Citrus Sinensis ID: 026863

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
MASTTTPSISLQSNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWISLYEIRYCCVTDDCFSLTLHSKWSEIFH
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHccccccccEEEEEccccccccccEEEEccccccccHHHHHHHHHHHHHcccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccEccccEEEcHHHHHHHHHHHccccccEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHHcccEEEEEccccccHHHEEEEcccccccEEEEEEccccccHHcccEEEccccccccHHHHHHHHHHHHcccccccHHHHcc
mastttpsislqsnssrtsflsspgpkcpkpfqitglklpflshsikfthvkssvtdkynevvVDEEMDRIRRLqngsdvrgvalegekgrtvdltPSAVEAIAESFGEWVIRSLenergrpvedvkvslgkdprvsgpslSVAVFAGLARAGCLvfdmglattpacfmstllppfaydaSIMVGYMYKVNNFNRIAIEFAFWISLYEIRYccvtddcfsltlhskwseifh
mastttpsislqsnssrtsfLSSPGPKCPKPFQITGLKLPFLSHSIKFthvkssvtdkynevVVDEEMdrirrlqngsdvrgvalegekgrtvdltpsAVEAIAESFGEWVIrslenergrpvedvkvslgkdprvsgpSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWISLYEIRYCCVTDDCFSLTLHSKWSEIFH
MASTTTPSISLQSNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWISLYEIRYCCVTDDCFSLTLHSKWSEIFH
*******************************FQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRR********GVAL******TVDLTPSAVEAIAESFGEWVIRSL************************SLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWISLYEIRYCCVTDDCFSLTLHSKWSE***
***********************************************FTHVKSS**************DRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLE*****PVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWISLYEIRYCCVTDDCFSLTLHS*******
*************************PKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWISLYEIRYCCVTDDCFSLTLHSKWSEIFH
**********************SPGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENE****VEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWISLYEIRYCCVTDDCFSLTLHSKWS*IFH
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASTTTPSISLQSNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWISLYEIRYCCVTDDCFSLTLHSKWSEIFH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query232 2.2.26 [Sep-21-2011]
B9MMU5 449 Phosphoglucosamine mutase yes no 0.431 0.222 0.301 3e-05
A4XH45 449 Phosphoglucosamine mutase yes no 0.431 0.222 0.301 3e-05
Q88C93 463 Phosphomannomutase/phosph yes no 0.370 0.185 0.315 5e-05
B0KD39 447 Phosphoglucosamine mutase no no 0.461 0.239 0.330 0.0002
B0K5X4 447 Phosphoglucosamine mutase no no 0.461 0.239 0.330 0.0002
Q88BD4 465 Phosphomannomutase/phosph yes no 0.383 0.191 0.315 0.0002
Q03VW4 455 Phosphoglucosamine mutase yes no 0.409 0.208 0.321 0.0002
Q6AD28 453 Phosphoglucosamine mutase yes no 0.331 0.169 0.397 0.0004
B8DWH9 454 Phosphoglucosamine mutase yes no 0.370 0.189 0.343 0.0004
Q8TWY8 452 Probable phosphoglucosami no no 0.301 0.154 0.337 0.0004
>sp|B9MMU5|GLMM_CALBD Phosphoglucosamine mutase OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=glmM PE=3 SV=1 Back     alignment and function desciption
 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGY 186
           K+ +GKD R+S   L  A+ AGL   G  V+  G+ TTPA  ++ L+    +DA IM+  
Sbjct: 42  KILIGKDTRISCDMLEAALCAGLTSVGADVYLAGVVTTPA--IAYLVKSHGFDAGIMISA 99

Query: 187 MYKVNNFNRIAIEFAFWISLYEIRYCCVTDDCFSLTLHSKWSEIFH 232
            +    FN I    +    L +     + +    + L+ KW E+ H
Sbjct: 100 SHNPYEFNGIKFFNSQGFKLSD----QIEEKIEDIILNKKWDEVPH 141
Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate.
Anaerocellum thermophilum (strain DSM 6725 / Z-1320) (taxid: 521460)
EC: 5EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 0
>sp|A4XH45|GLMM_CALS8 Phosphoglucosamine mutase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|Q88C93|ALGC_PSEPK Phosphomannomutase/phosphoglucomutase OS=Pseudomonas putida (strain KT2440) GN=algC PE=3 SV=1 Back     alignment and function description
>sp|B0KD39|GLMM_THEP3 Phosphoglucosamine mutase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|B0K5X4|GLMM_THEPX Phosphoglucosamine mutase OS=Thermoanaerobacter sp. (strain X514) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|Q88BD4|ALGC_PSESM Phosphomannomutase/phosphoglucomutase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=algC PE=3 SV=1 Back     alignment and function description
>sp|Q03VW4|GLMM_LEUMM Phosphoglucosamine mutase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|Q6AD28|GLMM_LEIXX Phosphoglucosamine mutase OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|B8DWH9|GLMM_BIFA0 Phosphoglucosamine mutase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|Q8TWY8|GLMM_METKA Probable phosphoglucosamine mutase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=glmM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
255573758 620 phosphoglucomutase, putative [Ricinus co 0.784 0.293 0.745 3e-68
225424281 617 PREDICTED: phosphomannomutase/phosphoglu 0.775 0.291 0.711 3e-65
356576034 619 PREDICTED: phosphomannomutase/phosphoglu 0.775 0.290 0.682 2e-63
357475239 621 Phosphoglucosamine mutase [Medicago trun 0.767 0.286 0.673 6e-60
224101859 554 predicted protein [Populus trichocarpa] 0.504 0.211 0.837 7e-51
297838899 615 hypothetical protein ARALYDRAFT_476213 [ 0.758 0.286 0.625 8e-51
15223252 615 phosphoglucomutase-like protein [Arabido 0.758 0.286 0.614 2e-50
449522169 575 PREDICTED: phosphomannomutase/phosphoglu 0.5 0.201 0.735 1e-43
449466867 616 PREDICTED: phosphomannomutase/phosphoglu 0.5 0.188 0.735 1e-43
414884874 618 TPA: hypothetical protein ZEAMMB73_59454 0.512 0.192 0.747 1e-43
>gi|255573758|ref|XP_002527800.1| phosphoglucomutase, putative [Ricinus communis] gi|223532835|gb|EEF34610.1| phosphoglucomutase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 138/185 (74%), Positives = 152/185 (82%), Gaps = 3/185 (1%)

Query: 1   MASTTTPSISLQSNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSI-KFTHVKSSVTDKY 59
           MA T T SISLQ+N   TSF S P     KPFQ   +K  F   ++ K T +KSS T KY
Sbjct: 1   MAHTATSSISLQNNVPNTSFKSPPSLPT-KPFQ-NNIKFSFPPLTLTKVTRIKSSRTTKY 58

Query: 60  NEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENER 119
           NEV+VDEEMD++RRLQNGSDVRGVALEGEKGRTVDLTP AVEAIAESFGEWVI  LE E+
Sbjct: 59  NEVIVDEEMDKVRRLQNGSDVRGVALEGEKGRTVDLTPPAVEAIAESFGEWVINGLEKEK 118

Query: 120 GRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYD 179
           GR VEDV+VSLGKDPRV+G SLSVAVFAGL+RAGC+VFDMGLATTPACFMSTLL PFAYD
Sbjct: 119 GRVVEDVRVSLGKDPRVTGASLSVAVFAGLSRAGCMVFDMGLATTPACFMSTLLHPFAYD 178

Query: 180 ASIMV 184
           ASIM+
Sbjct: 179 ASIMM 183

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424281|ref|XP_002280911.1| PREDICTED: phosphomannomutase/phosphoglucomutase [Vitis vinifera] gi|297737677|emb|CBI26878.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356576034|ref|XP_003556140.1| PREDICTED: phosphomannomutase/phosphoglucomutase-like [Glycine max] Back     alignment and taxonomy information
>gi|357475239|ref|XP_003607905.1| Phosphoglucosamine mutase [Medicago truncatula] gi|355508960|gb|AES90102.1| Phosphoglucosamine mutase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224101859|ref|XP_002312448.1| predicted protein [Populus trichocarpa] gi|222852268|gb|EEE89815.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297838899|ref|XP_002887331.1| hypothetical protein ARALYDRAFT_476213 [Arabidopsis lyrata subsp. lyrata] gi|297333172|gb|EFH63590.1| hypothetical protein ARALYDRAFT_476213 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15223252|ref|NP_177239.1| phosphoglucomutase-like protein [Arabidopsis thaliana] gi|5902394|gb|AAD55496.1|AC008148_6 Putative phosphoglucomutase [Arabidopsis thaliana] gi|20260528|gb|AAM13162.1| putative phosphoglucomutase [Arabidopsis thaliana] gi|30725426|gb|AAP37735.1| At1g70820 [Arabidopsis thaliana] gi|332196999|gb|AEE35120.1| phosphoglucomutase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449522169|ref|XP_004168100.1| PREDICTED: phosphomannomutase/phosphoglucomutase-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449466867|ref|XP_004151147.1| PREDICTED: phosphomannomutase/phosphoglucomutase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|414884874|tpg|DAA60888.1| TPA: hypothetical protein ZEAMMB73_594547 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
TAIR|locus:2014025 615 AT1G70820 "AT1G70820" [Arabido 0.754 0.284 0.622 4.1e-49
UNIPROTKB|Q69TT2 625 OSJNBa0026P23.2-1 "Os06g047620 0.525 0.195 0.699 1.7e-39
UNIPROTKB|Q7XHZ2 543 P0475E07.126 "Putative phospho 0.418 0.178 0.44 1e-14
UNIPROTKB|A8J352 503 CHLREDRAFT_119219 "Predicted p 0.400 0.184 0.485 1.5e-14
UNIPROTKB|Q603M2 463 MCA2782 "Phosphoglucomutase/ph 0.452 0.226 0.325 8.8e-05
UNIPROTKB|Q4K3S1 465 algC "Phosphomannomutase/phosp 0.452 0.225 0.280 0.00012
UNIPROTKB|A6VEC9 868 algC "Phosphomannomutase AlgC" 0.469 0.125 0.279 0.00078
UNIPROTKB|Q88BD4 465 algC "Phosphomannomutase/phosp 0.465 0.232 0.270 0.00097
TAIR|locus:2014025 AT1G70820 "AT1G70820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 117/188 (62%), Positives = 136/188 (72%)

Query:     1 MASTTTPSISLQSNS-SRTSFLSS-PGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDK 58
             MAST+T S+       S+T+  SS PG    + F    L     S S+K   ++SS   K
Sbjct:     1 MASTSTSSLMASKTVISKTALFSSLPGI-VSRSF----LTFAPASPSVKPLRIRSSNVTK 55

Query:    59 YNEVV--VDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLE 116
             ++EV   +DE+MD+IRRLQNGSDVRGVALEGEKGRTVDLTP+AVEAIAESFGEWV  +  
Sbjct:    56 FDEVTNSLDEDMDQIRRLQNGSDVRGVALEGEKGRTVDLTPAAVEAIAESFGEWVAATES 115

Query:   117 NERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPF 176
             N  G     +K+SLG+DPRVSG  LS AVFAGLARAGCL FDMGLATTPACFMSTLL PF
Sbjct:   116 NGNGV----IKISLGRDPRVSGGKLSTAVFAGLARAGCLAFDMGLATTPACFMSTLLSPF 171

Query:   177 AYDASIMV 184
              YDASIM+
Sbjct:   172 EYDASIMM 179
GO:0004610 "phosphoacetylglucosamine mutase activity" evidence=IBA
GO:0005829 "cytosol" evidence=IBA
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0006048 "UDP-N-acetylglucosamine biosynthetic process" evidence=IBA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016868 "intramolecular transferase activity, phosphotransferases" evidence=IEA;ISS
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0042631 "cellular response to water deprivation" evidence=RCA
UNIPROTKB|Q69TT2 OSJNBa0026P23.2-1 "Os06g0476200 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XHZ2 P0475E07.126 "Putative phosphoglucomutase, chloroplast" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8J352 CHLREDRAFT_119219 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|Q603M2 MCA2782 "Phosphoglucomutase/phosphomannomutase family protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K3S1 algC "Phosphomannomutase/phosphoglucomutase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|A6VEC9 algC "Phosphomannomutase AlgC" [Pseudomonas aeruginosa PA7 (taxid:381754)] Back     alignment and assigned GO terms
UNIPROTKB|Q88BD4 algC "Phosphomannomutase/phosphoglucomutase" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
PLN02371 583 PLN02371, PLN02371, phosphoglucosamine mutase fami 2e-67
cd03089 443 cd03089, PMM_PGM, The phosphomannomutase/phosphogl 5e-24
pfam02878138 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphoma 2e-17
TIGR03990 443 TIGR03990, Arch_GlmM, phosphoglucosamine mutase 2e-15
COG1109 464 COG1109, {ManB}, Phosphomannomutase [Carbohydrate 2e-12
cd03087 439 cd03087, PGM_like1, This archaeal PGM-like (phosph 3e-09
PRK14318 448 PRK14318, glmM, phosphoglucosamine mutase; Provisi 4e-09
cd05802 434 cd05802, GlmM, GlmM is a bacterial phosphoglucosam 2e-08
cd05803 445 cd05803, PGM_like4, This PGM-like (phosphoglucomut 3e-08
TIGR01455 443 TIGR01455, glmM, phosphoglucosamine mutase 7e-08
PRK14316 448 PRK14316, glmM, phosphoglucosamine mutase; Provisi 2e-05
PLN02895 562 PLN02895, PLN02895, phosphoacetylglucosamine mutas 3e-05
cd03086 513 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also k 5e-05
PRK14322 429 PRK14322, glmM, phosphoglucosamine mutase; Provisi 5e-05
PRK14323 440 PRK14323, glmM, phosphoglucosamine mutase; Provisi 1e-04
PRK14317 465 PRK14317, glmM, phosphoglucosamine mutase; Provisi 2e-04
PRK14321 449 PRK14321, glmM, phosphoglucosamine mutase; Provisi 2e-04
PRK14319 430 PRK14319, glmM, phosphoglucosamine mutase; Provisi 7e-04
cd03088 459 cd03088, ManB, ManB is a bacterial phosphomannomut 0.001
PRK09542 445 PRK09542, manB, phosphomannomutase/phosphoglucomut 0.002
PRK14320 443 PRK14320, glmM, phosphoglucosamine mutase; Provisi 0.004
>gnl|CDD|215211 PLN02371, PLN02371, phosphoglucosamine mutase family protein Back     alignment and domain information 
 Score =  217 bits (554), Expect = 2e-67
 Identities = 81/185 (43%), Positives = 107/185 (57%), Gaps = 14/185 (7%)

Query: 3   STTTPSISLQSNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSIKFT---HVKSSVTDKY 59
           S+  P++      + +  LS+         Q      P  S S+K T      ++     
Sbjct: 1   SSLAPTVPSDLLPATSGKLSTS------LSQSVTAPAPS-SPSLKLTRARTGTAAAASSS 53

Query: 60  NEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENER 119
            E  V +  D IR+LQNGSD+RGVA+EG +G  V LTP AVEAI  +F EW+   LE ++
Sbjct: 54  TESPVVD-KDDIRKLQNGSDIRGVAVEGVEGEPVTLTPPAVEAIGAAFAEWL---LEKKK 109

Query: 120 GRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYD 179
                +++VS+G+DPR+SGP L+ AVFAGLA AG  V DMGLATTPA FMSTL     YD
Sbjct: 110 ADGSGELRVSVGRDPRISGPRLADAVFAGLASAGLDVVDMGLATTPAMFMSTLTEREDYD 169

Query: 180 ASIMV 184
           A IM+
Sbjct: 170 APIMI 174

Length = 583
>gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e Back     alignment and domain information
>gnl|CDD|217263 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Back     alignment and domain information
>gnl|CDD|234431 TIGR03990, Arch_GlmM, phosphoglucosamine mutase Back     alignment and domain information
>gnl|CDD|224034 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates Back     alignment and domain information
>gnl|CDD|237672 PRK14318, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|100095 cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily Back     alignment and domain information
>gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes Back     alignment and domain information
>gnl|CDD|130522 TIGR01455, glmM, phosphoglucosamine mutase Back     alignment and domain information
>gnl|CDD|237670 PRK14316, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|215485 PLN02895, PLN02895, phosphoacetylglucosamine mutase Back     alignment and domain information
>gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway Back     alignment and domain information
>gnl|CDD|184619 PRK14322, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|184620 PRK14323, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|237671 PRK14317, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|172797 PRK14321, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|172795 PRK14319, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate Back     alignment and domain information
>gnl|CDD|236557 PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed Back     alignment and domain information
>gnl|CDD|172796 PRK14320, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 232
PF02878137 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, 100.0
PLN02371 583 phosphoglucosamine mutase family protein 100.0
PRK14323 440 glmM phosphoglucosamine mutase; Provisional 99.97
PRK14324 446 glmM phosphoglucosamine mutase; Provisional 99.97
cd03089 443 PMM_PGM The phosphomannomutase/phosphoglucomutase 99.97
cd05802 434 GlmM GlmM is a bacterial phosphoglucosamine mutase 99.97
PRK14317 465 glmM phosphoglucosamine mutase; Provisional 99.97
PRK14318 448 glmM phosphoglucosamine mutase; Provisional 99.97
PRK14316 448 glmM phosphoglucosamine mutase; Provisional 99.97
cd05805 441 MPG1_transferase GTP-mannose-1-phosphate guanyltra 99.97
PRK14314 450 glmM phosphoglucosamine mutase; Provisional 99.97
PRK14315 448 glmM phosphoglucosamine mutase; Provisional 99.97
PRK15414 456 phosphomannomutase CpsG; Provisional 99.97
cd05803 445 PGM_like4 This PGM-like (phosphoglucomutase-like) 99.97
COG1109 464 {ManB} Phosphomannomutase [Carbohydrate transport 99.97
PRK14320 443 glmM phosphoglucosamine mutase; Provisional 99.97
PRK10887 443 glmM phosphoglucosamine mutase; Provisional 99.97
PRK14321 449 glmM phosphoglucosamine mutase; Provisional 99.97
TIGR01455 443 glmM phosphoglucosamine mutase. This model describ 99.97
PRK14322 429 glmM phosphoglucosamine mutase; Provisional 99.97
cd03087 439 PGM_like1 This archaeal PGM-like (phosphoglucomuta 99.97
cd05800 461 PGM_like2 This PGM-like (phosphoglucomutase-like) 99.96
PRK14319 430 glmM phosphoglucosamine mutase; Provisional 99.96
PRK09542 445 manB phosphomannomutase/phosphoglucomutase; Review 99.96
PLN02307 579 phosphoglucomutase 99.96
TIGR01132 543 pgm phosphoglucomutase, alpha-D-glucose phosphate- 99.95
cd05799 487 PGM2 This CD includes PGM2 (phosphoglucomutase 2) 99.95
cd03088 459 ManB ManB is a bacterial phosphomannomutase (PMM) 99.95
PRK07564 543 phosphoglucomutase; Validated 99.95
PTZ00150 584 phosphoglucomutase-2-like protein; Provisional 99.95
cd03085 548 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bid 99.95
cd05801 522 PGM_like3 This bacterial PGM-like (phosphoglucomut 99.94
KOG1220 607 consensus Phosphoglucomutase/phosphomannomutase [C 99.92
COG0033 524 Pgm Phosphoglucomutase [Carbohydrate transport and 99.68
cd03084 355 phosphohexomutase The alpha-D-phosphohexomutase su 99.4
KOG0625 558 consensus Phosphoglucomutase [Carbohydrate transpo 99.24
cd03086 513 PGM3 PGM3 (phosphoglucomutase 3), also known as PA 98.82
PLN02895 562 phosphoacetylglucosamine mutase 98.8
PTZ00302 585 N-acetylglucosamine-phosphate mutase; Provisional 98.78
PLN02895 562 phosphoacetylglucosamine mutase 98.05
cd03086 513 PGM3 PGM3 (phosphoglucomutase 3), also known as PA 97.88
PTZ00302 585 N-acetylglucosamine-phosphate mutase; Provisional 97.87
KOG2537 539 consensus Phosphoglucomutase/phosphomannomutase [C 97.6
KOG2537 539 consensus Phosphoglucomutase/phosphomannomutase [C 95.57
TIGR01119171 lacB galactose-6-phosphate isomerase, LacB subunit 87.25
PTZ00215151 ribose 5-phosphate isomerase; Provisional 87.22
PF02502140 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: 86.94
TIGR01118141 lacA galactose-6-phosphate isomerase, LacA subunit 86.65
PRK08621142 galactose-6-phosphate isomerase subunit LacA; Revi 86.3
PRK12613141 galactose-6-phosphate isomerase subunit LacA; Prov 86.21
PRK05571148 ribose-5-phosphate isomerase B; Provisional 85.94
TIGR01120143 rpiB ribose 5-phosphate isomerase B. Involved in t 85.38
TIGR02133148 RPI_actino ribose 5-phosphate isomerase. This fami 82.77
PRK08622171 galactose-6-phosphate isomerase subunit LacB; Revi 82.76
PRK12615171 galactose-6-phosphate isomerase subunit LacB; Revi 81.4
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) [] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-34  Score=231.47  Aligned_cols=129  Identities=28%  Similarity=0.356  Sum_probs=111.6

Q ss_pred             hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 026863           72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR  151 (232)
Q Consensus        72 ~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a  151 (232)
                      +++|+++||||+++.+      +|||+++.+++.+|++++.+..        ...+|+||||+|.+|++++++++++|++
T Consensus         1 ~~~F~~~girG~~~~~------~lt~~~~~~~~~a~~~~~~~~~--------~~~~VvVg~D~R~~s~~~~~~~~~~l~~   66 (137)
T PF02878_consen    1 RVLFGTSGIRGIINVG------ELTPEFAARLAQAFASYLKEKG--------NGSRVVVGRDTRPSSPMLAKALAAGLRA   66 (137)
T ss_dssp             -CCBBTTSEEEECTHT------TBSHHHHHHHHHHHHHHHHHTT--------TSSEEEEEE-SSTTHHHHHHHHHHHHHH
T ss_pred             CCccCCCCeeEEeCCC------CCCHHHHHHHHHHHHHhhcccC--------CCCeEEEEEcccCCHHHHHHHHHHHHhh
Confidence            4689999999999842      6999999999999999998851        2478999999999999999999999999


Q ss_pred             CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEeccc-------hHHHHHHHHhhcCC
Q 026863          152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFWI-------SLYEIRYCCVTDDC  218 (232)
Q Consensus       152 ~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~~-------~~~eIe~~~~~e~~  218 (232)
                      +|++|+++|++|||+++|++.  +++++||||||||||  |++||||||+..+       .+++||+.+++++-
T Consensus        67 ~G~~V~~~g~~~tP~~~~~~~--~~~~~ggi~iTaShn--p~~~ngik~~~~~G~~~~~~~~~~I~~~~~~~~~  136 (137)
T PF02878_consen   67 NGVDVIDIGLVPTPALSFAIR--QLNADGGIMITASHN--PPGYNGIKFFDANGGPISPEEERKIEQIIEREEF  136 (137)
T ss_dssp             TTEEEEEEEEB-HHHHHHHHH--HHTESEEEEE--TTS---TTEEEEEEEETTSSB--HHHHHHHHHHHHHT-E
T ss_pred             cccccccccccCcHHhhhhcc--ccccceeeEEEecCC--CCCcceEEEEeCCCCcCCHHHHHHHHHHHHhhhc
Confidence            999999999999999999996  678999999999999  9999999999764       58999999998763

PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
>PLN02371 phosphoglucosamine mutase family protein Back     alignment and domain information
>PRK14323 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK14324 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e Back     alignment and domain information
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily Back     alignment and domain information
>PRK14317 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK14318 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK14316 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity Back     alignment and domain information
>PRK14314 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK14315 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK15414 phosphomannomutase CpsG; Provisional Back     alignment and domain information
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes Back     alignment and domain information
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14320 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK10887 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK14321 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>TIGR01455 glmM phosphoglucosamine mutase Back     alignment and domain information
>PRK14322 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates Back     alignment and domain information
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria Back     alignment and domain information
>PRK14319 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed Back     alignment and domain information
>PLN02307 phosphoglucomutase Back     alignment and domain information
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific Back     alignment and domain information
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1) Back     alignment and domain information
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate Back     alignment and domain information
>PRK07564 phosphoglucomutase; Validated Back     alignment and domain information
>PTZ00150 phosphoglucomutase-2-like protein; Provisional Back     alignment and domain information
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes Back     alignment and domain information
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily Back     alignment and domain information
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates Back     alignment and domain information
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway Back     alignment and domain information
>PLN02895 phosphoacetylglucosamine mutase Back     alignment and domain information
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional Back     alignment and domain information
>PLN02895 phosphoacetylglucosamine mutase Back     alignment and domain information
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway Back     alignment and domain information
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional Back     alignment and domain information
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit Back     alignment and domain information
>PTZ00215 ribose 5-phosphate isomerase; Provisional Back     alignment and domain information
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB) Back     alignment and domain information
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit Back     alignment and domain information
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed Back     alignment and domain information
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional Back     alignment and domain information
>PRK05571 ribose-5-phosphate isomerase B; Provisional Back     alignment and domain information
>TIGR01120 rpiB ribose 5-phosphate isomerase B Back     alignment and domain information
>TIGR02133 RPI_actino ribose 5-phosphate isomerase Back     alignment and domain information
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed Back     alignment and domain information
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
1wqa_A 455 Crystal Structure Of Pyrococcus Horikoshii Phosphom 2e-07
3bkq_X 463 Structure Of The P368g Mutant Of PmmPGM IN COMPLEX 4e-05
2fkm_X 462 Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisph 4e-05
3rsm_A 463 Crystal Structure Of S108c Mutant Of PmmPGM Length 4e-05
2h4l_X 463 Complex Of PmmPGM WITH RIBOSE 1-Phosphate Length = 4e-05
1p5d_X 463 Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM Lengt 4e-05
2fkf_A 462 PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMON 4e-05
1k2y_X 463 Crystal Structure Of Phosphomannomutase/phosphogluc 4e-05
1k35_A 463 Crystal Structure Of Phosphomannomutase/phosphogluc 9e-05
3pdk_A 469 Crystal Structure Of Phosphoglucosamine Mutase From 4e-04
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+ Length = 455 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 80  VRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139
           VRG+A E        +TP     I  +FG  + R     R +P+    V +G+D RVSG 
Sbjct: 10  VRGIANE-------KITPEFAMKIGMAFGTLLKRE---GRKKPL----VVVGRDTRVSGE 55
Query: 140 SLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIE 199
            L  A+ +GL   GC V D+G+A TPA   +T    F  D   ++   +    +N I + 
Sbjct: 56  MLKEALISGLLSVGCDVIDVGIAPTPAVQWAT--KHFNADGGAVITASHNPPEYNGIKLL 113
Query: 200 FAFWISLYEIRYCCVTDDCFSLTL-HSKWSEI 230
               + L + R   V +  F      +KW EI
Sbjct: 114 EPNGMGLKKEREAIVEELFFKEDFDRAKWYEI 145
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH ITS SUBSTRATE Length = 463 Back     alignment and structure
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate Bound Length = 462 Back     alignment and structure
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM Length = 463 Back     alignment and structure
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate Length = 463 Back     alignment and structure
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM Length = 463 Back     alignment and structure
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound Length = 462 Back     alignment and structure
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase S108a Mutant From P. Aeruginosa Length = 463 Back     alignment and structure
>pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase/phosphoglucomutase From P.aeruginosa Length = 463 Back     alignment and structure
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B. Anthracis Length = 469 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
3uw2_A 485 Phosphoglucomutase/phosphomannomutase family PROT; 5e-14
1p5d_X 463 PMM, phosphomannomutase; alpha/beta protein, phosp 2e-13
1wqa_A 455 Phospho-sugar mutase; alpha-beta protein, unphosph 6e-12
2f7l_A 455 455AA long hypothetical phospho-sugar mutase; phos 7e-10
3pdk_A 469 Phosphoglucosamine mutase; 4-domain architecture, 3e-08
1tuo_A 464 Putative phosphomannomutase; thermus thermophilus 4e-08
3i3w_A 443 Phosphoglucosamine mutase; csgid, IDP02164, isomer 9e-07
2dka_A 544 Phosphoacetylglucosamine mutase; isomerase; 1.93A 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis} Length = 485 Back     alignment and structure
 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 22/112 (19%)

Query: 79  DVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSG 138
           D+RGV  +        L      +I  +FG  V       +G       V + +D R+SG
Sbjct: 32  DIRGVIGK-------TLDADVARSIGRAFGSEVR-----AQGGD----AVVVARDGRLSG 75

Query: 139 PSLSVAVFAGLARAGCLVFDMGLATTP----ACFMSTLLPPFAY--DASIMV 184
           P L  A+  GL  AG  V D+G+  TP    A  +   L       D+ I+V
Sbjct: 76  PELVGALADGLRAAGVDVVDVGMVPTPVGYFAASVPLALSGGERRVDSCIVV 127
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X* Length = 463 Back     alignment and structure
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii} Length = 455 Back     alignment and structure
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii} Length = 455 Back     alignment and structure
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis} Length = 469 Back     alignment and structure
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus} Length = 464 Back     alignment and structure
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp} Length = 443 Back     alignment and structure
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A* Length = 544 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query232
3i3w_A 443 Phosphoglucosamine mutase; csgid, IDP02164, isomer 100.0
3pdk_A 469 Phosphoglucosamine mutase; 4-domain architecture, 99.98
2f7l_A 455 455AA long hypothetical phospho-sugar mutase; phos 99.98
1wqa_A 455 Phospho-sugar mutase; alpha-beta protein, unphosph 99.97
3uw2_A 485 Phosphoglucomutase/phosphomannomutase family PROT; 99.97
1p5d_X 463 PMM, phosphomannomutase; alpha/beta protein, phosp 99.97
1tuo_A 464 Putative phosphomannomutase; thermus thermophilus 99.97
4hjh_A 481 Phosphomannomutase; structural genomics, niaid, na 99.96
2z0f_A 524 Putative phosphoglucomutase; isomerase, magnesium, 99.96
3na5_A 570 Phosphoglucomutase; isomerase, metal binding; HET: 99.96
1kfi_A 572 Phosphoglucomutase 1; parafusin, phosphoprotein PP 99.95
3pmg_A 561 Alpha-D-glucose-1,6-bisphosphate; phosphoglucomuta 99.94
2dka_A 544 Phosphoacetylglucosamine mutase; isomerase; 1.93A 99.3
2dka_A 544 Phosphoacetylglucosamine mutase; isomerase; 1.93A 97.93
1o1x_A155 Ribose-5-phosphate isomerase RPIB; structural geno 90.81
2vvr_A149 Ribose-5-phosphate isomerase B; RPIB, carbohydrate 89.66
2vvp_A162 Ribose-5-phosphate isomerase B; RPIB, RV2465C, RAR 87.26
3he8_A149 Ribose-5-phosphate isomerase; CTRPI B, isomerizati 86.77
3ph3_A169 Ribose-5-phosphate isomerase; alpha-beta-alpha san 85.44
3s5p_A166 Ribose 5-phosphate isomerase; structural genomics, 85.18
4em8_A148 Ribose 5-phosphate isomerase B; ssgcid, seattle st 82.41
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp} Back     alignment and structure
Probab=100.00  E-value=7e-33  Score=261.30  Aligned_cols=125  Identities=21%  Similarity=0.256  Sum_probs=113.7

Q ss_pred             hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCC-eEEEEecCCCChHHHHHHHHHHHH
Q 026863           72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDV-KVSLGKDPRVSGPSLSVAVFAGLA  150 (232)
Q Consensus        72 ~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~-~VvVGrD~R~SS~~La~Ala~gL~  150 (232)
                      +++||++||||++++|      +|||+++.++|+|||+++.++     +    .. +|+||||+|.+|++|++++++||+
T Consensus         2 ~~~FGt~GiRG~~~~g------~lt~~~v~~~g~a~~~~l~~~-----~----~~~~VvVG~D~R~ss~~l~~a~~~gl~   66 (443)
T 3i3w_A            2 AKYFGTDGIRGEVANS------TITVEFTQKLGNAVGSLINQK-----N----YPKFVIVGQDTRSSGGFLKFALVSGLN   66 (443)
T ss_dssp             -CCCCSSSSEEEBSSS------SBSHHHHHHHHHHHHHHHHHT-----T----CCSEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred             CcccCCCCeeEEeCCC------CCCHHHHHHHHHHHHHHHHhc-----C----CCCeEEEEeCCCcCHHHHHHHHHHHHH
Confidence            5799999999999854      799999999999999999764     1    24 899999999999999999999999


Q ss_pred             HCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEecc-------chHHHHHHHHhh
Q 026863          151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFW-------ISLYEIRYCCVT  215 (232)
Q Consensus       151 a~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~-------~~~~eIe~~~~~  215 (232)
                      ++|++|+++|++|||+++|++.  +++++||||||||||  |++||||||+..       +.+++||+.+..
T Consensus        67 s~G~~V~~~g~~pTP~~~~av~--~~~a~~GImITASHN--P~~~NGiK~~~~~G~~l~~~~~~~Ie~~~~~  134 (443)
T 3i3w_A           67 AAGIDVLDLGVVPTPVVAFMTV--KHRAAAGFVITASHN--KFTDNGIKLFSSNGFKLDDALEEEVEDMIDG  134 (443)
T ss_dssp             HHTCEEEEEEECCHHHHHHHHH--HTTCSEEEEECCTTS--CTTEEEEEEEETTSCBCCHHHHHHHHHHHTS
T ss_pred             HCCCeEEEeCCCCHHHHHHHHH--hcCCCeEEEEEECCC--CchhCeEEEEcCCCCcCCHHHHHHHHHHHhc
Confidence            9999999999999999999996  688999999999999  999999999865       357899999865
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis} Back     alignment and structure
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis} Back     alignment and structure
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X* Back     alignment and structure
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus} Back     alignment and structure
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV} Back     alignment and structure
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus} Back     alignment and structure
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A* Back     alignment and structure
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A Back     alignment and structure
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A* Back     alignment and structure
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A* Back     alignment and structure
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A* Back     alignment and structure
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1 Back     alignment and structure
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A Back     alignment and structure
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A Back     alignment and structure
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A* Back     alignment and structure
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A* Back     alignment and structure
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia} Back     alignment and structure
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query232
d1p5dx1146 Phosphomannomutase/phosphoglucomutase {Pseudomonas 100.0
d3pmga1190 Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) 99.96
d1kfia1203 Exocytosis-sensitive phosphoprotein, pp63/parafusi 99.94
d1nn4a_159 Alternate ribose 5-phosphate isomerase B, RpiB {Es 88.74
d2vvpa1156 Alternate ribose 5-phosphate isomerase B, RpiB {My 82.52
d3bula2156 Methionine synthase, C-terminal domain {Escherichi 80.8
d1ccwa_137 Glutamate mutase, small subunit {Clostridium cochl 80.55
>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphoglucomutase, first 3 domains
superfamily: Phosphoglucomutase, first 3 domains
family: Phosphoglucomutase, first 3 domains
domain: Phosphomannomutase/phosphoglucomutase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=6.4e-37  Score=248.95  Aligned_cols=127  Identities=22%  Similarity=0.324  Sum_probs=116.2

Q ss_pred             hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 026863           72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR  151 (232)
Q Consensus        72 ~~lFg~sGIRGi~~~g~~~~~~~LTp~~v~~lg~A~g~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~La~Ala~gL~a  151 (232)
                      +.+|+++||||++++       +||++++.++|+|||+++..+.         .++|+||||+|.+|++|+++++++|++
T Consensus         3 ~sif~~~dIRGi~~~-------~lt~~~~~~ig~a~~~~~~~~~---------~~~VvIg~D~R~ss~~~~~~~~~gl~~   66 (146)
T d1p5dx1           3 ASIFRAYDIRGVVGD-------TLTAETAYWIGRAIGSESLARG---------EPCVAVGRDGRLSGPELVKQLIQGLVD   66 (146)
T ss_dssp             GGGBCSSSEEEEBTT-------TBCHHHHHHHHHHHHHHHHHTT---------CCEEEEEECSCTTHHHHHHHHHHHHHT
T ss_pred             hhhccccCEeeeCCC-------CcCHHHHHHHHHHHHHHHHhcC---------CCEEEEEECCccchhhhhhhhheeecc
Confidence            468999999999986       8999999999999999988752         368999999999999999999999999


Q ss_pred             CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEccCCCCCCCCCCcEEEecc------chHHHHHHHHhhcCC
Q 026863          152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMVGYMYKVNNFNRIAIEFAFW------ISLYEIRYCCVTDDC  218 (232)
Q Consensus       152 ~Gv~VidlG~~pTP~l~yav~~~~~~a~gGImITASHN~~P~~~NGiK~~~~------~~~~eIe~~~~~e~~  218 (232)
                      +|++|+++|++|||+++|++.  ++++++|||||||||  |++||||||+..      +.+++|++.+..++.
T Consensus        67 ~G~~V~~~g~~pTP~l~~~~~--~~~~~~GI~ITASHN--P~~~NGiK~~~~g~~~~~~~~~~i~~~~~~~~~  135 (146)
T d1p5dx1          67 CGCQVSDVGMVPTPVLYYAAN--VLEGKSGVMLTGSHN--PPDYNGFKIVVAGETLANEQIQALRERIEKNDL  135 (146)
T ss_dssp             BTCEEEEEEECCHHHHHHHHH--HSSCSEEEEECCTTS--CTTEEEEEEEETTEECCTHHHHHHHHHHHHTCC
T ss_pred             CceEEEeccccccHHHHHHHH--hhccCceeEEeecCC--ccccceEEEecCCCccChHHHHHHHHHHhcCCc
Confidence            999999999999999999996  688999999999999  999999999855      357888898888764
>d3pmga1 c.84.1.1 (A:1-190) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1kfia1 c.84.1.1 (A:3-205) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]} Back     information, alignment and structure
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Back     information, alignment and structure