Citrus Sinensis ID: 026882

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-

MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEEIWGATFKVEGPAVLAATE

cEEEEcccccccHHHHHHcccccccccccHHHHHHHHHccccccEEEEEcccEEEEEccccccccccccccccccEEEEEcHHHccHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEccccEEEEEEccEEEEEccccEEEEEccHHHHHHHcccccccccccEEEEcccccEEEEEcccccccccccccccccccEEEEEccHHHcccc

ccEEEccccccccHHHcccccccccccccHHHHHHHHHHcccccEEEEEcccEEEEEcccccccccccEEEEcccEEEEEcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccEEEEEEEccccEEEEEEEEEEEEEccccEEEEccHHHHHHHHccccccccccccEEEccccccEEccccccccEEccccccHcccEEEEEccccEccccc

mlgvfssaivsppeelvaagsrtpspkttsTALVDRFLQTnssavsvqvGDNVTLaythqnesplrqrsfAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKAlrdrapyppnhvvghlSGYFAFIVYDKSTSTLFVASVPlywgitadghvafaddadllkgacgkslasfpqgcffstavgglrsfenpknkitavpaaeeeiwgatfkvegpavlaate

mlgvfssaivsppeelvaagsrtpspkTTSTALVDRFLQTNSSAVSVQVGDNVTLAYthqnesplrqrSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEEIWGATFKVEGPAVLAATE

*********************************VDRFLQTNSSAVSVQVGDNVTLAYTHQN**PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEEIWGATFKVEGPA******

MLGVFSSAIVSPP************************LQTNSSAVSVQVGDNVTLAYTHQ*********FAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEEIWGATFKVE**AV*****

MLGVFSSAIVSPPEE*************TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEEIWGATFKVEGPAVLAATE

MLG*FSSAIVSPPEELVA********KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEEIWGATFKVEGPA******

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		231	2.2.26 [Sep-21-2011]
P24805		149	Stem-specific protein TSJ	N/A	no	0.632	0.979	0.436	3e-30
Q10MX3		604	Asparagine synthetase [gl	no	no	0.363	0.139	0.366	8e-06
Q43011		591	Asparagine synthetase [gl	no	no	0.363	0.142	0.333	9e-06
Q9LV77		578	Asparagine synthetase [gl	no	no	0.363	0.145	0.344	9e-06
P49094		586	Asparagine synthetase [gl	N/A	no	0.363	0.143	0.322	3e-05
Q9LFU1		578	Asparagine synthetase [gl	no	no	0.363	0.145	0.344	3e-05
Q54MB4		557	Probable asparagine synth	yes	no	0.324	0.134	0.333	0.0002
P49078		584	Asparagine synthetase [gl	no	no	0.380	0.150	0.297	0.0007

>sp\|P24805\|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1	Back alignment and function desciption

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 3/149 (2%)

Query: 1   MLGVFSSAIVSPPEELV--AAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
           ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFS 59

Query: 59  HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP 118
           H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAP
Sbjct: 60  HGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAP 119

Query: 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147
           YPP+ V+  L G FAFI++D   STLF+A
Sbjct: 120 YPPDQVIKELEGKFAFILFDSKASTLFLA 148

Nicotiana tabacum (taxid: 4097)

>sp\|Q10MX3\|ASNS1_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa subsp. japonica GN=Os03g0291500 PE=2 SV=1	Back alignment and function description

>sp\|Q43011\|ASNS2_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Oryza sativa subsp. japonica GN=Os06g0265000 PE=2 SV=3	Back alignment and function description

>sp\|Q9LV77\|ASNS2_ARATH Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Arabidopsis thaliana GN=ASN2 PE=2 SV=1	Back alignment and function description

>sp\|P49094\|ASNS_MAIZE Asparagine synthetase [glutamine-hydrolyzing] OS=Zea mays GN=ASN1 PE=2 SV=2	Back alignment and function description

>sp\|Q9LFU1\|ASNS3_ARATH Asparagine synthetase [glutamine-hydrolyzing] 3 OS=Arabidopsis thaliana GN=ASN3 PE=2 SV=1	Back alignment and function description

>sp\|Q54MB4\|ASNS_DICDI Probable asparagine synthetase [glutamine-hydrolyzing] OS=Dictyostelium discoideum GN=asns PE=1 SV=1	Back alignment and function description

>sp\|P49078\|ASNS1_ARATH Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Arabidopsis thaliana GN=ASN1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		231
224100337		236	predicted protein [Populus trichocarpa]	1.0	0.978	0.860	1e-112
34541994		236	Al-induced protein [Gossypium hirsutum]	1.0	0.978	0.847	1e-112
388519241		236	unknown [Medicago truncatula]	1.0	0.978	0.834	1e-111
56606534		236	aluminum-induced protein [Codonopsis lan	1.0	0.978	0.834	1e-111
255552269		236	Stem-specific protein TSJT1, putative [R	1.0	0.978	0.847	1e-111
225432548		236	PREDICTED: stem-specific protein TSJT1 [	1.0	0.978	0.851	1e-111
388513727		236	unknown [Lotus japonicus]	1.0	0.978	0.826	1e-109
13958130		236	aluminium induced protein [Avicennia mar	1.0	0.978	0.817	1e-109
238800460		236	aluminum-induced protein [Cucumis hystri	1.0	0.978	0.826	1e-109
2970051		237	ARG10 [Vigna radiata]	1.0	0.974	0.830	1e-109

>gi\|224100337\|ref\|XP_002311836.1\| predicted protein [Populus trichocarpa] gi\|118485817\|gb\|ABK94756.1\| unknown [Populus trichocarpa] gi\|222851656\|gb\|EEE89203.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/236 (86%), Positives = 216/236 (91%), Gaps = 5/236 (2%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAGSRTPSPK ++ ALV RF+ TNSSAVSV+VGD+  +A+TH 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGSRTPSPKISADALVKRFVDTNSSAVSVRVGDDSQVAFTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NES L  RSFAVKDEI+CLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  NESMLLPRSFAVKDEIYCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS-----VPLYWGITADGHVAFADDADLLKGACG 175
           PNHVVGHLSG FAFIV+DKSTSTLFVAS     VPLYWGITADG+VAFAD+ DLLKGACG
Sbjct: 121 PNHVVGHLSGSFAFIVFDKSTSTLFVASDQFGKVPLYWGITADGYVAFADNIDLLKGACG 180

Query: 176 KSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEEIWGATFKVEGPAVLAATE 231
           KSLASFPQGCFFST +G LRSFENPKNKITAVPA EEEIWGATFKVEGPAVLAATE
Sbjct: 181 KSLASFPQGCFFSTTIGELRSFENPKNKITAVPAKEEEIWGATFKVEGPAVLAATE 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|34541994\|gb\|AAQ74889.1\| Al-induced protein [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|388519241\|gb\|AFK47682.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|56606534\|gb\|AAW02789.1\| aluminum-induced protein [Codonopsis lanceolata]	Back alignment and taxonomy information

>gi\|255552269\|ref\|XP_002517179.1\| Stem-specific protein TSJT1, putative [Ricinus communis] gi\|223543814\|gb\|EEF45342.1\| Stem-specific protein TSJT1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225432548\|ref\|XP_002280658.1\| PREDICTED: stem-specific protein TSJT1 [Vitis vinifera] gi\|297736991\|emb\|CBI26192.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|388513727\|gb\|AFK44925.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|13958130\|gb\|AAK50814.1\|AF363286_1 aluminium induced protein [Avicennia marina]	Back alignment and taxonomy information

>gi\|238800460\|gb\|ACR56069.1\| aluminum-induced protein [Cucumis hystrix]	Back alignment and taxonomy information

>gi\|2970051\|dbj\|BAA25187.1\| ARG10 [Vigna radiata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		231
TAIR\|locus:2182137		234	AILP1 "AT5G19140" [Arabidopsis	0.987	0.974	0.819	6.4e-99
TAIR\|locus:2170822		251	AT5G43830 "AT5G43830" [Arabido	0.956	0.880	0.445	3.7e-48
TAIR\|locus:2084598		248	AT3G22850 "AT3G22850" [Arabido	0.943	0.879	0.443	1.8e-46
TAIR\|locus:2123994		250	AT4G27450 "AT4G27450" [Arabido	0.956	0.884	0.456	2.3e-46
TAIR\|locus:2090116		253	AT3G15450 "AT3G15450" [Arabido	0.952	0.869	0.443	2.7e-45

TAIR\|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 191/233 (81%), Positives = 208/233 (89%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
             MLG+FS AIVSPPEELVAAGSRTPSPKTT + LV+RF++ N SAVSVQVGD V LAY+H 
Sbjct:     1 MLGIFSGAIVSPPEELVAAGSRTPSPKTTGSTLVNRFVEKNPSAVSVQVGDYVQLAYSHH 60

Query:    61 NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
             NESPLR RSF  KDEIFCLF+G+LDNLGSL+QQYGLAK+ANEV+LVIEAYK LRDRAPYP
Sbjct:    61 NESPLRPRSFGAKDEIFCLFQGSLDNLGSLKQQYGLAKNANEVLLVIEAYKTLRDRAPYP 120

Query:   121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS-----VPLYWGITADGHVAFADDADLLKGACG 175
              NHVV HLSG FAF+V+DKSTSTLFVAS     VPLYWGITADG+VAFADD DLLKGACG
Sbjct:   121 ANHVVAHLSGDFAFVVFDKSTSTLFVASDQVGKVPLYWGITADGYVAFADDVDLLKGACG 180

Query:   176 KSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEEIWGATFKVEGPAVLA 228
             KSLASFPQGC++STA+GGLRSFENPKNKITAVPA E EIWGATFKVEG  VLA
Sbjct:   181 KSLASFPQGCYYSTALGGLRSFENPKNKITAVPANEGEIWGATFKVEGATVLA 233

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010044 "response to aluminum ion" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR\|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		231
pfam12481		228	pfam12481, DUF3700, Aluminium induced protein	1e-132
cd01910		224	cd01910, Wali7, This domain is present in Wali7, a	1e-130
cd00352		220	cd00352, Gn_AT_II, Glutamine amidotransferases cla	2e-15
PLN02549		578	PLN02549, PLN02549, asparagine synthase (glutamine	4e-11
PTZ00077		586	PTZ00077, PTZ00077, asparagine synthetase-like pro	2e-10
PRK09431		554	PRK09431, asnB, asparagine synthetase B; Provision	3e-10
cd00712		220	cd00712, AsnB, Glutamine amidotransferases class-I	9e-07
pfam13522		130	pfam13522, GATase_6, Glutamine amidotransferase do	6e-06
pfam13537		120	pfam13537, GATase_7, Glutamine amidotransferase do	2e-05
TIGR03108		628	TIGR03108, eps_aminotran_1, exosortase A system-as	2e-04
COG0367		542	COG0367, AsnB, Asparagine synthase (glutamine-hydr	0.001

>gnl\|CDD\|221596 pfam12481, DUF3700, Aluminium induced protein	Back alignment and domain information

 Score =  370 bits (952), Expect = e-132
 Identities = 131/229 (57%), Positives = 160/229 (69%), Gaps = 10/229 (4%)

Query: 2   LGVFSSAIVSPPEELVAAGSRTPSP--KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH 59
           L VF  ++  PPEEL +  SR PS   K     L+  F+  N +AVSV  GD+  LAY+H
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFVSANPNAVSVNFGDSAFLAYSH 60

Query: 60  QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPY 119
             +SPL  R FAV D+IFCLF+G L+NL SLRQQYGL+K+ANE +LVIEAY+ LRDR PY
Sbjct: 61  SKQSPLLPRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRGPY 120

Query: 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVA-----SVPLYWGITADGHVAFADDADLLKGAC 174
           P + VV  L G FAF++YD  T T+FVA     SVPL+WGI ADG + F+DD +LLK  C
Sbjct: 121 PADQVVKDLEGSFAFVLYDSKTGTVFVALDADGSVPLFWGIAADGSLVFSDDLELLKAGC 180

Query: 175 GKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEE--IWGATFKV 221
           GKS A FPQGCFFS+  GGLRSFE+P NK+ AVP  + E  + GATFKV
Sbjct: 181 GKSFAPFPQGCFFSSE-GGLRSFEHPMNKLKAVPRVDSEGQMCGATFKV 228

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228

>gnl\|CDD\|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum	Back alignment and domain information

>gnl\|CDD\|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase)	Back alignment and domain information

>gnl\|CDD\|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>gnl\|CDD\|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|236513 PRK09431, asnB, asparagine synthetase B; Provisional	Back alignment and domain information

>gnl\|CDD\|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type	Back alignment and domain information

>gnl\|CDD\|222195 pfam13522, GATase_6, Glutamine amidotransferase domain	Back alignment and domain information

>gnl\|CDD\|222208 pfam13537, GATase_7, Glutamine amidotransferase domain	Back alignment and domain information

>gnl\|CDD\|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1	Back alignment and domain information

>gnl\|CDD\|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		231
cd01910		224	Wali7 This domain is present in Wali7, a protein o	100.0
PF12481		228	DUF3700: Aluminium induced protein ; InterPro: IPR	100.0
PLN02549		578	asparagine synthase (glutamine-hydrolyzing)	100.0
PRK09431		554	asnB asparagine synthetase B; Provisional	100.0
PTZ00077		586	asparagine synthetase-like protein; Provisional	100.0
COG0367		542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	100.0
cd00712		220	AsnB Glutamine amidotransferases class-II (GATase)	100.0
TIGR01536		467	asn_synth_AEB asparagine synthase (glutamine-hydro	100.0
TIGR03104		589	trio_amidotrans asparagine synthase family amidotr	100.0
PRK08525		445	amidophosphoribosyltransferase; Provisional	100.0
PRK07631		475	amidophosphoribosyltransferase; Provisional	100.0
TIGR03108		628	eps_aminotran_1 exosortase 1 system-associated ami	100.0
cd00714		215	GFAT Glutamine amidotransferases class-II (Gn-AT)_	100.0
PRK06388		474	amidophosphoribosyltransferase; Provisional	100.0
PRK07349		500	amidophosphoribosyltransferase; Provisional	100.0
PRK07272		484	amidophosphoribosyltransferase; Provisional	99.98
PRK08341		442	amidophosphoribosyltransferase; Provisional	99.98
PRK06781		471	amidophosphoribosyltransferase; Provisional	99.98
PRK07847		510	amidophosphoribosyltransferase; Provisional	99.98
KOG0571		543	consensus Asparagine synthase (glutamine-hydrolyzi	99.97
PRK09123		479	amidophosphoribosyltransferase; Provisional	99.97
PRK05793		469	amidophosphoribosyltransferase; Provisional	99.97
cd00715		252	GPATase_N Glutamine amidotransferases class-II (GN	99.97
PLN02440		479	amidophosphoribosyltransferase	99.97
TIGR01134		442	purF amidophosphoribosyltransferase. Alternate nam	99.97
PRK00331		604	glucosamine--fructose-6-phosphate aminotransferase	99.97
TIGR01135		607	glmS glucosamine--fructose-6-phosphate aminotransf	99.97
PRK09246		501	amidophosphoribosyltransferase; Provisional	99.97
cd03766		181	Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn	99.96
PTZ00295		640	glucosamine-fructose-6-phosphate aminotransferase;	99.96
cd01907		249	GlxB Glutamine amidotransferases class-II (Gn-AT)_	99.95
cd01909		199	betaLS_CarA_N Glutamine amidotransferases class-II	99.95
cd00352		220	Gn_AT_II Glutamine amidotransferases class-II (GAT	99.95
COG0034		470	PurF Glutamine phosphoribosylpyrophosphate amidotr	99.93
PLN02981		680	glucosamine:fructose-6-phosphate aminotransferase	99.92
PTZ00394		670	glucosamine-fructose-6-phosphate aminotransferase;	99.92
PF13537		125	GATase_7: Glutamine amidotransferase domain; PDB:	99.92
PF13522		133	GATase_6: Glutamine amidotransferase domain	99.9
KOG0572		474	consensus Glutamine phosphoribosylpyrophosphate am	99.89
COG0449		597	GlmS Glucosamine 6-phosphate synthetase, contains	99.89
TIGR03442		251	conserved hypothetical protein TIGR03442. Members	99.64
cd01908		257	YafJ Glutamine amidotransferases class-II (Gn-AT)_	99.64
cd00713		413	GltS Glutamine amidotransferases class-II (Gn-AT),	99.56
KOG1268		670	consensus Glucosamine 6-phosphate synthetases, con	99.55
PF00310		361	GATase_2: Glutamine amidotransferases class-II; In	99.24
KOG0573		520	consensus Asparagine synthase [Amino acid transpor	99.02
PRK11750		1485	gltB glutamate synthase subunit alpha; Provisional	98.85
PF13230		271	GATase_4: Glutamine amidotransferases class-II; PD	98.67
COG0067		371	GltB Glutamate synthase domain 1 [Amino acid trans	98.07
COG0121		252	Predicted glutamine amidotransferase [General func	97.33
PF09147		201	DUF1933: Domain of unknown function (DUF1933); Int	97.26
KOG0399		2142	consensus Glutamate synthase [Amino acid transport	90.01

>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum	Back alignment and domain information

Probab=100.00  E-value=7.3e-52  Score=352.12  Aligned_cols=217  Identities=65%  Similarity=1.113  Sum_probs=196.1

Q ss_pred             cccccccccCCccccccCCCCCCCchhhHHHHHHHhHccCCCCcceEECCcEEEEEeeCCCCCCCCCeeeeCCcEEEEEe
Q 026882            2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE   81 (231)
Q Consensus         2 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r~~~~~~~QP~~~~~~~~~lv~n   81 (231)
                      ||||++.||+|||||+||.+..+  +....++++.+....|++..+.+++...|+++..+.....|.+++.++++++++|
T Consensus         1 laif~~~~~~~p~el~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn   78 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ   78 (224)
T ss_pred             CcccccccCCCChHHcCCCcccc--CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence            79999999999999999986655  3344578899999999998888888899998765555667778888899999999


Q ss_pred             eEEcchHHHHHHhCcCCCCcHHHHHHHHHHHHhccCCCChHHHHhccccceEEEEEECCCCEEEEEe-----ecEEEEEe
Q 026882           82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVAS-----VPLYWGIT  156 (231)
Q Consensus        82 GeI~N~~eL~~~l~~~~~d~e~~li~~ly~~~~~~g~~g~~~~l~~L~G~FAf~i~D~~~~~l~~aR-----kPLyyg~~  156 (231)
                      |+|||+.+|+++|+..++.+|+++|+++|+++.++|++|.++++++|+|+|||||||.+++++++||     +||||+.+
T Consensus        79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~  158 (224)
T cd01910          79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIA  158 (224)
T ss_pred             eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEe
Confidence            9999999999999877788999999999999878887776789999999999999999999999999     99999987


Q ss_pred             cCCeEEEEeChhhHhhhccCceEEeCCCeEEEEeCCcEEEEECCCCCCCCCCCCcce--eeCceeEE
Q 026882          157 ADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEE--IWGATFKV  221 (231)
Q Consensus       157 ~~g~~~fASe~~aL~~~~~~~v~~~ppG~~~~~~~~~~~~y~~~~~~~~~~~r~ds~--~~g~~~~~  221 (231)
                      .+|.++||||+++|...|.+.+.+|||||||.+ ++++++|++|.|+++++||+||+  |||++|||
T Consensus       159 ~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~~~~~~vp~~~s~g~~cg~~f~v  224 (224)
T cd01910         159 ADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPMNKLKAVPRVDSEGEMCGATFKV  224 (224)
T ss_pred             CCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCCchhhcCCcccCcccEecceeeC
Confidence            689999999999999999777999999999988 78899999999999999999998  99999997

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.

>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length	Back alignment and domain information

>PLN02549 asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>PRK09431 asnB asparagine synthetase B; Provisional	Back alignment and domain information

>PTZ00077 asparagine synthetase-like protein; Provisional	Back alignment and domain information

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type	Back alignment and domain information

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase	Back alignment and domain information

>PRK08525 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK07631 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1	Back alignment and domain information

>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type	Back alignment and domain information

>PRK06388 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK07349 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK07272 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK08341 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK06781 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK07847 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>PRK09123 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK05793 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type	Back alignment and domain information

>PLN02440 amidophosphoribosyltransferase	Back alignment and domain information

>TIGR01134 purF amidophosphoribosyltransferase	Back alignment and domain information

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed	Back alignment and domain information

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)	Back alignment and domain information

>PRK09246 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>cd03766 Gn_AT_II_novel Gn_AT_II_novel	Back alignment and domain information

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional	Back alignment and domain information

>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type	Back alignment and domain information

>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type	Back alignment and domain information

>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)	Back alignment and domain information

>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]	Back alignment and domain information

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase	Back alignment and domain information

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional	Back alignment and domain information

>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A	Back alignment and domain information

>PF13522 GATase_6: Glutamine amidotransferase domain	Back alignment and domain information

>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]	Back alignment and domain information

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR03442 conserved hypothetical protein TIGR03442	Back alignment and domain information

>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	Back alignment and domain information

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type	Back alignment and domain information

>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group	Back alignment and domain information

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK11750 gltB glutamate synthase subunit alpha; Provisional	Back alignment and domain information

>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D	Back alignment and domain information

>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]	Back alignment and domain information

>COG0121 Predicted glutamine amidotransferase [General function prediction only]	Back alignment and domain information

>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices	Back alignment and domain information

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		231
1ct9_A		553	Asparagine synthetase B; amidotransferase, substra	4e-11
1jgt_A		513	Beta-lactam synthetase; asparagine synthetase, cla	5e-06

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553	Back alignment and structure

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 24/139 (17%)

Query: 90  LRQQYGLA-----KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTL 144
           LR +YG        S  EVIL    Y+             +  L G FAF +YD      
Sbjct: 83  LRAEYGDRYQFQTGSDCEVIL--ALYQEKGPEF-------LDDLQGMFAFALYDSEKDAY 133

Query: 145 FVA-----SVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFEN 199
            +       +PLY G    G +  A +   L   C +++  FP G +  +  G +RS+ +
Sbjct: 134 LIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSYLWSQDGEIRSYYH 192

Query: 200 P----KNKITAVPAAEEEI 214
                 + +      + E+
Sbjct: 193 RDWFDYDAVKDNVTDKNEL 211

PyMOL of 1ct9

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Length = 513	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		231
1ct9_A		553	Asparagine synthetase B; amidotransferase, substra	100.0
1xff_A		240	D-fructose-6-, glucosamine--fructose-6-phosphate a	100.0
1ao0_A		459	Glutamine phosphoribosylpyrophosphate amidotransfe	99.98
2bpl_A		608	Glucosamine--fructose-6-phosphate aminotransferase	99.97
1ecf_A		504	Glutamine phosphoribosylpyrophosphate amidotransf;	99.96
1jgt_A		513	Beta-lactam synthetase; asparagine synthetase, cla	99.93
1q15_A		503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	99.91
3mdn_A		274	Glutamine aminotransferase class-II domain protei;	99.86
1te5_A		257	Conserved hypothetical protein; glutamine amidotra	99.74
1ea0_A		1479	Glutamate synthase [NADPH] large chain; oxidoreduc	99.47
1ofd_A		1520	Ferredoxin-dependent glutamate synthase 2; oxidore	99.39

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1	Back alignment and structure

Probab=100.00  E-value=1.3e-34  Score=276.14  Aligned_cols=168  Identities=21%  Similarity=0.417  Sum_probs=147.3

Q ss_pred             hhhHHHHHHHhHccCCCCcceEECCcEEEEEee---CCCCCCCCCeeeeCCcEEEEEeeEEcchHHHHHHhCc---CCCC
Q 026882           27 KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---AKSA  100 (231)
Q Consensus        27 ~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r---~~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~---~~~d  100 (231)
                      ...+.+|++.|+|||||+.+++..++++|||+|   .+...+.||+.+.+++++++|||+|||+.+|+++|..   ++++
T Consensus        17 ~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~   96 (553)
T 1ct9_A           17 RKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTG   96 (553)
T ss_dssp             HHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSC
T ss_pred             HHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCC
Confidence            467889999999999999999999999999999   3444789999988889999999999999999999853   5566


Q ss_pred             cHHHHHHHHHHHHhccCCCChHHHHhccccceEEEEEECCCCEEEEEe-----ecEEEEEecCCeEEEEeChhhHhhhcc
Q 026882          101 NEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVAS-----VPLYWGITADGHVAFADDADLLKGACG  175 (231)
Q Consensus       101 ~e~~li~~ly~~~~~~g~~g~~~~l~~L~G~FAf~i~D~~~~~l~~aR-----kPLyyg~~~~g~~~fASe~~aL~~~~~  175 (231)
                      +|+++|+++|++      ||. +++++|+|+|||+|||.++++++++|     |||||+...++.++||||+++|...+ 
T Consensus        97 sDtEvil~l~~~------~g~-~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~-  168 (553)
T 1ct9_A           97 SDCEVILALYQE------KGP-EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-  168 (553)
T ss_dssp             CTTHHHHHHHHH------HTT-TTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTC-
T ss_pred             CcHHHHHHHHHH------HHH-HHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhc-
Confidence            666677799998      564 79999999999999999889999999     99999985467899999999998876 


Q ss_pred             CceEEeCCCeEEEEeCCcEEEEECCCC
Q 026882          176 KSLASFPQGCFFSTAVGGLRSFENPKN  202 (231)
Q Consensus       176 ~~v~~~ppG~~~~~~~~~~~~y~~~~~  202 (231)
                      +.|+.|||||++..+++++++||++.+
T Consensus       169 ~~i~~l~pG~~~~~~~g~~~~yw~~~~  195 (553)
T 1ct9_A          169 RTIKEFPAGSYLWSQDGEIRSYYHRDW  195 (553)
T ss_dssp             SEEEECCTTEEEETTTCSEEECCCCGG
T ss_pred             CCEEEECCCeEEEEcCCcEEEeecCCc
Confidence            469999999999887677999998764

PyMOL of 1ct9

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*	Back alignment and structure

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*	Back alignment and structure

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*	Back alignment and structure

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*	Back alignment and structure

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*	Back alignment and structure

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*	Back alignment and structure

>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}	Back alignment and structure

>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1	Back alignment and structure

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*	Back alignment and structure

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		231
d1ct9a2		192	d.153.1.1 (A:1-192) Asparagine synthetase B, N-ter	1e-05

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 192	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 132 FAFIVYDKSTSTLFVA-----SVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCF 186
           FAF +YD       +       +PLY G    G +  A +   L   C +++  FP G +
Sbjct: 121 FAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSY 179

Query: 187 FSTAVGGLRSFEN 199
             +  G +RS+ +
Sbjct: 180 LWSQDGEIRSYYH 192

PyMOL of d1ct9a2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		231
d1ct9a2		192	Asparagine synthetase B, N-terminal domain {Escher	100.0
d1jgta2		206	beta-Lactam synthetase {Streptomyces clavuligerus	99.97
d1gph12		234	Glutamine PRPP amidotransferase, N-terminal domain	99.97
d1xffa_		238	Glucosamine 6-phosphate synthase, N-terminal domai	99.96
d1ecfa2		249	Glutamine PRPP amidotransferase, N-terminal domain	99.94
d1q15a2		204	beta-Lactam synthetase {Pectobacterium carotovorum	99.93
d1te5a_		253	Hypothetical protein YafJ (PA1307) {Pseudomonas ae	99.13
d1ea0a3		422	Alpha subunit of glutamate synthase, N-terminal do	98.53
d1ofda3		430	Alpha subunit of glutamate synthase, N-terminal do	98.47

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-40  Score=276.05  Aligned_cols=166  Identities=21%  Similarity=0.418  Sum_probs=147.0

Q ss_pred             chhhHHHHHHHhHccCCCCcceEECCcEEEEEee---CCCCCCCCCeeeeCCcEEEEEeeEEcchHHHHHHhCc---CCC
Q 026882           26 PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---AKS   99 (231)
Q Consensus        26 ~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lgh~r---~~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~---~~~   99 (231)
                      .+..+.+|++.|+|||||+++++..++++|||+|   .+...+.||+...+++++++|||+|||+.+|+++|..   ..+
T Consensus        16 ~~~~~~~m~~~l~hRGpD~~~~~~~~~~~lgh~Rlsi~~~~~~~~~~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s   95 (192)
T d1ct9a2          16 LRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQT   95 (192)
T ss_dssp             HHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCS
T ss_pred             HHHHHHHHHHHhcccCCCCCCeEEeCCEEEEEEEEEEccccCCcccccccCCceEEEecCccchhHHHHHHHhcCcccCC
Confidence            4577889999999999999999999999999999   3444667887787889999999999999999999854   445


Q ss_pred             CcHHHHHHHHHHHHhccCCCChHHHHhccccceEEEEEECCCCEEEEEe-----ecEEEEEecCCeEEEEeChhhHhhhc
Q 026882          100 ANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVAS-----VPLYWGITADGHVAFADDADLLKGAC  174 (231)
Q Consensus       100 d~e~~li~~ly~~~~~~g~~g~~~~l~~L~G~FAf~i~D~~~~~l~~aR-----kPLyyg~~~~g~~~fASe~~aL~~~~  174 (231)
                      ++|+++++++|++      ||. ++++.|+|+|||++||..+++|+++|     |||||+.++++.++||||+++|+..+
T Consensus        96 ~sDtevll~~~~~------~g~-~~~~~l~G~fa~~i~d~~~~~l~~aRD~~G~kPLyy~~~~~g~~~fsSE~k~L~~~~  168 (192)
T d1ct9a2          96 GSDCEVILALYQE------KGP-EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC  168 (192)
T ss_dssp             CCTTHHHHHHHHH------HTT-TTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTC
T ss_pred             CCcHHHHHHHhhh------cch-hhhhhhhhheEEEEEecCcceeEEEEccccceeEEEEEecCcEEEEEeCHHHHHHhh
Confidence            5666677799998      664 79999999999999999999999999     99999997667899999999999998


Q ss_pred             cCceEEeCCCeEEEEeCCcEEEEEC
Q 026882          175 GKSLASFPQGCFFSTAVGGLRSFEN  199 (231)
Q Consensus       175 ~~~v~~~ppG~~~~~~~~~~~~y~~  199 (231)
                      . .+++||||||++++++++++||+
T Consensus       169 ~-~i~~~~pG~~l~~~~~~i~~y~~  192 (192)
T d1ct9a2         169 R-TIKEFPAGSYLWSQDGEIRSYYH  192 (192)
T ss_dssp             S-EEEECCTTEEEETTTCSEEECCC
T ss_pred             C-CeEEcCCccEEEEcCCcEEeecC
Confidence            5 59999999999998889999985

PyMOL of d1ct9a2

>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}	Back information, alignment and structure

>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}	Back information, alignment and structure

>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}	Back information, alignment and structure