111 (232)
                      ..+.....+.....+++.|.++..          +.+..+.+.......+...+..++.|+++||.    |||+.. ..+
T Consensus        16 g~~~~~~~~~~~~~~l~~y~~~~~----------gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~   85 (448)
T PRK09848         16 GDVANNFAFAMGALFLLSYYTDVA----------GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFG   85 (448)
T ss_pred             chHHhHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHH
Confidence            344444444444444555554432          38889999999999999999999999999996    766644 555


Q ss_pred             HHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHhhhhhhhhhccccccc-cchhhhhhHHHHHhhh-----hhhc
Q 026854          112 FVLACIFLLPLVFHQ-------SAVVTTVLLFGVRMCATGTITVATIYAPEIYP-TSARTTGAGVASAVGR-----VGGM  178 (232)
Q Consensus       112 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~-----~g~~  178 (232)
                      .+...+....+...+       ...+......+.+.+.+...+...++..|+.+ +++|.+..++-....+     ++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~  165 (448)
T PRK09848         86 TAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFL  165 (448)
T ss_pred             HHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554544444432211       12223334445566666666666677777664 4678876665543333     3444


Q ss_pred             hhHHHHH
Q 026854          179 VCPLVAV  185 (232)
Q Consensus       179 ~~~~i~~  185 (232)
                      ++|.+.+
T Consensus       166 ~~p~i~~  172 (448)
T PRK09848        166 IGPSIKN  172 (448)
T ss_pred             HHHHHHH
Confidence            4555444

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.91  E-value=9.3e-08  Score=75.07  Aligned_cols=119  Identities=17%  Similarity=0.057  Sum_probs=91.0

Q ss_pred             CchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh------hHH--HHHHHHHHHHHHHhh
Q 026854           73 KDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQ------SAV--VTTVLLFGVRMCATG  144 (232)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~g~~~~~  144 (232)
                      +....-+...++.+.+++..+.+.|+.||+|-|...+++..+.+++..+-..+.      ..+  .......+.+...-.
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~F  156 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPF  156 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhH
Confidence            556667889999999999999999999999999999999999999888766622      222  333444444444433


Q ss_pred             hhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc
Q 026854          145 TITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC  191 (232)
Q Consensus       145 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  191 (232)
                      ......-...-+||+++|+++..+..+...+|..++..+.+.+..+.
T Consensus       157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            34444555667899999999999999998888888888877776654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.89  E-value=6.7e-08  Score=79.43  Aligned_cols=137  Identities=9%  Similarity=-0.055  Sum_probs=92.0

Q ss_pred             hHHHHHHHHhhhhhHHHHH----HHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHh
Q 026854           77 LYVDVFITSFAELPGLILS----AIIVDKIGRKLSMVLMFVLACIFLLPLVFHQS---------AVVTTVLLFGVRMCAT  143 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~----g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~  143 (232)
                      ..+..++..+..++..++.    +++.||.+.++.+.++..+.+++.+.+....+         .++.....++.+++..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            3445555555555555555    55555555667788888888888887766443         4567778888999999


Q ss_pred             hhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhh----------ccchhHHHHHHHHHHHHHHHHHhc
Q 026854          144 GTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVT----------SCHLRLAVILFEVVFVLAIASSLL  213 (232)
Q Consensus       144 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~  213 (232)
                      ...|...+++.+..|++.||+.+|+......+|..++..+......          ..+....|...++..++.+++.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998776666666665555432210          112445566666555544433333

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.87  E-value=2.3e-08  Score=78.43  Aligned_cols=184  Identities=16%  Similarity=0.111  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch-HHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR-KLS  107 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~  107 (232)
                      +++.+..+.+......+++....+...+...+           ++....+.......+++++++.+.|.+.||.+. |.+
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sg-----------Y~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~  334 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLALCPSG-----------YEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLT  334 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcccccc-----------CCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            56667777777777777777666664444444           566788888999999999999999999999874 455


Q ss_pred             HHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHH
Q 026854          108 MVLMFVLACIFLLPLVF----HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLV  183 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  183 (232)
                      +++......++...+..    ....+.+.....+.|++..+..|+..-+..|..-|..-++..|+.+..+.+.+++-..+
T Consensus       335 ~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~  414 (480)
T KOG2563|consen  335 TLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFI  414 (480)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHH
Confidence            55555554444322222    22334556666777888888889999999998655556778999999999999999999


Q ss_pred             HHHHhhccc----hhHHHHHHHHHHHHHHHHHhcccccccCCCc
Q 026854          184 AVGLVTSCH----LRLAVILFEVVFVLAIASSLLFPFETKGREL  223 (232)
Q Consensus       184 ~~~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  223 (232)
                      .+...+..+    ++..-+.......+..++..++.|+-++.+.
T Consensus       415 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~  458 (480)
T KOG2563|consen  415 MGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRA  458 (480)
T ss_pred             HHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence            888887766    4444455555566666666666555544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.76  E-value=3.2e-07  Score=75.20  Aligned_cols=139  Identities=12%  Similarity=-0.049  Sum_probs=97.0

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhhhchHH-------HHHHHHHHHHHHHHHHH-----h-----hhhHHHHHHHHHHHHH
Q 026854           78 YVDVFITSFAELPGLILSAIIVDKIGRKL-------SMVLMFVLACIFLLPLV-----F-----HQSAVVTTVLLFGVRM  140 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~g~  140 (232)
                      .+...+..+..++.+++.+++.||+++|+       -+.++.++.+++.+.+.     .     ..+.++.....++.++
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            34444555667778888999999999886       36666666666554321     1     1245667777888899


Q ss_pred             HHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhh----------ccchhHHHHHHHHHHHHHHHH
Q 026854          141 CATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVT----------SCHLRLAVILFEVVFVLAIAS  210 (232)
Q Consensus       141 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~----------~~g~~~~~~~~~~~~~~~~~~  210 (232)
                      +.+...+...+.+.+..|++.++.++|+.+....+|+.++..+......          .......|...++...+..++
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~  471 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV  471 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998888877754421          001234455555555555555


Q ss_pred             Hhcccc
Q 026854          211 SLLFPF  216 (232)
Q Consensus       211 ~~~~~~  216 (232)
                      .+...|
T Consensus       472 ~~~~~~  477 (489)
T PRK10207        472 MALMVP  477 (489)
T ss_pred             HHHHHH
Confidence            444333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.73  E-value=1.5e-06  Score=70.85  Aligned_cols=144  Identities=19%  Similarity=0.245  Sum_probs=103.8

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH-HHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 026854           77 LYVDVFITSFAELPGLILSAIIVDKIGRKLSMV-LMFVLACIFLLPLVFH--QSAVVTTVLLFGVRMCATGTITVATIYA  153 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~  153 (232)
                      .....++..+...+..++.|-++|+-|+||.++ +...+..++...+.+.  ++.+...++.++..++.........+++
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677788888899999999999998665554 4445555556655552  3334444555555667777788899999


Q ss_pred             ccccccchh--------------------------hhhhHHHHHhhhhhhchhHHHHHHHhhcc--------chhHHHHH
Q 026854          154 PEIYPTSAR--------------------------TTGAGVASAVGRVGGMVCPLVAVGLVTSC--------HLRLAVIL  199 (232)
Q Consensus       154 ~e~~p~~~r--------------------------~~~~~~~~~~~~~g~~~~~~i~~~l~~~~--------g~~~~~~~  199 (232)
                      +|+.+++.+                          ++..+.....+++|+.+.-.+.-.+....        ..+..+.+
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~  231 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI  231 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence            999998888                          99999999999999988776655443222        23566777


Q ss_pred             HHHHHHHHHHHHhcccccccC
Q 026854          200 FEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       200 ~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      .++..++..+..+++.||.++
T Consensus       232 ~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  232 VALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHhCCCCCC
Confidence            777777777777888787755

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.70  E-value=1.9e-06  Score=65.56  Aligned_cols=129  Identities=19%  Similarity=0.240  Sum_probs=95.9

Q ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhhhhhhhhhc
Q 026854           75 NSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQS--AVVTTVLLFGVRMCATGTITVATIY  152 (232)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~  152 (232)
                      ...++......+...++.++.|.+.||+|||+.+..+.....++.+...+..+  .+...+.+...|++.+...+...++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            35677888888888888899999999999998887777654444444444433  6667777777888888888999999


Q ss_pred             ccccccc-chhhhhhHHHHH-hhhhhhchhHHHHHHHhhc--cchhHHHHHHHHH
Q 026854          153 APEIYPT-SARTTGAGVASA-VGRVGGMVCPLVAVGLVTS--CHLRLAVILFEVV  203 (232)
Q Consensus       153 ~~e~~p~-~~r~~~~~~~~~-~~~~g~~~~~~i~~~l~~~--~g~~~~~~~~~~~  203 (232)
                      ..|..|. +.|+...+.... ...++..++|.+.+.+...  .+|+..+......
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            9999998 678888888887 5677888888777766554  4566544444333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.70  E-value=1.9e-06  Score=59.09  Aligned_cols=116  Identities=16%  Similarity=0.064  Sum_probs=93.1

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      .++........+......+++++.+.+.+++|.|+.++++.+...+-.... +.++.+.++....+.|++.+..++....
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~  112 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT  112 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence            344444556666777788888999999999999999999998887655443 3556677888888999999999999999


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV  188 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  188 (232)
                      ++.+..+++.|++-.++.......+.++|..+.-.+.
T Consensus       113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988888888877776655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.64  E-value=1.3e-06  Score=70.54  Aligned_cols=146  Identities=21%  Similarity=0.192  Sum_probs=105.4

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhh---c--hHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHH
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKI---G--RKLSMVLMFVLACIFLLPLVF----HQSAVVTTVLLFGVRMCA  142 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~---g--rr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~  142 (232)
                      .++.+.........+. ....++.|.++|-+   |  ||+-++++.++..++...+..    ..+.....+..++..++.
T Consensus        22 ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~  100 (433)
T PF03092_consen   22 LSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGY  100 (433)
T ss_pred             CCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence            7777766666555544 34578899999986   3  555566676666555554444    233444555556666677


Q ss_pred             hhhhhhhhhccccccc--cchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          143 TGTITVATIYAPEIYP--TSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       143 ~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      .....+.-+...|...  ++.|+.-.+..+....+|++++..+.|.+.+..+.+..+.+.+.+..+..+...+..+|.
T Consensus       101 a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~  178 (433)
T PF03092_consen  101 AFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER  178 (433)
T ss_pred             HHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence            7777888888888862  233888888999999999999999999999999988888888888877777777776663

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.64  E-value=5.8e-07  Score=53.92  Aligned_cols=68  Identities=10%  Similarity=0.059  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHH
Q 026854           36 VLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVL  114 (232)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~  114 (232)
                      ..++...........+.|.+.++.|           .+..+.+...++..+..+++.+++|+++||++|++..+.....
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~G-----------l~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLG-----------LSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3455555566667778888888776           9999999999999999999999999999999988877766544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.63  E-value=4.1e-06  Score=65.54  Aligned_cols=120  Identities=11%  Similarity=0.040  Sum_probs=103.6

Q ss_pred             CCCchhhHHHHHHHHhhhhhHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhhh
Q 026854           71 KSKDNSLYVDVFITSFAELPGLILSAIIVD-KIGRKLSMVLMFVLACIFLLPLVF---HQSAVVTTVLLFGVRMCATGTI  146 (232)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~  146 (232)
                      +.+..+..........+..++....|++.. |.++++...+++....++...+..   ..+.+.+....++.|++.|.+.
T Consensus       240 gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~  319 (403)
T PF03209_consen  240 GMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFT  319 (403)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHH
Confidence            489999999999999999999999998887 678888888888888877766555   4567778888899999999988


Q ss_pred             hhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc
Q 026854          147 TVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS  190 (232)
Q Consensus       147 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  190 (232)
                      ....+...++.+++..|..+|.....+.++..++..++|.+.|.
T Consensus       320 vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  320 VGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999988774

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.56  E-value=6e-06  Score=68.48  Aligned_cols=153  Identities=14%  Similarity=0.180  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH-HH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRK-LS  107 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-~~  107 (232)
                      |.+...++..+.....+|....+.|.........+       ..+....++......++..++.++.|.+..+++|- +.
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d-------~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~  382 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSD-------PISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQ  382 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-------CcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHH
Confidence            44555556666677777887777777654332000       01112456677777888889999999999998864 45


Q ss_pred             HHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          108 MVLMFVLACIFLLPLVF--HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      ++++..++.++.-++..  .++....+...++.+++.+..........+-..|++.-+++.|+..++..+|+.++..+..
T Consensus       383 li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  383 LIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            55666565554344433  3444455667778888888877777888888889999999999999999999999988876


Q ss_pred             HHh
Q 026854          186 GLV  188 (232)
Q Consensus       186 ~l~  188 (232)
                      .+.
T Consensus       463 ~I~  465 (599)
T PF06609_consen  463 AIF  465 (599)
T ss_pred             HHH
Confidence            544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.52  E-value=2.6e-06  Score=66.58  Aligned_cols=132  Identities=12%  Similarity=0.021  Sum_probs=91.7

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhc-----hHHHHHH-HHHHHHHHHHHHHh-----hh-------hHH----
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIG-----RKLSMVL-MFVLACIFLLPLVF-----HQ-------SAV----  129 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~~-~~~~~~~~~~~~~~-----~~-------~~~----  129 (232)
                      .+..-.+....+..+.+ +..+..|+.+|+.+     ||..+++ +......+.....+     ..       +.+    
T Consensus        12 vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~   90 (403)
T PF03209_consen   12 VPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLA   90 (403)
T ss_pred             cHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHH
Confidence            44455555555555444 46899999999988     7766554 44444443333322     12       121    


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHH
Q 026854          130 VTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVF  204 (232)
Q Consensus       130 ~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~  204 (232)
                      ...+...+.|.+.+...+...++++|..|+++|+++.++.+...-+|.+++..+.+.+.+.+......-+.....
T Consensus        91 ~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a  165 (403)
T PF03209_consen   91 LAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA  165 (403)
T ss_pred             HHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence            233445667777777888899999999999999999999999999999999999999998876555444444333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.47  E-value=8.5e-05  Score=60.30  Aligned_cols=153  Identities=8%  Similarity=0.007  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhH-HHHHHHHHhhhch
Q 026854           26 KLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPG-LILSAIIVDKIGR  104 (232)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~gr  104 (232)
                      ..+++++...+..++..+.++..-..-..+....          .+.......+.-+...+...+. .++.+++++|++|
T Consensus         4 ~E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~----------~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~   73 (472)
T TIGR00769         4 HELKKFLPLFLMFFCILFNYTILRDTKDTLVVTA----------KGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSK   73 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhheeecc----------cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            3456667777777777777666543333322110          0122244455555554544444 8889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-----h--------------------------hHHHHHHHHHHHHHHHhhhhh-hhhhc
Q 026854          105 KLSMVLMFVLACIFLLPLVFH-----Q--------------------------SAVVTTVLLFGVRMCATGTIT-VATIY  152 (232)
Q Consensus       105 r~~~~~~~~~~~~~~~~~~~~-----~--------------------------~~~~~~~~~~~~g~~~~~~~~-~~~~~  152 (232)
                      ++++-+..........+..+.     +                          +.|...+..+...+......+ +.|.+
T Consensus        74 ~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~f  153 (472)
T TIGR00769        74 EALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGF  153 (472)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998777665555544443331     0                          122222333334444444555 88999


Q ss_pred             cccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh
Q 026854          153 APEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV  188 (232)
Q Consensus       153 ~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  188 (232)
                      ++|.+..++-.+-.++....+++|..+++.+..++.
T Consensus       154 andi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       154 ANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PTZ00207 hypothetical protein; Provisional

Probab=98.44  E-value=1.8e-06  Score=71.69  Aligned_cols=180  Identities=8%  Similarity=0.025  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCccccccCCC-Cchh-hHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGD-SKCGSKVLHADKS-KDNS-LYVDVFITSFAELPGLILSAIIVDKIGR  104 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~gr  104 (232)
                      ...+|++++.+++..........-+.++.+.. +           . .+.+ .....++.++++.+|.+..|.++...-|
T Consensus       352 ~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g-----------~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~  420 (591)
T PTZ00207        352 TARLWCLLWSIFCCVGAHFVIIFNARFIYTALAG-----------EAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQK  420 (591)
T ss_pred             chhHHHHHHHHHHhhCchheeeecHHHHHHHhcC-----------CCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHh
Confidence            45677888888877666666655566666555 3           2 2221 1226778889999999999988833322


Q ss_pred             HH--------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhh
Q 026854          105 KL--------SMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVG  176 (232)
Q Consensus       105 r~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  176 (232)
                      |+        ..+....++.+..+++........+++..++.|++.|..+++.....+|+|. ++-|+-..+......+|
T Consensus       421 ~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pig  499 (591)
T PTZ00207        421 RRAEDRVPITIALFIPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLS  499 (591)
T ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHH
Confidence            22        2222223355555555554333578888899999999999999999999998 77666666655555566


Q ss_pred             hchh-HHHHHHHhhcc----------c---hhHHHHHHHHHHHHHHHHHhccccccc
Q 026854          177 GMVC-PLVAVGLVTSC----------H---LRLAVILFEVVFVLAIASSLLFPFETK  219 (232)
Q Consensus       177 ~~~~-~~i~~~l~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~e~~  219 (232)
                      +.+- -.++|.+.|+-          |   .+.++.+.++++..+.+....+.-+++
T Consensus       500 s~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r  556 (591)
T PTZ00207        500 AIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR  556 (591)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence            5554 44556666532          1   457888888888888777665544443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=8.7e-07  Score=68.75  Aligned_cols=138  Identities=14%  Similarity=0.031  Sum_probs=96.1

Q ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhc
Q 026854           75 NSLYVDVFITSFAELPGLILSAIIVDKIG--RKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIY  152 (232)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  152 (232)
                      -+.++...-..+...++..+.|.++||++  |-.....+.+..+.+....-+.++...+++-.+..+++.+...+.....
T Consensus       306 w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~  385 (464)
T KOG3764|consen  306 WEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPT  385 (464)
T ss_pred             cceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence            36677777788899999999999999999  4333334444555555555556666666665555555554443333333


Q ss_pred             cccccc---cc---hhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 026854          153 APEIYP---TS---ARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL  212 (232)
Q Consensus       153 ~~e~~p---~~---~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  212 (232)
                      ..++..   .+   .-|...++......+|..+||.++|.+.+..|..|...+.++...+-.-+..
T Consensus       386 l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  386 LGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             hHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            333332   22   5578888999999999999999999999999999888888887776654443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.30  E-value=1.5e-07  Score=69.90  Aligned_cols=120  Identities=13%  Similarity=0.117  Sum_probs=98.6

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDK-IGRKLSMVLMFVLACIFLLPLVF---HQSAVVTTVLLFGVRMCATGTIT  147 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~  147 (232)
                      .+.++..+..++++..+++-.+++|++.|| +|-|...++-+....++-+....   .+..|.+...+++.|++.-....
T Consensus        76 i~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAV  155 (459)
T KOG4686|consen   76 IEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAV  155 (459)
T ss_pred             cceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhh
Confidence            556667788888999999999999999997 67776666655555566555543   68889999999999998877778


Q ss_pred             hhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc
Q 026854          148 VATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC  191 (232)
Q Consensus       148 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  191 (232)
                      .-..++.-+|..++-+.++|+..+..++|+.+--.+.+++.+..
T Consensus       156 aQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  156 AQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             hhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence            88899999999999999999999999999988777777776643

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.26  E-value=2.7e-05  Score=66.01  Aligned_cols=152  Identities=11%  Similarity=0.110  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHh-hhhhHHHHHHHHHhhhc--hH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSF-AELPGLILSAIIVDKIG--RK  105 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g--rr  105 (232)
                      +.++...+..++.....+.+..|.|.+.++..          +.+..++++......+ +.+++.+++|+++||++  .|
T Consensus       330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~----------g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~  399 (633)
T TIGR00805       330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQY----------GISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVK  399 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHH
Confidence            45556666677777788888899999997543          4888888888777665 56899999999999998  55


Q ss_pred             HHHHHHHHHHHHHHHHHH------------------------------h-------hh----------------------
Q 026854          106 LSMVLMFVLACIFLLPLV------------------------------F-------HQ----------------------  126 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~------------------------------~-------~~----------------------  126 (232)
                      +.+..+.....++.+...                              -       ..                      
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC  479 (633)
T TIGR00805       400 KAAYFAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGC  479 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCC
Confidence            666666666555533311                              0       00                      


Q ss_pred             ------------------------------------h-HHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHH
Q 026854          127 ------------------------------------S-AVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVA  169 (232)
Q Consensus       127 ------------------------------------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  169 (232)
                                                          + ...+++..++..+............+-...|+++|+.+.|+.
T Consensus       480 ~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~  559 (633)
T TIGR00805       480 SMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQ  559 (633)
T ss_pred             CCccCCCCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHH
Confidence                                                0 011112222222222233344455566778999999999999


Q ss_pred             HHhhh-hhhchhHHHHHHHhhc
Q 026854          170 SAVGR-VGGMVCPLVAVGLVTS  190 (232)
Q Consensus       170 ~~~~~-~g~~~~~~i~~~l~~~  190 (232)
                      ....+ +|.+-+|.+.|+++|.
T Consensus       560 ~~~~rllg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       560 WLCMRVFATIPAPILFGLLIDV  581 (633)
T ss_pred             HHHHHHhcCCChhHHHhhhhhc
Confidence            98886 7889999999999985

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.24  E-value=8.8e-06  Score=62.86  Aligned_cols=95  Identities=18%  Similarity=0.176  Sum_probs=74.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc--------------
Q 026854          125 HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS--------------  190 (232)
Q Consensus       125 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~--------------  190 (232)
                      ..++..+++..++.+.+.+...+....+++++.|++.+++.+++...+..+|..++|.+.+.+...              
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~   86 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANA   86 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhH
Confidence            456778888889999999999999999999999999999999999999999999999999988742              


Q ss_pred             --cchhHHHHHHHHHHHHHH-HHHhccccccc
Q 026854          191 --CHLRLAVILFEVVFVLAI-ASSLLFPFETK  219 (232)
Q Consensus       191 --~g~~~~~~~~~~~~~~~~-~~~~~~~~e~~  219 (232)
                        ..|+.++++.+.+..+.. ++.+.-.||.+
T Consensus        87 ~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~  118 (310)
T TIGR01272        87 EAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ  118 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Confidence              246677775655544443 33344445543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.17  E-value=4.3e-05  Score=46.35  Aligned_cols=78  Identities=8%  Similarity=0.013  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 026854           42 AFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLP  121 (232)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  121 (232)
                      .+..+.+...+|...++.+           .+..+.++..+...++..+|.+...++.++.++++.+..+.+...+..+.
T Consensus         5 GigRFayTplLP~M~~~~~-----------ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~   73 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADGG-----------LSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAA   73 (85)
T ss_pred             hhHHHHHHhHhHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            4556777788999988776           99999999999999999999999999999988899999999999999998


Q ss_pred             HHhhhhHHH
Q 026854          122 LVFHQSAVV  130 (232)
Q Consensus       122 ~~~~~~~~~  130 (232)
                      +.+.++.+.
T Consensus        74 ma~~~~~~~   82 (85)
T PF06779_consen   74 MALTHSFWL   82 (85)
T ss_pred             HHHHhchHH
Confidence            888776554

Note that many members are hypothetical proteins.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.13  E-value=2.3e-05  Score=60.78  Aligned_cols=121  Identities=17%  Similarity=0.087  Sum_probs=101.3

Q ss_pred             CCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 026854           70 DKSKDNSLYVDVFITSFAELPGLILSAIIVDKIG--RKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTIT  147 (232)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  147 (232)
                      .+++..+.+...+..++...+......+..||..  -+..+.....++.-..+..........++....+..+......+
T Consensus       292 fg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt  371 (451)
T KOG2615|consen  292 FGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVT  371 (451)
T ss_pred             cCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhH
Confidence            4588889898888888888888888888888877  66677777777777777777777777777777777777777778


Q ss_pred             hhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc
Q 026854          148 VATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS  190 (232)
Q Consensus       148 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  190 (232)
                      ....+.....|+++||+..|+..+.+.++-.+||.+.|.+..+
T Consensus       372 ~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  372 CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            8888899999999999999999999999999999999887654

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.09  E-value=0.00068  Score=53.87  Aligned_cols=142  Identities=15%  Similarity=0.108  Sum_probs=101.8

Q ss_pred             CCchhhH-HHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 026854           72 SKDNSLY-VDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVAT  150 (232)
Q Consensus        72 ~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (232)
                      .+..+.. -+.-+..-..++..++...+.|.+|.|++++++.+...+...++.+.++...+-+..++.|...+. ....+
T Consensus        37 ~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~  115 (412)
T PF01770_consen   37 FTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYY  115 (412)
T ss_pred             CCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHH
Confidence            5555543 222233445666778889999999999999999999999999998999998888888888887744 56677


Q ss_pred             hccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc--cchhHHHHHHHHHHHHHHHHHhcc
Q 026854          151 IYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS--CHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       151 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      +++=-..|+++--++.+......-+|..++..++-.+...  ........+......++.+..+++
T Consensus       116 sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  116 SYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL  181 (412)
T ss_pred             HHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            7777777887777888888888777777777777666552  234444444444445555555544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.07  E-value=0.00032  Score=57.48  Aligned_cols=111  Identities=14%  Similarity=0.012  Sum_probs=78.6

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhch--HH-----HHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHH
Q 026854           77 LYVDVFITSFAELPGLILSAIIVDKIGR--KL-----SMVLMFVLACIFLLPLVFH---------QSAVVTTVLLFGVRM  140 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~  140 (232)
                      ..+..++..+..++.+++.+++=.|.+|  |.     =+.++.++.+++.+.+...         .+.+++....++..+
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            4566677777777778777777666633  21     1566777777776655431         255667777788888


Q ss_pred             HHhhhhhhhhhccccccccchhhhhhHHHHHhh-hhhhchhHHHHHHH
Q 026854          141 CATGTITVATIYAPEIYPTSARTTGAGVASAVG-RVGGMVCPLVAVGL  187 (232)
Q Consensus       141 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~g~~~~~~i~~~l  187 (232)
                      +.-...|+..+.++++.|++.||+.+|...... .+|..++..+.+..
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888889999999999999999999999986643 45555555555443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.05  E-value=1.3e-05  Score=63.55  Aligned_cols=120  Identities=21%  Similarity=0.207  Sum_probs=73.5

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH-------HHHHHHHHHHHH----HHHHHHh-hhhHHHHHHHHHHHH
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRK-------LSMVLMFVLACI----FLLPLVF-HQSAVVTTVLLFGVR  139 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-------~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~g  139 (232)
                      .+.....+...+...++.+|.+++|.++||+-|+       +.--+...+.+.    ...+... ..+.....+..++.|
T Consensus       280 ~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g  359 (493)
T KOG1330|consen  280 FDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVG  359 (493)
T ss_pred             CccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3444556677778889999999999999995332       111111111111    1111111 222333333444444


Q ss_pred             HHHhh-hhhhhhhccccccccchhhhhhHHHHHhhh-hhhchhHHHHHHHhhcc
Q 026854          140 MCATG-TITVATIYAPEIYPTSARTTGAGVASAVGR-VGGMVCPLVAVGLVTSC  191 (232)
Q Consensus       140 ~~~~~-~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~g~~~~~~i~~~l~~~~  191 (232)
                      ..... .++...-+..|+.|++.|.++.++...... .|..-+|++.|.+.|+.
T Consensus       360 ~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  360 ETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             HHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            44333 345566678899999999999999988775 56666677999998864

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=0.0003  Score=56.70  Aligned_cols=109  Identities=14%  Similarity=0.133  Sum_probs=81.8

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHh------------------hhhHHHHHHHH
Q 026854           77 LYVDVFITSFAELPGLILSAIIVDK---IGRKLSMVLMFVLACIFLLPLVF------------------HQSAVVTTVLL  135 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~g~l~dr---~grr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~  135 (232)
                      ........+++.+++....+.+.+|   +||++.+.++..+..+..++...                  .++.....+..
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            3455556678888888888888876   68888888888887777766654                  11344566777


Q ss_pred             HHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHH
Q 026854          136 FGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVG  186 (232)
Q Consensus       136 ~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  186 (232)
                      ++.|++-.......+.++++.. ++.|.++.++.-.-..+++.++-+..+.
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            8888888888899999999999 6678888888888777777666555553

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.02  E-value=6.5e-07  Score=73.94  Aligned_cols=144  Identities=12%  Similarity=0.053  Sum_probs=2.5

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-------------------------
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQ-------------------------  126 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-------------------------  126 (232)
                      .+.++.++..+...++..+..++..++.+|-.|-+.+-++.++++++.++..+.+                         
T Consensus        35 l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c  114 (539)
T PF03137_consen   35 LSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLC  114 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccc
Confidence            8999999999999999999999999999998777888888888888877665400                         


Q ss_pred             -------------------------hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhH
Q 026854          127 -------------------------SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCP  181 (232)
Q Consensus       127 -------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~  181 (232)
                                               ....+++..++.|++....+++..+|+=|..+++.-+.-.|+.+....+|-.+|=
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf  194 (539)
T PF03137_consen  115 DSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGF  194 (539)
T ss_dssp             -------------------------------------SSS----------------------------------------
T ss_pred             cccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHH
Confidence                                     0123445667788888888999999999999999988889998888888877776


Q ss_pred             HHHHHHhhc---------------------cc-hhHHHHHHHHHHHHHHHHHhccc
Q 026854          182 LVAVGLVTS---------------------CH-LRLAVILFEVVFVLAIASSLLFP  215 (232)
Q Consensus       182 ~i~~~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~~  215 (232)
                      .+++...+.                     .| ||..|++.+.+.++..+..+.+.
T Consensus       195 ~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP  250 (539)
T PF03137_consen  195 LLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP  250 (539)
T ss_dssp             --------------------------------------------------------
T ss_pred             HHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            666655431                     12 66667777777777777666664

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.99  E-value=0.00015  Score=57.08  Aligned_cols=145  Identities=12%  Similarity=0.072  Sum_probs=102.6

Q ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHhhhh--H-HHHHHHHHHHHHHHhhhhhhhh
Q 026854           75 NSLYVDVFITSFAELPGLILSAIIVDKIGRK-LSMVLMFVLACIFLLPLVFHQS--A-VVTTVLLFGVRMCATGTITVAT  150 (232)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~g~~~~~~~~~~~  150 (232)
                      +-.+...++..+...+-+++.|.++|+.|+| +.+-....+..++...+.+.++  + +...++..+..++.........
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            3445666777788888889999999999955 5555555666666666666433  3 3444555666677777788899


Q ss_pred             hccccccccchhhhhhHHHHHhhhhhhchhHHHHHHH--h----------------hccchhHHHHHHHHHHHHHHHHHh
Q 026854          151 IYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGL--V----------------TSCHLRLAVILFEVVFVLAIASSL  212 (232)
Q Consensus       151 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l--~----------------~~~g~~~~~~~~~~~~~~~~~~~~  212 (232)
                      +++.+..+++.-++..++.+..+++|+.+.-.+.-..  .                +....+.++.+.++..++..+-.+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            9999999999889999999999998887665443111  1                122346677788888888877777


Q ss_pred             ccccccc
Q 026854          213 LFPFETK  219 (232)
Q Consensus       213 ~~~~e~~  219 (232)
                      +..++..
T Consensus       218 ~~v~~~~  224 (438)
T COG2270         218 LNVHDAE  224 (438)
T ss_pred             hcccccc
Confidence            7776654

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.96  E-value=7.4e-05  Score=59.33  Aligned_cols=109  Identities=11%  Similarity=0.016  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhh--h-------hHHHHHHHHHHHHHHHhhhhhhhhhccccccccc---hhhhhhHHHHHhh
Q 026854          106 LSMVLMFVLACIFLLPLVFH--Q-------SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTS---ARTTGAGVASAVG  173 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~  173 (232)
                      ++++++.++..++.+++..+  +       +...+++...+.+++.|+.-|...++.+|.++++   .|.+...+.+...
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            46677777777777774442  1       2245677777888999999999999999999765   4677888889999


Q ss_pred             hhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          174 RVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       174 ~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      ++|+.+++.+.+++.++.||...|.+.++..+++.+..+.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999888888777665544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.87  E-value=3.2e-05  Score=61.32  Aligned_cols=154  Identities=11%  Similarity=0.055  Sum_probs=99.8

Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHh
Q 026854           21 TLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVD  100 (232)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  100 (232)
                      +..++++.+.++.+....+...+++-.-..+.|.|.+..|           .+....+..-...-+..++.+++.|..+|
T Consensus        24 ~~~~ps~~~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lG-----------vphk~~S~iw~~gPi~G~~vQP~vG~~SD   92 (498)
T KOG0637|consen   24 DLSRPSRLRKLISVASIAAGVQFGWALELSYLTPYLQSLG-----------VPHKWSSIIWLCGPLSGLLVQPLVGSASD   92 (498)
T ss_pred             cccCCcchHHHHHHHHHHHHHHHHHHHHhccccHHHHHcC-----------CCcccccccccccccccceeccccccccc
Confidence            3333333366666666777777777777778888888777           44344344444455667788899999999


Q ss_pred             h----hchHHHHH-HHHHHHHHHHHHHHhhhhH-----------------HHHHHHHHHHHHHHhhhhhhhhhccccccc
Q 026854          101 K----IGRKLSMV-LMFVLACIFLLPLVFHQSA-----------------VVTTVLLFGVRMCATGTITVATIYAPEIYP  158 (232)
Q Consensus       101 r----~grr~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p  158 (232)
                      |    +||||..+ .+.....++.+++.+..+.                 ...++...+.-+........+-+++.|+..
T Consensus        93 rc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~  172 (498)
T KOG0637|consen   93 RCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLAR  172 (498)
T ss_pred             ccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhcc
Confidence            6    78777655 4455556666666552221                 112222233334455667888999999997


Q ss_pred             cchhhh-hhHHHHHhhhhhhchhHHHHH
Q 026854          159 TSARTT-GAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       159 ~~~r~~-~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      .+++.+ +.+.......+|+.+|-..++
T Consensus       173 ~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  173 GDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             ChhhhhccchhHHHHHHhcceeeeeccc
Confidence            777777 888888888888877755554

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.87  E-value=0.00015  Score=61.19  Aligned_cols=146  Identities=12%  Similarity=0.075  Sum_probs=114.5

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-------------------------
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQ-------------------------  126 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-------------------------  126 (232)
                      ++..+.+++...+-++..+...+..+..-|.-|-+.+-++.++++++.++..+.+                         
T Consensus       129 i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s  208 (735)
T KOG3626|consen  129 ISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLS  208 (735)
T ss_pred             CCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccc
Confidence            7777888888888999999999999999998888888899999988888776510                         


Q ss_pred             -----------------h---------HH-HHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhch
Q 026854          127 -----------------S---------AV-VTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMV  179 (232)
Q Consensus       127 -----------------~---------~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  179 (232)
                                       .         .+ .+++..++.|++....++...+|+=|...++.-..-.|+.+....+|-++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPai  288 (735)
T KOG3626|consen  209 FCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAI  288 (735)
T ss_pred             hhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHH
Confidence                             0         12 34456678888888889999999999998888888899988888888777


Q ss_pred             hHHHHHHHhhcc-------------------chhHHHHHHHHHHHHHHHHHhccccc
Q 026854          180 CPLVAVGLVTSC-------------------HLRLAVILFEVVFVLAIASSLLFPFE  217 (232)
Q Consensus       180 ~~~i~~~l~~~~-------------------g~~~~~~~~~~~~~~~~~~~~~~~~e  217 (232)
                      |=.+++.+...+                   .||..|++.+.+.++..+..+++.++
T Consensus       289 GfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~  345 (735)
T KOG3626|consen  289 GFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKE  345 (735)
T ss_pred             HHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            777777665321                   16677888888888888877777443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.87  E-value=0.0011  Score=53.47  Aligned_cols=125  Identities=14%  Similarity=-0.003  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---
Q 026854           47 GAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLV---  123 (232)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---  123 (232)
                      ++...+..|++..|           .+....+..-....+.++.+.++..++.+|+|..+.-+++......+..+..   
T Consensus       276 sf~~lmt~yl~~~G-----------~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~  344 (432)
T PF06963_consen  276 SFGGLMTAYLKSQG-----------YSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSF  344 (432)
T ss_pred             cCcHHHHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Confidence            34445566666656           8899999999999999999999999999999987776666654443333222   


Q ss_pred             -hhh------hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHH
Q 026854          124 -FHQ------SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPL  182 (232)
Q Consensus       124 -~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~  182 (232)
                       ...      +...+.....+.-++.=++--...-++.|..|+++||+..|.-+...++...+.-.
T Consensus       345 ~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  345 WAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             hcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence             111      12223333344444444555677788999999999999999999998887755533

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.85  E-value=0.00011  Score=59.43  Aligned_cols=123  Identities=11%  Similarity=0.040  Sum_probs=87.5

Q ss_pred             CCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHH
Q 026854           70 DKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVF----------HQSAVVTTVLLFGVR  139 (232)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g  139 (232)
                      .+++....+....+..++.++|..+.....-+..-|+++..+.++..+..+.-..          .++.+....-.++..
T Consensus       250 p~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~  329 (433)
T PF03092_consen  250 PHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEE  329 (433)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHH
Confidence            3477777777777788888888888887777778788877777666555443221          112222222233344


Q ss_pred             HHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc
Q 026854          140 MCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH  192 (232)
Q Consensus       140 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g  192 (232)
                      +.....+-....+++|+.|+..-|+..++..+..++|..++..++..+.+..+
T Consensus       330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44444455566779999999999999999999999999999999998887665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.83  E-value=0.00043  Score=56.26  Aligned_cols=120  Identities=13%  Similarity=0.115  Sum_probs=101.4

Q ss_pred             CCCCchhhHHHHHHHHhhhhhHHHHHH-HHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhh
Q 026854           70 DKSKDNSLYVDVFITSFAELPGLILSA-IIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITV  148 (232)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (232)
                      ++.+..+.+...+.......++..+.. .+...+|-|+....|.....+......+.++.|..+....+.. ......+.
T Consensus       272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~-~~~~~~pa  350 (463)
T KOG2816|consen  272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVA-LAGIVFPA  350 (463)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHH-hhcchhHH
Confidence            358888888888888888888888777 7788899888999999999999999999888888776665554 44567788


Q ss_pred             hhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc
Q 026854          149 ATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS  190 (232)
Q Consensus       149 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  190 (232)
                      ..+..+-+.+++++|++.++...+..+.++++|.+.+.+...
T Consensus       351 ~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  351 IRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             HHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            899999999999999999999999999999999999877543

>PRK03612 spermidine synthase; Provisional

Probab=97.79  E-value=0.0099  Score=49.42  Aligned_cols=136  Identities=17%  Similarity=0.088  Sum_probs=74.9

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHH-HHH-HHHHHHHHHhhh-----hHHHHHHHHHHHHHHHhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLM-FVL-ACIFLLPLVFHQ-----SAVVTTVLLFGVRMCATG  144 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~-~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~  144 (232)
                      .+....+...+++..+..+|+.+++++.++.-|+...+-. ..+ ..++..++....     .....+...++.++..|.
T Consensus        47 ~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~  126 (521)
T PRK03612         47 DSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGM  126 (521)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666667777788888888888888776443333221111 111 111111111111     111222333445566666


Q ss_pred             hhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHh-hccchhHHHHHHHHHHHHHH
Q 026854          145 TITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLV-TSCHLRLAVILFEVVFVLAI  208 (232)
Q Consensus       145 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~-~~~g~~~~~~~~~~~~~~~~  208 (232)
                      ..|....+..+... +.-+...|-.+....+|+++|+++.+++. ...|.....++.+.+.++.+
T Consensus       127 ~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        127 EIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            66665555443322 12356688889999999999999988665 46676655555555444333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.72  E-value=0.0019  Score=54.89  Aligned_cols=152  Identities=13%  Similarity=0.137  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHh-hhhhHHHHHHHHHhhhc--hH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSF-AELPGLILSAIIVDKIG--RK  105 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g--rr  105 (232)
                      +.+....+...+....+.++..|+|.|++.+.          +.+...+........+ +..+|.+++|++..|+.  .|
T Consensus       392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qf----------g~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r  461 (735)
T KOG3626|consen  392 PIFMLVVLASVIESLAITGYITFLPKYLETQF----------GISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSAR  461 (735)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHc----------CCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHH
Confidence            34555566666777788888999999997654          5777787777755544 45688889999999874  45


Q ss_pred             HHHHHHHHHHHHHHHH---HHh----------------------h-h---------------------------------
Q 026854          106 LSMVLMFVLACIFLLP---LVF----------------------H-Q---------------------------------  126 (232)
Q Consensus       106 ~~~~~~~~~~~~~~~~---~~~----------------------~-~---------------------------------  126 (232)
                      ....+.++...+..+.   ..+                      . .                                 
T Consensus       462 ~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpCh  541 (735)
T KOG3626|consen  462 GAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCH  541 (735)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhh
Confidence            5544444444443332   221                      0 0                                 


Q ss_pred             ---------h----------------------------------HHHHHHHHHHHHHHHhhhhhhhhhccccccccchhh
Q 026854          127 ---------S----------------------------------AVVTTVLLFGVRMCATGTITVATIYAPEIYPTSART  163 (232)
Q Consensus       127 ---------~----------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~  163 (232)
                               +                                  ...+++..++..+..+...+....++-...|+++|.
T Consensus       542 AGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks  621 (735)
T KOG3626|consen  542 AGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKS  621 (735)
T ss_pred             hCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhch
Confidence                     0                                  011222222223333333455666677889999999


Q ss_pred             hhhHHHHHhhh-hhhchhHHHHHHHhhc
Q 026854          164 TGAGVASAVGR-VGGMVCPLVAVGLVTS  190 (232)
Q Consensus       164 ~~~~~~~~~~~-~g~~~~~~i~~~l~~~  190 (232)
                      .++|+..++.+ +|.+-+|.+.|+++|.
T Consensus       622 ~AlG~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  622 FALGFQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             hhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence            99999988886 7888899999999985

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.72  E-value=0.009  Score=49.08  Aligned_cols=153  Identities=12%  Similarity=0.092  Sum_probs=91.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHH-HHhhhhhHHHHHHHHHhhhc
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFI-TSFAELPGLILSAIIVDKIG  103 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~g  103 (232)
                      +..+++++.+.+..++..+.+...-..-..+..          ..  .........=.. ..-+.++...+..+++||++
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvv----------t~--~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s   87 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYTILRDLKDTLVV----------TA--QGAEVIPFLKVWGVLPVAILFTILYSKLSNRLS   87 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEE----------ec--CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            455677777777777666654443222211110          00  122222222222 22245566778899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHh---------hh----------------------hHHHHHHHHHHHHHHHhhhhh-hhhh
Q 026854          104 RKLSMVLMFVLACIFLLPLVF---------HQ----------------------SAVVTTVLLFGVRMCATGTIT-VATI  151 (232)
Q Consensus       104 rr~~~~~~~~~~~~~~~~~~~---------~~----------------------~~~~~~~~~~~~g~~~~~~~~-~~~~  151 (232)
                      |.+++-+..........+.++         .+                      +.|...+..+..-.......+ ..|.
T Consensus        88 ~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~  167 (491)
T PF03219_consen   88 REKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWG  167 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999877666555544433332         00                      112222222222233223333 5799


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhh
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVT  189 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  189 (232)
                      ++.|.++.++-.+-.++....+++|.+++..+..++.+
T Consensus       168 fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  168 FANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.0023  Score=51.72  Aligned_cols=113  Identities=13%  Similarity=0.041  Sum_probs=92.6

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      .+.........+......+++++.+.+.|++|.|+.+.++............+ .|.+..+....+.|++.+..+...-.
T Consensus        47 i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~  125 (461)
T KOG3098|consen   47 ISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGG  125 (461)
T ss_pred             cCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccce
Confidence            34444455577788888999999999999999999999999887776666554 45667788888999999888899999


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      +++|..+++.+.+-.++.......+.++|..+..
T Consensus       126 ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~  159 (461)
T KOG3098|consen  126 YLTSNSTRETIERNISIFWAIGQSSLIIGGIILF  159 (461)
T ss_pred             ehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence            9999999999999999999888877777755543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.56  E-value=0.0063  Score=48.46  Aligned_cols=133  Identities=14%  Similarity=0.124  Sum_probs=84.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 026854           78 YVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIY  157 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  157 (232)
                      +.....-.+..++..+++.++.+|+.-+.=...+..++.++++...++++.+.-++...+.++..+..-.....+ +..+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence            445555566777888889999999874433445556777778888888888877777888887776665555554 4455


Q ss_pred             ccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHHhcccc
Q 026854          158 PTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFPF  216 (232)
Q Consensus       158 p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~  216 (232)
                      |+.    ..+-..+..+.++.+|+.....+.+ .|  .+..+.....+..+..+..++.+|
T Consensus       141 ~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~  196 (402)
T PF02487_consen  141 GKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP  196 (402)
T ss_pred             Ccc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            542    2333344445667777777665555 44  455666666666555544444444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.53  E-value=0.008  Score=50.38  Aligned_cols=177  Identities=14%  Similarity=0.083  Sum_probs=114.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh-h
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLS-SGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK-I  102 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~  102 (232)
                      ...|+..........+....+++...-+-.|+ ...+           .+...+.-......-......+++++++|- +
T Consensus        33 ~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~-----------~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~  101 (571)
T KOG1237|consen   33 TGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELH-----------ASGGGAANNVNAFGGTQFLLPLLGAFLADSFL  101 (571)
T ss_pred             echhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhc-----------cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            34455444444445555566655532222222 2222           444555555555556667778899999997 5


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhh----------------------h---HHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 026854          103 GRKLSMVLMFVLACIFLLPLVFHQ----------------------S---AVVTTVLLFGVRMCATGTITVATIYAPEIY  157 (232)
Q Consensus       103 grr~~~~~~~~~~~~~~~~~~~~~----------------------~---~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  157 (232)
                      ||-+++.++..+..++..++....                      +   ...++....+..++.++.-+...++-+|-+
T Consensus       102 gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQf  181 (571)
T KOG1237|consen  102 GRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQF  181 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhccccc
Confidence            899999998888887766554410                      0   012333344445567777888899999998


Q ss_pred             c---c-chhh--hhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 026854          158 P---T-SART--TGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL  212 (232)
Q Consensus       158 p---~-~~r~--~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  212 (232)
                      +   + +.+.  .-+.+.+...+.|..++..+.-++.+..+|...|.+..+...++.++.+
T Consensus       182 d~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  182 DELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             CccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence            8   2 2222  5566777777899999988888888888998888887777766655443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.37  E-value=0.006  Score=48.57  Aligned_cols=111  Identities=18%  Similarity=0.199  Sum_probs=72.2

Q ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           75 NSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLV---FHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      ....+....+.++-+++.--...+  |+.|-+.+.+...+..+..+.-.   +.++.|...+..+..|+..|..+...+.
T Consensus       281 ~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~  358 (402)
T PF02487_consen  281 DQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY  358 (402)
T ss_pred             HHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            344455666666655554322111  33333332222222222222222   2567788888888899999999999999


Q ss_pred             ccccccccchhhhhhHHHHHhhhhhhchhHHHHHHH
Q 026854          152 YAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGL  187 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  187 (232)
                      .+.|-.|+++|-.++|.....-.+|..++..++-++
T Consensus       359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999999999988888888777776544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.36  E-value=0.055  Score=43.84  Aligned_cols=138  Identities=11%  Similarity=0.049  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHH----HHHHHH--h--hh----hHHHHHHH---HHHHHH
Q 026854           76 SLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACI----FLLPLV--F--HQ----SAVVTTVL---LFGVRM  140 (232)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~----~~~~~~--~--~~----~~~~~~~~---~~~~g~  140 (232)
                      -.......-.+..++.++..|...||..|.+....+.+..=+    +...+.  +  ..    +.+....+   ..+.+ 
T Consensus        39 ~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-  117 (432)
T PF06963_consen   39 PVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLG-  117 (432)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHH-
Confidence            344555556677888889999999999998876555433222    222211  1  11    11221111   11111 


Q ss_pred             HHhhhhhhhh--hcccccc------ccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 026854          141 CATGTITVAT--IYAPEIY------PTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL  212 (232)
Q Consensus       141 ~~~~~~~~~~--~~~~e~~------p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  212 (232)
                      +..-..+...  +.=-|+.      +++...+..+...-+--+...++|.+.|.+.+..+......+.++..++...+=+
T Consensus       118 ~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy  197 (432)
T PF06963_consen  118 AIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEY  197 (432)
T ss_pred             HHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence            1111112222  2222332      2333444455555555588999999999999988888888777777777665544


Q ss_pred             cc
Q 026854          213 LF  214 (232)
Q Consensus       213 ~~  214 (232)
                      ++
T Consensus       198 ~~  199 (432)
T PF06963_consen  198 FL  199 (432)
T ss_pred             HH
Confidence            33

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.36  E-value=0.0029  Score=49.56  Aligned_cols=146  Identities=18%  Similarity=0.131  Sum_probs=76.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHh----
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVD----  100 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----  100 (232)
                      +.-++.++.+.+++..+....-... .+|.+++.-+           .+-++.+.......  -.---+++..+.|    
T Consensus        27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~-----------vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~   92 (510)
T KOG3574|consen   27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKG-----------VSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYS   92 (510)
T ss_pred             hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCC-----------cchhhhhhhhhhhh--HHHHHHHHHhhhHHHHH
Confidence            3455677777788887776644444 7898886443           55555443332221  1122468888999    


Q ss_pred             -hhchHHHHH-HHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhH
Q 026854          101 -KIGRKLSMV-LMFVLACIFLLPLVFH-----------QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAG  167 (232)
Q Consensus       101 -r~grr~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~  167 (232)
                       |+||||.-+ -+..+.+..+..+...           ++........++.-+....--...-.+.-.+..+++-|.+..
T Consensus        93 k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST  172 (510)
T KOG3574|consen   93 KRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAST  172 (510)
T ss_pred             HhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhH
Confidence             999887543 3444445555544441           122222222223322222222344555555666666665554


Q ss_pred             HHHHhhhhhhchhHHHH
Q 026854          168 VASAVGRVGGMVCPLVA  184 (232)
Q Consensus       168 ~~~~~~~~g~~~~~~i~  184 (232)
                      -.....+.|.+++-.+.
T Consensus       173 ~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  173 CQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             HHHHHHhhhHHhhccee
Confidence            44444455555554443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.32  E-value=5.1e-05  Score=62.93  Aligned_cols=152  Identities=17%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHh-hhhhHHHHHHHHHhhhc--hHH
Q 026854           30 TTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSF-AELPGLILSAIIVDKIG--RKL  106 (232)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g--rr~  106 (232)
                      .++...+..........++..+.|.|++.+.          +.+.+++.+......+ +..+|.+++|++..|+.  .|.
T Consensus       306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF----------~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~  375 (539)
T PF03137_consen  306 VFMCLILAGVFESFIVSGFATFLPKYLESQF----------GLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARG  375 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHH
Confidence            3444444555566667788889999997654          4677776666655444 67789999999999974  455


Q ss_pred             HHHHHHHHHHHHHHH---HHh-------------hh----------------------------------h----HHHHH
Q 026854          107 SMVLMFVLACIFLLP---LVF-------------HQ----------------------------------S----AVVTT  132 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~---~~~-------------~~----------------------------------~----~~~~~  132 (232)
                      .+....+...+..+.   ..+             ..                                  +    ...+.
T Consensus       376 ~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl  455 (539)
T PF03137_consen  376 AAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFL  455 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHH
Confidence            544444444433332   111             00                                  0    01111


Q ss_pred             HHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhh-hhhchhHHHHHHHhhcc
Q 026854          133 VLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR-VGGMVCPLVAVGLVTSC  191 (232)
Q Consensus       133 ~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~g~~~~~~i~~~l~~~~  191 (232)
                      +..++..+..+..........-...|+++|+.|.|+.....+ +|.+-+|.+.|.++|..
T Consensus       456 ~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  456 ILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            222222223333334444555677899999999999998886 78889999999999864

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.24  E-value=0.015  Score=47.20  Aligned_cols=141  Identities=15%  Similarity=-0.018  Sum_probs=93.7

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhchH-------HHHHHHHHHHHHHHHHHHh-----h-----hhHHHHHHHHHHHH
Q 026854           77 LYVDVFITSFAELPGLILSAIIVDKIGRK-------LSMVLMFVLACIFLLPLVF-----H-----QSAVVTTVLLFGVR  139 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr-------~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~g  139 (232)
                      ..+..++..+.-++.+++..++..|.++|       .-+-++..+++.+.+.+..     .     .+.++++...++..
T Consensus       326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s  405 (498)
T COG3104         326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS  405 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            35666777777778888888888775544       1233444444444444433     1     24567777788888


Q ss_pred             HHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHH------HhhccchhHHHHHHHHHHHHHHHHHhc
Q 026854          140 MCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVG------LVTSCHLRLAVILFEVVFVLAIASSLL  213 (232)
Q Consensus       140 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~------l~~~~g~~~~~~~~~~~~~~~~~~~~~  213 (232)
                      ++.-...|+..+++....|++..+..+++.......++.++..+.+.      ..+.......|+..+....+..+....
T Consensus       406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~  485 (498)
T COG3104         406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL  485 (498)
T ss_pred             HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999999998877777776666666552      223334445666666666665555544


Q ss_pred             cccc
Q 026854          214 FPFE  217 (232)
Q Consensus       214 ~~~e  217 (232)
                      ..|+
T Consensus       486 ~~~~  489 (498)
T COG3104         486 LSPK  489 (498)
T ss_pred             hhHH
Confidence            4343

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.0014  Score=48.97  Aligned_cols=152  Identities=12%  Similarity=-0.045  Sum_probs=86.0

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      +...+++.......-..++...+.|.++||-|||+.-+.-++-..++++.- .++++-.+.+.+.+.|+.....++..-+
T Consensus        69 FgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK-hSpqYkVLmVGR~LGGiaTsLLFSaFEs  147 (454)
T KOG4332|consen   69 FGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK-HSPQYKVLMVGRVLGGIATSLLFSAFES  147 (454)
T ss_pred             ccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh-cCCceEEEeehhhhhhHHHHHHHHHHHH
Confidence            556666666655555667777888999999999986544443333333221 2455566778888888877666665554


Q ss_pred             c-cccccc-----cchhhhhhHHHHHhh-hhhhchhHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHhcccccccCCC
Q 026854          152 Y-APEIYP-----TSARTTGAGVASAVG-RVGGMVCPLVAVGLVTSC--HLRLAVILFEVVFVLAIASSLLFPFETKGRE  222 (232)
Q Consensus       152 ~-~~e~~p-----~~~r~~~~~~~~~~~-~~g~~~~~~i~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  222 (232)
                      + +.|.-.     .+--....+=...++ .+-++++...+-.+.+.+  |...+|-..+.+..++..+..--..|.-+++
T Consensus       148 WliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdp  227 (454)
T KOG4332|consen  148 WLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDP  227 (454)
T ss_pred             HHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCCh
Confidence            3 455532     221112222222222 244444444445555544  5556666666666666655555556666554


Q ss_pred             ch
Q 026854          223 LK  224 (232)
Q Consensus       223 ~~  224 (232)
                      .+
T Consensus       228 s~  229 (454)
T KOG4332|consen  228 SE  229 (454)
T ss_pred             hh
Confidence            43

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.85  E-value=0.2  Score=40.97  Aligned_cols=154  Identities=13%  Similarity=0.101  Sum_probs=96.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHh-hhhhHHHHHHHHHhhhc
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSF-AELPGLILSAIIVDKIG  103 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g  103 (232)
                      +..++.++...+..++..+.++.+-..-..+...            ...+......=...-+ ++++..++..++.++..
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~------------~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt   90 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYNLLRSLKDSLVVT------------RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILT   90 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEee------------cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcC
Confidence            4456777777777777776655553333322211            1223333444444444 56778888899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHh---------hhh-----------------------HHHHHHHHHHHHHHHhhhhh-hhh
Q 026854          104 RKLSMVLMFVLACIFLLPLVF---------HQS-----------------------AVVTTVLLFGVRMCATGTIT-VAT  150 (232)
Q Consensus       104 rr~~~~~~~~~~~~~~~~~~~---------~~~-----------------------~~~~~~~~~~~g~~~~~~~~-~~~  150 (232)
                      |.+++-+.........++.++         .++                       .|...+.....-.......+ ..|
T Consensus        91 ~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw  170 (509)
T COG3202          91 REKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFW  170 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHH
Confidence            988876665555544444433         011                       12222333333333333333 678


Q ss_pred             hccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhc
Q 026854          151 IYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTS  190 (232)
Q Consensus       151 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  190 (232)
                      ....|.+..++-.+-.++.+...+++..++..+..++.++
T Consensus       171 ~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         171 QFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8899999999999999999999999999999888888764

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.71  E-value=0.00096  Score=54.36  Aligned_cols=76  Identities=12%  Similarity=0.045  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHH-H
Q 026854           38 FFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLA-C  116 (232)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~-~  116 (232)
                      ++......-.+...++.|.+.+|           .+..+.+..+..--+..+++.+++|+++||+.+|+.++++..+. .
T Consensus        20 ~~~~~~~~g~l~pll~vy~kQLG-----------l~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v   88 (618)
T KOG3762|consen   20 YLFFGARFGSLFPLLAVYFKQLG-----------LNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV   88 (618)
T ss_pred             eeeeeecccccchHHHHHHHHcC-----------CCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            33333344455667788887777           99999999999999999999999999999998766666555544 4


Q ss_pred             HHHHHHHh
Q 026854          117 IFLLPLVF  124 (232)
Q Consensus       117 ~~~~~~~~  124 (232)
                      .+.+++.+
T Consensus        89 ~a~fll~f   96 (618)
T KOG3762|consen   89 TATFLLVF   96 (618)
T ss_pred             HHHHheee
Confidence            44444444

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.67  E-value=0.022  Score=46.50  Aligned_cols=102  Identities=9%  Similarity=-0.032  Sum_probs=73.0

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhhhchH--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 026854           78 YVDVFITSFAELPGLILSAIIVDKIGRK--LSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPE  155 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e  155 (232)
                      +..-++..+.+.++++..|++-.++.+-  ..+-+..++.+...+++...++.|..++..++.+.......++...-++.
T Consensus       301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~  380 (511)
T TIGR00806       301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS  380 (511)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666777888899987777542  33334445555556666778899999999888888888888888888888


Q ss_pred             ccccchhhhhhHHHHHhhhhhhch
Q 026854          156 IYPTSARTTGAGVASAVGRVGGMV  179 (232)
Q Consensus       156 ~~p~~~r~~~~~~~~~~~~~g~~~  179 (232)
                      ....+.-|...|+.++..-+-+.+
T Consensus       381 ~L~~~~~aLvFGiNtfvAl~LQti  404 (511)
T TIGR00806       381 SLSKELCALVFGINTFVATALKTI  404 (511)
T ss_pred             HhcccceEEEEecHHHHHHHHHHh
Confidence            887777788888877766544433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.42  E-value=0.028  Score=45.70  Aligned_cols=108  Identities=9%  Similarity=0.098  Sum_probs=69.3

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHh------------hhhHHHHHHHHHHHHHHHh
Q 026854           77 LYVDVFITSFAELPGLILSAIIVDKIGRK-LSMVLMFVLACIFLLPLVF------------HQSAVVTTVLLFGVRMCAT  143 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr-~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~  143 (232)
                      .-....+++++..+|..+..+.. .-++| +.+.+..+.=.+..-+..+            .++.+...+..++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            34566677888888887665431 11222 1222222222222222111            1355667777889999999


Q ss_pred             hhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHH
Q 026854          144 GTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAV  185 (232)
Q Consensus       144 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  185 (232)
                      ...+....+.++..++++|-.+..+......+|-.+|..+.-
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            989999999999999999988888887777777777766543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.39  E-value=0.0024  Score=51.91  Aligned_cols=64  Identities=19%  Similarity=0.228  Sum_probs=50.0

Q ss_pred             hhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 026854          145 TITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAI  208 (232)
Q Consensus       145 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~  208 (232)
                      ......+..+|...++.+++..++.......+..++|.+........|.+....+.....++..
T Consensus       405 ~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~  468 (488)
T KOG2325|consen  405 ISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVA  468 (488)
T ss_pred             ccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHH
Confidence            3455677788999999999999999999999999999999988888887755555444444333

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.15  E-value=0.24  Score=39.83  Aligned_cols=126  Identities=12%  Similarity=0.034  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH--HHHHHHHH
Q 026854           40 ANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV--LMFVLACI  117 (232)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~--~~~~~~~~  117 (232)
                      ....+++....|...+-++...        .+....--|..-....+.+.++++..|++..++.+-.-+.  ....+.+.
T Consensus       258 ~atcgy~qv~nYvQ~LW~~v~~--------~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~  329 (412)
T PF01770_consen  258 FATCGYYQVINYVQSLWDTVPP--------SDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAG  329 (412)
T ss_pred             HHHhHHHHHHHHHHHHHHhcCC--------CCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHH
Confidence            3444555555565555544310        0122333356666677778888899999977777644333  34445556


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhh
Q 026854          118 FLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVG  173 (232)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  173 (232)
                      ..+.+...++.+..++..++.+.......++...-++.....+.-|..+|+.....
T Consensus       330 ~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~A  385 (412)
T PF01770_consen  330 LLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVA  385 (412)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHH
Confidence            66667778888888888887777776666776666666666666566666655544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=95.70  E-value=0.45  Score=36.98  Aligned_cols=115  Identities=12%  Similarity=0.166  Sum_probs=69.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR  104 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  104 (232)
                      +...|.++.+..........+.+..........+.+               +  .......+.-+.++++.+.+.+++|-
T Consensus        25 ~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg---------------~--~sl~~~y~~l~~s~m~~~~~Ir~~g~   87 (390)
T KOG3097|consen   25 LGILKNVLILSIAFLLTFTAYLGLQNLQTSVNYDLG---------------T--VSLGALYLSLIDSSMFMPLLIRFLGT   87 (390)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc---------------c--chhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            345566666666666666666666555444443333               1  11222344555667777799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 026854          105 KLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIY  157 (232)
Q Consensus       105 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  157 (232)
                      |+++.++..........- .-+.+..++......|++.+..++.--++++++-
T Consensus        88 K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   88 KWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             HHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            999888776654432221 2334445556667777777777766666666664

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=95.60  E-value=0.21  Score=37.33  Aligned_cols=97  Identities=13%  Similarity=0.037  Sum_probs=45.8

Q ss_pred             HHHHHHhhhhhHHHHHHHHHhh-hchHHHHH----HHHHHHHHHHHHHHh-h----hhHHHHHHHHHHHHHHHhhhhhhh
Q 026854           80 DVFITSFAELPGLILSAIIVDK-IGRKLSMV----LMFVLACIFLLPLVF-H----QSAVVTTVLLFGVRMCATGTITVA  149 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~----~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~g~~~~~~~~~~  149 (232)
                      ...+...+..+|.+..|..... +.||+.+.    .+.+...++.+.... .    .+...+.++.++.|.+.=+..++.
T Consensus       146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~Vi  225 (267)
T PF07672_consen  146 FQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVI  225 (267)
T ss_pred             HHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3344444555666666766654 45555433    222222333222211 1    123445566666666665555555


Q ss_pred             hhccccc--cccchhhhhhHHHHHhhhhh
Q 026854          150 TIYAPEI--YPTSARTTGAGVASAVGRVG  176 (232)
Q Consensus       150 ~~~~~e~--~p~~~r~~~~~~~~~~~~~g  176 (232)
                      .-..-|.  ..|+.-|.-.|+...++.+.
T Consensus       226 L~lPhEyK~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  226 LNLPHEYKGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             hcChhhhcCCCcceehhHHHHHHHHHHHH
Confidence            5444443  23344455555554444443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.27  E-value=0.071  Score=43.05  Aligned_cols=167  Identities=9%  Similarity=-0.065  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--CCCCccc----cccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSG-D--SKCGSKV----LHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK  101 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr  101 (232)
                      |....+++...++.+..+.+..|...+.-+ .  |+++-++    .+.++-....-.+-..+..+...+.+...-++.||
T Consensus       279 r~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~  358 (498)
T KOG0637|consen  279 RPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRK  358 (498)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555566666666666666555555422 1  2222111    00111112223355667777888889999999999


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------------------hhhhhhhhhccccccccc
Q 026854          102 IGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCA---------------------TGTITVATIYAPEIYPTS  160 (232)
Q Consensus       102 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---------------------~~~~~~~~~~~~e~~p~~  160 (232)
                      +|-|+.++.+.....++.-......+.+.....+...|+-.                     ...+.+.++..+......
T Consensus       359 ~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~s  438 (498)
T KOG0637|consen  359 FGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNS  438 (498)
T ss_pred             cCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCccccccccccccccccccCc
Confidence            99554444444323333333332222222222222222111                     112223344433333232


Q ss_pred             hh--hhhhHHHHHhhhhhhchhHHHHHHHhhccchhH
Q 026854          161 AR--TTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRL  195 (232)
Q Consensus       161 ~r--~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~  195 (232)
                      .|  |...|+.+....+.+++.....|.+.+..|...
T Consensus       439 g~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~  475 (498)
T KOG0637|consen  439 GLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGN  475 (498)
T ss_pred             cCCCCceeeeeeeeeeehhheeeccccchhhhcCCcc
Confidence            33  444555566666777777777777777765443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=94.62  E-value=0.29  Score=38.91  Aligned_cols=58  Identities=14%  Similarity=0.082  Sum_probs=47.5

Q ss_pred             HHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccch
Q 026854          136 FGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHL  193 (232)
Q Consensus       136 ~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~  193 (232)
                      .+.+.+....+....+..+++.|+..-|+-+.+.+...++|+-.-..+..++.|..++
T Consensus       377 ~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv  434 (510)
T KOG3574|consen  377 AFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV  434 (510)
T ss_pred             HHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence            4444555555666777889999999999999999999999999999999999886543

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.85  E-value=0.018  Score=44.58  Aligned_cols=104  Identities=15%  Similarity=0.166  Sum_probs=3.7

Q ss_pred             HHHHHHhhhhhHHHHHHHHHhhh-chHHHHHHHHHHHHHH---HHHHH----------hhhhHHHHHHHHHHHHHHHhhh
Q 026854           80 DVFITSFAELPGLILSAIIVDKI-GRKLSMVLMFVLACIF---LLPLV----------FHQSAVVTTVLLFGVRMCATGT  145 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~~~g~~~~~~  145 (232)
                      ....++++..+|..+.++..=+- .+|++. +..+.=.+.   .+...          ..++.+...+..++.++..|..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            45568899999999888743221 244333 322222211   11111          1234456667788889999988


Q ss_pred             hhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHH
Q 026854          146 ITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA  184 (232)
Q Consensus       146 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~  184 (232)
                      .+....+.++..++++|..+-.+......+|-.+|..+.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             -HHHH----------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999888877777777777776666554

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.73  E-value=0.55  Score=35.66  Aligned_cols=133  Identities=12%  Similarity=0.009  Sum_probs=73.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhhhchH--HHHHHHHHHHHHHHHHHHh----h---hhHHHHHHHHHHHHHHHhhhhhh
Q 026854           78 YVDVFITSFAELPGLILSAIIVDKIGRK--LSMVLMFVLACIFLLPLVF----H---QSAVVTTVLLFGVRMCATGTITV  148 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~g~~~~~~~~~  148 (232)
                      +...+.+.++.++|+-+..++..|-..|  ..+.+...+......+...    +   .++..-.+..++.-.+.|.++|.
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS  364 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS  364 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence            4556666777777777777776664433  3444444444443333222    1   12223345555666778888999


Q ss_pred             hhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 026854          149 ATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS  210 (232)
Q Consensus       149 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  210 (232)
                      ..-+-++..|.+.|++.+.+...--++..-++-+..-.-....+-+..|-+...+..++.+.
T Consensus       365 imkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  365 IMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            99999999999999987766544433322222111000001123445566666665555443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=93.39  E-value=0.14  Score=39.40  Aligned_cols=180  Identities=13%  Similarity=0.174  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCccc---cccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh--ch
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSG-DSKCGSKV---LHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI--GR  104 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--gr  104 (232)
                      ....++...|++..|..+..-...+..+ .++.++..   ....+-...+.+.+...-.+...+..+......||+  |.
T Consensus        14 ~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~   93 (409)
T KOG3880|consen   14 AVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFGF   93 (409)
T ss_pred             chHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccch
Confidence            3444555666776655443333333322 22222221   122222333345555555667778888889999986  55


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHH
Q 026854          105 KLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA  184 (232)
Q Consensus       105 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~  184 (232)
                      |..  +...+.+.+.++.+++++.+.-+....+..++.|.. -+.+.-.+..+|+..-   .++ ......++.+|..-.
T Consensus        94 Ri~--~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlG-EiTFL~lss~Y~~~~i---~~W-SSGTGgAGliGa~SY  166 (409)
T KOG3880|consen   94 RIA--LVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLG-EITFLALSSRYPSIVI---AGW-SSGTGGAGLIGASSY  166 (409)
T ss_pred             HHH--HHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcc-eeehhhhhccCCCcee---ccc-cCCCCcchhhhhhHH
Confidence            533  344556666667777777777666666666655433 3333334444443321   111 222223444555544


Q ss_pred             HHHhh--ccchhHHHHHHHHHHHHHHHHHhccccc
Q 026854          185 VGLVT--SCHLRLAVILFEVVFVLAIASSLLFPFE  217 (232)
Q Consensus       185 ~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~e  217 (232)
                      ..+.+  ....+.+.++...+.++.+...++.+++
T Consensus       167 a~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  167 AFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             HHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence            44444  3356778888887777776666666543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=93.27  E-value=0.53  Score=38.77  Aligned_cols=40  Identities=10%  Similarity=0.032  Sum_probs=21.1

Q ss_pred             hhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHH
Q 026854          148 VATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGL  187 (232)
Q Consensus       148 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  187 (232)
                      ..-.+.-.+..++.++.|..-.....+.|-+++-.++-.+
T Consensus       138 AVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  138 AVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL  177 (544)
T ss_pred             eeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence            3444555556677777654443333456666555444433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=93.18  E-value=3.6  Score=34.21  Aligned_cols=56  Identities=14%  Similarity=0.065  Sum_probs=45.3

Q ss_pred             HHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc
Q 026854          136 FGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC  191 (232)
Q Consensus       136 ~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  191 (232)
                      ++..+.....+....+.-+.+.+|..-|+-+.+.|+..|+|+-.-..+.-++.|.+
T Consensus       413 ~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  413 VLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            34444555556677778889999999999999999999999999988888887753

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=92.89  E-value=0.33  Score=38.84  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=63.6

Q ss_pred             HHHHHH-HHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHHHHHhhhhh
Q 026854           78 YVDVFI-TSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLV---------FHQSAVVTTVLLFGVRMCATGTIT  147 (232)
Q Consensus        78 ~~~~~~-~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~  147 (232)
                      ...... .++...+|.+...++-++= ||...+. ..+=.+..-++.         ...+.++......+.|+..|-..+
T Consensus       285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~-v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts  362 (406)
T KOG1479|consen  285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIP-VLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS  362 (406)
T ss_pred             HHHHHHHhHHHHHhhhhhhhcccCCC-CceehHH-HHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence            344444 6788888877666665553 3333222 222222111111         134567778888899999999999


Q ss_pred             hhhhccccccccchhhhhhHHHHHhhhhhhchhHH
Q 026854          148 VATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPL  182 (232)
Q Consensus       148 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~  182 (232)
                      +...+.++-.|++++-.+-.+....-..|-..|..
T Consensus       363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~  397 (406)
T KOG1479|consen  363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL  397 (406)
T ss_pred             heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999888766555555554555544443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=92.73  E-value=0.71  Score=36.32  Aligned_cols=162  Identities=14%  Similarity=0.051  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH--HHHHHHHHHHH
Q 026854           40 ANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKL--SMVLMFVLACI  117 (232)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~--~~~~~~~~~~~  117 (232)
                      ....++|....|...+-++.. ++        ....--+..=.+..+.+.++.+..|.+.-++.|..  ++.++....+.
T Consensus       245 l~scg~~QV~nY~Q~LW~~~~-~~--------~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~ag  315 (433)
T KOG3810|consen  245 LASCGYYQVTNYTQILWKEVA-PN--------PANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAG  315 (433)
T ss_pred             HhhchhHHHHHHHHHHHHhhC-CC--------chhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhh
Confidence            344455556556555554332 11        11111233334455667788888898887777653  34444455555


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc-----
Q 026854          118 FLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH-----  192 (232)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g-----  192 (232)
                      ..+.+...++.|..++..++.........++...-+++....+.-|..+|+..++.-+-..+...+   ..|..|     
T Consensus       316 llf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~i  392 (433)
T KOG3810|consen  316 LLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDI  392 (433)
T ss_pred             hhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCc
Confidence            555666677888888888777777767777777777777777777777777666553333222221   223211     


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHhc
Q 026854          193 ------LRLAVILFEVVFVLAIASSLL  213 (232)
Q Consensus       193 ------~~~~~~~~~~~~~~~~~~~~~  213 (232)
                            +...|.+.+++.++.....+.
T Consensus       393 r~Q~~~Y~~Yf~v~~~i~~~~~~~~~~  419 (433)
T KOG3810|consen  393 RTQFVVYSSYFIVLGVIFLIGFGIEYL  419 (433)
T ss_pred             ceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence                  223466666666666554443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.35  E-value=8.4  Score=31.15  Aligned_cols=28  Identities=4%  Similarity=-0.024  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 026854           32 VLLWVLFFANAFSYYGAVLLTSKLSSGD   59 (232)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (232)
                      +..++...+....+..+..-.+.+.++.
T Consensus        21 ~i~~llGiG~LlpWN~fiTa~~y~~~~~   48 (406)
T KOG1479|consen   21 LIFLLLGIGTLLPWNMFITASDYYYYRF   48 (406)
T ss_pred             HHHHHHhcccccchHhhhccHHHHHhhc
Confidence            3444444555556666666666666544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.81  E-value=12  Score=30.78  Aligned_cols=32  Identities=13%  Similarity=0.006  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhccccccccc
Q 026854          128 AVVTTVLLFGVRMCATGTITVATIYAPEIYPTS  160 (232)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  160 (232)
                      .+...+..++.|++.+...+....+.+ .+|++
T Consensus       106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~  137 (437)
T TIGR00939       106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPST  137 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH
Confidence            344445556667777666677777666 55554

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=88.30  E-value=1.2  Score=35.15  Aligned_cols=99  Identities=22%  Similarity=0.146  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHH
Q 026854           90 PGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVA  169 (232)
Q Consensus        90 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  169 (232)
                      +.-++.=.+.|...-|++++.-.+.......++.+.++.+.+-+.-++.|... +.....++++=+..+++++-++.|.+
T Consensus        57 v~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~t-AaEIAYysYIYs~Vd~~~Yqrvt~y~  135 (433)
T KOG3810|consen   57 VGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPAT-AAEIAYYSYIYSKVDPEMYKRVTGYC  135 (433)
T ss_pred             HHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHH-HHHHhhhheeeeecCHHHHHHHHHHh
Confidence            44445557889988898888877777777777777888887777777776654 34566788888888999999999998


Q ss_pred             HHhhhhhhchhHHHHHHHhh
Q 026854          170 SAVGRVGGMVCPLVAVGLVT  189 (232)
Q Consensus       170 ~~~~~~g~~~~~~i~~~l~~  189 (232)
                      ....-.|-..+...+-.+.+
T Consensus       136 RaA~L~g~~~g~vlaQlLvs  155 (433)
T KOG3810|consen  136 RAAFLVGKFVGSVLAQLLVS  155 (433)
T ss_pred             HHHHHHHhHHHhHHHHHHhh
Confidence            88877777777666665554

>PRK10263 DNA translocase FtsK; Provisional

Probab=87.62  E-value=25  Score=33.11  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=13.9

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchH
Q 026854           83 ITSFAELPGLILSAIIVDKIGRK  105 (232)
Q Consensus        83 ~~~~~~~~~~~~~g~l~dr~grr  105 (232)
                      +.+.++.+|..+...+..-+|--
T Consensus        60 V~Nl~GiVGA~LAD~L~~LFGl~   82 (1355)
T PRK10263         60 IHNLGGMPGAWLADTLFFIFGVM   82 (1355)
T ss_pred             cccccchHHHHHHHHHHHHHhHH
Confidence            34566666666666666666643

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.26  E-value=9.4  Score=24.34  Aligned_cols=32  Identities=13%  Similarity=0.046  Sum_probs=20.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhh-chHHHHHHHH
Q 026854           81 VFITSFAELPGLILSAIIVDKI-GRKLSMVLMF  112 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~  112 (232)
                      .+.-.++.++.....||+.||+ |-++..++.+
T Consensus        48 lssefIsGilVGa~iG~llD~~agTsPwglIv~   80 (116)
T COG5336          48 LSSEFISGILVGAGIGWLLDKFAGTSPWGLIVF   80 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            3344566666677789999996 4555444433

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=82.07  E-value=7  Score=26.80  Aligned_cols=35  Identities=11%  Similarity=0.065  Sum_probs=26.0

Q ss_pred             hhhhhhhhccccccccchhhhhhHHHHHhhhhhhc
Q 026854          144 GTITVATIYAPEIYPTSARTTGAGVASAVGRVGGM  178 (232)
Q Consensus       144 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~  178 (232)
                      +..++.|..++-...++..|+..|+-..-.+++-+
T Consensus       110 gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~  144 (153)
T PF11947_consen  110 GLLGISYGILSASWDPEREGSLLGWEEFKRNWGRM  144 (153)
T ss_pred             HHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHH
Confidence            44567777788778888789999988777666543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=80.69  E-value=19  Score=30.39  Aligned_cols=24  Identities=13%  Similarity=0.232  Sum_probs=12.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhch
Q 026854           81 VFITSFAELPGLILSAIIVDKIGR  104 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~g~l~dr~gr  104 (232)
                      .....+.+.+++..++++-..+|.
T Consensus       303 i~~y~~~~~iaGy~S~~~yk~~~g  326 (521)
T PF02990_consen  303 IILYALTSFIAGYVSARLYKSFGG  326 (521)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHcCC
Confidence            334444555555555555555553

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=80.45  E-value=13  Score=23.99  Aligned_cols=41  Identities=17%  Similarity=0.231  Sum_probs=26.5

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 026854           77 LYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACI  117 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  117 (232)
                      .+.......++..++..+.+.+.|..|.+..+.+......+
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA  129 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence            34555566677777778888888877766655554444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.91
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.9
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.9
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.87
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.86
2xut_A	524	Proton/peptide symporter family protein; transport	99.83
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.82
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.8
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.78
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.77
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.63
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.54
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.47
2xut_A	524	Proton/peptide symporter family protein; transport	99.28
2g9p_A	26	Antimicrobial peptide latarcin 2A; helix-hinge-hel	81.83

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.91  E-value=3.5e-23  Score=165.65  Aligned_cols=184  Identities=15%  Similarity=0.049  Sum_probs=157.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR  104 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  104 (232)
                      +..++.+....+..+......+......|.+.++.            .+..+.++..+...++..++.++.|+++||+||
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~   91 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG------------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP   91 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST------------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCc
Confidence            34455566666666666666666777788776432            456778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchh
Q 026854          105 KLSMVLMFVLACIFLLPLVF----HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVC  180 (232)
Q Consensus       105 r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  180 (232)
                      |++++++..+.+++.+...+    .++.+.+++.+++.|++.+...+...++++|++|+++|+++.++.+....+|..++
T Consensus        92 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  171 (451)
T 1pw4_A           92 RVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIP  171 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988    88888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHhcccccccC
Q 026854          181 PLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETKG  220 (232)
Q Consensus       181 ~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~  220 (232)
                      |.+++++.+..| |+..+++.+++.++..+..++..||+++
T Consensus       172 ~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          172 PLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            999999889888 9999999888887777666666676543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.90  E-value=2.8e-22  Score=159.87  Aligned_cols=185  Identities=14%  Similarity=0.085  Sum_probs=156.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 026854           25 RKLIRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGR  104 (232)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  104 (232)
                      +++++.++.+....+.............|.+.++.+           .+..+.++..+...++..++.++.|+++||+||
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~   90 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFT-----------LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY   90 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-----------CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence            344556666666777777777778888888887776           899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhH
Q 026854          105 KLSMVLMFVLACIFLLPL---VFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCP  181 (232)
Q Consensus       105 r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~  181 (232)
                      |++++++..+.+++.+..   ...++.+.+.+.+++.|++.+...+...++++|++|+++|+++.++.+....+|..++|
T Consensus        91 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  170 (438)
T 3o7q_A           91 KAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAV  170 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888   66788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-hccc-------------------------hhHHHHHHHHHHHHHHHHHh-cccccccC
Q 026854          182 LVAVGLV-TSCH-------------------------LRLAVILFEVVFVLAIASSL-LFPFETKG  220 (232)
Q Consensus       182 ~i~~~l~-~~~g-------------------------~~~~~~~~~~~~~~~~~~~~-~~~~e~~~  220 (232)
                      .+.+.+. +..+                         |+..+++.++...+..+..+ ...||+++
T Consensus       171 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          171 VFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS  236 (438)
T ss_dssp             HHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred             HHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence            9999998 5544                         77788776666655544433 33465544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.90  E-value=1.3e-22  Score=164.21  Aligned_cols=187  Identities=18%  Similarity=0.164  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHH
Q 026854           33 LLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMF  112 (232)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~  112 (232)
                      ......+......+....|.|.+.+..+           .+..+.........+..+++.++++++.||+|||+.++.+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~  349 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLG-----------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGA  349 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSS-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcC-----------CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccch
Confidence            3333344445556666777777776554           55666677777888999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHH
Q 026854          113 VLACIFLLPLVFH-----QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGL  187 (232)
Q Consensus       113 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  187 (232)
                      ..+.++.+.+...     ++........+....+..+..++.+.+.+|++|++.|+++.|+.+..+++++.+++.+.+.+
T Consensus       350 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l  429 (491)
T 4gc0_A          350 LGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM  429 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877666541     11222222222233334455678899999999999999999999999999999999988876


Q ss_pred             hhc------cchhHHHHHHHHHHHHHHHHHhcccccccCCCchhhHHhh
Q 026854          188 VTS------CHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDAVDAI  230 (232)
Q Consensus       188 ~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  230 (232)
                      .+.      .++...+++++++++++.++.++++||||++++||.++..
T Consensus       430 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f  478 (491)
T 4gc0_A          430 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALW  478 (491)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGT
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHh
Confidence            543      3455678888999999998888999999999999876544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.87  E-value=4.9e-21  Score=155.00  Aligned_cols=182  Identities=12%  Similarity=0.038  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhh-hchHH
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDK-IGRKL  106 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~  106 (232)
                      ++..+......++....++....+.+.+.++..     ..++.+.+..+.++..+...++..++.++.|+++|| +|||+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~   86 (491)
T 4aps_A           12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI-----STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP   86 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            345666667777777888888777777775420     000124889999999999999999999999999999 89999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccch--hhhhhHHHHHhhhhhhchhHHHH
Q 026854          107 SMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSA--RTTGAGVASAVGRVGGMVCPLVA  184 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~i~  184 (232)
                      ++..+..+..++.+...+.++.+.+.+.+++.|++.+...+...++++|++|+++  |+++.++.+...++|..++|.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  166 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888899999999999999999999999999999988  77788888899999999999999


Q ss_pred             HHHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          185 VGLVTSCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       185 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      +.+.+..||+..+++.++..+++.+...+.
T Consensus       167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          167 GAAQEAAGYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998877666665554433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.86  E-value=1.8e-21  Score=152.44  Aligned_cols=178  Identities=13%  Similarity=0.053  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHH
Q 026854           33 LLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMF  112 (232)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~  112 (232)
                      ......+.............|.+.++.+           .+..+.++..+...++..++.++.|+++||+|||+.+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   72 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARDLN-----------VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM   72 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSS-----------STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            3444555666666666777888887766           88899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc
Q 026854          113 VLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH  192 (232)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g  192 (232)
                      .+..++.+.....++.+.+.+.+++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+++.+..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  152 (375)
T 2gfp_A           73 SIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN  152 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence            99999999988889999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccccccCC
Q 026854          193 LRLAVILFEVVFVLAIASSLLFPFETKGR  221 (232)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  221 (232)
                      |+..+.+.++...+..+...+..||++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          153 WRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            99999888888777776566677876543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.83  E-value=1.8e-19  Score=146.97  Aligned_cols=182  Identities=13%  Similarity=0.078  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh-chHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI-GRKLS  107 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~  107 (232)
                      +.++...+..++....++....+.|.+.++..+.    ....+.+..+.++..+...++..++.++.|+++||+ |||++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~   87 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLL----SIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT   87 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS----CCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3444556667777777777777777776432200    000116788889999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHH---HHHhhhhhhchhHHH
Q 026854          108 MVLMFVLACIFLLPLVFHQ-SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGV---ASAVGRVGGMVCPLV  183 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~g~~~~~~i  183 (232)
                      +.++..+..++.+...+.+ +.+.+.+.+++.|++.+...+...++++|.+|+++|+++.+.   .+...++|..++|.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~  167 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS  167 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888887 888888999999999999999999999999999999876666   888889999999999


Q ss_pred             HHHHhhccchhHHHHHHHHHHHHHHHHHhcc
Q 026854          184 AVGLVTSCHLRLAVILFEVVFVLAIASSLLF  214 (232)
Q Consensus       184 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  214 (232)
                      .+++.+..||+..+.+.++..++..+.....
T Consensus       168 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             STHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998899999988887776666555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.82  E-value=2.9e-19  Score=142.88  Aligned_cols=177  Identities=15%  Similarity=0.171  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhh--chHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKI--GRKL  106 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~  106 (232)
                      +.++...+..++.....+....+.|.+.++..          +.+..+.+.......++.+++.++.|++.||+  |||+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  321 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  321 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            45566666677777777888889999987632          38888889999999999999999999999999  9999


Q ss_pred             HHHHHHHHHH-HHHHHHHhh--hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhh-hhchhHH
Q 026854          107 SMVLMFVLAC-IFLLPLVFH--QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRV-GGMVCPL  182 (232)
Q Consensus       107 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~  182 (232)
                      .+..+..+.. ++.+.+...  .+.+...+..++.|++.+...+....+..|.+|++.|+++.|+.+...++ |..++|.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~  401 (451)
T 1pw4_A          322 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  401 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            8888777766 555554443  35666667777788888888888889999999999999999999999999 9999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHhccc
Q 026854          183 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  215 (232)
Q Consensus       183 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  215 (232)
                      +.|++.+..|+...+++.+++.+++.+..+...
T Consensus       402 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          402 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888888888777766665543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.80  E-value=1.1e-18  Score=138.72  Aligned_cols=150  Identities=12%  Similarity=0.060  Sum_probs=119.8

Q ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 026854           74 DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYA  153 (232)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  153 (232)
                      ....+....+..++.+++.++.|+++||+|||+++..+..+.++..+...+.++.+...+..++.+++.+...+..+.+.
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456667777788889999999999999999999888888877766666655665555555566666655666678899


Q ss_pred             ccccccchhhhhhHHH-HHhhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCCc
Q 026854          154 PEIYPTSARTTGAGVA-SAVGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGREL  223 (232)
Q Consensus       154 ~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  223 (232)
                      +|.+|++.|+++.++. +...++|+.++|.+.|++.+..|+...|.+.+++.+++.+..+...||+++.++
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence            9999999999999995 777789999999999999998888888888888888887777777777665543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.78  E-value=8.3e-18  Score=136.00  Aligned_cols=146  Identities=15%  Similarity=0.038  Sum_probs=118.1

Q ss_pred             CchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHH
Q 026854           73 KDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLV------------------FHQSAVVTTVL  134 (232)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~  134 (232)
                      +....++..+...++.++|++++|+++||+|||++++++.++..++.+...                  .+++.+.+++.
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~  132 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY  132 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence            344566778888999999999999999999999999999999999988877                  36788899999


Q ss_pred             HHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhcc--------chhHHHHHHHHHHHH
Q 026854          135 LFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSC--------HLRLAVILFEVVFVL  206 (232)
Q Consensus       135 ~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~--------g~~~~~~~~~~~~~~  206 (232)
                      +++.|++.|+..+....+++|..|++.|++..++.+.....|..+++.+........        +|+..+ .......+
T Consensus       133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  211 (491)
T 4gc0_A          133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMF-ASECIPAL  211 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHH-HTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHh-hhhhhhhh
Confidence            999999999999999999999999999999999999999899888888877665432        233333 33333344


Q ss_pred             HHHHHhccccccc
Q 026854          207 AIASSLLFPFETK  219 (232)
Q Consensus       207 ~~~~~~~~~~e~~  219 (232)
                      ..+...++.||++
T Consensus       212 ~~~~~~~~~peSp  224 (491)
T 4gc0_A          212 LFLMLLYTVPESP  224 (491)
T ss_dssp             HHHHHGGGSCCCH
T ss_pred             hhhhhhhcCCCCh
Confidence            4444556668874

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.77  E-value=1.6e-17  Score=132.43  Aligned_cols=177  Identities=10%  Similarity=-0.033  Sum_probs=136.5

Q ss_pred             chhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHH
Q 026854           18 SFFTLFSRKLIRTTVLLWVLFFANAFSYYGAVLLTSKL-SSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSA   96 (232)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   96 (232)
                      ++++++++   +.++...+..++.....+....+.|.+ .++..          +.+..+.+.......++.+++.++.|
T Consensus       250 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g  316 (438)
T 3o7q_A          250 SLSRLARI---RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIP----------GMTAGFAANYLTGTMVCFFIGRFTGT  316 (438)
T ss_dssp             HHHHHTTC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST----------TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC----------CcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            34445543   334445555555666667777888888 75542          37888899999999999999999999


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhh
Q 026854           97 IIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVG  176 (232)
Q Consensus        97 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  176 (232)
                      +++||+|||+.+..+..+..++.+...+.++.+... ..++.+++.+...+..+++..|.+|++ |+++.++.. ...+|
T Consensus       317 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g  393 (438)
T 3o7q_A          317 WLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG  393 (438)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence            999999999999999988888887777766654433 346777888888899999999999977 888888877 67799


Q ss_pred             hchhHHHHHHHhhccc-hhHHHHHHHHHHHHHHHH
Q 026854          177 GMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIAS  210 (232)
Q Consensus       177 ~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~  210 (232)
                      +.++|.+.|++.+..| ++..+.+.+++.++..+.
T Consensus       394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            9999999999999988 777777665554444443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.63  E-value=5e-16  Score=125.59  Aligned_cols=173  Identities=8%  Similarity=-0.093  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH-----HHHH
Q 026854           39 FANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMV-----LMFV  113 (232)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~  113 (232)
                      +.....+.....+.|.+.++..          +.+..+.+.......++.+++.++.+++.||+|||+...     .+..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          293 VLFWAIEEQGSVVLATFAAERV----------DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             HHHHHHHGGGGTHHHHHHHHSC----------CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHh----------ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence            3333344444445555554322          133344566667778888889999999999999886544     5666


Q ss_pred             HHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHH
Q 026854          114 LACIFLLPLVFHQ---------SAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVA  184 (232)
Q Consensus       114 ~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~  184 (232)
                      +..++...+....         +.+...+..++.+++.+...+..+.+..|.+|++.|+++.|+.+...++|..++|.+.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~  442 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV  442 (491)
T ss_dssp             HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666555544422         5556667777888888888889999999999999999999999999999999999999


Q ss_pred             HHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCC
Q 026854          185 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRE  222 (232)
Q Consensus       185 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  222 (232)
                      +++.+. +....+...+++.++..+..++..++.+++.
T Consensus       443 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (491)
T 4aps_A          443 TLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM  479 (491)
T ss_dssp             GGGGGS-STTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred             HHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887765 5666777777777777777776666665543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.54  E-value=1.1e-15  Score=121.41  Aligned_cols=177  Identities=11%  Similarity=0.005  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH
Q 026854           31 TVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVL  110 (232)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  110 (232)
                      ++......+.....+.....+.|.+.++..          +.+..+.++..+...++..++++++|+++||+|||+++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~   78 (417)
T 2cfq_A            9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDIN----------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTHHHHHHTTT----------CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            333444444444444555567787775432          3888899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH---HhhhhHH-HHHHHHHHHHHHHhhhhhhhhhcccccccc--chhhhhhHHHHHhhhhhhchhHHHH
Q 026854          111 MFVLACIFLLPL---VFHQSAV-VTTVLLFGVRMCATGTITVATIYAPEIYPT--SARTTGAGVASAVGRVGGMVCPLVA  184 (232)
Q Consensus       111 ~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~~~~i~  184 (232)
                      +..+..+.....   .+.+... .......+.+...+...+.......+..++  +.|+.+.+..+..+.+|..++|.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~  158 (417)
T 2cfq_A           79 IITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIV  158 (417)
T ss_dssp             HHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence            877665422111   1111110 011122222222222222222233333332  3456677777778889999999999


Q ss_pred             HHHhhccchhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          185 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       185 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      +++.+. +|+..+++.++..++..+..++..||+
T Consensus       159 ~~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~  191 (417)
T 2cfq_A          159 GIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDA  191 (417)
T ss_dssp             HHHHHH-CSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred             HHHHHh-chhHHHHHHHHHHHHHHHHHHHcCccc
Confidence            998874 777777765555444433333343444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.47  E-value=2.3e-14  Score=112.00  Aligned_cols=158  Identities=11%  Similarity=-0.016  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      |.++...+..+......+....+.|.+.++..          +.+..+.+.......++.+++.++.+++.||+||+.  
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--  266 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL----------GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--  266 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH----------HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            44455555556666666677777777765421          367778888888899999999999999999998832  


Q ss_pred             HHHHHH-HHHHHH--HHHh--hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHH
Q 026854          109 VLMFVL-ACIFLL--PLVF--HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLV  183 (232)
Q Consensus       109 ~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  183 (232)
                      ..+... ...+..  ....  .++.+...+..++.+++.+...+....+..|..| ++|+++.|+.+...++|..++|.+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~  345 (375)
T 2gfp_A          267 WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL  345 (375)
T ss_dssp             HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence            222222 222111  1111  2355556667778888888888999999999998 899999999999999999999999


Q ss_pred             HHHHhhccchhHHHHH
Q 026854          184 AVGLVTSCHLRLAVIL  199 (232)
Q Consensus       184 ~~~l~~~~g~~~~~~~  199 (232)
                      .+.+.+..++...+.+
T Consensus       346 ~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          346 SAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             CTHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcccHHHHH
Confidence            9999877665544443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.28  E-value=1.7e-12  Score=105.70  Aligned_cols=148  Identities=9%  Similarity=0.024  Sum_probs=90.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHH----hhhch----HHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHH
Q 026854           78 YVDVFITSFAELPGLILSAIIV----DKIGR----KLSMVLMFVLACIFLLPLVFH---------QSAVVTTVLLFGVRM  140 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~g~l~----dr~gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~  140 (232)
                      +.......++.+++.++.+++.    ||.|+    ++.+.++..+.+++.+.+...         .+.+...+..++.++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            3333333344444444444432    44433    245666777766666655542         245566667788888


Q ss_pred             HHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHHHHHHhhccc--h---------hHHHHHHHHHHHHHHH
Q 026854          141 CATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLVAVGLVTSCH--L---------RLAVILFEVVFVLAIA  209 (232)
Q Consensus       141 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~g--~---------~~~~~~~~~~~~~~~~  209 (232)
                      +.+...+..+.+..|..|++.|++++|+.+...++|+.++|.+.+.+.+..+  |         ...+++.+++.+++.+
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI  497 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999999999998877421  1         2226666777777776


Q ss_pred             HHhcccccccCCCchh
Q 026854          210 SSLLFPFETKGRELKD  225 (232)
Q Consensus       210 ~~~~~~~e~~~~~~~~  225 (232)
                      ..+++.+++++++.++
T Consensus       498 ~~~~~~~~~~~~~~~~  513 (524)
T 2xut_A          498 VFALYARSYQMQDHYR  513 (524)
T ss_dssp             HHC-------------
T ss_pred             HHHHHHHHhccchhhh
Confidence            6666666665544433

>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}

Probab=81.83  E-value=1  Score=18.89  Aligned_cols=14  Identities=36%  Similarity=0.517  Sum_probs=11.5

Q ss_pred             HHHHHHhhhchHHH
Q 026854           94 LSAIIVDKIGRKLS  107 (232)
Q Consensus        94 ~~g~l~dr~grr~~  107 (232)
                      +.|.+..|+|||.+
T Consensus         2 lfgklikkfgrkai   15 (26)
T 2g9p_A            2 LFGKLIKKFGRKAI   15 (26)
T ss_dssp             HHHHHHHHHTSHHH
T ss_pred             cHHHHHHHHhHHHH
Confidence            46889999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 1/125 (0%)

Query: 101 KIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTS 160
             G      +  V     +  +    +  V  + +  +     G + +  ++A E+ P  
Sbjct: 316 NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 375

Query: 161 ARTTGAGVASAVGRVGGMVC-PLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETK 219
           A  T AG     G +GG V    +    V         ++     +LA+   ++     K
Sbjct: 376 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435

Query: 220 GRELK 224
            R  +
Sbjct: 436 RRHEQ 440

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.88
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.81
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.79
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.65

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.1e-22  Score=156.49  Aligned_cols=179  Identities=15%  Similarity=0.050  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 026854           28 IRTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLS  107 (232)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  107 (232)
                      |+.+..+++.++........+....|.. ++.+           .+.++.++..+...++..++.+++|+++||+|||++
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g-----------~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~   91 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-----------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF   91 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-----------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhC-----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            3334434444444444444555666744 4454           899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhhhhchhHHH
Q 026854          108 MVLMFVLACIFLLPLVFH----QSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRVGGMVCPLV  183 (232)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  183 (232)
                      +.++.++..++.+.....    ++.+.+.+.+++.|++.+...+....+++|++|+++|++++++.+....+|..++|.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~  171 (447)
T d1pw4a_          92 LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL  171 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhh
Confidence            999999998888877663    3566788889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcc-chhHHHHHHHHHHHHHHHHHhcccccc
Q 026854          184 AVGLVTSC-HLRLAVILFEVVFVLAIASSLLFPFET  218 (232)
Q Consensus       184 ~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~e~  218 (232)
                      .+.+.+.. +|+..+++.+.+..+..++.+...+|+
T Consensus       172 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         172 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             hhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            88877654 678778887777777766666665554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=4.8e-19  Score=137.19  Aligned_cols=155  Identities=12%  Similarity=0.049  Sum_probs=133.8

Q ss_pred             CCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 026854           72 SKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATI  151 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (232)
                      .+............++..++..+.+++.||+|||+.+.++..+..+..+...+.++.+...+..++.+++.+...+...+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  335 (417)
T d1pv7a_         256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            44555667777788889999999999999999999999999999999998888888888888888999999899999999


Q ss_pred             ccccccccchhhhhhHHHHH-hhhhhhchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCCCchhh
Q 026854          152 YAPEIYPTSARTTGAGVASA-VGRVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGRELKDA  226 (232)
Q Consensus       152 ~~~e~~p~~~r~~~~~~~~~-~~~~g~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  226 (232)
                      +++|.+|++.|+++.++... ...+|..++|.+.|++.|..|++..+++.+++.++..++..+.++++++.+.+++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~  411 (417)
T d1pv7a_         336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRR  411 (417)
T ss_dssp             HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHHH
T ss_pred             HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhHh
Confidence            99999999999999998765 4568999999999999999999999999888888888777777766665555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.4e-18  Score=135.28  Aligned_cols=179  Identities=13%  Similarity=0.125  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      +.++......++.....+....+.|.+..+..          +.+..+.+.......++.+++.++.|++.||++||+..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  318 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  318 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhccccc----------ccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc
Confidence            45555666666777777888888998886654          47888889999999999999999999999999976543


Q ss_pred             HHHHHHHHHHHHHH---Hh--hhhHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhhhhHHHHHhhhh-hhchhHH
Q 026854          109 VLMFVLACIFLLPL---VF--HQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGRV-GGMVCPL  182 (232)
Q Consensus       109 ~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~  182 (232)
                      ........+.....   ..  ..+.+...+..++.+++.+...+....+..|.+|++.|+++.|+.+..+++ |..++|.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~  398 (447)
T d1pw4a_         319 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  398 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333222222221   11  345566666677778887788888899999999999999999999998887 5567899


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHhccccc
Q 026854          183 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  217 (232)
Q Consensus       183 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e  217 (232)
                      +.|++.+..|+...+.+..++.+++.++...+.++
T Consensus       399 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         399 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988888887777776665555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.2e-15  Score=116.25  Aligned_cols=182  Identities=9%  Similarity=0.002  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 026854           29 RTTVLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSM  108 (232)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  108 (232)
                      |.++...+.++...+.......+.|.+.++..          |.+..+.++..+...++..+++++.|+++||+|||+.+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~----------g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l   76 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN----------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL   76 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence            44455555555555555555666777664421          38999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHhhhhhhhhhcccccccc--chhhhhhHHHHHhhhhhhchhHH
Q 026854          109 VLMFVLACIFLLPLVFHQSAVVTTVLLFGV----RMCATGTITVATIYAPEIYPT--SARTTGAGVASAVGRVGGMVCPL  182 (232)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~~~~  182 (232)
                      +++..+..++........+........++.    +...+...........+..++  +.+....+........+..++|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccc
Confidence            999888888777776644433332222222    222222222222222222222  34455666777777888899999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHhcccccccCC
Q 026854          183 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETKGR  221 (232)
Q Consensus       183 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  221 (232)
                      +.+.+.+. +++..+........+..+...+..+|++..
T Consensus       157 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (417)
T d1pv7a_         157 IVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSS  194 (417)
T ss_dssp             HHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred             cccccccc-cccccccchhhHHHHHHHHHHHHhcccccc
Confidence            99988876 445555555555555555556665665443