Citrus Sinensis ID: 026889
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 231 | ||||||
| 297734310 | 307 | unnamed protein product [Vitis vinifera] | 0.978 | 0.736 | 0.807 | 1e-102 | |
| 359491022 | 291 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.776 | 0.807 | 1e-102 | |
| 224133212 | 292 | predicted protein [Populus trichocarpa] | 0.874 | 0.691 | 0.837 | 1e-96 | |
| 363807524 | 290 | uncharacterized protein LOC100780288 [Gl | 0.904 | 0.720 | 0.790 | 1e-93 | |
| 449439449 | 300 | PREDICTED: uncharacterized protein LOC10 | 0.904 | 0.696 | 0.809 | 2e-93 | |
| 255645461 | 291 | unknown [Glycine max] | 0.904 | 0.718 | 0.785 | 6e-93 | |
| 449510955 | 275 | PREDICTED: uncharacterized protein LOC10 | 0.883 | 0.741 | 0.824 | 1e-92 | |
| 356524674 | 291 | PREDICTED: uncharacterized protein LOC10 | 0.878 | 0.697 | 0.799 | 1e-92 | |
| 255583469 | 310 | conserved hypothetical protein [Ricinus | 0.969 | 0.722 | 0.784 | 4e-92 | |
| 388493884 | 291 | unknown [Lotus japonicus] | 0.891 | 0.707 | 0.772 | 4e-90 |
| >gi|297734310|emb|CBI15557.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/229 (80%), Positives = 197/229 (86%), Gaps = 3/229 (1%)
Query: 4 ITTLLCFICDFTLLTLLMFLTRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPV 63
+ TLL I L L L RIL WGEDRRFDEMRSNLGKLA+FW FQAVWVWTVSLPV
Sbjct: 65 VLTLLVVIWGLRLGIFL--LMRILQWGEDRRFDEMRSNLGKLAVFWTFQAVWVWTVSLPV 122
Query: 64 TVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSR 123
T+VNAS RDPS+QA D+IGWIMWSVG++IEA ADQQKLSFKNSPENRGKWCNVG WKY+R
Sbjct: 123 TIVNASGRDPSLQAADIIGWIMWSVGITIEASADQQKLSFKNSPENRGKWCNVGVWKYTR 182
Query: 124 HPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNM 183
HPNYFGEI LWWGIFVASTPVL+GAEWLVILGPIFLTLLLLF+SGIPLLEESADKKFGN+
Sbjct: 183 HPNYFGEILLWWGIFVASTPVLEGAEWLVILGPIFLTLLLLFVSGIPLLEESADKKFGNV 242
Query: 184 PAYRLYKKTTSPLIPLPPVVYGNLPWWLK-TILFELPLYSRNFPQEGPN 231
YRLYK TTSPL+PLPPVVYGNLP W K T L E P YSRN PQEG N
Sbjct: 243 AGYRLYKSTTSPLVPLPPVVYGNLPSWFKTTFLLEFPFYSRNLPQEGQN 291
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491022|ref|XP_003634205.1| PREDICTED: uncharacterized protein LOC100853969 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224133212|ref|XP_002321511.1| predicted protein [Populus trichocarpa] gi|222868507|gb|EEF05638.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|363807524|ref|NP_001241888.1| uncharacterized protein LOC100780288 [Glycine max] gi|255636515|gb|ACU18596.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449439449|ref|XP_004137498.1| PREDICTED: uncharacterized protein LOC101219154 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|255645461|gb|ACU23226.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449510955|ref|XP_004163821.1| PREDICTED: uncharacterized protein LOC101228363 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356524674|ref|XP_003530953.1| PREDICTED: uncharacterized protein LOC100782499 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255583469|ref|XP_002532493.1| conserved hypothetical protein [Ricinus communis] gi|223527792|gb|EEF29892.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|388493884|gb|AFK35008.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 231 | ||||||
| TAIR|locus:2027774 | 302 | AT1G73650 [Arabidopsis thalian | 0.887 | 0.678 | 0.660 | 1.4e-71 | |
| TAIR|locus:2194090 | 305 | AT1G18180 [Arabidopsis thalian | 0.883 | 0.668 | 0.653 | 9.9e-71 | |
| FB|FBgn0035914 | 316 | CG6282 [Drosophila melanogaste | 0.917 | 0.670 | 0.422 | 2.8e-43 | |
| ZFIN|ZDB-GENE-030131-3630 | 288 | si:ch211-210c8.6 "si:ch211-210 | 0.770 | 0.618 | 0.398 | 3.1e-35 | |
| UNIPROTKB|G4N6G0 | 335 | MGG_03731 "Uncharacterized pro | 0.532 | 0.367 | 0.450 | 7.6e-25 | |
| DICTYBASE|DDB_G0279829 | 267 | DDB_G0279829 "DUF1295 family p | 0.744 | 0.644 | 0.353 | 2.6e-24 | |
| UNIPROTKB|Q74AM9 | 256 | GSU2323 "Uncharacterized prote | 0.714 | 0.644 | 0.337 | 4.3e-22 | |
| TIGR_CMR|GSU_2323 | 256 | GSU_2323 "membrane protein, pu | 0.714 | 0.644 | 0.337 | 4.3e-22 | |
| UNIPROTKB|G4NC19 | 328 | MGG_00459 "Uncharacterized pro | 0.523 | 0.368 | 0.369 | 5.2e-21 | |
| UNIPROTKB|Q722V9 | 257 | LMOf2365_0620 "Putative membra | 0.510 | 0.459 | 0.364 | 5.3e-17 |
| TAIR|locus:2027774 AT1G73650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 136/206 (66%), Positives = 149/206 (72%)
Query: 25 RILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWI 84
RIL WGEDRRFDE R N+ +L IFW QAVWVWTVSLP+T+VNASD S++ DVIGW
Sbjct: 84 RILQWGEDRRFDEQRGNIVRLIIFWTLQAVWVWTVSLPLTLVNASDGGGSLKPADVIGWT 143
Query: 85 MWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPV 144
MW G IEA ADQQKLSFKNSPENRGKWC+VG WKYSRHPNYFGE+ LWWGIFVA++PV
Sbjct: 144 MWVFGFLIEAAADQQKLSFKNSPENRGKWCDVGVWKYSRHPNYFGEMLLWWGIFVAASPV 203
Query: 145 LDGAEWXXXXXXXXXXXXXXXXXXXXXXEESADKKFGNMPAYRLYKKTTSPLIPLPPVVY 204
L+GAE+ E SADKK GN AYR YKKTTSPLI P VY
Sbjct: 204 LEGAEYLVIFGPLFLTLLLLFVSGIPLLEASADKKHGNSGAYRSYKKTTSPLILFPRGVY 263
Query: 205 GNLPWWLKTI-LFELPLYSRNFPQEG 229
GNLP W KT+ LFE P YSRN PQEG
Sbjct: 264 GNLPGWFKTVFLFEFPFYSRNLPQEG 289
|
|
| TAIR|locus:2194090 AT1G18180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0035914 CG6282 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-3630 si:ch211-210c8.6 "si:ch211-210c8.6" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4N6G0 MGG_03731 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0279829 DDB_G0279829 "DUF1295 family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q74AM9 GSU2323 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_2323 GSU_2323 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4NC19 MGG_00459 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q722V9 LMOf2365_0620 "Putative membrane protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 231 | |||
| pfam06966 | 235 | pfam06966, DUF1295, Protein of unknown function (D | 1e-74 | |
| COG3752 | 272 | COG3752, COG3752, Steroid 5-alpha reductase family | 2e-33 |
| >gnl|CDD|219244 pfam06966, DUF1295, Protein of unknown function (DUF1295) | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 1e-74
Identities = 91/175 (52%), Positives = 120/175 (68%), Gaps = 6/175 (3%)
Query: 25 RILNWGEDRRFDEMRSNLGK------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV 78
R WGED R+ ++R N GK L IF+I QAV ++ VSLPV + NAS +P++ A
Sbjct: 61 RTWGWGEDYRYVDLRKNWGKWPYLLSLLIFFILQAVLLYIVSLPVYLANASGPNPALGAW 120
Query: 79 DVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIF 138
D+IG +W VG+ EA+ADQQ +FK P N+GK C+ G W+YSRHPNYFGE +WWGIF
Sbjct: 121 DIIGIAIWLVGIGFEALADQQLWAFKGDPANKGKVCDTGLWRYSRHPNYFGEALIWWGIF 180
Query: 139 VASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTT 193
+ + VL G EW I GP+ +TLLL+F+SGIPLLE S KK+G+ YR Y++ T
Sbjct: 181 LIAINVLSGLEWWTIAGPLLMTLLLVFVSGIPLLEASMLKKYGDREDYRAYQRRT 235
|
This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long. Length = 235 |
| >gnl|CDD|226275 COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 231 | |||
| PF06966 | 235 | DUF1295: Protein of unknown function (DUF1295); In | 100.0 | |
| COG3752 | 272 | Steroid 5-alpha reductase family enzyme [General f | 100.0 | |
| KOG4650 | 311 | consensus Predicted steroid reductase [General fun | 100.0 | |
| PF01222 | 432 | ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 fam | 99.87 | |
| COG2020 | 187 | STE14 Putative protein-S-isoprenylcysteine methylt | 99.86 | |
| KOG1435 | 428 | consensus Sterol reductase/lamin B receptor [Lipid | 99.8 | |
| PF04191 | 106 | PEMT: Phospholipid methyltransferase ; InterPro: I | 99.7 | |
| KOG2628 | 201 | consensus Farnesyl cysteine-carboxyl methyltransfe | 99.66 | |
| PF04140 | 94 | ICMT: Isoprenylcysteine carboxyl methyltransferase | 99.54 | |
| KOG1638 | 257 | consensus Steroid reductase [Lipid transport and m | 99.37 | |
| PLN02392 | 260 | probable steroid reductase DET2 | 99.36 | |
| PF02544 | 150 | Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase | 99.28 | |
| COG1755 | 172 | Uncharacterized protein conserved in bacteria [Fun | 99.19 | |
| PLN02560 | 308 | enoyl-CoA reductase | 99.08 | |
| PLN03164 | 323 | 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal | 99.0 | |
| KOG1640 | 304 | consensus Predicted steroid reductase [Lipid trans | 97.92 | |
| PF07298 | 191 | NnrU: NnrU protein; InterPro: IPR009915 This famil | 97.65 | |
| KOG1639 | 297 | consensus Steroid reductase required for elongatio | 96.98 | |
| PLN02797 | 164 | phosphatidyl-N-dimethylethanolamine N-methyltransf | 90.28 | |
| COG4094 | 219 | Predicted membrane protein [Function unknown] | 87.9 |
| >PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=354.19 Aligned_cols=189 Identities=44% Similarity=0.950 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHH
Q 026889 5 TTLLCFICDFTLLTLLMFLTRILNWGEDRRFDEMRSNLG------KLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV 78 (231)
Q Consensus 5 ~~~~~~~~~w~~RL~~~l~~R~~~~geD~R~~~~r~~~~------~~~~~~~~q~~~i~~~~lP~~~~~~~~~~~~~~~~ 78 (231)
.+|++++++||+||+.|++.|..+.|||+||+++|++++ +++.+|++|+++++++++|+++++..+..++++..
T Consensus 41 ~lv~~lv~~W~~RL~~~l~~R~~~~~eD~R~~~~r~~~~~~~~~~~~~~~~~~q~~~~~~~~lP~~~~~~~~~~~~~~~~ 120 (235)
T PF06966_consen 41 LLVAALVIVWGLRLGYFLFRRNLGWGEDWRYDDLRKKWGEWFWPFSFFFIFLFQALLVWLISLPVYLANSSPPNPPLNWL 120 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHH
Confidence 578899999999999999999999999999999999864 46678999999999999999988765545678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccCcchHHHHHHHHHHHHHhccccCchhHHHHHHHHH
Q 026889 79 DVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIF 158 (231)
Q Consensus 79 ~~~g~~l~~~G~~le~~Ad~ql~~f~~~~~~~~~li~~Gly~~~RHPnY~geil~w~g~~l~~~~~~~g~~w~~~~~~i~ 158 (231)
+++|++++++|+.+|++||.||.+||.+++|++++|++|+|++||||||+||+++|+|+++++.+...+..++++++|++
T Consensus 121 ~~~g~~l~~~g~~~E~~AD~Q~~~fk~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~~pl~ 200 (235)
T PF06966_consen 121 DILGIALFLIGFLLETVADQQKYRFKKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISSGSGWLWWAIIGPLF 200 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877544444678899999
Q ss_pred HHHHHHHHhCcHHHHHHHHhHcCCchHHHHHHhhC
Q 026889 159 LTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTT 193 (231)
Q Consensus 159 ~~~ll~~~~~i~~eE~~l~~k~G~~~~Y~~Y~~~t 193 (231)
+++++.++++++..|+++.+|||++|+|+||||+|
T Consensus 201 ~~~~l~~~sgip~~E~~~~~kyg~~~~Y~~Y~~~t 235 (235)
T PF06966_consen 201 MTLLLLFVSGIPLLEKRMAKKYGDRPAYQEYQRRT 235 (235)
T ss_pred HHHHHHHHcCchHHHHHHHHhcCCCHhHHHHHhcC
Confidence 98888889999999999999999999999999997
|
|
| >COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4650 consensus Predicted steroid reductase [General function prediction only] | Back alignment and domain information |
|---|
| >PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis | Back alignment and domain information |
|---|
| >COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2 | Back alignment and domain information |
|---|
| >KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2 | Back alignment and domain information |
|---|
| >KOG1638 consensus Steroid reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02392 probable steroid reductase DET2 | Back alignment and domain information |
|---|
| >PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1 | Back alignment and domain information |
|---|
| >COG1755 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PLN02560 enoyl-CoA reductase | Back alignment and domain information |
|---|
| >PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins | Back alignment and domain information |
|---|
| >KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase | Back alignment and domain information |
|---|
| >COG4094 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 231 | |||
| 4a2n_B | 194 | Isoprenylcysteine carboxyl methyltransferase; memb | 1e-06 |
| >4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} Length = 194 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-06
Identities = 33/201 (16%), Positives = 66/201 (32%), Gaps = 13/201 (6%)
Query: 1 MLFITTLLCFICDFTLLTLLMFLTRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVS 60
M +CFI F + + + +++ ++R N K +F F + ++
Sbjct: 1 MNENLWKICFIVMFIIWVFVRKVYGTRAM-KNKSKKKVRPNFEKSLVFLNFIGMVFLPLT 59
Query: 61 LPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQ---KLSFKNSPENRGKWCNVG 117
+ S ++ + I+ + + + + S ++ K G
Sbjct: 60 AVFSSYLDSFNINLPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEG 119
Query: 118 FWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESAD 177
+K RHP Y + ++I G + +L +P EE
Sbjct: 120 IYKNIRHPMYAHLWLWVITQGIIL-----SNWVVLIFGIVAWAILYFIR--VPKEEELLI 172
Query: 178 KKFGNMPAYRLYKKTTSPLIP 198
++FG Y Y T L P
Sbjct: 173 EEFG--DEYIEYMGKTGRLFP 191
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 231 | |||
| 4a2n_B | 194 | Isoprenylcysteine carboxyl methyltransferase; memb | 99.95 |
| >4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=193.38 Aligned_cols=116 Identities=19% Similarity=0.287 Sum_probs=93.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCCCCCccccccccccccCcchHHHHHHHHHHHHHhccccCchhHH
Q 026889 75 VQAVDVIGWIMWSVGVSIEAIADQQKLSF-KN--SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWL 151 (231)
Q Consensus 75 ~~~~~~~g~~l~~~G~~le~~Ad~ql~~f-~~--~~~~~~~li~~Gly~~~RHPnY~geil~w~g~~l~~~~~~~g~~w~ 151 (231)
..+..++|.+++++|+.++.+|+.|++++ +. +++++++++++|+|++||||||+|+++.|+|+++... +++
T Consensus 74 p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~------s~~ 147 (194)
T 4a2n_B 74 PDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILS------NWV 147 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHT------CHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhc------cHH
Confidence 45688999999999999999999999654 43 3456788999999999999999999999999988752 233
Q ss_pred HHH-HHHHHHHHHHHHhCcHHHHHHHHhHcCCchHHHHHHhhCCCccccC
Q 026889 152 VIL-GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 200 (231)
Q Consensus 152 ~~~-~~i~~~~ll~~~~~i~~eE~~l~~k~G~~~~Y~~Y~~~t~~~iP~~ 200 (231)
+++ ++++.+++ +..+++.||+.+.++|| ++|++|+++||++||++
T Consensus 148 ~~~~~~~~~~~~--~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 148 VLIFGIVAWAIL--YFIRVPKEEELLIEEFG--DEYIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHT--HHHHHHHHHCBSSSCC-
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhC--HHHHHHHHhCCeeCcee
Confidence 333 33332222 23468999999999999 99999999999999985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00