Citrus Sinensis ID: 026855

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MIHNKIDYSYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQSYDPSWVGPLTDQLETHRLGSPSDFNDQGRSIGGYHSFRFPM
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHcccccccccHccEEcccHHHHHHHHHHHHHHHcccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mihnkidysysastssswtrEEDKLFERALvtfpeetpgrweriarqvpgkssvdvQRRYDDLVLDLRKIEAGlvelpgyedemdspgrvaesgaslgnnsnrsrdreterrkgvpwtaEEHRLFLIGLekygkgdwrsisrnavvsrtptqVASHAQKYFLRMNSvrkdkkrssihdittvdaagsssqsydpswvgpltdqlethrlgspsdfndqgrsiggyhsfrfpm
Flexible Loop (DISEMBL)
mihnkidysysastssswtreEDKLFERALvtfpeetpgrweriarqvpgkssvdvqrRYDDLVLDLRKIEAGlvelpgyedemdspgrvaesgaslgnnsnrsrdreterrkgvpwtaeeHRLFLIGlekygkgdwRSISRnavvsrtptqvashaqkyflrmnsvrkdkkrssihdittvdaagsssqsydpsWVGPLTDQLETHRlgspsdfndqgrsiggyhsfrfpm
Low Complexity Region (SEG)
MIHNKIDysysastsssWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQSYDPSWVGPLTDQLETHRLGSPSDFNDQGRSIGGYHSFRFPM
Disordered region (IsUnstruct)
************************LFERALVTFP****GRWERIARQ******VDVQRRYDDLVLDLRKIEAGLVELP*************************************PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLR*********************************************************************
Disordered Region (DISOPRED)
*********************EDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESGASLGNNSNRSRDR********PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQK***********************************************************************P*
Disordered Region (DISEMBL)
*********************EDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVA***********************VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSV********IHDITTVD***********SWVGPLTDQLETHRLGSPSDFNDQGRSIGGYHSFRFPM
Disordered Region (DISPRO)
*******Y**SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYE******************************RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS******************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIHNKIDYSYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQSYDPSWVGPLTDQLETHRLGSPSDFNDQGRSIGGYHSFRFPM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q8S9H7	307	Transcription factor DIVA	N/A	no	0.767	0.579	0.528	1e-49
Q2V9B0	297	Transcription factor MYB1	N/A	no	0.310	0.242	0.694	3e-20
Q1A173	97	Protein RADIALIS-like 6 O	no	no	0.314	0.752	0.479	3e-12
Q6NNN0	81	Protein RADIALIS-like 3 O	no	no	0.271	0.777	0.507	4e-12
Q9SIJ5	101	Protein RADIALIS-like 2 O	no	no	0.349	0.801	0.389	5e-11
Q54Z40	1217	Myb-like protein H OS=Dic	yes	no	0.646	0.123	0.286	7e-11
F4JVB8	100	Protein RADIALIS-like 1 O	no	no	0.271	0.63	0.444	9e-11
Q869R9	734	Myb-like protein J OS=Dic	no	no	0.310	0.098	0.467	2e-10
Q6P2Y3	620	DnaJ homolog subfamily C	yes	no	0.228	0.085	0.547	7e-10
P54103	621	DnaJ homolog subfamily C	yes	no	0.159	0.059	0.56	8e-10

>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1

 Score =  196 bits (498), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 130/191 (68%), Gaps = 13/191 (6%)

Query: 14  TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAG 73
           +++ WT  E+K FE AL  F E TP RWER+A +VPGK+  DV R+Y +L  D+  IEAG
Sbjct: 22  STTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKTVGDVMRQYKELEDDVSSIEAG 81

Query: 74  LVELPGYEDEMDSPGRV-----------AESGASLGNNSNRSRDRETERRKGVPWTAEEH 122
            V +PGY     SP  +            +S  + G  S+  R  E ER+KGVPWT EEH
Sbjct: 82  FVPVPGYS--TSSPFTLEWGSGHGFDGFKQSYGTGGRKSSSGRPSEQERKKGVPWTEEEH 139

Query: 123 RLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTV 182
           +LFL+GL+KYGKGDWR+ISRN V++RTPTQVASHAQKYF+R  S  KDK+R+SIHDITTV
Sbjct: 140 KLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTV 199

Query: 183 DAAGSSSQSYD 193
           + + + + S D
Sbjct: 200 NLSDNQTPSPD 210

Involved in the dorsovental asymmetry of flowers. Promotes ventral identity.
Antirrhinum majus (taxid: 4151)

>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 63/72 (87%)

Query: 110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRK 169
           ER++GVPWT EEH+LFL+GL+K GKGDWR ISRN V +RTPTQVASHAQKYFLR +++ +
Sbjct: 90  ERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNR 149

Query: 170 DKKRSSIHDITT 181
            ++RSS+ DITT
Sbjct: 150 RRRRSSLFDITT 161

Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance.

Solanum tuberosum (taxid: 4113)

>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%)

Query: 9  SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLR 68
          S S S+ S WT  ++K+FERAL  + ++TP RW  +A+ V GK+  +V+R YD LV DL 
Sbjct: 3  SNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLI 62

Query: 69 KIEAGLVELPGYE 81
           IE G V LP Y+
Sbjct: 63 NIETGRVPLPNYK 75

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 45/63 (71%)

Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
          WTR+E+KLFERAL T+ ++TP RW  +AR V GKS+ +V+R Y+ L+ D+  IE+G    
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRYPH 71

Query: 78 PGY 80
          P Y
Sbjct: 72 PNY 74

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 14/95 (14%)

Query: 18  WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
           WT +++K FERAL  + ++TP RW  +AR V GK+  + +R+YD LV D+  IE G V  
Sbjct: 14  WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73

Query: 78  PGYEDEMDSPGRVAESGASLGNNSNRSRDRETERR 112
           P Y+              +   NSNR R R+ E+R
Sbjct: 74  PDYK--------------TTTGNSNRGRLRDEEKR 94

Probable transcription factor. Required for female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 21/171 (12%)

Query: 9   SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLR 68
           + S +T SSWT+EE++LF  A   + ++     ++I   V  K+ + V+       L L 
Sbjct: 144 TISGATRSSWTKEEERLFVEAYKLYDKDN----KKIQEHVKTKTILQVRSHAQKFALKLE 199

Query: 69  KIEAGLVELPGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIG 128
           K   G+  L    D +D           L N S+ +           PW+ EEH LFL  
Sbjct: 200 K--NGIKSL----DNIDQ----------LFNQSHAASSSHNLPSHNTPWSNEEHELFLKA 243

Query: 129 LEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDI 179
           +EKYG+G+W+ IS   + SR   Q+ +HA+ YF +++       + +I ++
Sbjct: 244 IEKYGRGNWKLIS-TLIKSRNTLQIKNHARIYFDKISQQNGPPSKKTIIEV 293

Dictyostelium discoideum (taxid: 44689)

>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 44/63 (69%)

Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
          WT +++K FE+AL T+ ++TP RW+ +A+ V GK++ +V+R Y+ LV D+  IE G V  
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPF 73

Query: 78 PGY 80
          P Y
Sbjct: 74 PNY 76

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 5/77 (6%)

Query: 107 RETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166
           ++T  ++G  WT EEH  FL G++ +GKG W+ I++  V +RTPTQ+ SHAQKY+LR   
Sbjct: 371 KKTSLKQG--WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLRQKQ 427

Query: 167 VRKDKKRSSIHDITTVD 183
             K+K+  SIHD++  D
Sbjct: 428 ETKNKR--SIHDLSLQD 442

Dictyostelium discoideum (taxid: 44689)

>sp|Q6P2Y3|DNJC2_XENTR DnaJ homolog subfamily C member 2 OS=Xenopus tropicalis GN=dnajc2 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 36/53 (67%)

Query: 12  ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLV 64
           A+  S WT EE KL E+AL T+P  TP RWE+IA  VPG+S  D  +RY +LV
Sbjct: 547 AADMSPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRSKKDCMKRYKELV 599

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation.

Xenopus tropicalis (taxid: 8364)

>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 35/50 (70%)

Query: 15  SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLV 64
           S+ WT EE KL E+AL T+P  TP RWE+IA  VPG++  D  RRY +LV
Sbjct: 551 STPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMRRYKELV 600

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation (By similarity). Specifically binds DNA sequence 5'-GTCAAGC-3'.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
255565691	214	DNA binding protein, putative [Ricinus c	0.905	0.981	0.599	6e-64
224054478	223	predicted protein [Populus trichocarpa]	0.943	0.982	0.593	2e-63
296084883	225	unnamed protein product [Vitis vinifera]	0.836	0.862	0.635	3e-61
225464896	224	PREDICTED: myb-like protein H [Vitis vin	0.836	0.866	0.635	3e-61
351725775	233	syringolide-induced protein 1-3-1A [Glyc	0.926	0.922	0.531	9e-57
449446301	233	PREDICTED: transcription factor DIVARICA	0.956	0.952	0.510	2e-56
110931666	233	MYB transcription factor MYB69 [Glycine	0.926	0.922	0.517	4e-55
351725743	236	syringolide-induced protein 1-3-1B [Glyc	0.918	0.902	0.526	7e-54
358346346	244	DnaJ homolog subfamily C member [Medicag	0.922	0.877	0.530	1e-53
255544127	295	DNA binding protein, putative [Ricinus c	0.801	0.630	0.532	3e-51

>gi|255565691|ref|XP_002523835.1| DNA binding protein, putative [Ricinus communis] gi|223536923|gb|EEF38561.1| DNA binding protein, putative [Ricinus communis]

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 133/222 (59%), Positives = 159/222 (71%), Gaps = 12/222 (5%)

Query: 12  ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIE 71
           AS SSSW+R EDKLFERALV FPEETP RWE+IA  VPGKS  DV+  Y+DLV D+++I+
Sbjct: 4   ASPSSSWSRLEDKLFERALVVFPEETPDRWEKIASHVPGKSRFDVKEHYEDLVYDVKEID 63

Query: 72  AGLVELPGYEDEMDSPGRVAESGASLGNNSNRSRDRET-ERRKGVPWTAEEHRLFLIGLE 130
           +G VELP Y D+       AESG S     ++ +++ET ERRKGVPWT EEHRLFLIGL+
Sbjct: 64  SGRVELPSYGDQFGLGWGAAESGTSQVWFGSKGKEKETSERRKGVPWTEEEHRLFLIGLQ 123

Query: 131 KYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQ 190
           +YGKGDWRSISRNAVVSRTPTQVASHAQKYFLR+NSV+K+KKR SIHDITT  A     Q
Sbjct: 124 RYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRLNSVKKEKKRPSIHDITT-SANSVPPQ 182

Query: 191 SYDPSWVGPLTDQLETHRLGSPSDFNDQGRSIGGYHSFRFPM 232
           S D +W     D ++      P  + D G     +H F FP+
Sbjct: 183 SNDHNWA----DYMD------PKPYPDHGSPSSAFHGFGFPV 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054478|ref|XP_002298280.1| predicted protein [Populus trichocarpa] gi|222845538|gb|EEE83085.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/224 (59%), Positives = 166/224 (74%), Gaps = 5/224 (2%)

Query: 12  ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIE 71
           +S  SSW+R EDK FE+ALV FPEETP RWE+I+  VPGKS  +V++ Y+DLV D+ +I+
Sbjct: 2   SSHLSSWSRLEDKQFEQALVLFPEETPRRWEKISSYVPGKSWREVRKHYEDLVHDVLEID 61

Query: 72  AGLVELPGY-EDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLE 130
           +G VE+P Y +DE+      +  GA+  + S + R+  TERRKG PWT EEHRLFLIGL+
Sbjct: 62  SGRVEVPVYDQDELWGDSTTSLGGAAAESRSGKEREH-TERRKGTPWTEEEHRLFLIGLQ 120

Query: 131 KYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQ 190
           KYGKGDWRSISRNAVVSRTPTQVASHAQKYFLR+NSV+K+KKRSSIHDIT  +A  S +Q
Sbjct: 121 KYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRLNSVKKEKKRSSIHDITATNATHSMAQ 180

Query: 191 -SYDPSWVGPLTDQLETHRLGSPSD-FNDQGRSIGGYHSFRFPM 232
            S+DP+W   L DQ     L  P++ F+DQG  +  Y  F FPM
Sbjct: 181 TSHDPNWNFELMDQSVDEPLSRPANFFHDQGNPL-AYQGFGFPM 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084883|emb|CBI28292.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 148/195 (75%), Gaps = 1/195 (0%)

Query: 20  REEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPG 79
           R +DKLFERALV  PEETP RW++IA QVPGKSS +V+R Y+DLV D+ +I++G VELP 
Sbjct: 18  RHQDKLFERALVVIPEETPDRWDKIAAQVPGKSSSEVRRHYEDLVHDVAEIDSGRVELPL 77

Query: 80  YEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRS 139
           YEDE       ++S A   + S R R  E+ER+KGVPWT EEHRLFLIGL++YGKGDWRS
Sbjct: 78  YEDESCGSPWASDSRAGQVSFSPRPRQSESERKKGVPWTEEEHRLFLIGLQRYGKGDWRS 137

Query: 140 ISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQSYDPSWVG- 198
           ISRNAVVSRTPTQVASHAQKYF+R+ S +KDKKRSSIHDITTVD + S   S   +WVG 
Sbjct: 138 ISRNAVVSRTPTQVASHAQKYFMRLTSGKKDKKRSSIHDITTVDTSNSLPHSNTQTWVGE 197

Query: 199 PLTDQLETHRLGSPS 213
            L  Q+  +  G PS
Sbjct: 198 SLASQIPYYEEGPPS 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464896|ref|XP_002273261.1| PREDICTED: myb-like protein H [Vitis vinifera]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 148/195 (75%), Gaps = 1/195 (0%)

Query: 20  REEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPG 79
           R +DKLFERALV  PEETP RW++IA QVPGKSS +V+R Y+DLV D+ +I++G VELP 
Sbjct: 25  RHQDKLFERALVVIPEETPDRWDKIAAQVPGKSSSEVRRHYEDLVHDVAEIDSGRVELPL 84

Query: 80  YEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRS 139
           YEDE       ++S A   + S R R  E+ER+KGVPWT EEHRLFLIGL++YGKGDWRS
Sbjct: 85  YEDESCGSPWASDSRAGQVSFSPRPRQSESERKKGVPWTEEEHRLFLIGLQRYGKGDWRS 144

Query: 140 ISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQSYDPSWVG- 198
           ISRNAVVSRTPTQVASHAQKYF+R+ S +KDKKRSSIHDITTVD + S   S   +WVG 
Sbjct: 145 ISRNAVVSRTPTQVASHAQKYFMRLTSGKKDKKRSSIHDITTVDTSNSLPHSNTQTWVGE 204

Query: 199 PLTDQLETHRLGSPS 213
            L  Q+  +  G PS
Sbjct: 205 SLASQIPYYEEGPPS 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725775|ref|NP_001237360.1| syringolide-induced protein 1-3-1A [Glycine max] gi|19911577|dbj|BAB86892.1| syringolide-induced protein 1-3-1A [Glycine max]

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 155/224 (69%), Gaps = 9/224 (4%)

Query: 16  SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLV 75
           + WTR  DKLFERAL+  PE+ P RWE+IA QVPGKS+V+V+  Y+ LV D+ +I++G V
Sbjct: 12  TQWTRYHDKLFERALLVVPEDLPDRWEKIADQVPGKSAVEVREHYEALVHDVFEIDSGRV 71

Query: 76  ELPGYEDEMDSPGRVAESGASLGNNSNR-------SRDRETERRKGVPWTAEEHRLFLIG 128
           E+P Y D+  +      +G S  +N+N+        +  E ER+KG PWT EEHRLFLIG
Sbjct: 72  EVPSYVDDSVAMPPSGGAGISTWDNANQISFGSKLKQQGENERKKGTPWTEEEHRLFLIG 131

Query: 129 LEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSS 188
           L K+GKGDWRSISRN VV+RTPTQVASHAQKYFLR NSV+K++KRSSIHDITTVD + S+
Sbjct: 132 LSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVD-SNSA 190

Query: 189 SQSYDPSWVGPLTDQLETHRLGSPSDFNDQGRSIGGYHSFRFPM 232
               D +WV P    L+  +    S+ +DQ  +  GY ++ F M
Sbjct: 191 PMPIDQTWVPPPGGSLQQSQQYPSSNMHDQMGTF-GYSNYGFDM 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446301|ref|XP_004140910.1| PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] gi|449524322|ref|XP_004169172.1| PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/243 (51%), Positives = 157/243 (64%), Gaps = 21/243 (8%)

Query: 1   MIHNKIDYSYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
           M H+   ++    +S+ WTR EDKLFE ALV  P   P RW+R+A  VPGKS  +V+  Y
Sbjct: 1   MFHH-TRWTTMTQSSTHWTRSEDKLFEEALVVVPANLPDRWQRVADHVPGKSPREVKDHY 59

Query: 61  DDLVLDLRKIEAGLVELPGYEDE-------MDSPGRVAESGASLGNNSNRSRDRETERRK 113
           D LV D+ +I++G VELP Y DE        DS G++     S G+ +    D   ER+K
Sbjct: 60  DALVHDVLEIDSGRVELPSYADESAVGLPEWDSSGQI-----SFGSKAKHGGD--NERKK 112

Query: 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKR 173
           G PWT EEHRLFL+GL+K+GKGDWRSISRN V++RTPTQVASHAQKYFLR  S +K++KR
Sbjct: 113 GTPWTEEEHRLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKYFLRQTSGKKERKR 172

Query: 174 SSIHDITTVDAAGSSSQSYDPSWVGPL----TDQLETHRLGSPSDFNDQGRSIGGYHSFR 229
           SSIHDITTVD   S     DP+W+ P     T Q    +L   S   DQG S+ G+ ++R
Sbjct: 173 SSIHDITTVD-NNSIPMPIDPNWISPAPNNPTIQSTMQQLSPTSHGQDQGASL-GFQNYR 230

Query: 230 FPM 232
           FPM
Sbjct: 231 FPM 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110931666|gb|ABH02832.1| MYB transcription factor MYB69 [Glycine max]

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 153/224 (68%), Gaps = 9/224 (4%)

Query: 16  SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLV 75
           + WTR  DKLFERAL+  PE+ P RWE+IA QVPGKS+V+V+  Y+ LV D+ +I++G V
Sbjct: 12  TQWTRYHDKLFERALLVVPEDLPDRWEKIADQVPGKSAVEVREHYEALVHDVFEIDSGRV 71

Query: 76  ELPGYEDEMDSPGRVAESGASLGNNSNR-------SRDRETERRKGVPWTAEEHRLFLIG 128
           E+P Y D+  +      +G S  +N+N+        +  E ER+KG PWT EEHRLFLIG
Sbjct: 72  EVPSYVDDSVAMPPSGGAGISTWDNANQISFGSKLKQQGENERKKGTPWTEEEHRLFLIG 131

Query: 129 LEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSS 188
           L KYGKGDWRSISRN VV+RTPTQVASHAQ+YFLR NSV+++ KRS IHDITTVD + S+
Sbjct: 132 LSKYGKGDWRSISRNVVVTRTPTQVASHAQRYFLRQNSVKREMKRSCIHDITTVD-SNSA 190

Query: 189 SQSYDPSWVGPLTDQLETHRLGSPSDFNDQGRSIGGYHSFRFPM 232
               D +WV P     +  +    S+ +DQ  ++ GY ++ F M
Sbjct: 191 PMPIDQTWVPPPGGSPQQSQQYPSSNMHDQMGTL-GYSNYGFDM 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725743|ref|NP_001237103.1| syringolide-induced protein 1-3-1B [Glycine max] gi|19911579|dbj|BAB86893.1| syringolide-induced protein 1-3-1B [Glycine max]

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 152/226 (67%), Gaps = 13/226 (5%)

Query: 16  SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLV 75
           + WTR  DKLFERAL+  PE+ P RWE+IA QVPGKS+V+V+  Y+ LV D+ +I++G V
Sbjct: 15  TQWTRYHDKLFERALLVVPEDLPDRWEKIADQVPGKSAVEVREHYEALVHDVFEIDSGRV 74

Query: 76  ELPGYEDEMDSPGRVAESGASLG--NNSNR-------SRDRETERRKGVPWTAEEHRLFL 126
           E+P Y D  DS       GA +   +N+N+        +  + ER+KG PWT EEHRLFL
Sbjct: 75  EVPSYVD--DSVATPPSGGAEISTWDNANQISFGSKPKQQGDNERKKGTPWTEEEHRLFL 132

Query: 127 IGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAG 186
           IGL K+GKGDWRSISRN VV+RTPTQVASHAQKYFLR NSV+K++KRSSIHDITTVD + 
Sbjct: 133 IGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVD-SN 191

Query: 187 SSSQSYDPSWVGPLTDQLETHRLGSPSDFNDQGRSIGGYHSFRFPM 232
           S     D +WV P    ++       S+  DQ  +  GY ++ F M
Sbjct: 192 SVPVPIDQNWVPPPGGSVQQSLQYPSSNMLDQMGTF-GYSNYGFGM 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346346|ref|XP_003637230.1| DnaJ homolog subfamily C member [Medicago truncatula] gi|355503165|gb|AES84368.1| DnaJ homolog subfamily C member [Medicago truncatula]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 152/226 (67%), Gaps = 12/226 (5%)

Query: 16  SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLV 75
           + WTR+ DKLFERAL+  PE+ P RWE+IA QVPGKS+ +++  Y+ LV D+ +I++G V
Sbjct: 22  TQWTRDHDKLFERALLMVPEDLPDRWEKIAEQVPGKSAAEIRDHYEALVHDILEIDSGRV 81

Query: 76  ELPGYEDEMD-SPGRVAE--SGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKY 132
           E+P Y DE   S G +AE  S   +   S      + ER+KG PWT EEHRLFLIGL K+
Sbjct: 82  EVPSYSDESAVSGGGLAEWDSSNQISFGSKPRHGGDNERKKGTPWTEEEHRLFLIGLTKF 141

Query: 133 GKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQSY 192
           GKGDWRSISRN VV+RTPTQVASHAQKYFLR NSV+K++KRSSIHDIT+VD + S+    
Sbjct: 142 GKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITSVD-SNSAPVPI 200

Query: 193 DPSWVGP------LTDQLETHRLGSPSDFNDQGRSIGGYHSFRFPM 232
           D +WV P           E H   S ++  DQ  S  GY ++ F M
Sbjct: 201 DQNWVPPPGGGSMQQQSPEMHHYPS-NNLQDQ-MSAYGYSNYGFQM 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544127|ref|XP_002513126.1| DNA binding protein, putative [Ricinus communis] gi|223548137|gb|EEF49629.1| DNA binding protein, putative [Ricinus communis]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/203 (53%), Positives = 139/203 (68%), Gaps = 17/203 (8%)

Query: 12  ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIE 71
           A  SS WTRE+DK FE AL T+PE+   RWE+IA  VPGK+S +++  Y+ LV D+ +IE
Sbjct: 6   ADCSSVWTREQDKAFEDALATYPEDDLDRWEKIAADVPGKTSEEIKFHYELLVEDVNQIE 65

Query: 72  AGLVELPGYEDEMDSPGRVAESGAS-----LGNNSN------RSRDRETERRKGVPWTAE 120
           AG V LP Y     S G   + G S     LG+++N      ++   + ERRKG+ WT +
Sbjct: 66  AGCVPLPNYSSSEGSTGHAGDEGTSKKGSHLGHHNNEPAHGNKASRSDQERRKGIAWTED 125

Query: 121 EHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDIT 180
           EHRLFL+GL+KYGKGDWRSISRN VV+RTPTQVASHAQKYF+R+NS+ KD++RSSIHDIT
Sbjct: 126 EHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT 185

Query: 181 TVDAAGSSSQSYDPSWVGPLTDQ 203
           +V     S+        GP+T Q
Sbjct: 186 SVGNGDISAPQ------GPITGQ 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2175478	215	AT5G04760 [Arabidopsis thalian	0.900	0.972	0.523	6.5e-51
TAIR|locus:2159607	298	AT5G08520 [Arabidopsis thalian	0.866	0.674	0.495	3.7e-48
UNIPROTKB|Q8S9H7	307	DIVARICATA "Transcription fact	0.758	0.573	0.540	3.3e-47
TAIR|locus:2154508	288	AT5G58900 [Arabidopsis thalian	0.909	0.732	0.476	1.4e-46
TAIR|locus:2166459	277	AT5G05790 [Arabidopsis thalian	0.849	0.711	0.5	2.4e-44
TAIR|locus:2042872	298	AT2G38090 [Arabidopsis thalian	0.732	0.570	0.518	8.1e-44
TAIR|locus:2074723	263	AT3G11280 [Arabidopsis thalian	0.693	0.612	0.542	9.3e-43
TAIR|locus:2150149	267	AT5G01200 [Arabidopsis thalian	0.349	0.303	0.691	4.6e-40
TAIR|locus:2171711	337	AT5G23650 [Arabidopsis thalian	0.771	0.531	0.449	1.1e-37
TAIR|locus:2028461	314	AT1G49010 [Arabidopsis thalian	0.443	0.328	0.647	8.5e-33

TAIR|locus:2175478 AT5G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 113/216 (52%), Positives = 146/216 (67%)

Query:    18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
             WTR EDK+FE+ALV FPE +P RWERIA Q+  KS+ +V+  Y+ LV D+ +I++G V++
Sbjct:     6 WTRSEDKMFEQALVLFPEGSPNRWERIADQLH-KSAGEVREHYEVLVHDVFEIDSGRVDV 64

Query:    78 PGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDW 137
             P Y   MD     A    S G  S  S+  E+ER++G PWT  EH+LFLIGL++YGKGDW
Sbjct:    65 PDY---MDDSAAAAAGWDSAGQISFGSKHGESERKRGTPWTENEHKLFLIGLKRYGKGDW 121

Query:   138 RSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQSYDPSWV 197
             RSISRN VV+RTPTQVASHAQKYFLR NSV+K++KRSSIHDITTVDA  +   S +  W 
Sbjct:   122 RSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDATLAMPGS-NMDWT 180

Query:   198 GPLTDQLETHRLGS-PSDFNDQGRSIGGYHSFRFPM 232
             G     ++  +     S+F  Q  + G +  F F M
Sbjct:   181 GQHGSPVQAPQQQQIMSEFGQQ-LNPGHFEDFGFRM 215

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2159607 AT5G08520 [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 107/216 (49%), Positives = 139/216 (64%)

Query:    18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
             W+RE+D  FERAL    +E+  RWE+IA  VPGKS   ++  Y+ LV D+ +IE+G V L
Sbjct:    12 WSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVEDVTRIESGCVPL 71

Query:    78 PGYEDEMDSPGRVAESGASL--GNNSNRSRDRET-------ERRKGVPWTAEEHRLFLIG 128
             P Y     S G   + GAS   G NS+     +        ERRKG+ WT +EHRLFL+G
Sbjct:    72 PAYGSPEGSNGHAGDEGASSKKGGNSHAGESNQAGKSKSDQERRKGIAWTEDEHRLFLLG 131

Query:   129 LEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSS 188
             L+KYGKGDWRSISRN VV+RTPTQVASHAQKYF+R+NS+ KD++RSSIHDIT+V  A  S
Sbjct:   132 LDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGNADVS 191

Query:   189 SQSYDPSWVGPLTDQLETHRLGSPSDFNDQGRSIGG 224
             +    P   GP+T Q  ++   + ++ N      GG
Sbjct:   192 T----PQ--GPITGQNNSNNNNNNNNNNSSPAVAGG 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q8S9H7 DIVARICATA "Transcription factor DIVARICATA" [Antirrhinum majus (taxid:4151)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 100/185 (54%), Positives = 125/185 (67%)

Query:    18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
             WT  E+K FE AL  F E TP RWER+A +VPGK+  DV R+Y +L  D+  IEAG V +
Sbjct:    26 WTAAENKAFENALAVFDENTPNRWERVAERVPGKTVGDVMRQYKELEDDVSSIEAGFVPV 85

Query:    78 PGYEDEMD-----SPGR----VAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIG 128
             PGY            G       +S  + G  S+  R  E ER+KGVPWT EEH+LFL+G
Sbjct:    86 PGYSTSSPFTLEWGSGHGFDGFKQSYGTGGRKSSSGRPSEQERKKGVPWTEEEHKLFLMG 145

Query:   129 LEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSS 188
             L+KYGKGDWR+ISRN V++RTPTQVASHAQKYF+R  S  KDK+R+SIHDITTV+ + + 
Sbjct:   146 LKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSDNQ 205

Query:   189 SQSYD 193
             + S D
Sbjct:   206 TPSPD 210

GO:0009908 "flower development" evidence=IMP

GO:0048262 "determination of dorsal/ventral asymmetry" evidence=IMP

TAIR|locus:2154508 AT5G58900 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 110/231 (47%), Positives = 145/231 (62%)

Query:    18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
             WT  E+K FE AL  + + TP RW+++A  +PGK+  DV R+Y+DL  D+  IEAGL+ +
Sbjct:    34 WTAAENKAFENALAVYDDNTPDRWQKVAAVIPGKTVSDVIRQYNDLEADVSSIEAGLIPV 93

Query:    78 PGYEDE----MDSPGRVA-----ESGASLGNN-SNRSRDRETERRKGVPWTAEEHRLFLI 127
             PGY       +D  G        + G  + N  S   R  E ER+KGVPWT EEH+LFL+
Sbjct:    94 PGYITSPPFTLDWAGGGGGCNGFKPGHQVCNKRSQAGRSPELERKKGVPWTEEEHKLFLM 153

Query:   128 GLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGS 187
             GL+KYGKGDWR+ISRN V++RTPTQVASHAQKYF+R  S  KDK+R+SIHDITTV+    
Sbjct:   154 GLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLEEE 213

Query:   188 SSQSYDPSW--VGPLTDQL------ETHRLGSPSD-FNDQ-GRSIGGYHSF 228
             +S   + S   VG    +L      +T   G+ +D FN   G +I G HS+
Sbjct:   214 ASLETNKSSIVVGDQRSRLTAFPWNQTDNNGTQADAFNITIGNAISGVHSY 264

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2166459 AT5G05790 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 105/210 (50%), Positives = 137/210 (65%)

Query:    18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
             WT+EE+K FERAL  + ++TP RW ++A  +PGK+  DV R+Y  L  DL  IEAGLV +
Sbjct:    31 WTKEENKKFERALAVYADDTPDRWFKVAAMIPGKTISDVMRQYSKLEEDLFDIEAGLVPI 90

Query:    78 PGYE-------DEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLE 130
             PGY        D++ SP R  ++   L N +   R  + +RRKGVPWT EEHR FL+GL 
Sbjct:    91 PGYRSVTPCGFDQVVSP-RDFDAYRKLPNGA---RGFDQDRRKGVPWTEEEHRRFLLGLL 146

Query:   131 KYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQ 190
             KYGKGDWR+ISRN V S+TPTQVASHAQKY+ R  S  KDK+R SIHDITTV+   +++ 
Sbjct:   147 KYGKGDWRNISRNFVGSKTPTQVASHAQKYYQRQLSGAKDKRRPSIHDITTVNLL-NANL 205

Query:   191 SYDPSWVGPLTDQLETHRLG-SPSDFNDQG 219
             S   S  G L  +    +LG +  D  ++G
Sbjct:   206 SRPSSDHGCLVSKQAEPKLGFTDRDNAEEG 235

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2042872 AT2G38090 [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 96/185 (51%), Positives = 124/185 (67%)

Query:    18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
             WT EE+K FE AL  + ++TP RW R+A  +PGK+  DV ++Y +L  D+  IEAGL+ +
Sbjct:    29 WTAEENKKFENALAFYDKDTPDRWSRVAAMLPGKTVGDVIKQYRELEEDVSDIEAGLIPI 88

Query:    78 PGYEDE---MDSPGRVAESG------------ASLGNNSNRSRDRETERRKGVPWTAEEH 122
             PGY  +   +D  G    SG            A+ G   + +R  E ER+KGVPWT EEH
Sbjct:    89 PGYASDSFTLDWGGYDGASGNNGFNMNGYYFSAAGGKRGSAARTAEHERKKGVPWTEEEH 148

Query:   123 RLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTV 182
             R FL+GL+KYGKGDWR+I+RN V +RTPTQVASHAQKYF+R  +  KDK+RSSIHDITTV
Sbjct:   149 RQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKYFIRQVNGGKDKRRSSIHDITTV 208

Query:   183 DAAGS 187
             +   S
Sbjct:   209 NIPDS 213

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2074723 AT3G11280 [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 89/164 (54%), Positives = 114/164 (69%)

Query:    18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
             WT+EE+K+FERAL  + E++P RW ++A  +PGK+  DV ++Y  L  D+  IEAG V +
Sbjct:    33 WTKEENKMFERALAIYAEDSPDRWFKVASMIPGKTVFDVMKQYSKLEEDVFDIEAGRVPI 92

Query:    78 PGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDW 137
             PGY     SP  +           + +R  + +R+KGVPWT EEHR FL+GL KYGKGDW
Sbjct:    93 PGYP-AASSP--LGFDTDMCRKRPSGARGSDQDRKKGVPWTEEEHRRFLLGLLKYGKGDW 149

Query:   138 RSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITT 181
             R+ISRN VVS+TPTQVASHAQKY+ R  S  KDK+R SIHDITT
Sbjct:   150 RNISRNFVVSKTPTQVASHAQKYYQRQLSGAKDKRRPSIHDITT 193

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2150149 AT5G01200 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 56/81 (69%), Positives = 68/81 (83%)

Query:   103 RSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL 162
             RS   E ER+KGVPWT +EH  FL+GL+KYGKGDWR+I+++ V +RTPTQVASHAQKYFL
Sbjct:   134 RSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFL 193

Query:   163 RMNSVRKDKKRSSIHDITTVD 183
             R  +  KDK+RSSIHDITTV+
Sbjct:   194 RQLTDGKDKRRSSIHDITTVN 214

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2171711 AT5G23650 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 85/189 (44%), Positives = 116/189 (61%)

Query:    18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
             W++++D  FE+AL  + ++T  RW++IA  VPGK+   V   Y+ L  D+  IE+G V L
Sbjct:    13 WSKDDDIAFEKALAIYNDKTEIRWKKIATVVPGKTLEQVIEHYNILARDVMLIESGCVRL 72

Query:    78 PGYEDEMDSPGRVA---ESGASLGNNSNRSRDR-------ETERRKGVPWTAEEHRLFLI 127
             P Y+D ++ P   A   E     G N  +   +       + +RR+GVPW   EHR FL 
Sbjct:    73 PDYDDFLEEPNHNAFGKERSILEGGNDRKYESKHKGKSKLKQKRRRGVPWKPFEHRQFLH 132

Query:   128 GLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVDAAGS 187
             GL+KYGKGDWRSISR+ VV+RT TQVASHAQKYF  +NS  K +KR SIHDIT  +    
Sbjct:   133 GLKKYGKGDWRSISRHCVVTRTSTQVASHAQKYFAHINSEDKKRKRPSIHDITIAENKSI 192

Query:   188 SSQSYDPSW 196
             S++    +W
Sbjct:   193 STKQRPITW 201

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2028461 AT1G49010 [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 68/105 (64%), Positives = 85/105 (80%)

Query:    79 GYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWR 138
             G  ++  +PG    S ++ G  S  SR  E ERRKG+PWT EEHRLFL+GL+K+GKGDWR
Sbjct:   100 GSSEKKPNPGTSGISSSN-GGRSGGSR-AEQERRKGIPWTEEEHRLFLLGLDKFGKGDWR 157

Query:   139 SISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHDITTVD 183
             SISRN V+SRTPTQVASHAQKYF+R+NS+ +D++RSSIHDITTV+
Sbjct:   158 SISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITTVN 202

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0016556 "mRNA modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	3e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-08
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-08
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-08
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	6e-08
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	7e-07
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	1e-04

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 64.7 bits (158), Expect = 3e-14
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 112 RKGVPWTAEEHRLFLIGLEKYGKGDW---RSISRNAVVSR-TPTQVASHAQKYFLR 163
           +  V WT + H  FL  ++K G  DW   + I    VV   T  QVASH QKY L+
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKY 160
           PWT EE  L +  ++K+G G+W  I+++ +  RT  Q  +    Y
Sbjct: 3   PWTPEEDELLIEAVKKHGNGNWSKIAKH-LPGRTDNQCKNRWNNY 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161
           PWT EE  L L  ++KYGK +W  I++  +  RTP Q     +   
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKE-LPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLR 163
              WT EE  L +  ++KYGK +W  I++  +  RT  Q     +     
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKE-LPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 17 SWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
           WT EED+L   A+  + +     WE+IA+++PG++    + R+
Sbjct: 1  PWTEEEDELLLEAVKKYGK---NNWEKIAKELPGRTPKQCRERW 41

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 47.6 bits (114), Expect = 6e-08
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 17 SWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
           WT EED+L    +  + +     WE+IA+++PG+++   + R+
Sbjct: 3  EWTEEEDELLIELVKKYGK---NNWEKIAKELPGRTAEQCRERW 43

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 44.4 bits (106), Expect = 7e-07
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 17 SWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
           WT EED+L   A+        G W +IA+ +PG++    + R+
Sbjct: 3  PWTPEEDELLIEAVKKHG---NGNWSKIAKHLPGRTDNQCKNRW 43

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 115 VPWTAEEHRLFLIGLEKYGKGDWRSISR--NAVVSRTPTQ 152
             WT EE    + G+EKYG G+W  I +    V +RT   
Sbjct: 1   RKWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVD 40

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PLN03212	249	Transcription repressor MYB5; Provisional	99.92
PLN03091	459	hypothetical protein; Provisional	99.9
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.87
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.66
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.63
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.59
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.54
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.48
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.37
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.28
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.27
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.26
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.19
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.12
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.12
PLN03212	249	Transcription repressor MYB5; Provisional	99.11
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.1
KOG0724	335	consensus Zuotin and related molecular chaperones	99.07
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.03
PLN03091	459	hypothetical protein; Provisional	98.96
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.93
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	98.82
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	98.68
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	98.12
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	98.01
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.93
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.93
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.82
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.74
KOG0051	607	consensus RNA polymerase I termination factor, Myb	97.68
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.6
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.46
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.44
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	97.42
KOG1194	534	consensus Predicted DNA-binding protein, contains	97.42
KOG4167	907	consensus Predicted DNA-binding protein, contains	97.33
COG5147	512	REB1 Myb superfamily proteins, including transcrip	97.25
KOG4329	445	consensus DNA-binding protein [General function pr	97.13
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.82
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.74
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.64
KOG1878	1672	consensus Nuclear receptor coregulator SMRT/SMRTER	96.62
KOG0385	971	consensus Chromatin remodeling complex WSTF-ISWI,	96.61
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.93
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	95.55
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	95.52
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.32
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.18
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.1
PLN03162	526	golden-2 like transcription factor; Provisional	94.84
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	94.82
KOG4167	907	consensus Predicted DNA-binding protein, contains	94.73
KOG1194	534	consensus Predicted DNA-binding protein, contains	94.34
KOG4468	782	consensus Polycomb-group transcriptional regulator	94.3
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	93.93
PRK13923	170	putative spore coat protein regulator protein YlbO	93.92
KOG4329	445	consensus DNA-binding protein [General function pr	93.51
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.85
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.71
PRK13923	170	putative spore coat protein regulator protein YlbO	91.9
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	91.37
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	90.93
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	89.52
KOG4282	345	consensus Transcription factor GT-2 and related pr	89.44
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	89.07
KOG3841	455	consensus TEF-1 and related transcription factor,	89.01
KOG4282	345	consensus Transcription factor GT-2 and related pr	87.9
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	84.86
PF11035	344	SnAPC_2_like: Small nuclear RNA activating complex	83.76
KOG4468	782	consensus Polycomb-group transcriptional regulator	83.41
smart00595	89	MADF subfamily of SANT domain.	82.35
KOG2656	445	consensus DNA methyltransferase 1-associated prote	81.82
KOG2009	584	consensus Transcription initiation factor TFIIIB,	80.87

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.92  E-value=9.2e-25  Score=187.28  Aligned_cols=103  Identities=19%  Similarity=0.308  Sum_probs=91.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQV-PGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVA   91 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~v-pgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~   91 (232)
                      -...+||+|||++|.++|++|+..   +|..||..+ ++||.+||++||.++|+            |             
T Consensus        23 lKRg~WT~EEDe~L~~lV~kyG~~---nW~~IAk~~g~gRT~KQCReRW~N~L~------------P-------------   74 (249)
T PLN03212         23 MKRGPWTVEEDEILVSFIKKEGEG---RWRSLPKRAGLLRCGKSCRLRWMNYLR------------P-------------   74 (249)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhCcc---cHHHHHHhhhcCCCcchHHHHHHHhhc------------h-------------
Confidence            457789999999999999999864   499999998 59999999999999987            3             


Q ss_pred             ccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855           92 ESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~  164 (232)
                                         ..+.++||+|||++|++++..||. +|..||+ +|+|||..||++||..++++.
T Consensus        75 -------------------~I~kgpWT~EED~lLlel~~~~Gn-KWs~IAk-~LpGRTDnqIKNRWns~LrK~  126 (249)
T PLN03212         75 -------------------SVKRGGITSDEEDLILRLHRLLGN-RWSLIAG-RIPGRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             -------------------hcccCCCChHHHHHHHHHHHhccc-cHHHHHh-hcCCCCHHHHHHHHHHHHhHH
Confidence                               234569999999999999999998 9999999 899999999999998776554

>PLN03091 hypothetical protein; Provisional

Probab=99.90  E-value=3.6e-23  Score=189.35  Aligned_cols=102  Identities=17%  Similarity=0.347  Sum_probs=91.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 026855           14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVP-GKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAE   92 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp-gRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~   92 (232)
                      ..+.||+|||++|+++|.+||.+   +|..||..++ |||.+||++||.++|+            |              
T Consensus        13 rKg~WTpEEDe~L~~~V~kyG~~---nWs~IAk~~g~gRT~KQCRERW~NyLd------------P--------------   63 (459)
T PLN03091         13 RKGLWSPEEDEKLLRHITKYGHG---CWSSVPKQAGLQRCGKSCRLRWINYLR------------P--------------   63 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcC---CHHHHhhhhccCcCcchHhHHHHhccC------------C--------------
Confidence            46789999999999999999875   4999999985 8999999999999987            3              


Q ss_pred             cCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855           93 SGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~  164 (232)
                                        ..++++||.|||++|++++.+||. +|..||+ +|+|||+.||++||...+++.
T Consensus        64 ------------------~IkKgpWT~EED~lLLeL~k~~Gn-KWskIAk-~LPGRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         64 ------------------DLKRGTFSQQEENLIIELHAVLGN-RWSQIAA-QLPGRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             ------------------cccCCCCCHHHHHHHHHHHHHhCc-chHHHHH-hcCCCCHHHHHHHHHHHHHHH
Confidence                              234569999999999999999999 9999999 899999999999999876654

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.87  E-value=3.2e-22  Score=173.73  Aligned_cols=102  Identities=20%  Similarity=0.309  Sum_probs=93.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVP-GKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAES   93 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp-gRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~   93 (232)
                      .++||.|||.+|++.|.+||.+   +|..||..++ +|+.++||.||.++|.            |               
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~---~W~~i~k~~gl~R~GKSCRlRW~NyLr------------P---------------   58 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKH---NGTALPKLAGLRRCGKSCRLRWTNYLR------------P---------------   58 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCC---CcchhhhhcCCCccchHHHHHhhcccC------------C---------------
Confidence            5899999999999999999987   4999999999 9999999999999987            3               


Q ss_pred             CCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHc
Q 026855           94 GASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMN  165 (232)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~  165 (232)
                                       ..+++.||+|||++++++...||. +|..||+ ++||||+.+|++||.-.++|..
T Consensus        59 -----------------~ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA~-~LPGRTDNeIKN~Wnt~lkkkl  111 (238)
T KOG0048|consen   59 -----------------DLKRGNFSDEEEDLIIKLHALLGN-RWSLIAG-RLPGRTDNEVKNHWNTHLKKKL  111 (238)
T ss_pred             -----------------CccCCCCCHHHHHHHHHHHHHHCc-HHHHHHh-hCCCcCHHHHHHHHHHHHHHHH
Confidence                             345678999999999999999999 9999999 8999999999999987765543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.66  E-value=3.7e-16  Score=148.13  Aligned_cols=98  Identities=24%  Similarity=0.531  Sum_probs=87.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcc
Q 026855           11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRV   90 (232)
Q Consensus        11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~   90 (232)
                      +|-+.+.||.+||.+|..||++|++..   |-+|-+.|||||..||++||.+.|+.                        
T Consensus       356 Psikhg~wt~~ED~~L~~AV~~Yg~kd---w~k~R~~vPnRSdsQcR~RY~nvL~~------------------------  408 (939)
T KOG0049|consen  356 PSVKHGRWTDQEDVLLVCAVSRYGAKD---WAKVRQAVPNRSDSQCRERYTNVLNR------------------------  408 (939)
T ss_pred             ccccCCCCCCHHHHHHHHHHHHhCccc---hhhHHHhcCCccHHHHHHHHHHHHHH------------------------
Confidence            345678999999999999999999875   99999999999999999999999883                        


Q ss_pred             cccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHH
Q 026855           91 AESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASH  156 (232)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~  156 (232)
                                          +.|.+.||-.||+.|+.+|.+||.|+|.+||. ++|.||..|..++
T Consensus       409 --------------------s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~-~Lp~~t~~q~~rr  453 (939)
T KOG0049|consen  409 --------------------SAKVERWTLVEDEQLLYAVKVYGKGNWAKCAM-LLPKKTSRQLRRR  453 (939)
T ss_pred             --------------------hhccCceeecchHHHHHHHHHHccchHHHHHH-HccccchhHHHHH
Confidence                                12345899999999999999999999999999 8999999775554

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.63  E-value=5.4e-16  Score=146.99  Aligned_cols=104  Identities=22%  Similarity=0.490  Sum_probs=93.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccC
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESG   94 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~~   94 (232)
                      ..+||+|||..|+.+|..--.|....|.+|-.+||||+..|.+-||...|+            |                
T Consensus       305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~Ld------------P----------------  356 (939)
T KOG0049|consen  305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLD------------P----------------  356 (939)
T ss_pred             hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccC------------c----------------
Confidence            578999999999999999888888999999999999999999999998887            2                


Q ss_pred             CccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 026855           95 ASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLR  163 (232)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~  163 (232)
                                      ..+.++||.+||.+|+.||.+||..+|.+|.. .||+|+..|||.||.+.+.+
T Consensus       357 ----------------sikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~-~vPnRSdsQcR~RY~nvL~~  408 (939)
T KOG0049|consen  357 ----------------SVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQ-AVPNRSDSQCRERYTNVLNR  408 (939)
T ss_pred             ----------------cccCCCCCCHHHHHHHHHHHHhCccchhhHHH-hcCCccHHHHHHHHHHHHHH
Confidence                            34567999999999999999999889999998 79999999999976655443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.59  E-value=1.7e-15  Score=99.86  Aligned_cols=46  Identities=37%  Similarity=0.703  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC-CCCHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV-SRTPTQVASHAQKYF  161 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~-~RT~~q~~~~~~ky~  161 (232)
                      ++||+|||.+|+++|.+||.++|..||. .|+ +||..||++||++|+
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKDNWKKIAK-RMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTTHHHHHHH-HHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHHHH-HcCCCCCHHHHHHHHHhhC
Confidence            4799999999999999999966999999 799 999999999999873

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.54  E-value=1.1e-14  Score=99.50  Aligned_cols=50  Identities=46%  Similarity=0.677  Sum_probs=45.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCH---HHHHhhhcCCC-CHHHHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDW---RSISRNAVVSR-TPTQVASHAQKYFLR  163 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W---~~Ia~~~v~~R-T~~q~~~~~~ky~~~  163 (232)
                      +..||+|||.+|++||+.||.|+|   +.|++.++.++ |..||++|+||||.+
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            357999999999999999999999   99998555577 999999999999876

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.48  E-value=1e-13  Score=95.24  Aligned_cols=44  Identities=23%  Similarity=0.606  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        18 WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      ||+|||.+|..++..|+.    +|..||++|+.||..+|+.||...+.
T Consensus         1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~~Rt~~~~~~r~~~~l~   44 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN----DWKKIAEHLGNRTPKQCRNRWRNHLR   44 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-----HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHCc----CHHHHHHHHCcCCHHHHHHHHHHHCc
Confidence            999999999999999975    39999999966999999999999543

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.37  E-value=9.5e-13  Score=86.71  Aligned_cols=46  Identities=30%  Similarity=0.801  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC-CCCHHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQVP-GKSSVDVQRRYDDLV   64 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp-gRt~~qc~~ry~~ll   64 (232)
                      ..||+||+++|.+||.+||.+   +|..||..|| |||..||+.||..++
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            589999999999999999876   6999999999 999999999998864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=6.2e-12  Score=117.16  Aligned_cols=101  Identities=21%  Similarity=0.417  Sum_probs=90.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccC
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESG   94 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~~   94 (232)
                      ++.|+.-||+.|..++.+||.+.   |.+||+.++-+|+.||..||.+.++                             
T Consensus         7 ggvwrntEdeilkaav~kyg~nq---ws~i~sll~~kt~rqC~~rw~e~ld-----------------------------   54 (617)
T KOG0050|consen    7 GGVWRNTEDEVLKAAVMKYGKNQ---WSRIASLLNRKTARQCKARWEEWLD-----------------------------   54 (617)
T ss_pred             cceecccHHHHHHHHHHHcchHH---HHHHHHHHhhcchhHHHHHHHHHhC-----------------------------
Confidence            67899999999999999999875   9999999999999999999999887                             


Q ss_pred             CccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHc
Q 026855           95 ASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMN  165 (232)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~  165 (232)
                                     +.++..-|+.|||..||.+...+.. .|..|+.  +-+||..||-.||.+.+-...
T Consensus        55 ---------------p~i~~tews~eederlLhlakl~p~-qwrtIa~--i~gr~~~qc~eRy~~ll~~~~  107 (617)
T KOG0050|consen   55 ---------------PAIKKTEWSREEDERLLHLAKLEPT-QWRTIAD--IMGRTSQQCLERYNNLLDVYV  107 (617)
T ss_pred             ---------------HHHhhhhhhhhHHHHHHHHHHhcCC-ccchHHH--HhhhhHHHHHHHHHHHHHHHH
Confidence                           2344567999999999999999999 9999997  789999999999987755443

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.27  E-value=9.9e-12  Score=79.12  Aligned_cols=44  Identities=39%  Similarity=0.802  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKY  160 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky  160 (232)
                      +||+||+.+|+.++.+||.++|..||+ ++++||..||++||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~-~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAK-ELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHh-HcCCCCHHHHHHHHHHh
Confidence            599999999999999999559999999 89999999999998765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.26  E-value=1e-11  Score=80.20  Aligned_cols=46  Identities=30%  Similarity=0.596  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      .+||++|+.+|+.++..||.++|..||. ++++||+.+|+++|..++
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~-~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKNNWEKIAK-ELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence            4799999999999999999449999999 799999999999988764

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.19  E-value=2.7e-11  Score=83.07  Aligned_cols=43  Identities=37%  Similarity=0.709  Sum_probs=37.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          117 WTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       117 WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      ||+|||.+|+.++.+||. +|..||+ ++++||+.||+.||..++
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~~Rt~~~~~~r~~~~l   43 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAE-HLGNRTPKQCRNRWRNHL   43 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHH-HSTTS-HHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHH-HHCcCCHHHHHHHHHHHC
Confidence            999999999999999998 9999999 788899999999888743

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.12  E-value=1.7e-10  Score=74.47  Aligned_cols=46  Identities=30%  Similarity=0.811  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLV   64 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll   64 (232)
                      ..||++|+.+|..++..||..   +|..||..|++||..||+.+|..++
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~---~w~~Ia~~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            579999999999999999842   3999999999999999999999875

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.12  E-value=2.4e-10  Score=109.32  Aligned_cols=102  Identities=22%  Similarity=0.453  Sum_probs=85.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 026855           14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAES   93 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~   93 (232)
                      ..+.||+||++.|.+++..+|..    |..|+..| ||.+..|+++|..+..-            +              
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~~----W~~Ig~~l-gr~P~~crd~wr~~~~~------------g--------------  431 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGND----WKEIGKAL-GRMPMDCRDRWRQYVKC------------G--------------  431 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhccc----HHHHHHHH-ccCcHHHHHHHHHhhcc------------c--------------
Confidence            57899999999999999998765    99999999 89999999999998651            0              


Q ss_pred             CCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHH-------Hh------------CC-----C-CHHHHHhhhcCCC
Q 026855           94 GASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLE-------KY------------GK-----G-DWRSISRNAVVSR  148 (232)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~-------~~------------G~-----g-~W~~Ia~~~v~~R  148 (232)
                                      ...+.++||.||.++|++.|.       +|            +.     + +|..|++ .++||
T Consensus       432 ----------------~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse-~~~TR  494 (607)
T KOG0051|consen  432 ----------------SKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSE-MLGTR  494 (607)
T ss_pred             ----------------cccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhH-hhcCC
Confidence                            113456899999999999996       33            11     1 7999999 89999


Q ss_pred             CHHHHHHHHHHHHHH
Q 026855          149 TPTQVASHAQKYFLR  163 (232)
Q Consensus       149 T~~q~~~~~~ky~~~  163 (232)
                      +..||+.+|.+...+
T Consensus       495 ~~~qCr~Kw~kl~~~  509 (607)
T KOG0051|consen  495 SRIQCRYKWYKLTTS  509 (607)
T ss_pred             CcchHHHHHHHHHhh
Confidence            999999988887544

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.11  E-value=8.1e-11  Score=101.56  Aligned_cols=49  Identities=29%  Similarity=0.550  Sum_probs=44.7

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhc-CCCCHHHHHHHHHHHH
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAV-VSRTPTQVASHAQKYF  161 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v-~~RT~~q~~~~~~ky~  161 (232)
                      .++++||+|||++|+.+|++||..+|..||+ .+ ++||+.||+.||.+|+
T Consensus        23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~~g~gRT~KQCReRW~N~L   72 (249)
T PLN03212         23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPK-RAGLLRCGKSCRLRWMNYL   72 (249)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhCcccHHHHHH-hhhcCCCcchHHHHHHHhh
Confidence            4456899999999999999999889999999 56 6999999999999996

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.10  E-value=1.6e-10  Score=109.29  Aligned_cols=104  Identities=19%  Similarity=0.377  Sum_probs=91.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 026855           14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAES   93 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~   93 (232)
                      ..+.|+..||..|..++..|+.+.   |.+||+.|.-++..||+.||...++            |               
T Consensus        19 k~gsw~~~EDe~l~~~vk~l~~nn---ws~vas~~~~~~~kq~~~rw~~~ln------------p---------------   68 (512)
T COG5147          19 KGGSWKRTEDEDLKALVKKLGPNN---WSKVASLLISSTGKQSSNRWNNHLN------------P---------------   68 (512)
T ss_pred             cCCCCCCcchhHHHHHHhhccccc---HHHHHHHhcccccccccchhhhhhc------------h---------------
Confidence            356899999999999999997654   9999999988899999999977765            2               


Q ss_pred             CCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855           94 GASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                                       ..+...|+.|||+.|+.+-..+|. .|..||. ++++||..||.++|...+....+
T Consensus        69 -----------------~lk~~~~~~eed~~li~l~~~~~~-~wstia~-~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          69 -----------------QLKKKNWSEEEDEQLIDLDKELGT-QWSTIAD-YKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             -----------------hcccccccHHHHHHHHHHHHhcCc-hhhhhcc-ccCccchHHHHHHHHHHhhhhhc
Confidence                             234458999999999999999999 9999999 89999999999988887776655

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=3.6e-10  Score=102.55  Aligned_cols=169  Identities=40%  Similarity=0.557  Sum_probs=135.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCC----CCchHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC-
Q 026855           15 SSSWTREEDKLFERALVTFPEE----TPGRWERIARQVPG-KSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPG-   88 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~----~~~rW~~IA~~vpg-Rt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~-   88 (232)
                      ...|++++.+.+++|+..|...    ++++|.+++..||+ .+..+.+.+|..+..++..+.++.+.+|.|........ 
T Consensus        31 ~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~  110 (335)
T KOG0724|consen   31 LSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSDTSLAE  110 (335)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCccccCcccccccc
Confidence            3569999999999999999854    78999999999999 99999999999999999999999999998876421000 


Q ss_pred             -------ccc---ccCCccCC--C----CCC------------CCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 026855           89 -------RVA---ESGASLGN--N----SNR------------SRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSI  140 (232)
Q Consensus        89 -------~~~---~~~~~~~~--~----~~~------------~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~I  140 (232)
                             +..   ........  .    ...            ........+++.+|++.++++++.++.++|++.|..|
T Consensus       111 ~~~~~~~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (335)
T KOG0724|consen  111 VEEFYNFWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERERKLVLLALKKDGKIDWRKI  190 (335)
T ss_pred             ccccCCccccccccccCCCCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHHHHHHHhhhcccccccceec
Confidence                   000   00000000  0    000            0112334456779999999999999999999999999


Q ss_pred             HhhhcCCCCHHHHHHHHH-----HHHHHHccccCCCCCCCCCcccccc
Q 026855          141 SRNAVVSRTPTQVASHAQ-----KYFLRMNSVRKDKKRSSIHDITTVD  183 (232)
Q Consensus       141 a~~~v~~RT~~q~~~~~~-----ky~~~~~~~~k~~kr~s~~~~~~~~  183 (232)
                      +++++..|++.|+.+|.+     +|+.+.......+++.++++++.+.
T Consensus       191 ~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  238 (335)
T KOG0724|consen  191 SQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSIEDITTAS  238 (335)
T ss_pred             hhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchhhhhhccc
Confidence            999999999999999998     9999999988999999999998876

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.03  E-value=6.9e-10  Score=70.45  Aligned_cols=44  Identities=34%  Similarity=0.836  Sum_probs=40.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           17 SWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        17 ~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      +||++|+.+|..++..||..   +|..||..|++||..||+.+|..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~---~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcC---CHHHHHhHcCCCCHHHHHHHHHHh
Confidence            59999999999999999842   399999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03091 hypothetical protein; Provisional

Probab=98.96  E-value=7e-10  Score=102.49  Aligned_cols=49  Identities=24%  Similarity=0.493  Sum_probs=44.0

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhc-CCCCHHHHHHHHHHHH
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAV-VSRTPTQVASHAQKYF  161 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v-~~RT~~q~~~~~~ky~  161 (232)
                      .++++||+|||++|+.+|.+||.++|..||+ .+ ++||+.|||.||.+|+
T Consensus        12 lrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk-~~g~gRT~KQCRERW~NyL   61 (459)
T PLN03091         12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWINYL   61 (459)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhCcCCHHHHhh-hhccCcCcchHhHHHHhcc
Confidence            3446899999999999999999989999998 56 5999999999999885

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.93  E-value=6.5e-10  Score=96.65  Aligned_cols=47  Identities=19%  Similarity=0.340  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC-CCCHHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV-SRTPTQVASHAQKYF  161 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~-~RT~~q~~~~~~ky~  161 (232)
                      .+|||.|||.+|+..|++||.|+|..|++ ..+ +|++.+||-||..|+
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k-~~gl~R~GKSCRlRW~NyL   56 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKHNGTALPK-LAGLRRCGKSCRLRWTNYL   56 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCCcchhhh-hcCCCccchHHHHHhhccc
Confidence            47999999999999999999999999999 799 999999999999995

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=98.82  E-value=3.3e-08  Score=101.12  Aligned_cols=131  Identities=24%  Similarity=0.376  Sum_probs=95.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH----------HHHHHhhcCCCCC------
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL----------DLRKIEAGLVELP------   78 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~----------~~~~ie~g~~~~p------   78 (232)
                      =..||+.|-..|++|+.+||.+.   .+.||..|.|||..+|+.+++.+..          -+..||.|...+.      
T Consensus       824 f~~w~~~~f~~f~~~~~~~gr~~---~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~  900 (1033)
T PLN03142        824 FSTWSRRDFNAFIRACEKYGRND---IKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIM  900 (1033)
T ss_pred             cCcccHHHHHHHHHHHHHhCHhH---HHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            34699999999999999999875   9999999999999999987665432          1345555543321      


Q ss_pred             --------CCCCCCCCCCcccccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhh-------
Q 026855           79 --------GYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRN-------  143 (232)
Q Consensus        79 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~-------  143 (232)
                              .|..+...+.+                .++  ..++..+|+|||+.||..+.+||.|+|..|..+       
T Consensus       901 ~~~~~k~~~~~~p~~~l~~----------------~~~--~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f  962 (1033)
T PLN03142        901 KAIGKKLDRYKNPWLELKI----------------QYG--QNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLF  962 (1033)
T ss_pred             HHHHHHHHHccCcHHHcee----------------ecC--CCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCce
Confidence                    22222111111                011  123447999999999999999999999999654       


Q ss_pred             ----hcCCCCHHHHHHHHHHHHHHHcc
Q 026855          144 ----AVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       144 ----~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                          |+.+||+.++..|+.-++.-+.+
T Consensus       963 ~fd~~~~srt~~~~~~r~~~l~~~~~~  989 (1033)
T PLN03142        963 RFDWFVKSRTPQELARRCDTLIRLIEK  989 (1033)
T ss_pred             eeehhhccCCHHHHHHHHHHHHHHHHH
Confidence                79999999999999866655543

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.68  E-value=2.4e-08  Score=91.96  Aligned_cols=49  Identities=33%  Similarity=0.617  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~  164 (232)
                      ..||.+|+-+||+|+.+||-|+|..||. +|++||..+|+.||.|+|..-
T Consensus        73 ~~WtadEEilLLea~~t~G~GNW~dIA~-hIGtKtkeeck~hy~k~fv~s  121 (438)
T KOG0457|consen   73 PSWTADEEILLLEAAETYGFGNWQDIAD-HIGTKTKEECKEHYLKHFVNS  121 (438)
T ss_pred             CCCChHHHHHHHHHHHHhCCCcHHHHHH-HHcccchHHHHHHHHHHHhcC
Confidence            3699999999999999999999999999 899999999999999998653

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.12  E-value=2.8e-06  Score=75.81  Aligned_cols=47  Identities=30%  Similarity=0.569  Sum_probs=44.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLR  163 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~  163 (232)
                      .|+.+|+-+|+++++..|-|+|..||. +|+.|+..+|++||-||+..
T Consensus        65 ~WgadEEllli~~~~TlGlGNW~dIad-yiGsr~kee~k~HylK~y~e  111 (432)
T COG5114          65 GWGADEELLLIECLDTLGLGNWEDIAD-YIGSRAKEEIKSHYLKMYDE  111 (432)
T ss_pred             CcCchHHHHHHHHHHhcCCCcHHHHHH-HHhhhhhHHHHHHHHHHHhh
Confidence            699999999999999999999999999 89999999999999998763

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=98.01  E-value=6.2e-06  Score=76.87  Aligned_cols=42  Identities=36%  Similarity=0.654  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQ  158 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~  158 (232)
                      ..||.+|-.+||+||+.||. +|.+||+ +|++||..||.-|+-
T Consensus       280 k~WS~qE~~LLLEGIe~ygD-dW~kVA~-HVgtKt~EqCIl~FL  321 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGD-DWDKVAR-HVGTKTKEQCILHFL  321 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhh-hHHHHHH-HhCCCCHHHHHHHHH
Confidence            48999999999999999998 9999999 799999999999754

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.93  E-value=4.1e-05  Score=52.25  Aligned_cols=47  Identities=17%  Similarity=0.313  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchH---HHHHHhCC-CC-CHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRW---ERIARQVP-GK-SSVDVQRRYDDLV   64 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW---~~IA~~vp-gR-t~~qc~~ry~~ll   64 (232)
                      .-.||+||..+|.+||..||.+.   |   ..|++.+. .+ |..||+.|++.+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~---~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPD---WATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCc---ccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999754   9   99999886 45 9999999998764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.93  E-value=1.7e-05  Score=73.51  Aligned_cols=48  Identities=25%  Similarity=0.441  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHH
Q 026855           14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLV   64 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll   64 (232)
                      -...||.+|.-+|.+|+..||-|+   |..||.+|+.||.++|++||.+..
T Consensus        71 ~~~~WtadEEilLLea~~t~G~GN---W~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   71 LDPSWTADEEILLLEAAETYGFGN---WQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCChHHHHHHHHHHHHhCCCc---HHHHHHHHcccchHHHHHHHHHHH
Confidence            367899999999999999999885   999999999999999999998764

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.82  E-value=1.9e-05  Score=73.66  Aligned_cols=45  Identities=22%  Similarity=0.537  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      ...||.+|.-+|.++|..|+.+    |.+||.+|++||++||+.|+..+
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDd----W~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDD----WDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhh----HHHHHHHhCCCCHHHHHHHHHcC
Confidence            4589999999999999999876    99999999999999999999876

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.74  E-value=4e-05  Score=73.13  Aligned_cols=43  Identities=28%  Similarity=0.527  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQ  158 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~  158 (232)
                      +..||++|.-+||++|..||. +|.+||. +|++||..||..|+-
T Consensus       253 ~~~WT~qE~lLLLE~ie~y~d-dW~kVa~-hVg~ks~eqCI~kFL  295 (506)
T KOG1279|consen  253 RPNWTEQETLLLLEAIEMYGD-DWNKVAD-HVGTKSQEQCILKFL  295 (506)
T ss_pred             CCCccHHHHHHHHHHHHHhcc-cHHHHHh-ccCCCCHHHHHHHHH
Confidence            347999999999999999999 9999999 899999999999543

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=97.68  E-value=0.00029  Score=68.18  Aligned_cols=113  Identities=12%  Similarity=0.281  Sum_probs=76.2

Q ss_pred             CCCCCCCHHHHHHHHHHHH-------HC------------CCC---CCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 026855           13 STSSSWTREEDKLFERALV-------TF------------PEE---TPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKI   70 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~-------~~------------p~~---~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~i   70 (232)
                      ...+.||.||-+.|.++|.       +|            |++   ....|..|++.+.+|+..||+.+|.+++..-   
T Consensus       434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~---  510 (607)
T KOG0051|consen  434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSP---  510 (607)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhH---
Confidence            3688999999999999995       33            222   3567999999999999999999999987631   


Q ss_pred             hhcCCCCCCCCCCCCCCCcccccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCC-
Q 026855           71 EAGLVELPGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRT-  149 (232)
Q Consensus        71 e~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT-  149 (232)
                              ....    .++                    ......-|..|+=..|..  ...+.=+|..|+. +.|+.. 
T Consensus       511 --------s~n~----~~~--------------------~~~~~~v~l~ErL~dl~~--~e~~~IDW~~l~~-~~~g~~~  555 (607)
T KOG0051|consen  511 --------SFNK----RQE--------------------SKGSDMVWLLERLSDLDL--TEESPIDWKSLAE-YAPGEST  555 (607)
T ss_pred             --------Hhhc----ccc--------------------cccchhHHHHHHHHhccc--ccCCccCHHHHHH-hCCCCCc
Confidence                    1000    000                    000011365554333322  2444449999999 799998 


Q ss_pred             HHHHHHHHHHHHHH
Q 026855          150 PTQVASHAQKYFLR  163 (232)
Q Consensus       150 ~~q~~~~~~ky~~~  163 (232)
                      +.+|+.+|-+....
T Consensus       556 ~~e~r~q~~~lk~~  569 (607)
T KOG0051|consen  556 GEELRLQFERLKKK  569 (607)
T ss_pred             HHHHHHHHHhHhhc
Confidence            99999977665444

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.60  E-value=9.5e-05  Score=70.61  Aligned_cols=47  Identities=26%  Similarity=0.514  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      +....||++|+-+|.++|.+|+.+    |.+||.+|.+||..||+.++..+
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~dd----W~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGDD----WNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhccc----HHHHHhccCCCCHHHHHHHHHhc
Confidence            346789999999999999999877    99999999999999999999766

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.46  E-value=0.001  Score=56.41  Aligned_cols=112  Identities=18%  Similarity=0.224  Sum_probs=76.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC---CCCHHHHHHHHHHHHHHH--HHHhhcC-CCC-CCCCCCCCCCCc
Q 026855           17 SWTREEDKLFERALVTFPEETPGRWERIARQVP---GKSSVDVQRRYDDLVLDL--RKIEAGL-VEL-PGYEDEMDSPGR   89 (232)
Q Consensus        17 ~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp---gRt~~qc~~ry~~ll~~~--~~ie~g~-~~~-p~~~~~~~~~~~   89 (232)
                      .|++.||-+|+.||..-    . .-+.|+.-|+   .-|..++.+||..++-|-  ..+.... ..+ |....       
T Consensus         1 rW~~~DDl~Li~av~~~----~-~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~-------   68 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQT----N-DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIA-------   68 (199)
T ss_pred             CCCchhhHHHHHHHHHh----c-CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhh-------
Confidence            49999999999999872    1 2788888876   459999999999997642  1111100 000 00000       


Q ss_pred             ccccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCC--CHHHHHhh----hcCCCCHHHHHHHHHHH
Q 026855           90 VAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKG--DWRSISRN----AVVSRTPTQVASHAQKY  160 (232)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g--~W~~Ia~~----~v~~RT~~q~~~~~~ky  160 (232)
                                          ......+||.+|+++|.........+  .+..|=..    |-++||+.+...||+..
T Consensus        69 --------------------~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lm  125 (199)
T PF13325_consen   69 --------------------AIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLM  125 (199)
T ss_pred             --------------------cccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHH
Confidence                                01123589999999999977666443  56666221    88999999999999954

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.44  E-value=0.00011  Score=69.38  Aligned_cols=50  Identities=24%  Similarity=0.476  Sum_probs=46.2

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL  162 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~  162 (232)
                      ++++-|+-.||+.|-.++.+||+..|+.|+. .+.-+|+.||+.+|..|+.
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~s-ll~~kt~rqC~~rw~e~ld   54 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIAS-LLNRKTARQCKARWEEWLD   54 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHH-HHhhcchhHHHHHHHHHhC
Confidence            4567899999999999999999999999999 8999999999999998863

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=97.42  E-value=0.00035  Score=54.63  Aligned_cols=52  Identities=31%  Similarity=0.539  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHhh-----------hcCCCCHHHHHHHHHHHHHHH
Q 026855          113 KGVPWTAEEHRLFLIGLEKYGK---GDWRSISRN-----------AVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       113 ~~~~WT~eEd~~l~~~l~~~G~---g~W~~Ia~~-----------~v~~RT~~q~~~~~~ky~~~~  164 (232)
                      ++..||+|||+.||..+.+||-   |.|..|..+           |+.+||+.++..|..-.+.-+
T Consensus        48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            3458999999999999999999   899999775           899999999999998655444

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=97.42  E-value=0.0014  Score=61.21  Aligned_cols=50  Identities=4%  Similarity=-0.121  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      ..||.++.-+++++|++||. ....|+- -|+.++--|+.+....|.+|+.-
T Consensus       370 ~~~~T~~~la~v~~I~~~~~-~~~pl~w-rik~t~cmee~e~l~~~~Rr~mf  419 (534)
T KOG1194|consen  370 RCFDTPAALALIDNIKRKHH-MCVPLVW-RVKQTKCMEENEILNEEARRQMF  419 (534)
T ss_pred             cccCcHHHHHHHHHHHHhcc-Ccchhhh-HhcCcchhhHHHHHHHHHHHHHH
Confidence            57999999999999999999 7888887 69999999999988888776653

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=97.33  E-value=0.00035  Score=68.47  Aligned_cols=45  Identities=29%  Similarity=0.488  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      +..||..|.++|.+||..|.++    +.+|+.+|++||++||.++|..-
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~KD----F~~v~km~~~KtVaqCVeyYYtW  663 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYSKD----FIFVQKMVKSKTVAQCVEYYYTW  663 (907)
T ss_pred             cccccHHHHHHHHHHHHHhccc----HHHHHHHhccccHHHHHHHHHHH
Confidence            6789999999999999999876    99999999999999999998644

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=97.25  E-value=0.00042  Score=66.27  Aligned_cols=51  Identities=22%  Similarity=0.378  Sum_probs=45.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDL   67 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~   67 (232)
                      -+...|+.+||+.|..+-..+|-.    |..||..++|||..+|.++|...+.+.
T Consensus        70 lk~~~~~~eed~~li~l~~~~~~~----wstia~~~d~rt~~~~~ery~~~~~~~  120 (512)
T COG5147          70 LKKKNWSEEEDEQLIDLDKELGTQ----WSTIADYKDRRTAQQCVERYVNTLEDL  120 (512)
T ss_pred             cccccccHHHHHHHHHHHHhcCch----hhhhccccCccchHHHHHHHHHHhhhh
Confidence            457789999999999999998653    999999999999999999999988753

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=97.13  E-value=0.003  Score=57.77  Aligned_cols=43  Identities=37%  Similarity=0.516  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHA  157 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~  157 (232)
                      ...|+++|=+.|.++|+.||| ++..|.++-|++|+..+|-.+|
T Consensus       277 l~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVeyY  319 (445)
T KOG4329|consen  277 LSGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVEYY  319 (445)
T ss_pred             cccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHHHH
Confidence            347999999999999999999 9999999899999999999853

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.82  E-value=0.0016  Score=47.45  Aligned_cols=53  Identities=21%  Similarity=0.475  Sum_probs=37.8

Q ss_pred             CCCCHHHHHHHHHHHHH------CC--CCC-C-chHHHHHHhCC----CCCHHHHHHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVT------FP--EET-P-GRWERIARQVP----GKSSVDVQRRYDDLVLDLR   68 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~------~p--~~~-~-~rW~~IA~~vp----gRt~~qc~~ry~~ll~~~~   68 (232)
                      ..||.+|..+|+.++..      |.  ... . .-|..||..|.    .||+.||+.+|+.|.....
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk   68 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYK   68 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            47999999999999877      21  111 2 25999999986    5899999999999987654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.74  E-value=0.0026  Score=57.22  Aligned_cols=48  Identities=21%  Similarity=0.423  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      ..-|+..|.-+|++++...|-|+   |+-||.+++.|+.++|+.||.++..
T Consensus        63 ~e~WgadEEllli~~~~TlGlGN---W~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGN---WEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCc---HHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            44699999999999999999875   9999999998999999999987754

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.64  E-value=0.0049  Score=44.85  Aligned_cols=52  Identities=21%  Similarity=0.433  Sum_probs=36.9

Q ss_pred             CCCHHHHHHHHHHHHH------hCC--C-----CHHHHHhhh---cCCCCHHHHHHHHHHHHHHHccc
Q 026855          116 PWTAEEHRLFLIGLEK------YGK--G-----DWRSISRNA---VVSRTPTQVASHAQKYFLRMNSV  167 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~------~G~--g-----~W~~Ia~~~---v~~RT~~q~~~~~~ky~~~~~~~  167 (232)
                      .||.+|-..||.++..      |+.  .     -|..||.++   =-.||+.||+.+|.....+.+..
T Consensus         3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~   70 (90)
T PF13837_consen    3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKI   70 (90)
T ss_dssp             SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6999999999999887      321  1     499999852   13799999999999877776655

>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]

Probab=96.62  E-value=0.0025  Score=66.64  Aligned_cols=146  Identities=21%  Similarity=0.165  Sum_probs=82.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHH-HHHHhhcC--CCCCCCCC---------
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLD-LRKIEAGL--VELPGYED---------   82 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~-~~~ie~g~--~~~p~~~~---------   82 (232)
                      +..|+.+|-+.|+.-+..++++    +..||++|..+|+.||.-.|..-... ......++  ...+.+..         
T Consensus       225 ~n~Ws~~Ek~~fk~rf~~H~kn----f~~~as~~erkSv~d~vlfyy~nkkte~yk~~~~r~~~r~~s~~~~~~~~~~~E  300 (1672)
T KOG1878|consen  225 MNEWSPEEKELFKSRFAQHVKN----FGLIASFFERKSVSDCVLFYYLNKKTENYKKLVRRPKKRSQSYKVGAFPSPEEE  300 (1672)
T ss_pred             hhhccccccccccchhhhcCcc----hhhhhhhhcccchhhceeeeeecccchhHHhhhccccccchhccccccCChHhh
Confidence            5689999999999999998776    99999999999999998777422110 00001110  00010000         


Q ss_pred             ---CCCCCCcccc--------cCCc-cCCCC--CCCC--cccccccCCCCCCH------HHHHHHHHHHHHhCCCCHHHH
Q 026855           83 ---EMDSPGRVAE--------SGAS-LGNNS--NRSR--DRETERRKGVPWTA------EEHRLFLIGLEKYGKGDWRSI  140 (232)
Q Consensus        83 ---~~~~~~~~~~--------~~~~-~~~~~--~~~~--~~~~~~~~~~~WT~------eEd~~l~~~l~~~G~g~W~~I  140 (232)
                         ..+...+...        ...+ ...+.  .+..  ....+.-......-      ||-+.--.|+..+|+ +|.+|
T Consensus       301 le~~ee~~~ledpkes~~~~~~~d~~~~~~~~resv~~e~~~~Ple~~ei~a~e~de~see~ev~k~Glveh~R-~~aai  379 (1672)
T KOG1878|consen  301 LEKEEEKPELEDPKESFPKNKLIDYFGERTVERESVNGEEPFMPLEPYEIFAIEPDELSEEMEVAKSGLVEHGR-EWAAI  379 (1672)
T ss_pred             hhhhhhcccccCccccccccccccccccccccccccccCCCCCCCCCccccccCccccchhhhhhhccchhhhh-hHHHh
Confidence               0000000000        0000 00000  0000  00001100112222      334466677888889 99999


Q ss_pred             HhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855          141 SRNAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       141 a~~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      +. .|.++|..||.+.|.+|-.|.+.
T Consensus       380 ~p-~vvt~tes~c~na~a~~~~r~N~  404 (1672)
T KOG1878|consen  380 LP-KVVTKTESQCKNAYAKYKNRHNL  404 (1672)
T ss_pred             cC-ccceecccchhhHHHhhhhhhcc
Confidence            99 89999999999999899877775

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]

Probab=96.61  E-value=0.0063  Score=60.61  Aligned_cols=137  Identities=19%  Similarity=0.247  Sum_probs=82.8

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHH----------HHHHhhcCCCCCCCCCCC
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLD----------LRKIEAGLVELPGYEDEM   84 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~----------~~~ie~g~~~~p~~~~~~   84 (232)
                      -..||+-|-..|+++..+|+.++   -+.||+.+.+ |++++..+.+-+-..          +..|+.|...+..-....
T Consensus       795 ft~w~k~df~~fi~a~eKygr~d---i~~ia~~~e~-~~eev~~y~rvfwer~~el~d~ek~~~~ie~~e~~i~r~~~~~  870 (971)
T KOG0385|consen  795 FTNWTKRDFNQFIKANEKYGRDD---IENIAAEVEG-TPEEVGEYARVFWERLEELSDIEKIIYQIERGEKRIQRGDSIK  870 (971)
T ss_pred             ccchhhhhHHHHHHHhhccCcch---hhhhHHhhcC-CHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHhhhhHHHHHH
Confidence            34699999999999999999876   8899999988 999998765533221          123444433321000000


Q ss_pred             CCCCcccccCCccCCCCCCCC-cccccccCCCCCCHHHHHHHHHHHHHhCCCC---HHHHHhh-----------hcCCCC
Q 026855           85 DSPGRVAESGASLGNNSNRSR-DRETERRKGVPWTAEEHRLFLIGLEKYGKGD---WRSISRN-----------AVVSRT  149 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~---W~~Ia~~-----------~v~~RT  149 (232)
                        ..++...  ....+..... .++.  .++...|++||+.|+.+|.++|-++   |..+-..           |+..||
T Consensus       871 --~~ld~k~--~~~k~p~~l~i~~~~--nk~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frfdw~~~sRt  944 (971)
T KOG0385|consen  871 --KALDDKI--ARYKAPHQLRIQYGT--NKGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRFDWFIKSRT  944 (971)
T ss_pred             --HHHhhhH--hhhcCchheeeeecc--ccCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCcccccceeeehhh
Confidence              0000000  0000000000 1112  2456899999999999999999864   5555332           788899


Q ss_pred             HHHHHHHHHHHH
Q 026855          150 PTQVASHAQKYF  161 (232)
Q Consensus       150 ~~q~~~~~~ky~  161 (232)
                      ..+...|+.-|+
T Consensus       945 ~~el~Rr~ntli  956 (971)
T KOG0385|consen  945 AMELQRRCNTLI  956 (971)
T ss_pred             HHHHHhcCCeeE
Confidence            888777766553

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.93  E-value=0.017  Score=41.12  Aligned_cols=54  Identities=15%  Similarity=0.401  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCC---C--C--------CchHHHHHHhCC-----CCCHHHHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPE---E--T--------PGRWERIARQVP-----GKSSVDVQRRYDDLVLDLR   68 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~---~--~--------~~rW~~IA~~vp-----gRt~~qc~~ry~~ll~~~~   68 (232)
                      ...||.+|..+|+++|.+|+.   +  .        ..-|+.||..|.     .||..||+..|.++...++
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K   73 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK   73 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            357999999999999999843   1  1        234999999885     5999999999999977654

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=95.55  E-value=0.045  Score=42.76  Aligned_cols=56  Identities=21%  Similarity=0.521  Sum_probs=46.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC------------CCCHHHHHHHHHHHHHHH
Q 026855           12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVP------------GKSSVDVQRRYDDLVLDL   67 (232)
Q Consensus        12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp------------gRt~~qc~~ry~~ll~~~   67 (232)
                      .+....||++||.-|...+.+||-++++.|+.|-..+-            .||+.++..|-..|+.-+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            56688999999999999999999988888999988754            899999999999887654

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=95.52  E-value=0.027  Score=51.86  Aligned_cols=49  Identities=14%  Similarity=0.362  Sum_probs=43.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      .+...-+||.+|.+.|-+||.++|-+    +..|++.+|.|+.+|+.-.|.+-
T Consensus       361 ~~~~~~~Ws~~e~ekFYKALs~wGtd----F~LIs~lfP~R~RkqIKaKfi~E  409 (507)
T COG5118         361 KKKGALRWSKKEIEKFYKALSIWGTD----FSLISSLFPNRERKQIKAKFIKE  409 (507)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHhcch----HHHHHHhcCchhHHHHHHHHHHH
Confidence            33456689999999999999999876    99999999999999999999754

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.32  E-value=0.038  Score=38.63  Aligned_cols=49  Identities=16%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             CCCCHHHHHHHHHHHHHhC------CC--CHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYG------KG--DWRSISRNAVVSRTPTQVASHAQKYFLR  163 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G------~g--~W~~Ia~~~v~~RT~~q~~~~~~ky~~~  163 (232)
                      .++|+|||..|+..|..+.      .|  =|+.+++..+...|-..-++||.|.+..
T Consensus         3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~   59 (65)
T PF08914_consen    3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRG   59 (65)
T ss_dssp             ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT--
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            4799999999999997653      22  3999999544488888899977665443

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.18  E-value=0.02  Score=46.85  Aligned_cols=50  Identities=24%  Similarity=0.476  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCC--C-CchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEE--T-PGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~--~-~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      ...||.|||.+|...|..|=..  | -.-++.|+..| +||..-|--||...+.
T Consensus         4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR   56 (161)
T ss_pred             ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence            4579999999999999998432  2 34489999999 8999999999988776

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.10  E-value=0.1  Score=37.03  Aligned_cols=49  Identities=18%  Similarity=0.225  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHHHHh-----CCC-----------CHHHHHhhh----cCCCCHHHHHHHHHHHHHHH
Q 026855          116 PWTAEEHRLFLIGLEKY-----GKG-----------DWRSISRNA----VVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~-----G~g-----------~W~~Ia~~~----v~~RT~~q~~~~~~ky~~~~  164 (232)
                      .||.+|-..|++.|.+|     |+.           -|..|+..|    .+.||..||+..|.++....
T Consensus         4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            69999999999999998     422           599998852    34799999999999886554

>PLN03162 golden-2 like transcription factor; Provisional

Probab=94.84  E-value=0.33  Score=44.78  Aligned_cols=57  Identities=32%  Similarity=0.378  Sum_probs=43.4

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHhCCC--CHHHHHhh-hcCCCCHHHHHHHHHHHHHHHccc
Q 026855          111 RRKGVPWTAEEHRLFLIGLEKYGKG--DWRSISRN-AVVSRTPTQVASHAQKYFLRMNSV  167 (232)
Q Consensus       111 ~~~~~~WT~eEd~~l~~~l~~~G~g--~W~~Ia~~-~v~~RT~~q~~~~~~ky~~~~~~~  167 (232)
                      ++.+-.||+|=|++|+++|.+.|..  -=+.|-+- -|++=|..+|++|-|||...+++.
T Consensus       234 KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l  293 (526)
T PLN03162        234 KKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL  293 (526)
T ss_pred             CCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence            3445689999999999999999942  23444431 278899999999999997766543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=94.82  E-value=0.063  Score=49.54  Aligned_cols=41  Identities=24%  Similarity=0.449  Sum_probs=38.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHH
Q 026855          113 KGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVAS  155 (232)
Q Consensus       113 ~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~  155 (232)
                      ...+||.+|-.+|-.||..+|. ++..||. ++|+|...||+-
T Consensus       364 ~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~-lfP~R~RkqIKa  404 (507)
T COG5118         364 GALRWSKKEIEKFYKALSIWGT-DFSLISS-LFPNRERKQIKA  404 (507)
T ss_pred             CCCcccHHHHHHHHHHHHHhcc-hHHHHHH-hcCchhHHHHHH
Confidence            3458999999999999999999 9999998 999999999999

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=94.73  E-value=0.055  Score=53.61  Aligned_cols=43  Identities=30%  Similarity=0.444  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKY  160 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky  160 (232)
                      -||..|-++|-.||-.|-+ ++..|++ +|++||..||-.+|-.+
T Consensus       621 ~WTp~E~~lF~kA~y~~~K-DF~~v~k-m~~~KtVaqCVeyYYtW  663 (907)
T KOG4167|consen  621 KWTPLERKLFNKALYTYSK-DFIFVQK-MVKSKTVAQCVEYYYTW  663 (907)
T ss_pred             cccHHHHHHHHHHHHHhcc-cHHHHHH-HhccccHHHHHHHHHHH
Confidence            5999999999999999999 9999999 89999999999986544

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=94.34  E-value=0.2  Score=47.34  Aligned_cols=130  Identities=14%  Similarity=0.187  Sum_probs=77.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhh----cCC---CCCCCCCCCCCC
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEA----GLV---ELPGYEDEMDSP   87 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~----g~~---~~p~~~~~~~~~   87 (232)
                      ...||-++--+++..|.+|+++    ..-|+-.+..++.-|+.+-..+..... .++.    .++   ...+...+..+.
T Consensus       369 n~~~~T~~~la~v~~I~~~~~~----~~pl~wrik~t~cmee~e~l~~~~Rr~-mfea~~~~s~v~~ge~anwk~dm~~l  443 (534)
T KOG1194|consen  369 NRCFDTPAALALIDNIKRKHHM----CVPLVWRVKQTKCMEENEILNEEARRQ-MFEATMTYSRVPKGEIANWKKDMMAL  443 (534)
T ss_pred             ccccCcHHHHHHHHHHHHhccC----cchhhhHhcCcchhhHHHHHHHHHHHH-HHHHHHHhcccccchhccCcchhhhc
Confidence            4579999999999999999987    677888887777777766554332210 0111    000   111111111110


Q ss_pred             Cc--ccc--cCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHH
Q 026855           88 GR--VAE--SGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASH  156 (232)
Q Consensus        88 ~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~  156 (232)
                      ..  ...  ........+.+  +  ......-.||++|-. ++....-||. ....||. ++.++|+.|+.-+
T Consensus       444 ~~r~e~~~p~~d~~~t~~~~--~--~~v~~~~~wSp~e~s-~ircf~~y~~-~fe~ia~-l~~tktp~Q~~~f  509 (534)
T KOG1194|consen  444 KGRFERFTPELDTTATNGNR--S--GKVRINYGWSPEEKS-AIRCFHWYKD-NFELIAE-LMATKTPEQIKKF  509 (534)
T ss_pred             cccccccCCCCCCChhhcCc--C--CceeecCCCCCcccc-cccCchhhcc-chHHHHH-HhcCCCHHHHHHH
Confidence            00  000  00001111111  1  111123469999988 8888999998 9999998 9999999999883

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]

Probab=94.30  E-value=0.068  Score=51.89  Aligned_cols=52  Identities=31%  Similarity=0.459  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHh---------hhcCCCCHHHHHHHHHHHHHHHcc
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISR---------NAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~---------~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      +..||..|...|..||+.||+ ++.+|-.         --+..+|..|++-||-+...++++
T Consensus        88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k  148 (782)
T KOG4468|consen   88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNK  148 (782)
T ss_pred             ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHh
Confidence            348999999999999999999 9999921         026678889999988777666654

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=93.93  E-value=0.081  Score=43.35  Aligned_cols=50  Identities=20%  Similarity=0.321  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-C-----CHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855          115 VPWTAEEHRLFLIGLEKYGK-G-----DWRSISRNAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~-g-----~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      ..||+|||.+|-+.|-+|=+ |     .+..+++  -=+||+..|.-||+.|.++...
T Consensus         5 DAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~--~L~RTsAACGFRWNs~VRkqY~   60 (161)
T TIGR02894         5 DAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGR--ALNRTAAACGFRWNAYVRKQYE   60 (161)
T ss_pred             cccccHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHcccHHHhcchHHHHHHHHHH
Confidence            47999999999999988832 2     4677776  4689999999999999886654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.92  E-value=0.079  Score=43.91  Aligned_cols=50  Identities=18%  Similarity=0.409  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCC---chHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETP---GRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~---~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      ...||.|||.+|.+.|..|.....   .-++.++..| +||...|..||...+.
T Consensus         5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr   57 (170)
T PRK13923          5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR   57 (170)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence            457999999999999999876442   3378888888 7999999999965544

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=93.51  E-value=0.12  Score=47.47  Aligned_cols=48  Identities=25%  Similarity=0.367  Sum_probs=41.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHH-HHhCCCCCHHHHHHHHHHHH
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERI-ARQVPGKSSVDVQRRYDDLV   64 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~I-A~~vpgRt~~qc~~ry~~ll   64 (232)
                      .....||++|=..|+..|..||++    +..| |..|+.|++-+|..+|..-.
T Consensus       275 d~l~~wsEeEcr~FEegl~~yGKD----F~lIr~nkvrtRsvgElVeyYYlWK  323 (445)
T KOG4329|consen  275 DDLSGWSEEECRNFEEGLELYGKD----FHLIRANKVRTRSVGELVEYYYLWK  323 (445)
T ss_pred             cccccCCHHHHHHHHHHHHHhccc----HHHHHhcccccchHHHHHHHHHHhh
Confidence            446779999999999999999987    7777 56899999999999997553

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.85  E-value=0.41  Score=35.00  Aligned_cols=48  Identities=25%  Similarity=0.384  Sum_probs=34.8

Q ss_pred             CCCHHHHHHHHHHHHHh---C----CC-----CHHHHHhhh----cCCCCHHHHHHHHHHHHHH
Q 026855          116 PWTAEEHRLFLIGLEKY---G----KG-----DWRSISRNA----VVSRTPTQVASHAQKYFLR  163 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~---G----~g-----~W~~Ia~~~----v~~RT~~q~~~~~~ky~~~  163 (232)
                      .||+++++.||+++...   |    .+     .|..|+.+|    -...|..||++||+.+-+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            39999999999998664   1    12     588898752    3345789999998765333

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.71  E-value=0.32  Score=35.57  Aligned_cols=52  Identities=23%  Similarity=0.471  Sum_probs=39.6

Q ss_pred             CCCHHHHHHHHHHHHHC------C-CCC--CchHHHHHHhCC-----CCCHHHHHHHHHHHHHHHH
Q 026855           17 SWTREEDKLFERALVTF------P-EET--PGRWERIARQVP-----GKSSVDVQRRYDDLVLDLR   68 (232)
Q Consensus        17 ~WT~eEd~~L~~av~~~------p-~~~--~~rW~~IA~~vp-----gRt~~qc~~ry~~ll~~~~   68 (232)
                      .||+++++.|.+++...      + .+.  +.-|..|+..|.     ..|..||..||..+...-.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~   66 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYR   66 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Confidence            59999999999998653      1 221  445999999887     3578999999998876543

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=91.90  E-value=0.2  Score=41.49  Aligned_cols=49  Identities=12%  Similarity=0.159  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC------HHHHHhhhcCCCCHHHHHHHHHHHHHHHc
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGD------WRSISRNAVVSRTPTQVASHAQKYFLRMN  165 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~------W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~  165 (232)
                      ..||.|+|.+|-+.|-.|++..      ...++.  .=+||..+|.-||+.+.+++.
T Consensus         6 dawt~e~d~llae~vl~~i~eg~tql~afe~~g~--~L~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          6 DAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGD--ALKRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             hhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHH--HHhhhHHHHHhHHHHHHHHHH
Confidence            4799999999999999997642      333343  457999999999987765443

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=91.37  E-value=0.47  Score=33.14  Aligned_cols=51  Identities=14%  Similarity=0.224  Sum_probs=33.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCC-----CCCchHHHHHHhCC-CCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPE-----ETPGRWERIARQVP-GKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~-----~~~~rW~~IA~~vp-gRt~~qc~~ry~~ll~   65 (232)
                      ..++|.+||++|.+-|+.+..     ....-|..+|+.-+ ..|-+.-++||...+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~   58 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLR   58 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            357899999999999976532     22455999999988 7899999999987765

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=90.93  E-value=0.25  Score=46.81  Aligned_cols=43  Identities=33%  Similarity=0.501  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHA  157 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~  157 (232)
                      ...|+.-|-.+|.++|++||+ ++..|..+|+|=++-..+-..|
T Consensus       285 mEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyY  327 (693)
T KOG3554|consen  285 MEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYY  327 (693)
T ss_pred             hhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHH
Confidence            346999999999999999999 9999999999999999988864

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=89.52  E-value=0.38  Score=45.69  Aligned_cols=46  Identities=26%  Similarity=0.444  Sum_probs=39.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCchHHHH-HHhCCCCCHHHHHHHHHHH
Q 026855           14 TSSSWTREEDKLFERALVTFPEETPGRWERI-ARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~I-A~~vpgRt~~qc~~ry~~l   63 (232)
                      .+-+|+..|-.+|++|+.+||++    +..| +.+||=||...+.++|...
T Consensus       284 emEEWSasEanLFEeALeKyGKD----FndIrqdfLPWKSl~sIveyYYmw  330 (693)
T KOG3554|consen  284 EMEEWSASEANLFEEALEKYGKD----FNDIRQDFLPWKSLTSIVEYYYMW  330 (693)
T ss_pred             hhhhccchhhHHHHHHHHHhccc----HHHHHHhhcchHHHHHHHHHHHHH
Confidence            36789999999999999999987    6555 6788999999999988654

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=89.44  E-value=1.3  Score=40.45  Aligned_cols=53  Identities=17%  Similarity=0.330  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHH----CCCCC--CchHHHHHHhCC----CCCHHHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVT----FPEET--PGRWERIARQVP----GKSSVDVQRRYDDLVLDL   67 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~----~p~~~--~~rW~~IA~~vp----gRt~~qc~~ry~~ll~~~   67 (232)
                      ...|+.+|-..|+.+...    |..++  ..-|+.||..+.    -||..||+.+|+++....
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y  116 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY  116 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            589999999999988543    22221  344999999554    499999999998886544

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=89.07  E-value=0.75  Score=48.10  Aligned_cols=47  Identities=28%  Similarity=0.574  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLR  163 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~  163 (232)
                      .||.-+=..|+.|+.+||+.+...||. .|.++|..+|+.+++.|..|
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~-~~~~k~~~ev~~y~~~f~~~  872 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIAS-EMEGKTEEEVERYAKVFWER  872 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHH-HhcCCCHHHHHHHHHHHHHh
Confidence            599999999999999999999999999 69999999999775555444

>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]

Probab=89.01  E-value=3.2  Score=38.56  Aligned_cols=52  Identities=29%  Similarity=0.320  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---------------CCHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHcc
Q 026855          114 GVPWTAEEHRLFLIGLEKYGK---------------GDWRSISRNAV-----VSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~---------------g~W~~Ia~~~v-----~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      -+-|+++=++.|.+||..|.+               |+=..||+ |+     ++||.+||.+|-|-+-+|..+
T Consensus        76 egvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIar-YIKlrtgktRTrKQVSSHIQVlarrk~r  147 (455)
T KOG3841|consen   76 EGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVLARRKLR  147 (455)
T ss_pred             ccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            457999999999999999843               46678888 66     467889999998876555443

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=87.90  E-value=1.4  Score=40.22  Aligned_cols=54  Identities=17%  Similarity=0.335  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHHHHHHh----CCC-----CHHHHHhh---hcCCCCHHHHHHHHHHHHHHHcccc
Q 026855          115 VPWTAEEHRLFLIGLEKY----GKG-----DWRSISRN---AVVSRTPTQVASHAQKYFLRMNSVR  168 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~----G~g-----~W~~Ia~~---~v~~RT~~q~~~~~~ky~~~~~~~~  168 (232)
                      ..|+.+|=..||.+..+.    ..|     -|..||+.   .---||+.||+.+|.+..++.++.+
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k  120 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEK  120 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            479999999999987653    333     49999984   2345999999999988777766653

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=84.86  E-value=2.9  Score=26.40  Aligned_cols=38  Identities=26%  Similarity=0.346  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           22 EDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        22 Ed~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      =|..+..+++.-+.-+   |..||+.+ |-|...|..|.+.+
T Consensus         4 ~D~~Il~~Lq~d~r~s---~~~la~~l-glS~~~v~~Ri~rL   41 (42)
T PF13404_consen    4 LDRKILRLLQEDGRRS---YAELAEEL-GLSESTVRRRIRRL   41 (42)
T ss_dssp             HHHHHHHHHHH-TTS----HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcc---HHHHHHHH-CcCHHHHHHHHHHh
Confidence            3667777888765443   99999999 89999999999875

...

>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like

Probab=83.76  E-value=4  Score=37.10  Aligned_cols=53  Identities=17%  Similarity=0.355  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDL   67 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~   67 (232)
                      ...||..|...|.++++..-......-..||..|+||+..|+++.-..|...|
T Consensus        21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rv   73 (344)
T PF11035_consen   21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRV   73 (344)
T ss_pred             cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHH
Confidence            46899999999999998753222233667999999999999998877765544

SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]

Probab=83.41  E-value=2.2  Score=41.78  Aligned_cols=52  Identities=27%  Similarity=0.516  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHH----------HHhCCCCCHHHHHHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERI----------ARQVPGKSSVDVQRRYDDLVLDLRKI   70 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~I----------A~~vpgRt~~qc~~ry~~ll~~~~~i   70 (232)
                      ...||-.|..-|-.||..||++    +++|          -..+--||..|++.+|..++..+...
T Consensus        88 ktaWt~~E~~~Ffdal~~~GKd----Fe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~  149 (782)
T KOG4468|consen   88 KTAWTHQEEESFFDALRQVGKD----FEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKL  149 (782)
T ss_pred             ccccchhhHHHHHHHHHHhccc----HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence            5589999999999999999987    9888          33333589999999999887766443

>smart00595 MADF subfamily of SANT domain

Probab=82.35  E-value=1.5  Score=31.57  Aligned_cols=24  Identities=33%  Similarity=0.677  Sum_probs=21.6

Q ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           41 WERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        41 W~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      |..||..| |.|+.+|+.+|+.|-.
T Consensus        30 W~~Ia~~l-~~~~~~~~~kw~~LR~   53 (89)
T smart00595       30 WEEIAEEL-GLSVEECKKRWKNLRD   53 (89)
T ss_pred             HHHHHHHH-CcCHHHHHHHHHHHHH
Confidence            99999999 5699999999998854

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=81.82  E-value=1.4  Score=41.04  Aligned_cols=48  Identities=25%  Similarity=0.398  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHh-----CCC-CCHHHHHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQ-----VPG-KSSVDVQRRYDDLVLDL   67 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~-----vpg-Rt~~qc~~ry~~ll~~~   67 (232)
                      ..||.+|..-|=+++..|.-    ||-.||..     ++. ||+++..+||..+...+
T Consensus       131 n~WskeETD~LF~lck~fDL----Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l  184 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDL----RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKL  184 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCe----eEEEEeeccchhhccccccHHHHHHHHHHHHHHH
Confidence            56999999999999999964    58888877     665 99999999998886654

>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=80.87  E-value=1.8  Score=42.30  Aligned_cols=50  Identities=16%  Similarity=0.345  Sum_probs=44.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      +.+.....||.+|-++|.+++..++-+    ...|++.+|+|+.+|++..|..-
T Consensus       404 sk~~~~~~w~~se~e~fyka~~~~gs~----~slis~l~p~R~rk~iK~K~~~e  453 (584)
T KOG2009|consen  404 SKKLETDKWDASETELFYKALSERGSD----FSLISNLFPLRDRKQIKAKFKKE  453 (584)
T ss_pred             cCccccCcccchhhHHhhhHHhhhccc----ccccccccccccHHHHHHHHhhh
Confidence            444567899999999999999999876    89999999999999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
2cjj_A	93	Crystal Structure Of The Myb Domain Of The Rad Tran		1e-10
2m2e_A	73	Solution Nmr Structure Of The Sant Domain Of Human		1e-08
2cqq_A	72	Solution Structure Of Rsgi Ruh-037, A Myb Dna-Bindi		4e-05
2cqr_A	73	Solution Structure Of Rsgi Ruh-043, A Myb Dna-Bindi		8e-05

>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus Length = 93

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
          W+ +E+K FERAL  + ++TP RW  +AR V G++  +V++ Y+ LV D++ IE+G V  
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70
Query: 78 PGY 80
          P Y
Sbjct: 71 PNY 73

>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2, Northeast Structural Genomics Consortium Target Hr8254a Length = 73

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLV 64
          WT EE KL E+AL T+P  TP RW++IA  VPG++  D  +RY +LV
Sbjct: 6  WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELV 52

>pdb|2CQQ|A Chain A, Solution Structure Of Rsgi Ruh-037, A Myb Dna-Binding Domain In Human Cdna Length = 72

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVEL 77
          WT E+     R++V FP  TPGRWE+IA ++ G+S  DV  +   L  D      G+V  
Sbjct: 11 WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL-KDSVTCSPGMVSG 68
Query: 78 P 78
          P
Sbjct: 69 P 69

>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding Domain In Human Cdna Length = 73

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLV 64
          WT+ + KL E AL  +P  +   W++IAR VP KS  D   RY  LV
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
2cjj_A	93	Radialis; plant development, DNA-binding protein,	2e-30
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	5e-23
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	5e-05
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	4e-21
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	1e-20
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	2e-06
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	2e-18
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	3e-07
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	2e-15
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-15
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-05
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	6e-12
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-06
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-10
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	2e-10
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	6e-10
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-05
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	3e-09
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	8e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-07
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	4e-06
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	2e-04
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	4e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	5e-06
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	6e-06
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	8e-06
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	3e-04
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	4e-05
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	5e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	1e-04
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	1e-04
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	3e-04

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score =  107 bits (268), Expect = 2e-30
 Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 11  SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKI 70
           +  +   W+ +E+K FERAL  + ++TP RW  +AR V G++  +V++ Y+ LV D++ I
Sbjct: 4   TRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI 63

Query: 71  EAGLVELPGYEDEMDSPGRVAESGASLGNNSNRSRD 106
           E+G V  P Y            +G ++  +  R R+
Sbjct: 64  ESGKVPFPNYRT----------TGGNMKTDEKRFRN 89

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 87.5 bits (217), Expect = 5e-23
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRK 169
                V WT EE  LF  GL K+G+  W  IS+  + SRT  QV S+A++YF        
Sbjct: 5   SSGYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGL 62

Query: 170 DKKRSS 175
           DK+  +
Sbjct: 63  DKETPN 68

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRK 69
          S+  S  WT EE +LFE+ L  F      RW +I++ +  ++ + V+        +  K
Sbjct: 5  SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFKNKVK 59

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 82.6 bits (204), Expect = 4e-21
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDL 67
          +  +   W   E+  FE AL    ++TP RW+++A+ V G++  +V++ Y+      
Sbjct: 16 TRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYELEHHHH 72

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 81.5 bits (201), Expect = 1e-20
 Identities = 22/67 (32%), Positives = 30/67 (44%)

Query: 3  HNKIDYSYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD 62
             +    + S    WT+ + KL E AL  +P  +   W++IAR VP KS  D   RY  
Sbjct: 6  SGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 65

Query: 63 LVLDLRK 69
          LV     
Sbjct: 66 LVSGPSS 72

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 98  GNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGD---WRSISRNAVVSRTPTQVA 154
            + S+ S  +E  R    PWT  + +L  + L++Y +G    W  I+R  V S++     
Sbjct: 2   SSGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCI 60

Query: 155 SH 156
           + 
Sbjct: 61  AR 62

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 76.2 bits (187), Expect = 2e-18
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 110 ERRKGVPWTAEEHRLFLIGLEKYGKGD-----WRSISRNAVVSRTPTQVASHAQKYFLRM 164
                  WT EE +     L KY   +     W+ I+   + +RT  QVAS  QKYF+++
Sbjct: 4   GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE-LGNRTAKQVASQVQKYFIKL 62

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 11 SASTSSSWTREEDKLFERALVTFPEETPG--RWERIARQVPGKSSVDVQRRY 60
           +S +  WT EE K  E+ L+ +P E     RW++IA ++  +++  V  + 
Sbjct: 4  GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQV 55

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 67.1 bits (164), Expect = 2e-15
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 108 ETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL 162
                    W A+E  L +   E  G G+W  I+     +RT  +   H  K ++
Sbjct: 3   SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 67.0 bits (164), Expect = 3e-15
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS 166
            WTA+E    L  +   G G+W+ ++ N + ++T  +   H  KYF   +S
Sbjct: 10  SWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSGPSS 59

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 9  SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
          S  +S   SWT +E+     A++       G W+ +A Q+  K+  + ++ Y
Sbjct: 2  SSGSSGDPSWTAQEEMALLEAVMDCG---FGNWQDVANQMCTKTKEECEKHY 50

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 59.2 bits (143), Expect = 6e-12
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 103 RSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL 162
                  E      WT EE      GL ++G+ +W +I+R  V S+T +Q  +    Y  
Sbjct: 5   HHHSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKK 62

Query: 163 RMN 165
           R N
Sbjct: 63  RQN 65

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 3  HNKIDYSYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
          H+             WT EE    ++ L+         W  IAR V  K+    +  Y
Sbjct: 4  HHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRN----WSAIARMVGSKTVSQCKNFY 57

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 106 DRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRN-AVVSRTPTQ 152
           D  T   K   WT EE      G++KYG+G+W +IS+N   V+RT   
Sbjct: 3   DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVM 50

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKI 70
           +S +  WT E+     R++V FP  TPGRWE+IA ++ G+S  DV  +   L   +   
Sbjct: 4  GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCS 62

Query: 71 EAGLVELP 78
            G+V  P
Sbjct: 63 -PGMVSGP 69

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 53.3 bits (128), Expect = 6e-10
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 99  NNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQ 158
           + S+ +  +      G  WT +E  L L  LE Y   DW  +S   V SRT  +   H  
Sbjct: 3   SGSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFL 60

Query: 159 KYFL 162
           +  +
Sbjct: 61  RLPI 64

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 9  SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
          S  AS    WT +E  L   AL  +       W +++  V  ++  +    +
Sbjct: 12 SKGASAGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHF 59

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 54.8 bits (130), Expect = 3e-09
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 99  NNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQ 158
                 R  E  ++    WT EE  L +  + KYG+ D+++IS   + +++  QV +   
Sbjct: 118 GGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFV 175

Query: 159 KYFLRMNSVRKDKKRSSIHDITTVDAAGSSSQSYDPSWVGPLTDQ 203
            Y  R N     ++  + H     +   +      P     + ++
Sbjct: 176 NYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEE 220

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 48.1 bits (114), Expect = 8e-08
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 103 RSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNA---VVSRTPTQVASHAQK 159
                + +RR   P++  E    +  +EK G G WR +   A      RT   +     K
Sbjct: 2   SHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDK-WK 60

Query: 160 YFLRMNSVRKDKKRSS 175
             +    +   ++R  
Sbjct: 61  TLVHTAKISPQQRRGE 76

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 107 RETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSI-SRNAVVSRTPTQ 152
            +   RK   W  EE +    G+ KYG+G+W  I       +RT   
Sbjct: 3   EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVM 49

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 92  ESGASLGNNSNRSRD---RETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSR 148
           +      N +    D      +R+    W+ +E   F     ++ K ++  I+ + +  +
Sbjct: 18  QQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERK 75

Query: 149 TPTQVASHAQKYFL 162
           T  +   +   Y+L
Sbjct: 76  TVAECVLY---YYL 86

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
           + W+ +E + F    +  P+     +  IA  +  K+  +    Y
Sbjct: 43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYY 84

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 44.0 bits (103), Expect = 4e-06
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 101 SNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSI---SRNAVVSRTPTQVASHA 157
           S   R    +RR   P+T  E  L +  +E  G G WR +   +   V  RT   +    
Sbjct: 18  SRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKW 77

Query: 158 QKYFLRMNSVRKDKKRSS 175
           +   +   S+   ++R +
Sbjct: 78  KTL-VHTASIAPQQRRGA 94

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 111 RRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRN-AVVSRTPTQ 152
           +++   WT EE      G++KYG+G+W +IS+N   V+RT   
Sbjct: 1   KKQ--KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVM 41

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 47/128 (36%)

Query: 17  SWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVE 76
            WTREED+   + LV   +     W+ IA  +P ++ V  Q R+   VL+          
Sbjct: 8   RWTREEDEKL-KKLVE--QNGTDDWKVIANYLPNRTDVQCQHRWQK-VLN---------- 53

Query: 77  LPGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGD 136
            P                                  KG PWT EE +  +  ++KYG   
Sbjct: 54  -PE-------------------------------LIKG-PWTKEEDQRVIKLVQKYGPKR 80

Query: 137 WRSISRNA 144
           W  I+++ 
Sbjct: 81  WSVIAKHL 88

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 104 SRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASH 156
           S     +R+    WT  E  +F     ++ K ++  I+   +  ++      +
Sbjct: 2   SSGSSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLY 52

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
          + WT  E ++F+   +  P+     +  IA  +  KS  D    Y
Sbjct: 13 NVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYY 53

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 116 PWTAEEHRLFLIGLEKYGKGDWRSI-SRNAVVSRTPTQ 152
            W  EE +    G+ KYG+G+W  I       +RT   
Sbjct: 4   AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVM 41

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 109 TERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSR---TPTQVASHAQKYFLRM 164
            +++  V WT E H  FL  ++  G           +++    T   VASH QK+ + +
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 100 NSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNA---VVSRTPTQVASH 156
           N    R   ++RR   P++  E    +  +E  G G WR +   A      RT   +   
Sbjct: 3   NQKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDK 62

Query: 157 AQKYFLRMNSVRKDKKRS 174
            +   +   S+   ++R 
Sbjct: 63  WKTL-VHTASIAPQQRRG 79

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQV 153
            WT +E + F+ GL +YGK ++  I +  + ++   ++
Sbjct: 11  CWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGEL 47

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
             W  +E +    A  + P+  PG W  +A  V  +S  + QR+Y
Sbjct: 8  DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.96
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.96
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.95
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.95
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.95
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.92
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.92
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.83
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.8
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.77
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.76
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.68
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.66
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.65
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.65
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.64
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.64
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.63
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.63
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.61
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	99.6
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.6
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.6
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.59
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.59
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.58
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.57
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.55
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	99.52
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.51
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.5
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.49
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.48
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.48
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.2
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.46
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.44
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.43
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.42
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.42
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.42
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.42
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.41
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.4
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.39
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.38
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.37
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.37
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.36
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.36
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.35
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.34
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.34
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.33
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.33
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.31
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.3
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	99.29
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.24
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.23
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.21
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.19
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.18
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.11
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.7
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	99.1
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	99.07
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.01
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.01
2crg_A	70	Metastasis associated protein MTA3; transcription	99.0
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	98.96
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.94
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.88
2crg_A	70	Metastasis associated protein MTA3; transcription	98.87
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.86
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	98.76
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.75
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.7
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.69
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.24
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.2
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.17
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.09
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.08
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.04
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	97.96
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.89
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.93
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.92
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.26
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.24
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.08
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.05
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.03
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.14
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.83
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	93.64
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	86.77
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	81.8
2ecc_A	76	Homeobox and leucine zipper protein homez; homeobo	80.77

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.96  E-value=6e-29  Score=189.83  Aligned_cols=104  Identities=19%  Similarity=0.415  Sum_probs=92.7

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccC
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESG   94 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~~   94 (232)
                      .+.||+|||++|.++|.+||.+   +|..||.+|||||..||++||..+++            |.               
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~------------p~---------------   50 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAK---DWIRISQLMITRNPRQCRERWNNYIN------------PA---------------   50 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTTTSCHHHHHHHHHHHSS------------SC---------------
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcCCCCHHHHHHHHHHHHc------------cc---------------
Confidence            3689999999999999999864   49999999999999999999999876            22               


Q ss_pred             CccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHccc
Q 026855           95 ASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSV  167 (232)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~~  167 (232)
                                       .+.++||+|||.+|+.++.+||. +|..||+ +|+|||+.||++||..+.++..+.
T Consensus        51 -----------------i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           51 -----------------LRTDPWSPEEDMLLDQKYAEYGP-KWNKISK-FLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             -----------------CTTCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------ccccccCHHHHHHHHHHHHHhCc-CHHHHHH-HCCCCCHHHHHHHHHHHHhhHHHh
Confidence                             33469999999999999999999 9999999 899999999999999887776543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.96  E-value=1.3e-28  Score=187.04  Aligned_cols=99  Identities=24%  Similarity=0.546  Sum_probs=89.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccC
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESG   94 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~~   94 (232)
                      .++||+|||++|.++|.+||.+   +|..||++|||||..||++||..+++            |                
T Consensus         4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p----------------   52 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------P----------------   52 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTC------------C----------------
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhcCCCHHHHHHHHHhccC------------C----------------
Confidence            6789999999999999999864   49999999999999999999999876            2                


Q ss_pred             CccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855           95 ASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL  162 (232)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~  162 (232)
                                      ..+.++||+|||.+|+.++.+||. +|..||+ +|||||+.||++||+.+++
T Consensus        53 ----------------~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~~~  102 (105)
T 1gv2_A           53 ----------------EVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTMR  102 (105)
T ss_dssp             ----------------CCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHTC
T ss_pred             ----------------cccccCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHHHHHh
Confidence                            234468999999999999999998 9999999 8999999999999987644

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.95  E-value=4.9e-28  Score=189.93  Aligned_cols=107  Identities=24%  Similarity=0.512  Sum_probs=94.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcc
Q 026855           11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRV   90 (232)
Q Consensus        11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~   90 (232)
                      .+...+.||+|||++|.++|.+||.    +|..||..|||||..||++||..+++            |            
T Consensus         7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p------------   58 (126)
T 3osg_A            7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYLA------------P------------   58 (126)
T ss_dssp             CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHTS------------T------------
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhcc------------c------------
Confidence            4456889999999999999999986    39999999999999999999999876            2            


Q ss_pred             cccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHccc
Q 026855           91 AESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSV  167 (232)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~~  167 (232)
                                          ..+.++||+|||++|++++.+||. +|..||+ +|+|||..||++||..+++++...
T Consensus        59 --------------------~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~~k~~~p  113 (126)
T 3osg_A           59 --------------------SISHTPWTAEEDALLVQKIQEYGR-QWAIIAK-FFPGRTDIHIKNRWVTISNKLGIP  113 (126)
T ss_dssp             --------------------TSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHHHHHHTTC-
T ss_pred             --------------------ccccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHhcCCC
Confidence                                233468999999999999999998 9999999 899999999999999887776543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.95  E-value=1.6e-27  Score=187.32  Aligned_cols=102  Identities=25%  Similarity=0.533  Sum_probs=90.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcc
Q 026855           11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRV   90 (232)
Q Consensus        11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~   90 (232)
                      ++...++||+|||++|.++|.+||.+   +|..||.+|||||..||++||..+++            |            
T Consensus        23 p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p------------   75 (128)
T 1h8a_C           23 PELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKGRIGKQCRERWHNHLN------------P------------   75 (128)
T ss_dssp             TTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSSSCCHHHHHHHHHHTTC------------S------------
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhcCCcHHHHHHHHHHhcc------------c------------
Confidence            34557899999999999999999864   49999999999999999999999876            2            


Q ss_pred             cccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855           91 AESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                                          ..+.++||+|||.+|++++.+||. +|..||+ +|||||+.||++||..++
T Consensus        76 --------------------~~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~r~~~~~  124 (128)
T 1h8a_C           76 --------------------EVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAVKNHWNSTM  124 (128)
T ss_dssp             --------------------SSCCSCCCHHHHHHHHHHHHHHCS-CHHHHGG-GSTTCCHHHHHHHHHTTT
T ss_pred             --------------------ccccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence                                234468999999999999999998 9999999 899999999999987653

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.95  E-value=9.5e-28  Score=189.41  Aligned_cols=101  Identities=21%  Similarity=0.383  Sum_probs=90.7

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccC
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESG   94 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~~   94 (232)
                      .+.||+|||++|.++|..||.+   +|..||.+|||||..||++||..+++            |                
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p----------------   50 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQ---NWPRITSFLPNRSPKQCRERWFNHLD------------P----------------   50 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSC---CGGGGTTSCTTSCHHHHHHHHHHHTS------------T----------------
T ss_pred             CCCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHCCCCHHHHHHHHhhccC------------c----------------
Confidence            4689999999999999999854   39999999999999999999999886            2                


Q ss_pred             CccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855           95 ASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~  164 (232)
                                      ..+.++||+|||.+|++++.+||. +|..||+ +|+|||+.||++||+.++.+.
T Consensus        51 ----------------~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~l~~~  102 (131)
T 3zqc_A           51 ----------------AVVKHAWTPEEDETIFRNYLKLGS-KWSVIAK-LIPGRTDNAIKNRWNSSISKR  102 (131)
T ss_dssp             ----------------TCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTT-TSTTCCHHHHHHHHHHTTGGG
T ss_pred             ----------------cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHH
Confidence                            233468999999999999999998 9999999 899999999999998886554

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.92  E-value=2.5e-26  Score=186.61  Aligned_cols=101  Identities=26%  Similarity=0.509  Sum_probs=55.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAE   92 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~   92 (232)
                      ...+.||+|||++|.++|.+||.+   +|..||++|||||..||++||..+++            |              
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p--------------   54 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN------------P--------------   54 (159)
T ss_dssp             ------------------------------------------CHHHHHHTTTC------------T--------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHccC------------C--------------
Confidence            346789999999999999999854   49999999999999999999998876            2              


Q ss_pred             cCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855           93 SGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                                        ..+.++||+|||.+|+.++.+||.++|..||. ++++||+.||++||..|+
T Consensus        55 ------------------~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l  104 (159)
T 1h89_C           55 ------------------ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL  104 (159)
T ss_dssp             ------------------TCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHHTT
T ss_pred             ------------------CcCCCCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHHHh
Confidence                              12346899999999999999999878999999 899999999999998875

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.92  E-value=2.2e-25  Score=181.05  Aligned_cols=101  Identities=24%  Similarity=0.533  Sum_probs=89.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 026855           12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVA   91 (232)
Q Consensus        12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~   91 (232)
                      ....++||+|||++|.+++..||.+   +|..||.+|||||..||++||..+++            |             
T Consensus        55 ~~~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p-------------  106 (159)
T 1h89_C           55 ELIKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------P-------------  106 (159)
T ss_dssp             TCCCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTSTTCCHHHHHHHHHHTTC------------T-------------
T ss_pred             CcCCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcCCCCHHHHHHHHHHHhC------------c-------------
Confidence            3457899999999999999999853   49999999999999999999998875            2             


Q ss_pred             ccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855           92 ESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                                         ..+.++||+|||.+|++++.+||. +|..||+ +|||||+.||++||+.++
T Consensus       107 -------------------~~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~gRt~~~~knr~~~~~  155 (159)
T 1h89_C          107 -------------------EVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM  155 (159)
T ss_dssp             -------------------TSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHTTT
T ss_pred             -------------------cccccCCChHHHHHHHHHHHHHCC-CHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence                               234468999999999999999999 9999999 899999999999988653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.83  E-value=1.1e-20  Score=140.36  Aligned_cols=72  Identities=38%  Similarity=0.804  Sum_probs=61.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 026855           11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYED   82 (232)
Q Consensus        11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~   82 (232)
                      ++++.+.||+|||++|++|+++||.++++||.+||++|||||..||++||..++.++..|++|.+.+|.|..
T Consensus         4 ~~~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~   75 (93)
T 2cjj_A            4 TRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRT   75 (93)
T ss_dssp             ----CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence            345578999999999999999999999999999999999999999999999999999999999999998864

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.80  E-value=6.7e-20  Score=130.10  Aligned_cols=70  Identities=36%  Similarity=0.653  Sum_probs=64.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 026855            9 SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGY   80 (232)
Q Consensus         9 ~~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~   80 (232)
                      ++++.....||.||+++|++||++||+++++||++||++| |||+.||+.||+.|++++ .+++|.+.+|.|
T Consensus         2 ~~~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~   71 (72)
T 2cqq_A            2 SSGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSS   71 (72)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCC
Confidence            4556668899999999999999999999999999999998 999999999999999985 678999999976

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.77  E-value=2.5e-19  Score=140.45  Aligned_cols=73  Identities=22%  Similarity=0.471  Sum_probs=45.8

Q ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccCCccCCCCCCCCcccccccCCCCCCHHHHH
Q 026855           44 IARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHR  123 (232)
Q Consensus        44 IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~  123 (232)
                      ||+.|||||..||++||..+++            |                                ..+.++||+|||+
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~------------p--------------------------------~~~k~~Wt~eED~   36 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLN------------P--------------------------------ELNKGPWTKEEDQ   36 (128)
T ss_dssp             ---------------------C------------T--------------------------------TCCCSCCCHHHHH
T ss_pred             CccccCCCCHHHHHHHHHHhhC------------C--------------------------------CCCCCCCCHHHHH
Confidence            8999999999999999998876            2                                2334689999999


Q ss_pred             HHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          124 LFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       124 ~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      +|++++.+||.++|..||. +|+|||..||+.||.+|+
T Consensus        37 ~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C           37 RVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHL   73 (128)
T ss_dssp             HHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhc
Confidence            9999999999878999999 899999999999998875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.76  E-value=2.2e-18  Score=122.26  Aligned_cols=65  Identities=38%  Similarity=0.579  Sum_probs=59.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHccccCCCCCCCCCc
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRSSIHD  178 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~~~k~~kr~s~~~  178 (232)
                      .+.++||+|||++|++++.+||. +|..||+ +|+|||..||++||++|++++.+....+.+.+||+
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s   71 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT   71 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence            45579999999999999999999 9999999 89999999999999999999887777777888875

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=3.3e-17  Score=115.53  Aligned_cols=53  Identities=23%  Similarity=0.488  Sum_probs=47.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      .++...+.||+|||++|.++|.+||.+   +|..||.+|+|||..||++||..+|+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~L~   56 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWYEWLD   56 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence            344557899999999999999999854   49999999999999999999999876

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.66  E-value=6.9e-17  Score=114.81  Aligned_cols=55  Identities=40%  Similarity=0.670  Sum_probs=51.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDL   67 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~   67 (232)
                      .....||.+||++|+.||++||.+++++|.+||.+|||||..||+.||..|+.|+
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~   70 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGP   70 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSC
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcc
Confidence            4577899999999999999999888999999999999999999999999998753

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.65  E-value=2.1e-16  Score=111.95  Aligned_cols=53  Identities=26%  Similarity=0.530  Sum_probs=49.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      +....||++|+++|++||+.||.++|+||++||++|||||++||++||..++.
T Consensus         6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            44678999999999999999999999999999999999999999999999865

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.65  E-value=2.6e-16  Score=104.53  Aligned_cols=48  Identities=29%  Similarity=0.418  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL  162 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~  162 (232)
                      .++||+|||.+|++++.+||.++|..||+ +|++||+.||++||++|+.
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999999999999 8999999999999998863

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.64  E-value=2.2e-16  Score=108.06  Aligned_cols=49  Identities=27%  Similarity=0.571  Sum_probs=45.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855          113 KGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL  162 (232)
Q Consensus       113 ~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~  162 (232)
                      ...+||+|||++|+++|.+||.++|..||+ +|++||+.||++||++|+.
T Consensus         7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            7 GDPSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHHHHcc
Confidence            446899999999999999999769999999 8999999999999998864

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.64  E-value=2.2e-16  Score=107.41  Aligned_cols=48  Identities=29%  Similarity=0.526  Sum_probs=44.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC-CCCHHHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV-SRTPTQVASHAQKYFL  162 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~-~RT~~q~~~~~~ky~~  162 (232)
                      ..+||+|||++|+++|.+||.++|..||+ +|+ +||+.||+.||++||.
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHHHHcc
Confidence            35899999999999999999779999999 899 9999999999999873

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.63  E-value=4.2e-16  Score=103.57  Aligned_cols=47  Identities=26%  Similarity=0.483  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      .++||+|||++|++++.+||.++|..||. +|+|||+.||++||++|+
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence            46899999999999999999878999999 899999999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2.8e-16  Score=112.10  Aligned_cols=52  Identities=37%  Similarity=0.591  Sum_probs=47.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-----CCHHHHHhhhcCCCCHHHHHHHHHHHHHHHc
Q 026855          113 KGVPWTAEEHRLFLIGLEKYGK-----GDWRSISRNAVVSRTPTQVASHAQKYFLRMN  165 (232)
Q Consensus       113 ~~~~WT~eEd~~l~~~l~~~G~-----g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~  165 (232)
                      ..++||+|||++|+++|.+||.     ++|..||+ +|+|||..||++||++|+.++.
T Consensus         7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHH
Confidence            4468999999999999999995     59999999 8999999999999999987754

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.61  E-value=8.1e-17  Score=113.15  Aligned_cols=49  Identities=31%  Similarity=0.653  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855           14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD   62 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~   62 (232)
                      ++..||.+|+++|++||++||+++|+||++||+.|||||+.||+.+|..
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~   67 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL   67 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999963

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=99.60  E-value=4.1e-16  Score=145.15  Aligned_cols=51  Identities=31%  Similarity=0.543  Sum_probs=47.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      ..+||+||+.+|++||.+||+ +|..||+ +|+|||..||++||++|.++++.
T Consensus       380 ~~~WT~eE~~~f~~al~~yGk-dw~~IA~-~VgTKT~~Qvk~fy~~~kkr~~l  430 (482)
T 2xag_B          380 NARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFNI  430 (482)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTT-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTTH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HhCCCCHHHHHHHHHHHHHHhCh
Confidence            568999999999999999999 9999999 89999999999999998776554

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=1.1e-15  Score=104.48  Aligned_cols=50  Identities=22%  Similarity=0.389  Sum_probs=45.2

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL  162 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~  162 (232)
                      .+.++||+|||++|++++.+||.++|..||+ +|++||+.||++||++|+.
T Consensus         6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHcC
Confidence            4456899999999999999999669999999 8999999999999988753

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.60  E-value=1.7e-15  Score=101.01  Aligned_cols=48  Identities=25%  Similarity=0.428  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV--SRTPTQVASHAQKYFL  162 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~--~RT~~q~~~~~~ky~~  162 (232)
                      .++||+|||++|+++|.+||.++|..||. +++  +||+.||++||.+|++
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHHc
Confidence            35899999999999999999779999999 799  9999999999998753

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.59  E-value=2.8e-15  Score=103.97  Aligned_cols=50  Identities=30%  Similarity=0.548  Sum_probs=44.0

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHH
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV--SRTPTQVASHAQKYFL  162 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~--~RT~~q~~~~~~ky~~  162 (232)
                      .+..+||+|||++|+++|.+||.++|..||+ +++  +||+.||+.||..|.+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHhc
Confidence            3456899999999999999999889999999 665  9999999999988743

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.59  E-value=8.5e-15  Score=124.63  Aligned_cols=135  Identities=16%  Similarity=0.238  Sum_probs=91.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCC--CCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 026855           14 TSSSWTREEDKLFERALVTFPEE--TPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSPGRVA   91 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~--~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~~~~~   91 (232)
                      ..+.||+|||++|.+++.+||..  +...|..||.+|||||..||+.||..+|..-  ++-.      |..+.+...+..
T Consensus         7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~--ln~v------y~~ded~~Li~d   78 (246)
T 1ign_A            7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR--LEYV------YEVDKFGKLVRD   78 (246)
T ss_dssp             -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG--CCCE------ECBCTTSCBCBC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh--cccc------cccCcchhhhhc
Confidence            46799999999999999999863  2344999999999999999999999988631  1100      111111000000


Q ss_pred             ccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHH-h--------------------------------C-----
Q 026855           92 ESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEK-Y--------------------------------G-----  133 (232)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~-~--------------------------------G-----  133 (232)
                      .. +......    ... ... ...||.|||-.|...+.+ |                                |     
T Consensus        79 ~~-Gn~ikis----~lp-~si-K~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (246)
T 1ign_A           79 DD-GNLIKTK----VLP-PSI-KRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVP  151 (246)
T ss_dssp             TT-SCBCEES----SCC-CCS-CCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC----------------------
T ss_pred             cC-CCceeee----ccC-ccc-cCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccc
Confidence            00 1111000    001 111 247999999999999987 2                                1     


Q ss_pred             -------------------CCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855          134 -------------------KGDWRSISRNAVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       134 -------------------~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~  164 (232)
                                         .+.|+.||+ ++|+||....|+||.|++...
T Consensus       152 ~~~~~f~~~~~~~~~gp~~~~~fk~ia~-~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          152 GSEPNFAAYRTQSRRGPIAREFFKHFAE-EHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             ---------CCCCCCCCCCTTHHHHHHH-HTTTSCHHHHHHHHHHTHHHH
T ss_pred             cCCcchhhhccccccCcchHHHHHHHHH-HCCCCChhhHHHHHHHHHhhc
Confidence                               136999999 899999999999999987665

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.58  E-value=4e-15  Score=104.50  Aligned_cols=53  Identities=26%  Similarity=0.422  Sum_probs=47.6

Q ss_pred             cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHHH
Q 026855          110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV--SRTPTQVASHAQKYFLR  163 (232)
Q Consensus       110 ~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~--~RT~~q~~~~~~ky~~~  163 (232)
                      ++++.++||+|||++|+++|.+||.++|..||. +++  +||+.||++||..|+..
T Consensus         6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p   60 (69)
T 1ity_A            6 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKL   60 (69)
T ss_dssp             CSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCC
Confidence            345567999999999999999999879999999 899  99999999999988654

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.57  E-value=2.3e-15  Score=108.58  Aligned_cols=46  Identities=37%  Similarity=0.588  Sum_probs=42.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 026855          113 KGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKY  160 (232)
Q Consensus       113 ~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky  160 (232)
                      ...+||+|||.+|+++|++|| ++|..||+ +|+|||+.||+.||++|
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~-~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYK-DDWNKVSE-HVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSS-SCHHHHHH-HHSSCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhC-CCHHHHHH-HcCCCCHHHHHHHHHHh
Confidence            346899999999999999999 59999999 89999999999999866

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=5.7e-15  Score=103.94  Aligned_cols=49  Identities=22%  Similarity=0.502  Sum_probs=45.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      .+.++||+|||++|+++|.+||.++|..||. +|++||..||+.||++|+
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L   55 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWL   55 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHc
Confidence            4557999999999999999999769999999 899999999999998874

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=99.52  E-value=2.4e-14  Score=126.64  Aligned_cols=130  Identities=19%  Similarity=0.286  Sum_probs=96.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHH----------HHHhhcCCCCC-------
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDL----------RKIEAGLVELP-------   78 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~----------~~ie~g~~~~p-------   78 (232)
                      +.||..|...|++|+.+||.+.   |+.||+.|+|||..||+.+|+.+....          ..|+.|...+.       
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~---~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~  187 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDD---IDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK  187 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTC---HHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHH---HHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999864   999999999999999998887775543          45555544332       


Q ss_pred             -------CCCCCCCCCCcccccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHhh-----
Q 026855           79 -------GYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGK---GDWRSISRN-----  143 (232)
Q Consensus        79 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~---g~W~~Ia~~-----  143 (232)
                             .|.++...+.+                .++.  .++..||+|||+.||.+|.+||.   |.|..|...     
T Consensus       188 ~l~~Ki~~~~~P~~~L~i----------------~y~~--~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p  249 (304)
T 1ofc_X          188 ALDQKMSRYRAPFHQLRL----------------QYGN--NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASP  249 (304)
T ss_dssp             HHHHHHHTCSSHHHHCCC----------------CCTT--CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCG
T ss_pred             HHHHHHHHhcCcHHHhcc----------------ccCC--CCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCc
Confidence                   11111111111                0011  24458999999999999999999   999999732     


Q ss_pred             ------hcCCCCHHHHHHHHHHHHHHHcc
Q 026855          144 ------AVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       144 ------~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                            ||.+||+.++..|++-++.-+.+
T Consensus       250 ~FrFDwf~kSRTp~el~rRc~tLi~~iek  278 (304)
T 1ofc_X          250 QFRFDWFIKSRTALELQRRCNTLITLIER  278 (304)
T ss_dssp             GGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence                  89999999999999876544433

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.5e-14  Score=101.92  Aligned_cols=57  Identities=26%  Similarity=0.563  Sum_probs=49.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCC--CchHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEET--PGRWERIARQVPGKSSVDVQRRYDDLVLD   66 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~--~~rW~~IA~~vpgRt~~qc~~ry~~ll~~   66 (232)
                      .++.....||+|||++|+++|.+||.++  +.+|.+||++|||||..||++||..++..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            3445678999999999999999999754  36899999999999999999999888764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.50  E-value=4.1e-14  Score=96.71  Aligned_cols=53  Identities=21%  Similarity=0.374  Sum_probs=47.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      +.......||+|||++|.+++.+||.+   +|..||++|||||..||++||..++.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            344567899999999999999999854   39999999999999999999998875

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.49  E-value=3.3e-14  Score=100.94  Aligned_cols=49  Identities=24%  Similarity=0.572  Sum_probs=43.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      ....+||.|||++|+.+|.+||++   +|..||+ +|||||..||++||+.+.
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~L~   67 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKLLV   67 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence            345689999999999999999943   8999999 899999999999998764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.48  E-value=8.3e-14  Score=95.02  Aligned_cols=53  Identities=23%  Similarity=0.473  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      ++....+.||+|||++|.+++.+||.+   +|..||.+|||||..||++||..+++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHccCCCHHHHHHHHHHHcC
Confidence            445568899999999999999999853   39999999999999999999999876

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=5.7e-14  Score=97.69  Aligned_cols=53  Identities=23%  Similarity=0.374  Sum_probs=46.7

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHccc
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSV  167 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~~  167 (232)
                      .+.++||+|||++|+++++.||. +|..||+  ++|||+.||++||+.|+....+.
T Consensus         7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~--~~gRt~~qcr~Rw~~~l~~~~~~   59 (66)
T 2din_A            7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP--IIGRTAAQCLEHYEFLLDKAAQR   59 (66)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH--HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc--ccCcCHHHHHHHHHHHhChHhcC
Confidence            44568999999999999999999 9999998  45799999999999998876543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.20  E-value=4.1e-15  Score=109.63  Aligned_cols=53  Identities=32%  Similarity=0.365  Sum_probs=48.5

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      ...++||+|||.+|++++.+||. +|..||. +|+|||..||++||+.|+++++.
T Consensus        14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~l   66 (89)
T 2ltp_A           14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQNL   66 (89)
Confidence            45579999999999999999999 9999999 89999999999999999877654

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.46  E-value=8.9e-14  Score=92.14  Aligned_cols=48  Identities=27%  Similarity=0.607  Sum_probs=44.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      .+.||+|||++|.+++.+||.+   +|..||.+|||||..||++||..+++
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            5789999999999999999864   39999999999999999999999876

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.44  E-value=1.2e-13  Score=91.56  Aligned_cols=48  Identities=23%  Similarity=0.576  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      .+.||+|||++|.+++.+||.+   +|..||.+|+|||..||++||..+|+
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            5789999999999999999864   49999999999999999999998875

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.43  E-value=3.8e-13  Score=97.73  Aligned_cols=50  Identities=18%  Similarity=0.373  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhh---hcCCCCHHHHHHHHHHHHHHHc
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRN---AVVSRTPTQVASHAQKYFLRMN  165 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~---~v~~RT~~q~~~~~~ky~~~~~  165 (232)
                      +||+|||++|+++|++||.|+|..|++.   ++++||..||+++|.+++++..
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            7999999999999999999999999984   2899999999999999876544

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.42  E-value=3.5e-13  Score=93.32  Aligned_cols=50  Identities=20%  Similarity=0.532  Sum_probs=45.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVP--GKSSVDVQRRYDDLVL   65 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp--gRt~~qc~~ry~~ll~   65 (232)
                      .....||+|||++|+++|.+||.+.   |..||+++|  |||..||++||..++.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGN---WAAISKNYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCc---hHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence            4578999999999999999998653   999999977  9999999999999876

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.42  E-value=4.6e-13  Score=90.89  Aligned_cols=47  Identities=21%  Similarity=0.370  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC-CCCHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVP-GKSSVDVQRRYDDLV   64 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp-gRt~~qc~~ry~~ll   64 (232)
                      ...||+|||.+|.++|.+||.+   +|..||.+|| |||..||++||..+.
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~---~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLG---NWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTT---CHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            5689999999999999999854   3999999999 999999999998763

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.42  E-value=2.2e-13  Score=96.59  Aligned_cols=46  Identities=26%  Similarity=0.330  Sum_probs=41.7

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHH
Q 026855          111 RRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQK  159 (232)
Q Consensus       111 ~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~k  159 (232)
                      ..+.++||+|||++|++++.+||. +|..||+ ++ |||+.||++||..
T Consensus        20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~~   65 (73)
T 2llk_A           20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCRL   65 (73)
T ss_dssp             CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHHH
Confidence            345679999999999999999999 8999999 78 9999999999863

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=3.7e-13  Score=93.53  Aligned_cols=58  Identities=22%  Similarity=0.511  Sum_probs=50.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 026855           11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAG   73 (232)
Q Consensus        11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g   73 (232)
                      +....+.||+|||++|.+++..||.    +|.+||. ++|||..||++||..+++....+++|
T Consensus         5 P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            5 SSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             SSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            4445789999999999999999986    4999999 88999999999999999987666554

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=5.3e-13  Score=91.48  Aligned_cols=47  Identities=15%  Similarity=0.164  Sum_probs=42.2

Q ss_pred             cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHH
Q 026855          110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQ  158 (232)
Q Consensus       110 ~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~  158 (232)
                      +++...+||+||+++|++++.+||+ +|..||. +|++||..||..||-
T Consensus         8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~-~l~~rt~~~~v~~Yy   54 (61)
T 2eqr_A            8 DRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLYYY   54 (61)
T ss_dssp             CCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH-HCTTSCHHHHHHHHH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHH
Confidence            3445579999999999999999998 9999998 999999999999763

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.40  E-value=6.2e-13  Score=88.49  Aligned_cols=48  Identities=23%  Similarity=0.477  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVP--GKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp--gRt~~qc~~ry~~ll~   65 (232)
                      .++||+|||++|.++|.+||.+   +|..||.+||  |||..||++||..++.
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5789999999999999999854   3999999999  9999999999998864

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.39  E-value=8.4e-13  Score=93.34  Aligned_cols=53  Identities=28%  Similarity=0.541  Sum_probs=48.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLD   66 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~   66 (232)
                      ++....++||+|||++|.+++.+||.    +|..||.+|||||..||+.||..++..
T Consensus         4 ~p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            4 GSSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             CCSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            44556889999999999999999987    399999999999999999999998774

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.38  E-value=1.2e-13  Score=99.52  Aligned_cols=49  Identities=20%  Similarity=0.474  Sum_probs=44.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH-HH
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL-VL   65 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l-l~   65 (232)
                      .....||+|||.+|.+||.+||.    +|.+||++|++||..||+.||..+ +.
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~~RT~~qcr~r~~~~~i~   65 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHVGSRTQDECILHFLRLPIE   65 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHSSCCHHHHHHHHTTSCCC
T ss_pred             ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence            34679999999999999999992    499999999999999999999887 44

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.37  E-value=6e-13  Score=100.36  Aligned_cols=47  Identities=26%  Similarity=0.470  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      .++||+|||++|+.+|.+||.++|..||. +|++||+.||+.||.+|+
T Consensus         4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   50 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHhcc
Confidence            46899999999999999999878999999 899999999999998874

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.37  E-value=9.6e-13  Score=97.54  Aligned_cols=51  Identities=33%  Similarity=0.626  Sum_probs=45.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855          115 VPWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      ++||.|||++|+.+|.+||.+   +|..||+ +|||||..||++||+.++.....
T Consensus         9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~~dv~~   62 (93)
T 2cjj_A            9 RPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDIKY   62 (93)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence            489999999999999999843   7999999 89999999999999998776543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.36  E-value=1.6e-12  Score=98.31  Aligned_cols=55  Identities=24%  Similarity=0.392  Sum_probs=47.6

Q ss_pred             cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHH
Q 026855          110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNA---VVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       110 ~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~---v~~RT~~q~~~~~~ky~~~~  164 (232)
                      .+++..+||+|||++|+++|++||.|+|..|++.+   +++||..+|+++|..+++.-
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34556799999999999999999999999999843   38999999999999886543

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.36  E-value=7.6e-13  Score=102.36  Aligned_cols=86  Identities=14%  Similarity=0.275  Sum_probs=70.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 026855           12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQV----PGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSP   87 (232)
Q Consensus        12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~v----pgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~   87 (232)
                      .....+||.|||++|+++|.+||.+   +|..||..+    +|||..||++||..++....        +          
T Consensus        14 rr~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~--------~----------   72 (121)
T 2juh_A           14 RRIRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS--------I----------   72 (121)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH--------T----------
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc--------c----------
Confidence            3457899999999999999999875   499999994    89999999999999987321        0          


Q ss_pred             CcccccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 026855           88 GRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRS  139 (232)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~  139 (232)
                                          .+..+++.+|++||+..++.+...+|. +|.+
T Consensus        73 --------------------~p~~krg~~~p~e~~~rv~~~h~~~gn-~~~~  103 (121)
T 2juh_A           73 --------------------APQQRRGEPVPQDLLDRVLAAHAYWSQ-QQGK  103 (121)
T ss_dssp             --------------------CSTTCCCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred             --------------------CCcccCCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence                                011123448999999999999999998 7865

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.35  E-value=2.1e-12  Score=90.46  Aligned_cols=52  Identities=23%  Similarity=0.454  Sum_probs=47.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 026855           11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVP--GKSSVDVQRRYDDLVL   65 (232)
Q Consensus        11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp--gRt~~qc~~ry~~ll~   65 (232)
                      +....+.||+|||++|.++|.+||.+   +|..||.+|+  |||..||++||..++.
T Consensus         6 ~~~~r~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            6 RARKRQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             CSSSCCCCCHHHHHHHHHHHHHHCSS---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCC---cHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence            44567899999999999999999854   3999999999  9999999999999988

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.34  E-value=3.2e-12  Score=99.01  Aligned_cols=81  Identities=15%  Similarity=0.221  Sum_probs=66.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 026855           12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQV----PGKSSVDVQRRYDDLVLDLRKIEAGLVELPGYEDEMDSP   87 (232)
Q Consensus        12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~v----pgRt~~qc~~ry~~ll~~~~~ie~g~~~~p~~~~~~~~~   87 (232)
                      .....+||.|||+.|+++|.+||.+   +|..|+..+    +|||..||++||..++....           +       
T Consensus        28 rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~-----------~-------   86 (122)
T 2roh_A           28 RRIRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS-----------I-------   86 (122)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH-----------S-------
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc-----------C-------
Confidence            3567899999999999999999976   399999974    89999999999999986311           0       


Q ss_pred             CcccccCCccCCCCCCCCcccccccCCCCCCHHH-HHHHHHHHHHhCC
Q 026855           88 GRVAESGASLGNNSNRSRDRETERRKGVPWTAEE-HRLFLIGLEKYGK  134 (232)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE-d~~l~~~l~~~G~  134 (232)
                                           .+..+.+.|+++| +..++++...||.
T Consensus        87 ---------------------~p~~kr~~~~p~e~~~~v~~~h~~~g~  113 (122)
T 2roh_A           87 ---------------------APQQRRGAPVPQELLDRVLAAQAYWSV  113 (122)
T ss_dssp             ---------------------CTTTCCCSSCCHHHHHHHHHHHHHHHS
T ss_pred             ---------------------CccccCCCCCCHHHHHHHHHHHHHHhh
Confidence                                 0112346899999 7889999999997

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.34  E-value=1.3e-12  Score=99.08  Aligned_cols=46  Identities=30%  Similarity=0.529  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      ++||+|||.+|+.+|.+||.++|..||. +|++||+.||+.||.+|+
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   47 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYI   47 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHH
Confidence            4799999999999999999889999999 899999999999998874

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.33  E-value=2.6e-12  Score=99.41  Aligned_cols=56  Identities=21%  Similarity=0.385  Sum_probs=48.8

Q ss_pred             cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHHc
Q 026855          110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNA---VVSRTPTQVASHAQKYFLRMN  165 (232)
Q Consensus       110 ~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~---v~~RT~~q~~~~~~ky~~~~~  165 (232)
                      .+++..+||+|||++|+++|++||.|+|..|++.+   +++||..||+++|..++....
T Consensus        13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~   71 (121)
T 2juh_A           13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   71 (121)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence            34556799999999999999999999999999943   499999999999999877543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.33  E-value=6.4e-12  Score=97.29  Aligned_cols=56  Identities=27%  Similarity=0.438  Sum_probs=48.5

Q ss_pred             cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHHc
Q 026855          110 ERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNA---VVSRTPTQVASHAQKYFLRMN  165 (232)
Q Consensus       110 ~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~---v~~RT~~q~~~~~~ky~~~~~  165 (232)
                      .+++..+||+|||+.|+++|++||.|+|..|++.+   +++||..||+++|.++++.-.
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34456799999999999999999999999999942   499999999999999876543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.31  E-value=2.8e-12  Score=99.96  Aligned_cols=49  Identities=22%  Similarity=0.428  Sum_probs=44.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL  162 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~  162 (232)
                      .+.++||+|||++|+.++.+||. +|..||. +|++||+.||+.||.+|+.
T Consensus         9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~   57 (126)
T 3osg_A            9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYLA   57 (126)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH-TCTTCCHHHHHHHHHHHTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHhhhcc
Confidence            34568999999999999999999 9999999 8999999999999998863

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.30  E-value=1.9e-12  Score=101.48  Aligned_cols=47  Identities=21%  Similarity=0.316  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL  162 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~  162 (232)
                      ++||+|||++|+.+|.+||.++|..||. +|+|||+.||+.||++|+.
T Consensus         3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~   49 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHLD   49 (131)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHhhccC
Confidence            5899999999999999999879999999 8999999999999998863

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=99.29  E-value=1.6e-12  Score=109.76  Aligned_cols=52  Identities=31%  Similarity=0.514  Sum_probs=47.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855          113 KGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       113 ~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      ...+||+||+++|++||.+||+ +|..||+ +|+|||..||++||.+|++|++.
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~kKRlnL  183 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFNI  183 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTTH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHhhH
Confidence            3458999999999999999999 9999999 89999999999999999777543

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=2.5e-11  Score=83.10  Aligned_cols=47  Identities=23%  Similarity=0.359  Sum_probs=42.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      ....+||++|+++|++++.+||.+    |.+||.+||+||+.||+++|...
T Consensus        10 ~~~~~WT~eE~~~F~~~~~~~gk~----w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A           10 QFMNVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             SCCCSCCHHHHHHHHHHHHHSTTC----HHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHHHh
Confidence            346799999999999999999864    99999999999999999999754

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.23  E-value=8.8e-12  Score=88.12  Aligned_cols=45  Identities=22%  Similarity=0.407  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCHHHHHhhhcCCCCHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGK---GDWRSISRNAVVSRTPTQVASHAQKY  160 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~---g~W~~Ia~~~v~~RT~~q~~~~~~ky  160 (232)
                      ..||.||+++|+.||..|++   ++|..||. +|+|||..||+.||+.+
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l   56 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence            47999999999999999997   48999999 89999999999988755

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.21  E-value=1.5e-11  Score=87.11  Aligned_cols=52  Identities=17%  Similarity=0.277  Sum_probs=45.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855            9 SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus         9 ~~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      -.+....++||+|||++|.+++++||..    |..||.+| |||..||++||..+..
T Consensus        17 ldP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           17 QGDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             --CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            3455668899999999999999999864    99999999 9999999999987643

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.19  E-value=2.6e-11  Score=82.73  Aligned_cols=46  Identities=22%  Similarity=0.376  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhh--hcCCCCHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRN--AVVSRTPTQVASHAQKY  160 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~--~v~~RT~~q~~~~~~ky  160 (232)
                      +.+||+||++.|+++|++||+ +|..|+..  |+++||...++++|..+
T Consensus         8 r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L   55 (62)
T 1x58_A            8 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL   55 (62)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHH
Confidence            458999999999999999999 99999942  89999999999987754

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.18  E-value=3.7e-11  Score=84.91  Aligned_cols=45  Identities=24%  Similarity=0.526  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQKY  160 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~ky  160 (232)
                      ...||.||+++|+.+|.+||.|   +|.+||. ++ |||..||++||+.+
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L   55 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL   55 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHH
Confidence            3579999999999999999854   7999999 77 89999999999876

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.11  E-value=2.9e-10  Score=82.44  Aligned_cols=48  Identities=17%  Similarity=0.360  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHh----CCCCCHHHHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQ----VPGKSSVDVQRRYDDLVLD   66 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~----vpgRt~~qc~~ry~~ll~~   66 (232)
                      .+||+|||++|++++.+||.|   +|..|+..    |+|||..||++||..++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~   52 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   52 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence            479999999999999999976   39999996    8999999999999999863

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.70  E-value=7.8e-12  Score=91.95  Aligned_cols=54  Identities=22%  Similarity=0.300  Sum_probs=47.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 026855            9 SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLD   66 (232)
Q Consensus         9 ~~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~   66 (232)
                      ...+...+.||+|||.+|.+++..||..    |..||.+|||||..||+.||..++..
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~----W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGRN----WSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            3444567899999999999999999863    99999999999999999999988763

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=99.10  E-value=3.6e-10  Score=102.12  Aligned_cols=132  Identities=20%  Similarity=0.303  Sum_probs=92.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC-CCCHHHHHHHHHHHHH----------HHHHHhhcCCC--------
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQVP-GKSSVDVQRRYDDLVL----------DLRKIEAGLVE--------   76 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp-gRt~~qc~~ry~~ll~----------~~~~ie~g~~~--------   76 (232)
                      +.||..|-..|++|+.+||.+.   .+.||..|. |||..+|..+++.+..          -+..|+.|...        
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d---~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~  200 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNS---IQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQ  200 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTC---HHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhH---HHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999865   999999998 9999999977765532          11223222111        


Q ss_pred             ------CCCCCCCCCCCCcccccCCccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHhh----
Q 026855           77 ------LPGYEDEMDSPGRVAESGASLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGK---GDWRSISRN----  143 (232)
Q Consensus        77 ------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~---g~W~~Ia~~----  143 (232)
                            +..|.++...+.+                .++....++..||+|||+.||.+|.+||-   |.|..|-..    
T Consensus       201 ~~L~~Ki~~y~~P~~~L~i----------------~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~  264 (374)
T 2y9y_A          201 EALRRKLSEYKNPFFDLKL----------------KHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDC  264 (374)
T ss_dssp             HHHHHHHTTCSSHHHHCCC----------------SSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHccCCHHHcee----------------ccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhC
Confidence                  1122211111111                01111113457999999999999999999   899999654    


Q ss_pred             -------hcCCCCHHHHHHHHHHHHHHHcc
Q 026855          144 -------AVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       144 -------~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                             |+.+||+.++..|+.-++.-+.+
T Consensus       265 p~FrFDwF~kSRT~~EL~rRc~tLi~~IeK  294 (374)
T 2y9y_A          265 PLFELDFYFRSRTPVELARRGNTLLQCLEK  294 (374)
T ss_dssp             SGGGSCHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred             cchhhhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence                   69999999999999866655444

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=4.1e-10  Score=77.54  Aligned_cols=44  Identities=23%  Similarity=0.483  Sum_probs=40.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHH
Q 026855          113 KGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHA  157 (232)
Q Consensus       113 ~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~  157 (232)
                      ....||+||.++|+++|.+||+ +|..|++++|++||..||..+|
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY   51 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFY   51 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHH
Confidence            3458999999999999999999 9999998579999999999965

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.01  E-value=3.6e-11  Score=84.44  Aligned_cols=43  Identities=33%  Similarity=0.603  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQ  158 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~  158 (232)
                      ..||.||+++|+.||.+|+++   +|.+||+ +|||||..+|+.||+
T Consensus        21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE   66 (74)
T ss_dssp             -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence            479999999999999999987   8999999 899999999999886

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.01  E-value=1.6e-10  Score=98.45  Aligned_cols=51  Identities=20%  Similarity=0.247  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCC-----HHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855          113 KGVPWTAEEHRLFLIGLEKYGKGD-----WRSISRNAVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       113 ~~~~WT~eEd~~l~~~l~~~G~g~-----W~~Ia~~~v~~RT~~q~~~~~~ky~~~~  164 (232)
                      +..+||+|||++|++++++||..+     |..||+ +++|||+.||++||..|+.+.
T Consensus         7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~~~L~~~   62 (246)
T 1ign_A            7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKR   62 (246)
T ss_dssp             -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGG
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHHHHHhhh
Confidence            345899999999999999999843     999999 899999999999999997654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=99.00  E-value=8.4e-10  Score=77.50  Aligned_cols=44  Identities=32%  Similarity=0.451  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQ  158 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~  158 (232)
                      ...||+||.++|++||.+||+ +|..|++++|++||..||..+|-
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence            358999999999999999999 99999985699999999999763

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=98.96  E-value=2.3e-08  Score=83.79  Aligned_cols=148  Identities=18%  Similarity=0.242  Sum_probs=84.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH-HhhcCC---CCCCCCCCCCC-
Q 026855           14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQ--VPGKSSVDVQRRYDDLVLDLRK-IEAGLV---ELPGYEDEMDS-   86 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~--vpgRt~~qc~~ry~~ll~~~~~-ie~g~~---~~p~~~~~~~~-   86 (232)
                      ....||+.|...|.+++.+||. ..+||+.|+..  |.+||..++..++..+...-.. +.....   ....-.....+ 
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~-~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~   84 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGG-PLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP   84 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSS-GGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred             cCCCCCHHHHHHHHHHHHHHCC-chhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence            4567999999999999999984 24579999975  7799999999988877553221 111000   00000000000 


Q ss_pred             ------CCcccc----------------cCC--ccCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 026855           87 ------PGRVAE----------------SGA--SLGNNSNRSRDRETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISR  142 (232)
Q Consensus        87 ------~~~~~~----------------~~~--~~~~~~~~~~~~~~~~~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~  142 (232)
                            ..+.+.                ...  ......-....  ........||++||..||.|+.+||.|+|..|..
T Consensus        85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~--~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A           85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHT--KAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCC--CCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCC--CCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence                  000000                000  00000000000  0111234699999999999999999999999976


Q ss_pred             h-------------hcCCCCHHHHHHHHHHHHHHH
Q 026855          143 N-------------AVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       143 ~-------------~v~~RT~~q~~~~~~ky~~~~  164 (232)
                      .             +...++...+..|+...+.-+
T Consensus       163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l  197 (211)
T 4b4c_A          163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL  197 (211)
T ss_dssp             CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred             ChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence            3             234455678889887444444

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=2.3e-09  Score=73.72  Aligned_cols=50  Identities=24%  Similarity=0.387  Sum_probs=44.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHH-hCCCCCHHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIAR-QVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~-~vpgRt~~qc~~ry~~l   63 (232)
                      .++.....||+||.++|+++|.+||.+    |..||. +||+||+.||.++|..-
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHhcc
Confidence            344557899999999999999999987    999998 59999999999999754

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.88  E-value=4.4e-09  Score=71.68  Aligned_cols=52  Identities=23%  Similarity=0.426  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHH---HhCCCCCHHHHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIA---RQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA---~~vpgRt~~qc~~ry~~ll~   65 (232)
                      +..+...+||+||++.|.++|.+||..    |..|+   .++++||..++.++|..|..
T Consensus         3 ~~~~~r~~WT~EE~~~L~~gV~k~G~~----W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            3 SGSSGRKDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCCCSSSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhHh----HHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            344568899999999999999999874    99999   47789999999999999865

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.87  E-value=5.6e-09  Score=73.29  Aligned_cols=50  Identities=26%  Similarity=0.397  Sum_probs=44.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHH-hCCCCCHHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIAR-QVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~-~vpgRt~~qc~~ry~~l   63 (232)
                      +.+.....||++|.++|+++|.+||.+    |..||. +||+||+.||.++|..-
T Consensus         3 ~~r~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w   53 (70)
T 2crg_A            3 SGSSGMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMW   53 (70)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CcccCCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHHhh
Confidence            344567899999999999999999987    999999 69999999999999754

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.86  E-value=1.1e-08  Score=77.22  Aligned_cols=51  Identities=16%  Similarity=0.310  Sum_probs=46.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhC----CCCCHHHHHHHHHHHHH
Q 026855           12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQV----PGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~v----pgRt~~qc~~ry~~ll~   65 (232)
                      .....+||.|||++|+++|.+||.+   +|..|+..+    +|||..||+++|..++.
T Consensus        10 rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk   64 (105)
T 2aje_A           10 RRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH   64 (105)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            4568899999999999999999976   399999976    89999999999999986

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=98.76  E-value=3e-08  Score=68.13  Aligned_cols=54  Identities=31%  Similarity=0.399  Sum_probs=45.8

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCC--CHHHHHhhh--cCCCCHHHHHHHHHHHHHHHcc
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKG--DWRSISRNA--VVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g--~W~~Ia~~~--v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      +.+..||+|.|+.|++||.++|..  -++.|-+ +  |+|.|..+|+||.|||+..+++
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILD-LMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            344689999999999999999952  2889987 5  5688999999999999988764

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.75  E-value=1.2e-08  Score=75.50  Aligned_cols=42  Identities=14%  Similarity=0.151  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHA  157 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~  157 (232)
                      ...||+||+++|.+++..||+ +|..||. ++++||..||..+|
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~-~l~~Kt~~~cV~~Y   84 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLYY   84 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHH-TCTTCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHH-HcCCCCHHHHHHHH
Confidence            357999999999999999999 9999998 99999999999976

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.70  E-value=2.5e-08  Score=73.83  Aligned_cols=45  Identities=18%  Similarity=0.340  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      ...||+||.++|.+++..||++    |.+||++||+||..||.++|..-
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHhcc
Confidence            5789999999999999999986    99999999999999999999654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.69  E-value=1.7e-08  Score=85.19  Aligned_cols=49  Identities=22%  Similarity=0.382  Sum_probs=44.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      .....||+||+++|++|+.+||.+    |..||..|++||..||+.+|.....
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            346799999999999999999976    9999999999999999999986644

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.24  E-value=1.2e-06  Score=59.23  Aligned_cols=47  Identities=11%  Similarity=0.304  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHHHHHh--------CCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKY--------GKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~--------G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      .+||+|||..|++.|.+|        |..-|+.+++..++.+|-.+|++||.|++
T Consensus         3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            489999999999999999        55479999984599999999999888764

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.20  E-value=9.7e-06  Score=58.89  Aligned_cols=59  Identities=24%  Similarity=0.400  Sum_probs=50.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 026855            9 SYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLR   68 (232)
Q Consensus         9 ~~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~   68 (232)
                      ...|-.--.||+|||..+..++++-|. +++.|..||+.|.+|+..||.+|+.+|+..+.
T Consensus        27 ~s~Ge~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~   85 (95)
T 1ug2_A           27 SSTGEKVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            455556678999999999999999765 36779999999988999999999999977543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.17  E-value=4.1e-06  Score=61.59  Aligned_cols=51  Identities=12%  Similarity=0.178  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHccc
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAV-----VSRTPTQVASHAQKYFLRMNSV  167 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v-----~~RT~~q~~~~~~ky~~~~~~~  167 (232)
                      .+||.||+..|++++++||. +|..|+.. .     ++||..++++||-...+++...
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DR-y~~~~~~~Rt~EdLK~RyY~v~~~l~~~   86 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHDR-YDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHHH-SCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC-Ceeeehhh-hccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            47999999999999999999 99999994 5     6899999999887776666544

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.09  E-value=3.4e-06  Score=78.63  Aligned_cols=46  Identities=24%  Similarity=0.436  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      ....||.+|..+|.++|.+||.+    |..||..|++||..||+.+|...
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCCCCHHHHHHHHHHH
Confidence            46799999999999999999986    99999999999999999999765

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.08  E-value=1.2e-05  Score=59.04  Aligned_cols=50  Identities=22%  Similarity=0.347  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQV-----PGKSSVDVQRRYDDLVLDLRK   69 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~v-----pgRt~~qc~~ry~~ll~~~~~   69 (232)
                      ..||.||+..|.+++.+|+-    ||-.|+..+     ++||++++++||..+...+..
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~   85 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999976    499999999     589999999999988776543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.04  E-value=1e-05  Score=54.65  Aligned_cols=51  Identities=12%  Similarity=0.189  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCC-----CCchHHHHHH-hCCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEE-----TPGRWERIAR-QVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~-----~~~rW~~IA~-~vpgRt~~qc~~ry~~ll~   65 (232)
                      ..+||+|||.+|.+.|+.|...     ...-|..+|+ .+|++|-.+|++||...+.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            4689999999999999999321     3456999999 8999999999999988653

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=97.96  E-value=6.1e-05  Score=65.55  Aligned_cols=50  Identities=18%  Similarity=0.252  Sum_probs=41.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHh--CCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQ--VPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~--vpgRt~~qc~~ry~~ll~   65 (232)
                      .+.||+.|...|.+++.+||. ...||+.|+..  |+.|+...+..-|..+.+
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~-~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~   54 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGN-LKEILDELIADGTLPVKSFEKYGETYDEMME   54 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSS-CTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence            467999999999999999984 24589999764  568999999888877644

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.89  E-value=2.7e-05  Score=56.60  Aligned_cols=51  Identities=24%  Similarity=0.424  Sum_probs=45.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--CHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855          115 VPWTAEEHRLFLIGLEKYGKG--DWRSISRNAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g--~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      .-||.|||+.+|..+++-|..  .|..||+ .+++||+.||++|++.+++...+
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~-~L~Nks~nqV~~RFq~Lm~Lf~~   86 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHH-HHccCCHHHHHHHHHHHHHHHHH
Confidence            479999999999999999863  7999999 79999999999999987766554

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.93  E-value=4.2e-06  Score=57.64  Aligned_cols=54  Identities=17%  Similarity=0.281  Sum_probs=45.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 026855           11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLD   66 (232)
Q Consensus        11 ~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~   66 (232)
                      .|-.--.||+|||..+..++++-|. ++..|..||..| +||+.||.+||.+|+..
T Consensus        10 ~ge~vvlWTReeDR~IL~~cq~~G~-s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           10 KGEIIILWTRNDDRVILLECQKRGP-SSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            3334557999999999999998665 357799999999 89999999999998764

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.92  E-value=4.3e-06  Score=57.57  Aligned_cols=49  Identities=20%  Similarity=0.475  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--CHHHHHhhhcCCCCHHHHHHHHHHHHHHHc
Q 026855          115 VPWTAEEHRLFLIGLEKYGKG--DWRSISRNAVVSRTPTQVASHAQKYFLRMN  165 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g--~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~  165 (232)
                      .-||.|||+.+|..+++-|..  .|..||. .+ +||+.||.+|++.+.....
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~Lm~Lf~   65 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQLMKLFE   65 (70)
Confidence            369999999999999999863  7999998 57 9999999999988765544

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.26  E-value=0.00051  Score=60.63  Aligned_cols=49  Identities=29%  Similarity=0.565  Sum_probs=44.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~  164 (232)
                      +.||..+...|+.|+.+||+.+|..||. .|+|+|..+|+.+++-++.+.
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHG
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhH
Confidence            3699999999999999999999999999 799999999999987777665

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.24  E-value=0.0013  Score=48.18  Aligned_cols=50  Identities=22%  Similarity=0.346  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQVP-----GKSSVDVQRRYDDLVLDLRK   69 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp-----gRt~~qc~~ry~~ll~~~~~   69 (232)
                      ..||.||-..|-.++..|.-    ||-.|+....     .||++|.++||..+...+..
T Consensus        31 ~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~   85 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            57999999999999999975    4999999985     69999999999988776643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.08  E-value=0.00068  Score=48.64  Aligned_cols=54  Identities=15%  Similarity=0.400  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHH----CC--CCCCchHHHHHHhCC----CCCHHHHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVT----FP--EETPGRWERIARQVP----GKSSVDVQRRYDDLVLDLR   68 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~----~p--~~~~~rW~~IA~~vp----gRt~~qc~~ry~~ll~~~~   68 (232)
                      ...||.+|..+|+.+...    |.  ......|+.||..|.    .||+.||..+|+.|.....
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk   67 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK   67 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            567999999999999754    21  112346999999976    6999999999999987543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.05  E-value=0.00085  Score=48.10  Aligned_cols=53  Identities=15%  Similarity=0.347  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHHh----CCC-----CHHHHHhhhcC----CCCHHHHHHHHHHHHHHHccc
Q 026855          114 GVPWTAEEHRLFLIGLEKY----GKG-----DWRSISRNAVV----SRTPTQVASHAQKYFLRMNSV  167 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~----G~g-----~W~~Ia~~~v~----~RT~~q~~~~~~ky~~~~~~~  167 (232)
                      ...||.+|-.+||.+...+    ..+     .|..||.. +.    .||+.||+.+|..+....+..
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~-m~~~G~~rs~~qC~~K~~nL~k~Yk~~   69 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSK-MREKGFDRSPDMCTDKWRNLLKEFKKA   69 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3579999999999998753    111     69999984 33    799999999999877666554

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.03  E-value=0.0019  Score=47.25  Aligned_cols=51  Identities=12%  Similarity=0.171  Sum_probs=44.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhhc----CCCCHHHHHHHHHHHHHHHccc
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAV----VSRTPTQVASHAQKYFLRMNSV  167 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v----~~RT~~q~~~~~~ky~~~~~~~  167 (232)
                      .||.||-..|++++++|+. +|-.|+..|-    +.||..+++.||-...+++...
T Consensus        32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~   86 (93)
T 4iej_A           32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            6999999999999999999 9999998653    4799999999887777776544

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.14  E-value=0.0076  Score=49.81  Aligned_cols=51  Identities=18%  Similarity=0.262  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--CCCHHHHHhh-hcCCCCHHHHHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYG--KGDWRSISRN-AVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G--~g~W~~Ia~~-~v~~RT~~q~~~~~~ky~~~~  164 (232)
                      ...||+.|-+.|+.++.+||  .++|..|+++ -+.+||..+++..+..+..+.
T Consensus         7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            35799999999999999999  6799999873 267999999998777665543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.83  E-value=0.1  Score=35.39  Aligned_cols=51  Identities=16%  Similarity=0.159  Sum_probs=40.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 026855           14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVP--GKSSVDVQRRYDDLVL   65 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp--gRt~~qc~~ry~~ll~   65 (232)
                      ..-.||+|.-+.|..||..+|.+ .-.+..|.+.|.  |.|..+|..|.+.+-.
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~-~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTT-TCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCC-CCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            45689999999999999999843 334888988865  8899999988776543

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=93.64  E-value=0.11  Score=46.84  Aligned_cols=50  Identities=24%  Similarity=0.493  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC-CCCHHHHHHHHHHHHHHHc
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV-SRTPTQVASHAQKYFLRMN  165 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~-~RT~~q~~~~~~ky~~~~~  165 (232)
                      +.||.-+=..|+.|+.+||+.+-..||. .|. ++|..+|+..++-|+.|..
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~Ry~  174 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSNIE  174 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHTCS
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHhhh
Confidence            3699999999999999999999999999 687 9999999987776665543

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=86.77  E-value=0.51  Score=40.73  Aligned_cols=30  Identities=30%  Similarity=0.624  Sum_probs=27.1

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHh
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQ   47 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~   47 (232)
                      .+.|+.+||..|...|.+||-|.   |+.|..-
T Consensus       168 ~c~W~~~dD~~LLvGIykyGyG~---We~Ir~D  197 (270)
T 2xb0_X          168 SSNWTKEEDEKLLIGVFKYGYGS---WTQIRDD  197 (270)
T ss_dssp             SSCCCHHHHHHHHHHHHHHCTTC---HHHHHHC
T ss_pred             CCCcChHHHHHHHHHHHHHcCCc---HHHHhcC
Confidence            57899999999999999999986   9999863

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=81.80  E-value=3  Score=29.48  Aligned_cols=48  Identities=27%  Similarity=0.300  Sum_probs=34.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC-CHH--------------HHHh----hhcCCCCHHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKG-DWR--------------SISR----NAVVSRTPTQVASHAQKYFL  162 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g-~W~--------------~Ia~----~~v~~RT~~q~~~~~~ky~~  162 (232)
                      +-|.++=+..|++||..|.+- .++              .||.    ..-..||..||.+|-|-.-+
T Consensus         7 ~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~   73 (82)
T 2hzd_A            7 GVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAR   73 (82)
T ss_dssp             CCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHH
Confidence            469999999999999999642 221              2232    13468999999998886533

>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=80.77  E-value=7.4  Score=26.91  Aligned_cols=52  Identities=12%  Similarity=0.224  Sum_probs=42.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDD   62 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~   62 (232)
                      ++|++....|.+....|++.+...+--+...=+.||..+ |=|..||.-=+.+
T Consensus         2 ~~g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t-gLte~qIkvWFqN   53 (76)
T 2ecc_A            2 SSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT-GLPRPEIIQWFGD   53 (76)
T ss_dssp             CCSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-CcCHHHhhHHhHh
Confidence            578889999999999999999986654555678899999 8999988764443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	2e-16
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	5e-05
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-16
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-06
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	5e-15
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	4e-12
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-09
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	3e-05
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-04
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-08
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	8e-06
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	7e-08
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-04
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-06
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	9e-05
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-05
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-04
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-04
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-04
d1wgxa_	73	a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1	8e-04
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	0.001
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	0.002
d1ofcx1	52	a.4.1.3 (X:799-850) SANT domain of the nucleosome	0.002
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	0.004
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	0.004

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (169), Expect = 2e-16
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGL 74
          +  WT E+     R++V FP  TPGRWE+IA ++ G+S  DV  +   L   +     G+
Sbjct: 1  APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTC-SPGM 58

Query: 75 V 75
          V
Sbjct: 59 V 59

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 5e-05
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 117 WTAEEHRLFLIGLEKYGKGD---WRSISRNAVVSRTPTQVASHAQK 159
           WT E+       + K+  G    W  I+    + R+ T V + A++
Sbjct: 4   WTEEDLSQLTRSMVKFPGGTPGRWEKIAH--ELGRSVTDVTTKAKQ 47

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 68.4 bits (167), Expect = 3e-16
 Identities = 25/60 (41%), Positives = 41/60 (68%)

Query: 16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLV 75
            W+ +E+K FERAL  + ++TP RW  +AR V G++  +V++ Y+ LV D++ IE+G V
Sbjct: 2  RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKV 61

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 41.5 bits (97), Expect = 3e-06
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNA--VVSRTPTQVASH 156
           G PW+A+E++ F   L  Y K      +  A  V  RTP +V  H
Sbjct: 1   GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKH 45

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 65.3 bits (159), Expect = 5e-15
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 109 TERRKGVPWTAEEHRLFLIGLEKYGKGDWR--SISRN-AVVSRTPTQVASHAQKYFLRM 164
            +++  V WT E H  FL  ++  G        I     V   T   VASH QK+ + +
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (138), Expect = 4e-12
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 117 WTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKR 173
           W+A E  LF   LEKYGK D+  I ++ +  ++ T +  +   Y  +       +KR
Sbjct: 4   WSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY--YMWKTTDRYVQQKR 57

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 1e-09
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 108 ETERRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSV 167
             +R+    W+ +E   F     ++ K ++  I+   +  +T  +   +   Y+L   + 
Sbjct: 11  YKDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASF-LERKTVAECVLY---YYLTKKNE 65

Query: 168 R 168
            
Sbjct: 66  N 66

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 18 WTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
          W+ +E + F    +  P+     +  IA  +  K+  +    Y
Sbjct: 20 WSEQEKETFREKFMQHPK----NFGLIASFLERKTVAECVLYY 58

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 2e-09
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query: 11 SASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL 63
          + S    WT+ + KL E AL  +P  +   W++IAR VP KS  D   RY  L
Sbjct: 8  ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 104 SRDRETERRKGVPWTAEEHRLFLIGLEKYGK---GDWRSISRNAVVSRTPTQVASH 156
           S  +E  R    PWT  + +L  + L++Y +     W  I+R  V S++     + 
Sbjct: 2   SLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIAR 56

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 3e-08
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 111 RRKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMN 165
           ++    WT EE  L +  + KYG+ D+++IS   + +++  QV +    Y  R N
Sbjct: 2   QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDV-IGNKSVVQVKNFFVNYRRRFN 54

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 8e-06
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
           ++ WT EE  L  +A+     +    ++ I+  +  KS V V+  +
Sbjct: 4  CNARWTTEEQLLAVQAI----RKYGRDFQAISDVIGNKSVVQVKNFF 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 7e-08
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 117 WTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF 161
           WTA+E    L  +   G G+W+ ++   + ++T  +   H  KYF
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQ-MCTKTKEECEKHYMKYF 47

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 3e-04
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 17 SWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
          SWT +E+     A++       G W+ +A Q+  K+  + ++ Y
Sbjct: 3  SWTAQEEMALLEAVMDCG---FGNWQDVANQMCTKTKEECEKHY 43

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSVRKDKKRS 174
           V WT EE  LF  GL K+G+  W  IS+  + SRT  QV S+A++YF        DK+  
Sbjct: 3   VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 175 S 175
           +
Sbjct: 61  N 61

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 9e-05
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
          S  WT EE +LFE+ L  F      RW +I++ +  ++ + V+   
Sbjct: 2  SVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYA 43

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 2e-05
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV-SRTPTQV 153
           ++   W  EE +    G+ KYG+G+W  I  +    +RT   +
Sbjct: 1   KRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML 42

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 7e-05
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVV-SRTPTQV 153
           +K   WT EE      G++KYG+G+W +IS+N    +RT   +
Sbjct: 1   KKQ-KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 11 SASTSSSWTREEDKLFERALVTFPEE--TPGRWERIARQVPGKSSVDVQRRYDDLV 64
          +      WTRE D++    L    E+   P  +  I++Q+  K+ V+V  R+ +L+
Sbjct: 29 TGEKVVLWTREADRVI---LTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (81), Expect = 4e-04
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
          + WTREED+   + LV   +     W+ IA  +P ++ V  Q R+
Sbjct: 2  TRWTREEDEKL-KKLVE--QNGTDDWKVIANYLPNRTDVQCQHRW 43

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (79), Expect = 7e-04
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKY 160
            WT EE       +E+ G  DW+ I+   + +RT  Q     QK 
Sbjct: 3   RWTREEDEKLKKLVEQNGTDDWKVIANY-LPNRTDVQCQHRWQKV 46

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 8e-04
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
          S    W  +E +    A  + P+  PG W  +A  V  +S  + QR+Y
Sbjct: 6  SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY 53

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.6 bits (77), Expect = 0.001
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
          +SWT EED++    +    +    RW  IA+ +PG++   ++  +
Sbjct: 2  TSWTEEEDRI----IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 42

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVS---RTPTQVASHAQKYFLRMNSVRKDKK 172
           P++  E    +  +E  G G WR +   A  +   RT   +    +   +   S+   ++
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL-VHTASIAPQQR 60

Query: 173 RSS 175
           R  
Sbjct: 61  RGE 63

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 117 WTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSV 167
           WT  +   F+   EKYG+ D  +I+   V  +TP +V  +   ++ R   +
Sbjct: 2   WTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERCTEL 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.4 bits (74), Expect = 0.004
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRY 60
            WT+EED+     LV   +  P RW  IA+ + G+     + R+
Sbjct: 4  GPWTKEEDQRL-IKLVQ--KYGPKRWSVIAKHLKGRIGKQCRERW 45

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.4 bits (74), Expect = 0.004
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKY 160
            KG PWT EE +  +  ++KYG   W  I+++ +  R   Q       +
Sbjct: 2   IKG-PWTKEEDQRLIKLVQKYGPKRWSVIAKH-LKGRIGKQCRERWHNH 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.79
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.7
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.65
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.64
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.64
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.63
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.62
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.55
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.55
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.54
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.52
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.5
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.5
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.48
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.48
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.43
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.42
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.39
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.37
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.35
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.35
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.33
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.33
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.29
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	99.28
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.26
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.21
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.14
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.11
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.05
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.96
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.81
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	98.74
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	97.96
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	97.61
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	97.41
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.03
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.99
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.93
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.14
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.02
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	94.92
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	91.97
d2ecca1	76	Homeobox-leucine zipper protein Homez {Human (Homo	86.9

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.79  E-value=2e-19  Score=122.91  Aligned_cols=61  Identities=41%  Similarity=0.833  Sum_probs=58.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDLRKIEAGLVE   76 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~~~ie~g~~~   76 (232)
                      .+||+|||++|.+|+.+||.+.+++|.+||.+|||||..||++||..|+.+++.|++|.++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~iesg~vp   62 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP   62 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccccCCCC
Confidence            6799999999999999999999999999999999999999999999999999999999765

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.8e-18  Score=108.37  Aligned_cols=45  Identities=29%  Similarity=0.657  Sum_probs=43.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      .||.|||.+|+++|++||.++|..||. +|++||+.||++||++||
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~-~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHH-HcCCCCHHHHHHHHHHhC
Confidence            499999999999999999989999999 899999999999999996

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=8.2e-17  Score=105.64  Aligned_cols=47  Identities=26%  Similarity=0.483  Sum_probs=44.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      +++||+|||++|++++.+||.++|..||+ ++++||+.||++||++|+
T Consensus         3 rg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHCCCCHHHHHHHHHhhC
Confidence            46899999999999999999889999999 899999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=107.03  Aligned_cols=54  Identities=39%  Similarity=0.680  Sum_probs=49.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      .+.....+||.|||++|++||.+||.+++.+|.+||++|||||..||+.||+.|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            444567889999999999999999999889999999999999999999999865

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.7e-16  Score=103.23  Aligned_cols=46  Identities=30%  Similarity=0.466  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      +.||+|||++|+.+|.+||.++|..||. +|+|||+.||+.||++|+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHCCCCHHHHHHHHHhhC
Confidence            4799999999999999999889999999 899999999999999986

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.6e-16  Score=106.46  Aligned_cols=50  Identities=40%  Similarity=0.780  Sum_probs=47.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLD   66 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~   66 (232)
                      .+||++|+++|++||++||.++++||++||++| |||++||+.||+.+.++
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~   51 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   51 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999 99999999999998763

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.7e-16  Score=106.34  Aligned_cols=50  Identities=44%  Similarity=0.708  Sum_probs=47.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHccc
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNSV  167 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~~  167 (232)
                      .||+|||.+|+++|.+||+ +|..||. +|++||+.||++||++|+.+..+.
T Consensus         4 ~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~ry~~~~~~~~k~   53 (65)
T d2cu7a1           4 KWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKC   53 (65)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCHHHHHHHHHHHHHhcc-hHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhc
Confidence            6999999999999999998 9999999 899999999999999999887654

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.2e-16  Score=101.46  Aligned_cols=45  Identities=24%  Similarity=0.556  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYF  161 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~  161 (232)
                      .+||+|||++|++++++||. +|..||+ +|||||..||++||..++
T Consensus         2 ~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhh-HHHHHHh-HcCCCCHHHHHHHHHHHc
Confidence            48999999999999999999 9999999 899999999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=9.3e-17  Score=115.89  Aligned_cols=51  Identities=22%  Similarity=0.390  Sum_probs=45.8

Q ss_pred             CCCCCHHHHHHHHHHHHHCCC--CCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPE--ETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~--~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      .+.||+|||++|.++|.+||.  +...+|..||.+|||||..||++||...|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~   53 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLS   53 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTG
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            368999999999999999974  234569999999999999999999999987

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.4e-15  Score=97.23  Aligned_cols=47  Identities=26%  Similarity=0.478  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhh-cCCCCHHHHHHHHHHH
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGDWRSISRNA-VVSRTPTQVASHAQKY  160 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~-v~~RT~~q~~~~~~ky  160 (232)
                      ..+||+|||++|+++|.+||.|+|..||+.+ +.+||+.||+.+|+.|
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl   49 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            3589999999999999999999999999842 4599999999999876

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.54  E-value=6.8e-15  Score=99.99  Aligned_cols=50  Identities=34%  Similarity=0.651  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHHHHHHHc
Q 026855          115 VPWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQKYFLRMN  165 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~  165 (232)
                      .+||.|||.+|+.+|.+||.|   +|..||. +|+|||..||++||+.+...++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~-~l~gRt~~qc~~r~~~L~~dik   54 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDIK   54 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHH-HcCCCCHHHHHHHHHHHHHHhh
Confidence            479999999999999999987   4999999 8999999999999976655444

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=96.34  Aligned_cols=48  Identities=33%  Similarity=0.615  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhh-cCCCCHHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNA-VVSRTPTQVASHAQKYFL  162 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~-v~~RT~~q~~~~~~ky~~  162 (232)
                      .+||+|||++|+++|++||.|+|..||+.+ +++||+.||+.||+.|.+
T Consensus         3 ~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            589999999999999999988999999842 569999999999988743

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.8e-14  Score=96.93  Aligned_cols=46  Identities=26%  Similarity=0.610  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHH
Q 026855          113 KGVPWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQK  159 (232)
Q Consensus       113 ~~~~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~k  159 (232)
                      ...+||+|||.+|+++|.+||.|   +|..||. +|||||+.||+.||+.
T Consensus        11 ~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~-~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1          11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKL   59 (60)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCccchHHHHHHH-HcCCCCHHHHHHHHHH
Confidence            34589999999999999999987   5999999 8999999999999963

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.7e-14  Score=93.60  Aligned_cols=47  Identities=28%  Similarity=0.621  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      +.||+|||++|.++|.+||.+.   |..||.+|||||..||++||..+|+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~---W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTDD---WKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSC---HHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            5799999999999999998653   9999999999999999999999876

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.6e-14  Score=91.52  Aligned_cols=45  Identities=22%  Similarity=0.448  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~l   63 (232)
                      ..||.|||.+|.+||.+||.+.   |..||++|+|||+.||+.||.++
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~~n---W~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGFGN---WQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCTTC---HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCcc---HHHHHHHcCCCCHHHHHHHHHHh
Confidence            4699999999999999998653   99999999999999999999864

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.7e-14  Score=94.38  Aligned_cols=48  Identities=21%  Similarity=0.542  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      .++||+|||++|.+++.+||.+.   |..||++|||||..||++||..+|+
T Consensus         3 rg~WT~eED~~L~~~v~~~g~~~---W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGPKR---WSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTC---HHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            57899999999999999998653   9999999999999999999998875

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.6e-14  Score=96.29  Aligned_cols=46  Identities=30%  Similarity=0.538  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFL  162 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~  162 (232)
                      ..||+||+.+|+++|.+||+ +|..||+ +|+|||..||++||.+|.+
T Consensus         6 ~~WT~eE~~~f~~~~~~~G~-~w~~Ia~-~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           6 ARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             SSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHhCc-hHHHHHH-HcCCCCHHHHHHHHHHHHh
Confidence            47999999999999999998 9999999 8999999999999887643

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.2e-13  Score=88.41  Aligned_cols=46  Identities=26%  Similarity=0.662  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLV   64 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll   64 (232)
                      .++||+|||++|.+++.+||..    |..||.+|||||..||+.||..++
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~----W~~Ia~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNR----WAEIAKLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSC----HHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhhH----HHHHHhHcCCCCHHHHHHHHHHHc
Confidence            3689999999999999999854    999999999999999999998875

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.2e-14  Score=97.36  Aligned_cols=46  Identities=13%  Similarity=0.109  Sum_probs=42.0

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHH
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQK  159 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~k  159 (232)
                      +...+||+||+.+|+++|.+||+ +|..||+ +|+|||..||++||..
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~-~~~~rt~~q~~~~yy~   60 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLYYYL   60 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTS-CSSSHHH-HTTTSCHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCC-cHHHHHH-HcCCCCHHHHHHHHHH
Confidence            34468999999999999999998 9999999 8999999999998754

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.6e-13  Score=98.64  Aligned_cols=49  Identities=20%  Similarity=0.259  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC-----HHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGD-----WRSISRNAVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~-----W~~Ia~~~v~~RT~~q~~~~~~ky~~~~  164 (232)
                      ++||+|||++|+.++.+||..+     |..||. +|||||..||++||++|+...
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~-~lpgRt~~qcr~Rw~~~L~p~   55 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKR   55 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGG
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHH-HcCCCCHHHHHHHHHHHcCcc
Confidence            4799999999999999999743     999999 899999999999999986653

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.35  E-value=8.2e-13  Score=94.26  Aligned_cols=47  Identities=15%  Similarity=0.333  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHh----CCCCCHHHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQ----VPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~----vpgRt~~qc~~ry~~ll~   65 (232)
                      .+||.|||++|.++|.+||.+.   |..||..    +++||..||++||..++.
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~---W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGR---WRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSC---HHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCccc---HHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            4799999999999999998764   9999985    689999999999999986

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.35  E-value=1.2e-12  Score=93.40  Aligned_cols=49  Identities=20%  Similarity=0.393  Sum_probs=44.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHH
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRNA---VVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~---v~~RT~~q~~~~~~ky~~~~  164 (232)
                      +||.|||++|+.+|.+||.|+|..|++.+   +++||+.||+.+|.+|+..-
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~   53 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhh
Confidence            79999999999999999999999999843   68999999999999987543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.33  E-value=1.4e-12  Score=88.37  Aligned_cols=56  Identities=32%  Similarity=0.414  Sum_probs=46.7

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCH--HHHHhhh-cCCCCHHHHHHHHHHHHHHHccc
Q 026855          112 RKGVPWTAEEHRLFLIGLEKYGKGDW--RSISRNA-VVSRTPTQVASHAQKYFLRMNSV  167 (232)
Q Consensus       112 ~~~~~WT~eEd~~l~~~l~~~G~g~W--~~Ia~~~-v~~RT~~q~~~~~~ky~~~~~~~  167 (232)
                      +.+..||+|||+.|+.||..+|.++|  +.|...+ |+++|..||++|+|||+.++.+.
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k~   63 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            34457999999999999999998444  5776632 89999999999999999988653

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1e-12  Score=89.37  Aligned_cols=48  Identities=27%  Similarity=0.583  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLD   66 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~   66 (232)
                      +..||+|||.+|.+||.+||.+    |..||.+|||||..||+.||..++..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSC----HHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcch----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999864    99999999999999999999988764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.9e-12  Score=83.51  Aligned_cols=47  Identities=23%  Similarity=0.504  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC--CCCHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQVP--GKSSVDVQRRYDDLV   64 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp--gRt~~qc~~ry~~ll   64 (232)
                      ..+||+|||++|.++|.+||.+.   |..||..++  |||..||++||..+.
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~~---W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEGN---WSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC---HHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            46899999999999999998754   999999866  899999999999875

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=4.8e-12  Score=83.95  Aligned_cols=42  Identities=33%  Similarity=0.515  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHH
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQ  158 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~  158 (232)
                      .||+||..+|++||.+||+ +|..|++.+||+||..||.++|-
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~Ks~~~~v~fYY   44 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY   44 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence            6999999999999999999 99999975789999999999874

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.8e-12  Score=82.95  Aligned_cols=48  Identities=19%  Similarity=0.486  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHh--CCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRWERIARQ--VPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~--vpgRt~~qc~~ry~~ll~   65 (232)
                      ..+||+|||++|.++|.+||.+.   |..||..  +++||..||++||..++.
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~~---W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEGN---WAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCh---HHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            46899999999999999998653   9999998  459999999999999876

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6.8e-12  Score=85.26  Aligned_cols=48  Identities=23%  Similarity=0.389  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      ....||++|+.+|.+++.+||.+    |..||++|||||..||+.+|..+..
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCch----HHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45679999999999999999965    9999999999999999999987643

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.1e-11  Score=83.50  Aligned_cols=48  Identities=17%  Similarity=0.308  Sum_probs=43.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHH
Q 026855           13 STSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLV   64 (232)
Q Consensus        13 ~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll   64 (232)
                      ....+||+||+.+|..++.+||.+    |..||.+|||||..||+.+|....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSC----SSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCc----HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345789999999999999999865    999999999999999999997653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=5.7e-11  Score=85.79  Aligned_cols=51  Identities=24%  Similarity=0.415  Sum_probs=45.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCC---HHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855          114 GVPWTAEEHRLFLIGLEKYGKGD---WRSISRNAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       114 ~~~WT~eEd~~l~~~l~~~G~g~---W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      ...||.|||+.||+.++++|. +   |..||+ ++++||+.||++||+.+++.+..
T Consensus        33 ~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~-~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_          33 VVLWTREADRVILTMCQEQGA-QPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence            357999999999999999997 6   999999 89999999999999877666543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=3.2e-10  Score=81.77  Aligned_cols=64  Identities=23%  Similarity=0.373  Sum_probs=52.5

Q ss_pred             ccccCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 026855            3 HNKIDYSYSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLDL   67 (232)
Q Consensus         3 ~n~~~~~~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~~   67 (232)
                      ++.++-..+|.....||+|||++|...+++++. ...-|..||+.|+|||..||++||..|+...
T Consensus        21 A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          21 ANNSKVSSTGEKVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             cccCccCCCCCccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            344444456667788999999999999999983 2344999999999999999999999987754

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5.4e-10  Score=74.12  Aligned_cols=43  Identities=26%  Similarity=0.560  Sum_probs=39.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHHH
Q 026855          116 PWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQKY  160 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~ky  160 (232)
                      .||.||+.+|..||.+|+.|   +|..||. +| |||..||..||+.+
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~-~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcHHHHHHHH-HH-CCCHHHHHHHHHHH
Confidence            69999999999999999977   8999999 78 89999999988754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=4.2e-09  Score=69.39  Aligned_cols=44  Identities=27%  Similarity=0.456  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHH-hCCCCCHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIAR-QVPGKSSVDVQRRYDDL   63 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~-~vpgRt~~qc~~ry~~l   63 (232)
                      ..||+||.++|++++.+||.+    |..||+ .||+||..||..+|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKd----f~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHccc----HHHHHHHHcCCCCHHHHHHHHHHH
Confidence            479999999999999999987    999998 57999999999999754

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.9e-08  Score=67.55  Aligned_cols=51  Identities=25%  Similarity=0.550  Sum_probs=47.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHH
Q 026855           14 TSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLV   64 (232)
Q Consensus        14 ~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll   64 (232)
                      ...+|+++|+..|..||+.+|.+.+..|..||..|+.||++||...|..-.
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~   57 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCc
Confidence            356999999999999999999999999999999999999999999997653

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.96  E-value=6.8e-06  Score=52.36  Aligned_cols=46  Identities=22%  Similarity=0.351  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026855           17 SWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        17 ~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~   65 (232)
                      .||+.|...|++|+.+||.+.   -+.||..|.|||.+||..+++.+-.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d---~~~Ia~e~~~Kt~eEV~~Y~~vFw~   46 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDD---IDNIAKDVEGKTPEEVIEYNAVFWE   46 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTC---HHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhh---HHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            499999999999999999864   8999999999999999888776543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.61  E-value=0.0001  Score=46.69  Aligned_cols=50  Identities=28%  Similarity=0.558  Sum_probs=45.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHcc
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      .||.-|=..|+.|+.+||+.+-..||. .|.|||+.+|+..++.+..|.+.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~-e~~~Kt~eEV~~Y~~vFw~ry~e   50 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERCTE   50 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHH-HhcCCCHHHHHHHHHHHHHHHHh
Confidence            399999999999999999999999999 69999999999988887777643

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.41  E-value=0.00014  Score=54.57  Aligned_cols=52  Identities=17%  Similarity=0.273  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---HHHHHhh-----------hcCCCCHHHHHHHHHHHHHHHcc
Q 026855          115 VPWTAEEHRLFLIGLEKYGKGD---WRSISRN-----------AVVSRTPTQVASHAQKYFLRMNS  166 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g~---W~~Ia~~-----------~v~~RT~~q~~~~~~ky~~~~~~  166 (232)
                      ..+|+|||+.||..+.+||-|+   |..|..+           |+.+||+.++..|..-.+.-+.+
T Consensus        50 k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~k  115 (128)
T d1ofcx2          50 KNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIER  115 (128)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999998   9998654           89999999999999866555443

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.03  E-value=0.001  Score=43.81  Aligned_cols=48  Identities=21%  Similarity=0.241  Sum_probs=38.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCchH--HHHHHh--CCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEETPGRW--ERIARQ--VPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~~~~rW--~~IA~~--vpgRt~~qc~~ry~~ll~   65 (232)
                      .-.||+|+-+.|..|+..+|.+   +|  ..|.+.  ++|+|..||.-|.+.+..
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~---~atpk~I~~~m~v~~lT~~qV~SHlQKYrl   58 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVE---RAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTT---TCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcc---ccchHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            5579999999999999999865   24  566666  679999999988877643

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0011  Score=43.90  Aligned_cols=46  Identities=24%  Similarity=0.416  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKG---DWRSISRNAVVSRTPTQVASHAQKYFLRM  164 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g---~W~~Ia~~~v~~RT~~q~~~~~~ky~~~~  164 (232)
                      ..|+++|=.+|-.++..+++.   =|..+|. .|++||..+|..   +|....
T Consensus         9 ~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~-~VGtRSaeECQ~---ky~~~~   57 (73)
T d1wgxa_           9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQR---KYMENP   57 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHH---HHHHSS
T ss_pred             cccCHHHHHHHHHHHHhcCCCCCccHHHHHH-HHccCCHHHHHH---HHHhCc
Confidence            469999999999999998864   5999999 899999999999   665543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.0019  Score=39.06  Aligned_cols=43  Identities=23%  Similarity=0.423  Sum_probs=36.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhh--hcCCCCHHHHHHHHHH
Q 026855          116 PWTAEEHRLFLIGLEKYGKGDWRSISRN--AVVSRTPTQVASHAQK  159 (232)
Q Consensus       116 ~WT~eEd~~l~~~l~~~G~g~W~~Ia~~--~v~~RT~~q~~~~~~k  159 (232)
                      .||.||-.-|..|+++||. .|..|-=.  |-+||+....+..|.+
T Consensus         3 nft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           3 DFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            6999999999999999999 99999532  6789999988875443

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.004  Score=40.18  Aligned_cols=46  Identities=9%  Similarity=0.265  Sum_probs=38.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--------CHHHHHhhhcCCCCHHHHHHHHHHH
Q 026855          115 VPWTAEEHRLFLIGLEKYGKG--------DWRSISRNAVVSRTPTQVASHAQKY  160 (232)
Q Consensus       115 ~~WT~eEd~~l~~~l~~~G~g--------~W~~Ia~~~v~~RT~~q~~~~~~ky  160 (232)
                      .++|.|||+.|+.-|.++..+        =|+.++++-++.+|-..-++||.|.
T Consensus         3 ~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~   56 (59)
T d1fexa_           3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH   56 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            489999999999999998532        3999996458999999999976654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.014  Score=35.15  Aligned_cols=44  Identities=27%  Similarity=0.582  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC---CCCHHHHHHHHHHH
Q 026855           16 SSWTREEDKLFERALVTFPEETPGRWERIARQVP---GKSSVDVQRRYDDL   63 (232)
Q Consensus        16 ~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp---gRt~~qc~~ry~~l   63 (232)
                      ..||+||..-|-+.|.+||..    |..|-=.+|   ||++.+....|..+
T Consensus         2 knft~eEv~YL~~GVK~~G~~----WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcch----hhhhhhccCCCCCchhhHHHHHHHhh
Confidence            469999999999999999876    999998888   99999999998765

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.026  Score=36.17  Aligned_cols=51  Identities=12%  Similarity=0.189  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCC-----CCchHHHHHH-hCCCCCHHHHHHHHHHHHH
Q 026855           15 SSSWTREEDKLFERALVTFPEE-----TPGRWERIAR-QVPGKSSVDVQRRYDDLVL   65 (232)
Q Consensus        15 ~~~WT~eEd~~L~~av~~~p~~-----~~~rW~~IA~-~vpgRt~~qc~~ry~~ll~   65 (232)
                      ..++|.+||++|.+-|+.+...     ...-|..++. .+|.+|-..-++||.+.|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            4679999999999999998443     2445999995 6899999999999987653

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.97  E-value=0.23  Score=36.42  Aligned_cols=56  Identities=16%  Similarity=0.347  Sum_probs=46.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCC------------CCCHHHHHHHHHHHHHHH
Q 026855           12 ASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVP------------GKSSVDVQRRYDDLVLDL   67 (232)
Q Consensus        12 ~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vp------------gRt~~qc~~ry~~ll~~~   67 (232)
                      +..+...|+|||.-|.-.+.+||-+..+-|+.|-..+.            .||+.++..|-..|+.-+
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            34456799999999999999999987777999865443            899999999998887654

>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox-leucine zipper protein Homez
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.90  E-value=1.3  Score=28.85  Aligned_cols=56  Identities=11%  Similarity=0.187  Sum_probs=44.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCchHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 026855           10 YSASTSSSWTREEDKLFERALVTFPEETPGRWERIARQVPGKSSVDVQRRYDDLVLD   66 (232)
Q Consensus        10 ~~~~~~~~WT~eEd~~L~~av~~~p~~~~~rW~~IA~~vpgRt~~qc~~ry~~ll~~   66 (232)
                      +++++....|+++.++|+..++..+.-+...-..||..+ |-+..+|..=+.+--..
T Consensus         2 s~~s~~~r~T~eQ~~~Le~~F~~n~~Ps~~~~~~La~~~-gL~~~qV~~WF~NrR~k   57 (76)
T d2ecca1           2 SSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT-GLPRPEIIQWFGDTRYA   57 (76)
T ss_dssp             CCSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence            455667789999999999999997755555678999999 89999998777665443