Citrus Sinensis ID: 026900

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVMAATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLVTRIFILSLFEL
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHcccccEEEEEccccEEEEcccccEEEccccccEEEcccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEcEEEEccccEEEEEEEEEEEccccEEEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEccccccccHccccccHHHHHHHHHHHHHHHHHHcccccHHHHcccccccEEEEccccEEEEcccccEEEEcccccEEEEccccccccEEEEEEcccccccccHHHcccHHHHHHHHHHHHHccccccccccccHHHHHEHHHHccccccEEEEEEEEEEEccccccEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
marmvmmqhqthpcfsiltstlsgfngaslHSQVRQqqqtplprealhvtasnekknpvmaatqfaVPRRNAMALILSSYifsdfgfrntaLAQQsvgfreyidtfdgysfkypqnwiqvrgagadifyrdpyvldenvsvelsspsssryksvedlgppkeaGRKVLRQYLTEFMStrlgvrresnilstssrvaddgrLYYLVEVSCVWCWNITQLLVTRIFILSLFEL
Flexible Loop (DISEMBL)
MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHvtasnekknpvMAATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSvelsspsssryksvedlgppkeagrkVLRQYLTEfmstrlgvrresnilstssrvaddgRLYYLVEVSCVWCWNITQLLVTRIFILSLFEL
Low Complexity Region (SEG)
MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVMAATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELsspsssRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLVTRIFILSLFEL
Disordered region (IsUnstruct)
************PCFSILTSTLSGF***********************************AATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENV***************************VLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLVTRIFILSLF**
Disordered Region (DISOPRED)
********HQTHPCFSIL****************************************************NAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYL************************DDGRLYYLVEVSCVWCWNITQLLVTRIFILSLFEL
Disordered Region (DISEMBL)
**********THPCFSILTSTLSGFNGA**************PREALHVTASNEKKNPVMAATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVS*****************GPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLVTRIFILSLFEL
Disordered Region (DISPRO)
*ARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNE*********QFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLVTRIFILSLFEL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVMAATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLVTRIFILSLFEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
O23403	287	PsbP domain-containing pr	no	no	0.662	0.533	0.687	2e-49
Q9SA52	378	Chloroplast stem-loop bin	no	no	0.277	0.169	0.523	2e-06
P82538	230	PsbP-like protein 1, chlo	no	no	0.458	0.460	0.290	2e-05

>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1

 Score =  195 bits (496), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 123/157 (78%), Gaps = 4/157 (2%)

Query: 66  AVPRRNAM--ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGA 123
           AV RR +M   L++S  I S      TA A   V FREYIDTFDGYSFKYPQNWIQVRGA
Sbjct: 76  AVGRRKSMMMGLLMSGLIVSQANL-PTAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGA 133

Query: 124 GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR 183
           GADIF+RDP VLDEN+SVE SSPSSS Y S+EDLG P+E G++VLRQYLTEFMSTRLGV+
Sbjct: 134 GADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVK 193

Query: 184 RESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLV 220
           R++NILSTSSRVADDG+LYY VEV+     N  +L V
Sbjct: 194 RQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAV 230

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA52|CP41B_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 1  MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVM 60
          MA+M+M+Q Q  P FS+LTS+LS FNGA LH QV+ +++   P+ AL+V+AS+EKK  +M
Sbjct: 1  MAKMMMLQ-QHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIM 59

Query: 61 AATQF 65
            T+F
Sbjct: 60 GGTRF 64

Binds and cleaves RNA, particularly in stem-loops. Associates with pre-ribosomal particles in chloroplasts, and participates in chloroplast ribosomal RNA metabolism, probably during the final steps of 23S rRNA maturation. May enhance transcription by the plastid-encoded polymerase and translation in plastid via the stabilization of ribosome assembly intermediates. Required for chloroplast integrity. Involved in the regulation of the circadian system. Involved in the regulation of heteroglycans and monosaccharide mobilization.

Arabidopsis thaliana (taxid: 3702)

>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)

Query: 93  AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYK 152
           A+   GF    D  D Y+F YP  W +V   G D  Y+D     E+VSV L  P+S +  
Sbjct: 75  AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNL-VPTSKQ-- 131

Query: 153 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSC 209
           ++++ GPPK+    ++++ L            +   L  +S    DG+ YY  E + 
Sbjct: 132 TIKEFGPPKQIAETLIKKVLAP--------PNQKTTLIDASEHDVDGKTYYQFEFTV 180

Required for efficient repair of photodamaged PSII, but not tightly associated with the complex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
224124634	212	predicted protein [Populus trichocarpa]	0.670	0.731	0.845	4e-67
224124990	265	predicted protein [Populus trichocarpa]	0.675	0.588	0.814	9e-65
255542948	265	Thylakoid lumenal 21.5 kDa protein, chlo	0.714	0.622	0.744	5e-63
311335431	257	PsbP domain protein 1 [Gossypium hirsutu	0.670	0.603	0.801	6e-63
296089803	248	unnamed protein product [Vitis vinifera]	0.779	0.725	0.718	4e-62
359487555	282	PREDICTED: psbP domain-containing protei	0.779	0.638	0.718	5e-62
388502234	326	unknown [Lotus japonicus]	0.887	0.628	0.527	4e-61
356571066	227	PREDICTED: LOW QUALITY PROTEIN: psbP dom	0.735	0.748	0.681	9e-60
356505763	258	PREDICTED: psbP domain-containing protei	0.679	0.608	0.75	3e-58
449443516	258	PREDICTED: psbP domain-containing protei	0.649	0.581	0.761	2e-56

>gi|224124634|ref|XP_002330072.1| predicted protein [Populus trichocarpa] gi|222871497|gb|EEF08628.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 131/155 (84%), Positives = 142/155 (91%)

Query: 66  AVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGA 125
           AVPRRNAMALILSSY+FS+FGF N A AQQSVGFREYID FDGYSFKYPQNWIQVRGAGA
Sbjct: 1   AVPRRNAMALILSSYMFSEFGFDNLAFAQQSVGFREYIDQFDGYSFKYPQNWIQVRGAGA 60

Query: 126 DIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRE 185
           DIF+RDP+VLDEN+SVELSSPSSSRYKSVEDLGPP+EAG+KVL+QYLTEFMSTRLGVRRE
Sbjct: 61  DIFFRDPFVLDENLSVELSSPSSSRYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRE 120

Query: 186 SNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLV 220
           SNILSTSSRVADDG+LYY VEV+     N  +L V
Sbjct: 121 SNILSTSSRVADDGKLYYQVEVNIKSYANNNELAV 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124990|ref|XP_002319475.1| predicted protein [Populus trichocarpa] gi|118485159|gb|ABK94442.1| unknown [Populus trichocarpa] gi|222857851|gb|EEE95398.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 127/156 (81%), Positives = 140/156 (89%)

Query: 65  FAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAG 124
           FAVPRRNAMALILSSYIFS+ GF N A AQ+SVGFREYID FDGYS K+PQNWIQVRGAG
Sbjct: 51  FAVPRRNAMALILSSYIFSEVGFNNIAFAQRSVGFREYIDQFDGYSLKHPQNWIQVRGAG 110

Query: 125 ADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRR 184
           ADIF+RDP+VLDEN+SVELSSPSSS YKSVEDLGPP+EAG+KVL+QYLTEFMSTRLGVRR
Sbjct: 111 ADIFFRDPFVLDENLSVELSSPSSSNYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRR 170

Query: 185 ESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLV 220
           ESNI+STSSRVADDG+LYY VEV+     N  +L V
Sbjct: 171 ESNIISTSSRVADDGKLYYQVEVNIKSYANNNELAV 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542948|ref|XP_002512537.1| Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223548498|gb|EEF49989.1| Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 145/168 (86%), Gaps = 3/168 (1%)

Query: 41  PLPREALHVTASNEKKNPVMAATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFR 100
           P+  ++   T+ + K  P  A   FAVPRR+ MALI SS I S+ GF ++ALAQ SVGFR
Sbjct: 32  PISADSTRCTSISCKNQPTKA---FAVPRRSTMALIFSSCILSEVGFHSSALAQSSVGFR 88

Query: 101 EYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPP 160
           EYIDTFDGYSFKYP+NWIQVRGAGADIF+RDPYVLDEN+SVE+SSPSSS+Y SVEDLGPP
Sbjct: 89  EYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPYVLDENLSVEMSSPSSSKYTSVEDLGPP 148

Query: 161 KEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVS 208
           +EAG+KVL+QYLTEFMSTRLGVRRES+ILSTSSRVADDG+LYY VEV+
Sbjct: 149 QEAGKKVLKQYLTEFMSTRLGVRRESDILSTSSRVADDGKLYYQVEVN 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|311335431|gb|ADP89574.1| PsbP domain protein 1 [Gossypium hirsutum]

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 125/156 (80%), Positives = 139/156 (89%), Gaps = 1/156 (0%)

Query: 66  AVPRRNAMALILSSYIFSDFGFR-NTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAG 124
           ++PRRNAMALILS+YIFS+ G   N A A+ SVGFREYIDTFDGYS KYPQNWIQVRGAG
Sbjct: 43  SIPRRNAMALILSTYIFSEVGLHDNIAFAEPSVGFREYIDTFDGYSLKYPQNWIQVRGAG 102

Query: 125 ADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRR 184
           ADIF+RDPYVLDEN+SVELSSPSSSRYK+VEDLGPP+EAG+KVL+QYLTEFMSTRLGVRR
Sbjct: 103 ADIFFRDPYVLDENLSVELSSPSSSRYKTVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRR 162

Query: 185 ESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLV 220
           ESNILSTSSRVADDG+LYY VEV+     N  +L V
Sbjct: 163 ESNILSTSSRVADDGKLYYQVEVNIKSYANTNELAV 198

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089803|emb|CBI39622.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/181 (71%), Positives = 148/181 (81%), Gaps = 1/181 (0%)

Query: 41  PLPREALHVTASNEKKNPVMAATQ-FAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGF 99
           P P    + +AS+   +  +  T+ FAV RR+AMALI SSYIFS  G  + ALAQ SVGF
Sbjct: 9   PAPFATTNYSASSRAISCQLQTTKGFAVLRRDAMALIFSSYIFSRVGLHDVALAQPSVGF 68

Query: 100 REYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGP 159
           REYIDTFDGYSFKYPQNWIQVRG+GADIF+RDP+VLDEN+SVELSSPSSSRYKSVEDLG 
Sbjct: 69  REYIDTFDGYSFKYPQNWIQVRGSGADIFFRDPFVLDENLSVELSSPSSSRYKSVEDLGQ 128

Query: 160 PKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLL 219
           P+EAG+KVL+QYLTEFMSTRLGVRRESNI+STSSRVADDGR YY VEV+     N  +L 
Sbjct: 129 PQEAGKKVLQQYLTEFMSTRLGVRRESNIVSTSSRVADDGRTYYQVEVNIKSYANNNELA 188

Query: 220 V 220
           V
Sbjct: 189 V 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487555|ref|XP_002281448.2| PREDICTED: psbP domain-containing protein 1, chloroplastic [Vitis vinifera]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 130/181 (71%), Positives = 148/181 (81%), Gaps = 1/181 (0%)

Query: 41  PLPREALHVTASNEKKNPVMAATQ-FAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGF 99
           P P    + +AS+   +  +  T+ FAV RR+AMALI SSYIFS  G  + ALAQ SVGF
Sbjct: 43  PAPFATTNYSASSRAISCQLQTTKGFAVLRRDAMALIFSSYIFSRVGLHDVALAQPSVGF 102

Query: 100 REYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGP 159
           REYIDTFDGYSFKYPQNWIQVRG+GADIF+RDP+VLDEN+SVELSSPSSSRYKSVEDLG 
Sbjct: 103 REYIDTFDGYSFKYPQNWIQVRGSGADIFFRDPFVLDENLSVELSSPSSSRYKSVEDLGQ 162

Query: 160 PKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLL 219
           P+EAG+KVL+QYLTEFMSTRLGVRRESNI+STSSRVADDGR YY VEV+     N  +L 
Sbjct: 163 PQEAGKKVLQQYLTEFMSTRLGVRRESNIVSTSSRVADDGRTYYQVEVNIKSYANNNELA 222

Query: 220 V 220
           V
Sbjct: 223 V 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502234|gb|AFK39183.1| unknown [Lotus japonicus]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/258 (52%), Positives = 167/258 (64%), Gaps = 53/258 (20%)

Query: 1   MARMVMM--QHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNP 58
           MA+MV+   QH   P FS L S+LS F+  +  +Q++ +++   P+ +   TAS+ KK  
Sbjct: 1   MAKMVVAPPQHHNQPSFSPLASSLSEFSSPTFLTQIQLKRKVWQPKGSFSATASSPKKML 60

Query: 59  VMAATQF------------------------------------------------AVPRR 70
           +M   +F                                                AVPRR
Sbjct: 61  MMGGNRFTGVFLSRLFVKEGHQVTLCTRGEVPITQHLPDESDSDCADFSSKSKAFAVPRR 120

Query: 71  NAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYR 130
            AM+LILSS I S  G    A AQQ   FREY+DTFDGYSFKYP NWIQVRGAGADIF+R
Sbjct: 121 KAMSLILSSCILSKVGL---AFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAGADIFFR 177

Query: 131 DPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILS 190
           DPY+LDEN+S+E+SSPSSS+YKSVEDLGPP+EAG+KVL+QYLTEFMSTRLGVRRE+N+LS
Sbjct: 178 DPYILDENLSLEISSPSSSQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLS 237

Query: 191 TSSRVADDGRLYYLVEVS 208
           TSSRVADDG+LYY VEV+
Sbjct: 238 TSSRVADDGKLYYQVEVN 255

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571066|ref|XP_003553702.1| PREDICTED: LOW QUALITY PROTEIN: psbP domain-containing protein 1, chloroplastic-like [Glycine max]

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 120/176 (68%), Positives = 140/176 (79%), Gaps = 6/176 (3%)

Query: 45  EALHVTASNEKKNPVMAATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYID 104
           EA     + +K+N    A  FAVPRR AM+LILSSY+ S+ G    ALAQQS  FREYID
Sbjct: 2   EAAESNLAVDKEN---HAKAFAVPRRKAMSLILSSYVLSEVGL---ALAQQSPVFREYID 55

Query: 105 TFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAG 164
            FDG SF+YP +WIQVRGAGADIF+RDP+VLDEN+SVE+S PSSS+YK+VEDLG P+EAG
Sbjct: 56  AFDGCSFQYPGSWIQVRGAGADIFFRDPFVLDENLSVEISXPSSSQYKNVEDLGAPQEAG 115

Query: 165 RKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLV 220
           +KVL+QYLTEFMSTRLGVRRESNILSTSSRV DDGRLYY +EV+     N  +L V
Sbjct: 116 KKVLKQYLTEFMSTRLGVRRESNILSTSSRVTDDGRLYYQIEVNIKSYANNNELAV 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505763|ref|XP_003521659.1| PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Glycine max]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 120/160 (75%), Positives = 137/160 (85%), Gaps = 3/160 (1%)

Query: 61  AATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQV 120
           +A  FAVPRR A++LILSSY  S+ G    ALAQQS  FREYID FDGYSF+YP +WIQV
Sbjct: 43  SAKAFAVPRRKALSLILSSYFLSEAGL---ALAQQSPVFREYIDAFDGYSFQYPGSWIQV 99

Query: 121 RGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL 180
           RGAGADIF+RDP+VLDEN+S+E+SSPSSS+YKSVEDLGPP+EAG+KVL+QYLTEFMSTRL
Sbjct: 100 RGAGADIFFRDPFVLDENLSLEISSPSSSQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRL 159

Query: 181 GVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLV 220
           GVRRESNILSTSSRVADDGRLYY VEV+     N  +L V
Sbjct: 160 GVRRESNILSTSSRVADDGRLYYQVEVNIKSYANNNELAV 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443516|ref|XP_004139523.1| PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Cucumis sativus] gi|449520599|ref|XP_004167321.1| PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Cucumis sativus]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/155 (76%), Positives = 133/155 (85%), Gaps = 5/155 (3%)

Query: 66  AVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGA 125
           AVPRR+AMAL+LS+ IFS     N+ALA  SVG  EYIDTFDGYSFKYP+NWIQVRGAGA
Sbjct: 50  AVPRRSAMALMLSTCIFS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGA 104

Query: 126 DIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRE 185
           DIF+RDP+VLDEN+SVE SSPSSSRY SV+DLGPP+EAG+KVL+QYLTEFMSTRLGVRRE
Sbjct: 105 DIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRE 164

Query: 186 SNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLV 220
           SNILSTSSR+ADDGR YY VEV+     N  +L V
Sbjct: 165 SNILSTSSRMADDGRTYYQVEVNIKSYANNNELAV 199

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2130295	287	PPD1 "PsbP-Domain Protein1" [A	0.662	0.533	0.649	3.8e-46
TAIR|locus:2203028	378	CRB "chloroplast RNA binding"	0.748	0.457	0.322	7.4e-11
TAIR|locus:2100681	230	PPL1 "PsbP-like protein 1" [Ar	0.489	0.491	0.272	0.00029

TAIR|locus:2130295 PPD1 "PsbP-Domain Protein1" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 102/157 (64%), Positives = 117/157 (74%)

Query:    66 AVPRRNAM--ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGA 123
             AV RR +M   L++S  I S      TA A   V FREYIDTFDGYSFKYPQNWIQVRGA
Sbjct:    76 AVGRRKSMMMGLLMSGLIVSQANLP-TAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGA 133

Query:   124 GADIFYRDPYVLDENVSVELXXXXXXRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR 183
             GADIF+RDP VLDEN+SVE        Y S+EDLG P+E G++VLRQYLTEFMSTRLGV+
Sbjct:   134 GADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVK 193

Query:   184 RESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLV 220
             R++NILSTSSRVADDG+LYY VEV+     N  +L V
Sbjct:   194 RQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAV 230

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048564 "photosystem I assembly" evidence=IMP

TAIR|locus:2203028 CRB "chloroplast RNA binding" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 61/189 (32%), Positives = 98/189 (51%)

Query:     1 MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVM 60
             MA+M+M+Q Q  P FS+LTS+LS FNGA LH QV+ +++   P+ AL+V+AS+EKK  +M
Sbjct:     1 MAKMMMLQ-QHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIM 59

Query:    61 AATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQV 120
               T+F +    +  L+   +  + F    + +A+Q  G  E    F  +S K     + +
Sbjct:    60 GGTRF-IGLFLSRILVKEGHQVTLFTRGKSPIAKQLPG--ESDQDFADFSSKI----LHL 112

Query:   121 RGAGADIFYRDPYVLDENVSVELXXXXXXRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL 180
             +G   D  +    +  E   V          +  E++ P  EA  K L QY+  + S+  
Sbjct:   113 KGDRKDYDFVKSSLSAEGFDVVYDING----REAEEVEPILEALPK-LEQYI--YCSSA- 164

Query:   181 GVRRESNIL 189
             GV  +S+IL
Sbjct:   165 GVYLKSDIL 173

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0016020 "membrane" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP;IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0005840 "ribosome" evidence=IDA

GO:0006364 "rRNA processing" evidence=IGI;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0032544 "plastid translation" evidence=IMP

GO:0045727 "positive regulation of translation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IMP

GO:0005996 "monosaccharide metabolic process" evidence=IMP

GO:0010297 "heteropolysaccharide binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2100681 PPL1 "PsbP-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00029, P = 0.00029
 Identities = 34/125 (27%), Positives = 57/125 (45%)

Query:    93 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELXXXXXXRYK 152
             A+   GF    D  D Y+F YP  W +V   G D  Y+D     E+VSV L        +
Sbjct:    75 AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSK---Q 131

Query:   153 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWC 212
             ++++ GPPK+    ++++ L           +++ ++  S    D G+ YY  E + V  
Sbjct:   132 TIKEFGPPKQIAETLIKKVLAP-------PNQKTTLIDASEHDVD-GKTYYQFEFT-VQA 182

Query:   213 WNITQ 217
              N T+
Sbjct:   183 RNYTR 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      231       225   0.00077  113 3  11 22  0.47    32
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  173 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.57u 0.11s 18.68t   Elapsed:  00:00:01
  Total cpu time:  18.57u 0.11s 18.68t   Elapsed:  00:00:01
  Start:  Sat May 11 09:57:17 2013   End:  Sat May 11 09:57:18 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	2e-65
pfam01789	163	pfam01789, PsbP, PsbP	2e-38

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score =  203 bits (518), Expect = 2e-65
 Identities = 106/145 (73%), Positives = 121/145 (83%), Gaps = 4/145 (2%)

Query: 66  AVPRRNAM--ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGA 123
           AV RR +M   L++S  I S+     TA A   V FREYIDTFDGYSFKYPQNWIQVRGA
Sbjct: 76  AVGRRKSMMMGLLMSGLIVSEANL-PTAFASIPV-FREYIDTFDGYSFKYPQNWIQVRGA 133

Query: 124 GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR 183
           GADIF+RDP VLDEN+SVE SSPSSS+Y S+EDLG P+E G++VLRQYLTEFMSTRLGV+
Sbjct: 134 GADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVK 193

Query: 184 RESNILSTSSRVADDGRLYYLVEVS 208
           RE+NILSTSSRVADDG+LYY VEV+
Sbjct: 194 REANILSTSSRVADDGKLYYQVEVN 218

Length = 286

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score =  130 bits (330), Expect = 2e-38
 Identities = 46/112 (41%), Positives = 60/112 (53%), Gaps = 9/112 (8%)

Query: 98  GFREYIDTFDGYSFKYPQNWIQ-VRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVED 156
           GF+ Y+DT DGY F YP  W + V   G D+ + D    DENVSV +S       KS+ED
Sbjct: 9   GFQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDKK--KSLED 66

Query: 157 LGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVS 208
           LG P+E G ++LR  L    S      RE+ +L  S R   DG+ YY +E  
Sbjct: 67  LGSPEEVGERLLRGVLAPEGSG-----REAELLEASEREV-DGKTYYDLEYL 112

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.96
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.94
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.94
PLN03152	241	hypothetical protein; Provisional	99.68
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	85.79
PLN00016	378	RNA-binding protein; Provisional	81.42

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=2.5e-45  Score=325.73  Aligned_cols=161  Identities=68%  Similarity=1.004  Sum_probs=143.6

Q ss_pred             cccccccchhHHHHH--HHHHHHHhhhcCCCcccccccccCcccceecCCceeeecCCCceeeccccccEEeeCCCCCcc
Q 026900           60 MAATQFAVPRRNAMA--LILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDE  137 (231)
Q Consensus        60 ~g~~~~~~~RR~aL~--~~~sa~~~s~~~~~~~a~ae~~~gf~~y~D~~dGYsf~yP~~W~~v~~~G~dv~f~D~~~~~e  137 (231)
                      ..++.+.++||.+|+  ++++.++++..+.+ .|+|.++ ||++|+|+.|||+|+||.||++|.+.|+|++|||+++.+|
T Consensus        70 ~~~~~~~~~rr~~~~~~l~~~~~~~s~~~~~-~a~a~~~-~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~E  147 (286)
T PLN00059         70 DAKQVCAVGRRKSMMMGLLMSGLIVSEANLP-TAFASIP-VFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDE  147 (286)
T ss_pred             chhhhhhhhhhhhhHHHHHHHHHHHHhhcCc-hhhcCCc-ccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCcccc
Confidence            345678999999966  44454444444443 6777655 8999999999999999999999999999999999999999


Q ss_pred             ceEEEEeCCCCcCCCCcccCCChHHHHHHHHHHHhhhccccccCCcceeeEEecceeecCCCeeEEEEEEEEEecccCcc
Q 026900          138 NVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQ  217 (231)
Q Consensus       138 NVsV~Vsp~~~~~~~si~dlGsPeeV~~~L~k~~~~~~~st~~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~a~~n~  217 (231)
                      ||||+|+||+++++++|+|||+|+||||+|+++++++||+|++|++++++||++.+|++.||++||+|||.|++++++|+
T Consensus       148 NVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~  227 (286)
T PLN00059        148 NLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNE  227 (286)
T ss_pred             ceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCccccc
Confidence            99999999975568999999999999999999999999999999999999999999986799999999999999999999


Q ss_pred             eeehh
Q 026900          218 LLVTR  222 (231)
Q Consensus       218 l~~~~  222 (231)
                      |++|+
T Consensus       228 ~~~~~  232 (286)
T PLN00059        228 LAVMP  232 (286)
T ss_pred             ccccc
Confidence            99994

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=1.1e-44  Score=321.69  Aligned_cols=196  Identities=23%  Similarity=0.283  Sum_probs=159.0

Q ss_pred             CchhhhhhccccCccccccccccccccCccchhhhhhccCCCccccceeeccccccccccccccccchhHHHHHHHHHH-
Q 026900            1 MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVMAATQFAVPRRNAMALILSS-   79 (231)
Q Consensus         1 ma~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~~~~r~~~~~~~~~~v~as~~k~~~~~g~~~~~~~RR~aL~~~~sa-   79 (231)
                      ||+++||+||++++.+...++.+..+.          |.....++.+.+|.++.       .+.+.++||.+|++++++ 
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-------~~~~~~srr~~l~~~~ga~   63 (260)
T PLN00042          1 MASTACFLHQSALKSAAALASSSSASA----------RAVSASRPSQVVCRAQE-------EDNSAVSRRAALALLAGAA   63 (260)
T ss_pred             Ccchhhhhhcccccchhhhcccccccc----------cccCCCCCcceeeeccc-------cccccccHHHHHHHHHHHH
Confidence            999999999999976633322211221          12445555667777652       134678999999988886 


Q ss_pred             HHhhhcCCCccccccc---------ccCcccceecCCceeeecCCCcee---eccccccEEeeCCCCCccceEEEEeCCC
Q 026900           80 YIFSDFGFRNTALAQQ---------SVGFREYIDTFDGYSFKYPQNWIQ---VRGAGADIFYRDPYVLDENVSVELSSPS  147 (231)
Q Consensus        80 ~~~s~~~~~~~a~ae~---------~~gf~~y~D~~dGYsf~yP~~W~~---v~~~G~dv~f~D~~~~~eNVsV~Vsp~~  147 (231)
                      +..+.+.|+++||+|+         .+||.+|.  +|||+|+||++|++   .+++|+|++|+|+++.+|||||+|+|++
T Consensus        64 a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~  141 (260)
T PLN00042         64 AAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTD  141 (260)
T ss_pred             HhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCceEEeeccccccccEEEEEecCC
Confidence            4447899999999876         69999996  69999999999995   4578999999999999999999999996


Q ss_pred             CcCCCCcccCCChHH----HHHHHHHHHhhhccccccCCcc------eeeEEecceeecCCCeeEEEEEEEEEec----c
Q 026900          148 SSRYKSVEDLGPPKE----AGRKVLRQYLTEFMSTRLGVRR------ESNILSTSSRVADDGRLYYLVEVSCVWC----W  213 (231)
Q Consensus       148 ~~~~~si~dlGsPee----V~~~L~k~~~~~~~st~~~~~~------~a~ll~a~~r~~~~G~~YY~~Ey~v~s~----a  213 (231)
                         +++|+|||+|||    |+++|+||++++  +|+.++|+      +++||++++|+ .||++||+|||.+++.    .
T Consensus       142 ---k~sI~dlGsPee~l~~vgylL~kq~~a~--~t~s~~Gf~p~~vata~Lleas~re-~dGk~YY~lE~~~~~ad~d~~  215 (260)
T PLN00042        142 ---KKSITDYGSPEEFLSKVSYLLGKQAYSG--ETASEGGFDANAVATAAVLESSTQE-VGGKPYYYLSVLTRTADGDEG  215 (260)
T ss_pred             ---cCCHhhcCCHHHHHHHHHHHHHhhhccC--ccccccCcCcccccceeEEEeeeEE-eCCeEEEEEEEEEecCCCCCC
Confidence               799999999999    999999999988  67777675      88999999999 8999999999999875    2


Q ss_pred             cCcceeeh
Q 026900          214 NITQLLVT  221 (231)
Q Consensus       214 ~~n~l~~~  221 (231)
                      .||+|+..
T Consensus       216 ~RH~Lata  223 (260)
T PLN00042        216 GKHQLITA  223 (260)
T ss_pred             CceEEEEE
Confidence            56776653

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.96  E-value=1.3e-29  Score=213.54  Aligned_cols=121  Identities=41%  Similarity=0.623  Sum_probs=104.7

Q ss_pred             cccccCcccceecCCceeeecCCCceeeccccccEEeeCCCCCccceEEEEeCCCCcCCCCcccCCChHHHHHHHHHHHh
Q 026900           93 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYL  172 (231)
Q Consensus        93 ae~~~gf~~y~D~~dGYsf~yP~~W~~v~~~G~dv~f~D~~~~~eNVsV~Vsp~~~~~~~si~dlGsPeeV~~~L~k~~~  172 (231)
                      +++..||++|.|+++||+|+||.+|+++++.|+|++|+|+++..+||+|+|+|+..  .++|+|||+|++|+++|+++.+
T Consensus        17 ~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~--~~sl~~lGs~~~va~~l~~~~~   94 (175)
T PF01789_consen   17 AEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPK--DFSLEDLGSPEEVAERLLNGEL   94 (175)
T ss_dssp             TT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-ST--S-SGGGG-SHHHHHHHHHHHCC
T ss_pred             ccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCC--cCchhhcCCHHHHHHHHhhhhc
Confidence            45678999999999999999999999999999999999999999999999999984  4499999999999999999988


Q ss_pred             hhccccccCCcceeeEEecceeecCCCeeEEEEEEEEEecc--cCcceeeh
Q 026900          173 TEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCW--NITQLLVT  221 (231)
Q Consensus       173 ~~~~st~~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~a--~~n~l~~~  221 (231)
                      ..+     +++++++||++.+|+ .+|++||+|||.+++..  .||.|+.+
T Consensus        95 ~~~-----~~~~~a~li~a~~~~-~~g~~yY~~Ey~~~~~~~~~rh~l~~~  139 (175)
T PF01789_consen   95 ASP-----GSGREAELISASERE-VDGKTYYEYEYTVQSPNEGRRHNLAVV  139 (175)
T ss_dssp             CHC-----TSSEEEEEEEEEEEE-ETTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccc-----cCCcceEEEEeeeee-cCCccEEEEEEEeccCCCcccEEEEEE
Confidence            773     556999999999999 78999999999999864  56666543

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.94  E-value=1e-26  Score=207.90  Aligned_cols=149  Identities=25%  Similarity=0.330  Sum_probs=118.2

Q ss_pred             ccchhHHHHHHHHHHHHhhhcCCCccccc--------------cc-ccCcccceecC-------------CceeeecCCC
Q 026900           65 FAVPRRNAMALILSSYIFSDFGFRNTALA--------------QQ-SVGFREYIDTF-------------DGYSFKYPQN  116 (231)
Q Consensus        65 ~~~~RR~aL~~~~sa~~~s~~~~~~~a~a--------------e~-~~gf~~y~D~~-------------dGYsf~yP~~  116 (231)
                      ..++||.+|+.+++++..+.++++..++|              ++ ..||++|..+.             ..|+|+||.+
T Consensus        43 ~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~G  122 (262)
T PLN00066         43 TAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQG  122 (262)
T ss_pred             chhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCCC
Confidence            45799999997766544444555555442              22 47899999875             3599999999


Q ss_pred             ceeeccc-----cccEEeeCCCCCccceEEEEeCCC-----CcCCCCcccCCChHHHHHHHHHHHhhhccccccCCccee
Q 026900          117 WIQVRGA-----GADIFYRDPYVLDENVSVELSSPS-----SSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRES  186 (231)
Q Consensus       117 W~~v~~~-----G~dv~f~D~~~~~eNVsV~Vsp~~-----~~~~~si~dlGsPeeV~~~L~k~~~~~~~st~~~~~~~a  186 (231)
                      |.|+.++     |++++||+..+.++||+|+|+|+.     ..++++|+|||+||+|++.|++++++.+       .+++
T Consensus       123 W~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~-------~~e~  195 (262)
T PLN00066        123 WEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEP-------VEEG  195 (262)
T ss_pred             CeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCC-------cccc
Confidence            9999887     788888888899999999999985     1258999999999999999999988662       4689


Q ss_pred             eEEecceeecCCCeeEEEEEEE----EEecccCcceeeh
Q 026900          187 NILSTSSRVADDGRLYYLVEVS----CVWCWNITQLLVT  221 (231)
Q Consensus       187 ~ll~a~~r~~~~G~~YY~~Ey~----v~s~a~~n~l~~~  221 (231)
                      +||++++++ .||++||+|||.    +..+.++|+|..+
T Consensus       196 eLl~a~~re-~dGktYY~~E~~rH~LasaTV~~GrLYt~  233 (262)
T PLN00066        196 KVLSMEVAE-HSGRTYYQFELPPHTLVTATAAGNRVYIF  233 (262)
T ss_pred             ceeEeeeee-cCCcEEEEEEEeCceEEEEEEECCEEEEE
Confidence            999999998 899999999993    2334456666554

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.94  E-value=2.2e-26  Score=204.62  Aligned_cols=145  Identities=17%  Similarity=0.202  Sum_probs=107.7

Q ss_pred             cchhHHHHHHHHHHHHhhhcCCCcc-ccc----------ccccCcccceec-----------CCceeeecCCCceeeccc
Q 026900           66 AVPRRNAMALILSSYIFSDFGFRNT-ALA----------QQSVGFREYIDT-----------FDGYSFKYPQNWIQVRGA  123 (231)
Q Consensus        66 ~~~RR~aL~~~~sa~~~s~~~~~~~-a~a----------e~~~gf~~y~D~-----------~dGYsf~yP~~W~~v~~~  123 (231)
                      ...||+.|.+++-+.++.....+.+ |.-          ....||.-|.-.           ..||+|+||.+|++++++
T Consensus        42 ~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~Vs  121 (263)
T PLN00067         42 VIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRVA  121 (263)
T ss_pred             hhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCcccc
Confidence            3689999776644444443333211 110          113466666422           359999999999998886


Q ss_pred             ----c-----------ccEEeeCCCCCccceEEEEeCCCC---cCCCCcccCCChHHHHHHHHHHHhhhccccccCCcce
Q 026900          124 ----G-----------ADIFYRDPYVLDENVSVELSSPSS---SRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRE  185 (231)
Q Consensus       124 ----G-----------~dv~f~D~~~~~eNVsV~Vsp~~~---~~~~si~dlGsPeeV~~~L~k~~~~~~~st~~~~~~~  185 (231)
                          |           +|++|+|+.  ++||+|+|+|+..   .++++|+|||+||+|+++|++.+.++       ++++
T Consensus       122 ~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~-------~~~~  192 (263)
T PLN00067        122 NILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGN-------SYDP  192 (263)
T ss_pred             ccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcC-------CCCC
Confidence                4           899999954  6899999999831   24699999999999999999998864       4788


Q ss_pred             eeEEecceeecCCCeeEEEEEEEEEec-ccCcceee
Q 026900          186 SNILSTSSRVADDGRLYYLVEVSCVWC-WNITQLLV  220 (231)
Q Consensus       186 a~ll~a~~r~~~~G~~YY~~Ey~v~s~-a~~n~l~~  220 (231)
                      .+||++++|+ .||++||+|||.++.. ..||+|+.
T Consensus       193 ~eLLeAs~re-~dGktYY~~E~~tp~a~~gRHnLat  227 (263)
T PLN00067        193 DELLETSVEK-IGDQTYYKYVLETPFALTGSHNLAK  227 (263)
T ss_pred             cceEEeeeEe-eCCeEEEEEEEEecCCCCCceEEEE
Confidence            8999999999 7999999999998754 35555553

>PLN03152 hypothetical protein; Provisional

Probab=99.68  E-value=7.3e-17  Score=141.00  Aligned_cols=140  Identities=21%  Similarity=0.207  Sum_probs=92.4

Q ss_pred             ccchhHHHHHHHHHHHHhhhcCCC--ccccccc-------------ccCcccceecCCceeeecCCCceeecc-------
Q 026900           65 FAVPRRNAMALILSSYIFSDFGFR--NTALAQQ-------------SVGFREYIDTFDGYSFKYPQNWIQVRG-------  122 (231)
Q Consensus        65 ~~~~RR~aL~~~~sa~~~s~~~~~--~~a~ae~-------------~~gf~~y~D~~dGYsf~yP~~W~~v~~-------  122 (231)
                      +..+||+.+.-.++.++.++....  ..+++++             ...|-.|.  ++||+..||-.+..+--       
T Consensus        29 ~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~--g~gf~~~~pp~f~di~e~~~~~~g  106 (241)
T PLN03152         29 CGASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFY--GDGFSIRVPPSFEDIMEPEDYNAG  106 (241)
T ss_pred             ccccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhh--CCceEEeCCCChhhhcChhhcccc
Confidence            556777776655555555544332  2233333             23355554  89999999988874321       


Q ss_pred             ---------c-cccEEeeCCCCCccceEEEEeCCC-----CcCCCCcccCCChHHHHHHHHHHHhhhccccccCCcceee
Q 026900          123 ---------A-GADIFYRDPYVLDENVSVELSSPS-----SSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESN  187 (231)
Q Consensus       123 ---------~-G~dv~f~D~~~~~eNVsV~Vsp~~-----~~~~~si~dlGsPeeV~~~L~k~~~~~~~st~~~~~~~a~  187 (231)
                               + -..++|.-+ |..|||||+|+|++     ..+.++|+|||+|+|||+.|+     +...++ -+++.++
T Consensus       107 ~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~v-----P~g~~~-~saR~ie  179 (241)
T PLN03152        107 LSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFV-----PGGATL-YSARTIK  179 (241)
T ss_pred             cceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhC-----CCcccc-cccceee
Confidence                     1 125677754 89999999999985     113899999999999997665     310000 0244444


Q ss_pred             EEecceeecCCCeeEEEEEEEEEecccCcceeeh
Q 026900          188 ILSTSSRVADDGRLYYLVEVSCVWCWNITQLLVT  221 (231)
Q Consensus       188 ll~a~~r~~~~G~~YY~~Ey~v~s~a~~n~l~~~  221 (231)
                      +    +++ .|||+||+|||.++   .||+|+..
T Consensus       180 l----~~E-~dGKtYY~lEy~v~---~RH~LaTV  205 (241)
T PLN03152        180 V----KEE-EGIRTYYFYEFGRD---EQHVALVA  205 (241)
T ss_pred             e----eee-cCCceeEEEEEEeC---CcEEEEEE
Confidence            4    456 89999999999986   78877653

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=85.79  E-value=1.1  Score=37.45  Aligned_cols=45  Identities=16%  Similarity=0.447  Sum_probs=25.3

Q ss_pred             ccceecCCceeeecCCCceeeccccccEEeeCCCCCccceEEEEe
Q 026900          100 REYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELS  144 (231)
Q Consensus       100 ~~y~D~~dGYsf~yP~~W~~v~~~G~dv~f~D~~~~~eNVsV~Vs  144 (231)
                      ..|..++.=|+..||.+|.|.+-..--..|-|+..=+.|..+..-
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISay   46 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAY   46 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEE
T ss_pred             CcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEE
Confidence            457777778999999999998833344557778888999875444

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

>PLN00016 RNA-binding protein; Provisional

Probab=81.42  E-value=0.9  Score=42.01  Aligned_cols=62  Identities=16%  Similarity=0.170  Sum_probs=48.2

Q ss_pred             hhhhccccCccccccccccccccCccchhhhhhccCCCccccceeecccccccccc----cccccc
Q 026900            5 VMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVM----AATQFA   66 (231)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~~~~r~~~~~~~~~~v~as~~k~~~~~----g~~~~~   66 (231)
                      ++..|+.++++++++++.+.+.+..++...++.|+.+.+.......+...|+++|.    |++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLVt~~~~GatG~i   68 (378)
T PLN00016          3 SSSRLRSSSASSLLSSSSSSSISPALAARAQGSRRASQVAGAAAAAAVEKKKVLIVNTNSGGHAFI   68 (378)
T ss_pred             cchhcccccccccCCchhhhhhhHHhhhccccccccccchhhhhhcccccceEEEEeccCCCceeE
Confidence            34567788888888888888888888888888898888855444444456789999    988876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	231
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		4e-12
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		4e-07

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 98  GFREYIDTFDGYSFKYPQNWIQVRGAG-ADIFYRDPYVLDENVSVELXXXXXXRYKSVED 156
           G + Y+D++DGY F YP+ W+QV+     D+ + D     ENVSV +        KS+E+
Sbjct: 7   GLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAST--KSLEE 64
Query: 157 LGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVE 206
           LG P+E G ++LR  +    S      R S +++ +S+ ADD + YY++E
Sbjct: 65  LGSPEEVGDRLLRNIIAPSESG-----RSSALIAATSQKADD-KTYYILE 108

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 99  FREYIDTFDGYSFKYPQNWI--QVRGA--GADIFYRDPYVLDENVSVELXXXXXXRYKSV 154
            + Y DT DGY F YP  WI   V+GA  G D+ +RD    DEN+SV +        K++
Sbjct: 14  LQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD--KTL 71
Query: 155 EDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVE 206
            DLG   + G + ++              R++ +++  +R  +DG++YY +E
Sbjct: 72  TDLGTATDVGYRFMKTVNDASQGD-----RQAELINAEAR-DEDGQVYYTLE 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	9e-23
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	1e-21
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	1e-20
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	3e-20

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 87.2 bits (215), Expect = 1e-21
 Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 9/115 (7%)

Query: 93  AQQSVGFREYIDTFDGYSFKYPQNWIQVRG-AGADIFYRDPYVLDENVSVELSSPSSSRY 151
           +  + G + Y+D++DGY F YP+ W+QV+     D+ + D     ENVSV +++ +S+  
Sbjct: 2   SSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAST-- 59

Query: 152 KSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVE 206
           KS+E+LG P+E G ++LR  +    S      R S +++ +S+ A D + YY++E
Sbjct: 60  KSLEELGSPEEVGDRLLRNIIAPSESG-----RSSALIAATSQKA-DDKTYYILE 108

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 84.2 bits (207), Expect = 1e-20
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 93  AQQSVGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSS 149
            +    F+ Y    DG+  + P  W   +     G  + + D +    NV V ++     
Sbjct: 3   PKTDTDFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDK- 59

Query: 150 RYKSVEDLGPPKEAGRKVLRQYLTEFMS--------TRLGVRRESNILSTSSRVADDGRL 201
             KS+ D G P++   +V      +  S                +N+L TS+     G+ 
Sbjct: 60  --KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEV-GGKQ 116

Query: 202 YYLVEV 207
           YY + +
Sbjct: 117 YYYLSI 122

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 83.4 bits (205), Expect = 3e-20
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 12/115 (10%)

Query: 98  GFREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYVLDENVSVELSSPSSSRYKS 153
             + Y DT DGY F YP  WI V       G D+ +RD    DEN+SV +S   S   K+
Sbjct: 13  SLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD--KT 70

Query: 154 VEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVS 208
           + DLG   + G + ++      ++      R++ +++  +R  +DG++YY +E  
Sbjct: 71  LTDLGTATDVGYRFMKT-----VNDASQGDRQAELINAEARD-EDGQVYYTLEYR 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	99.96
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.95
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.92

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=99.96  E-value=1.2e-29  Score=214.37  Aligned_cols=119  Identities=24%  Similarity=0.377  Sum_probs=92.6

Q ss_pred             ccccCcccceecCCceeeecCCCceeec---cccccEEeeCCCCCccceEEEEeCCCCcCCCCcccCCChHH----HHHH
Q 026900           94 QQSVGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKE----AGRK  166 (231)
Q Consensus        94 e~~~gf~~y~D~~dGYsf~yP~~W~~v~---~~G~dv~f~D~~~~~eNVsV~Vsp~~~~~~~si~dlGsPee----V~~~  166 (231)
                      .+++||++|.  +|||+|+||.+|+++.   ++|+|++|+|+++..+||+|+|+|++   +++|+|||+|++    |+++
T Consensus         4 ~~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~---~~si~dlGspe~~~~~v~~~   78 (177)
T 1v2b_A            4 KTDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSITDFGSPEQFLSQVDYL   78 (177)
T ss_dssp             ---CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECS---CSSGGGGCSHHHHHHHTGGG
T ss_pred             CCCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCC---CCChhHCCCHHHHHHHHHHH
Confidence            3468999998  9999999999999644   66999999999999999999999996   699999999999    6889


Q ss_pred             HHHHHhhhccccc------cCCcceeeEEecceeecCCCeeEEEEEEEEEecc----cCcceee
Q 026900          167 VLRQYLTEFMSTR------LGVRRESNILSTSSRVADDGRLYYLVEVSCVWCW----NITQLLV  220 (231)
Q Consensus       167 L~k~~~~~~~st~------~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~a----~~n~l~~  220 (231)
                      |+++++++  .+.      ++++++++||++++|+ .||++||+|||.+++..    .||.|+.
T Consensus        79 l~~~~~~~--~~~~~~gf~~~~~~~a~ll~a~~r~-~~G~~YY~~E~~~~~~~g~e~~rH~l~~  139 (177)
T 1v2b_A           79 LGRQAYSG--KTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILTRTADGNEGGKHQLVT  139 (177)
T ss_dssp             C--------------------CCCEEEEEEEEEEE-ETTEEEEEEEEEEEC-----CCEEEEEE
T ss_pred             HHHHhhcc--cccccCCcccCcccceEEEEeEEEE-eCCeEEEEEEEEEecCCCCccccEEEEE
Confidence            99999886  222      3455999999999999 79999999999999764    5666654

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.95  E-value=2e-28  Score=202.49  Aligned_cols=111  Identities=33%  Similarity=0.656  Sum_probs=101.7

Q ss_pred             cccCcccceecCCceeeecCCCceeeccc-cccEEeeCCCCCccceEEEEeCCCCcCCCCcccCCChHHHHHHHHHHHhh
Q 026900           95 QSVGFREYIDTFDGYSFKYPQNWIQVRGA-GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLT  173 (231)
Q Consensus        95 ~~~gf~~y~D~~dGYsf~yP~~W~~v~~~-G~dv~f~D~~~~~eNVsV~Vsp~~~~~~~si~dlGsPeeV~~~L~k~~~~  173 (231)
                      .+.||++|.|+++||+|+||.+|+++.++ |++++|+|+++..+||+|+|+|+..  .++|+|||+||+|+++|++++++
T Consensus         4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~--~~~l~~~G~~e~va~~l~~~~~~   81 (165)
T 2xb3_A            4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAS--TKSLEELGSPEEVGDRLLRNIIA   81 (165)
T ss_dssp             --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSS--CCCSGGGCCHHHHHHHHHHHTTS
T ss_pred             CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCC--CCChHHcCCHHHHHHHHHHHhhc
Confidence            36799999999999999999999999998 9999999999999999999999973  69999999999999999999887


Q ss_pred             hccccccCCcceeeEEecceeecCCCeeEEEEEEEEEecc
Q 026900          174 EFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCW  213 (231)
Q Consensus       174 ~~~st~~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~a  213 (231)
                      +     ++++++++||++.+|+ .+|++||+|||.+++..
T Consensus        82 ~-----~~~~~~~~l~~a~~r~-~~G~~yY~~Ey~~~~~~  115 (165)
T 2xb3_A           82 P-----SESGRSSALIAATSQK-ADDKTYYILEYAVTLPG  115 (165)
T ss_dssp             C-----TTSSCEEEEEEEEEEE-ETTEEEEEEEEEEECC-
T ss_pred             C-----CCCCcceEEEEeeeee-cCCceEEEEEEEEecCC
Confidence            6     4678999999999997 89999999999998865

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.92  E-value=2.4e-30  Score=215.98  Aligned_cols=119  Identities=30%  Similarity=0.521  Sum_probs=107.7

Q ss_pred             ccccCcccceecCCceeeecCCCceeeccc----cccEEeeCCCCCccceEEEEeCCCCcCCCCcccCCChHHHHHHHHH
Q 026900           94 QQSVGFREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLR  169 (231)
Q Consensus        94 e~~~gf~~y~D~~dGYsf~yP~~W~~v~~~----G~dv~f~D~~~~~eNVsV~Vsp~~~~~~~si~dlGsPeeV~~~L~k  169 (231)
                      +.+.||++|.|+.|||+|+||++|++++++    |+|++|+|+++..+||+|+|+|++.  .++|+|||+||+|+++|++
T Consensus         9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~--~~si~d~G~pe~va~~l~~   86 (170)
T 2lnj_A            9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPS--DKTLTDLGTATDVGYRFMK   86 (170)
Confidence            567899999999999999999999999988    9999999999999999999999972  5999999999999999999


Q ss_pred             HHhhhccccccCCcceeeEEecceeecCCCeeEEEEEEEEEec--ccCcceee
Q 026900          170 QYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWC--WNITQLLV  220 (231)
Q Consensus       170 ~~~~~~~st~~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~--a~~n~l~~  220 (231)
                      +++++     ++++++++||++.+|+ .||++||+|||.+++.  ..||.|++
T Consensus        87 ~~~~~-----~~~~~~a~li~a~~~~-~~G~~yY~~Ey~~~~~~~~~rh~l~~  133 (170)
T 2lnj_A           87 TVNDA-----SQGDRQAELINAEARD-EDGQVYYTLEYRVLVGDNVERHDLAS  133 (170)
Confidence            99987     4778999999999998 8999999999999885  34555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	231
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	4e-20

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 82.1 bits (202), Expect = 4e-20
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 17/121 (14%)

Query: 98  GFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSV 154
            F+ Y    DG+  + P  W   +     G  + + D +    NV V ++       KS+
Sbjct: 2   DFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSI 56

Query: 155 EDLGPPKEAGRKVLRQYLTEFMS--------TRLGVRRESNILSTSSRVADDGRLYYLVE 206
            D G P++   +V      +  S                +N+L TS+     G+ YY + 
Sbjct: 57  TDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLS 115

Query: 207 V 207
           +
Sbjct: 116 I 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.93
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	91.8

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.93  E-value=3.7e-27  Score=194.67  Aligned_cols=119  Identities=24%  Similarity=0.367  Sum_probs=90.2

Q ss_pred             cCcccceecCCceeeecCCCceeec---cccccEEeeCCCCCccceEEEEeCCCCcCCCCcccCCChHHHHHHH----HH
Q 026900           97 VGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKV----LR  169 (231)
Q Consensus        97 ~gf~~y~D~~dGYsf~yP~~W~~v~---~~G~dv~f~D~~~~~eNVsV~Vsp~~~~~~~si~dlGsPeeV~~~L----~k  169 (231)
                      ++|++|.|  |||+|+||++|+++.   .+|+|++|+|+++..+||+|+|+|++   +++|++||+|+++++.+    ++
T Consensus         1 ~~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~---~~sl~~~G~p~~~~~~v~~~l~~   75 (171)
T d1v2ba_           1 TDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSITDFGSPEQFLSQVDYLLGR   75 (171)
T ss_dssp             CCEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECS---CSSGGGGCSHHHHHHHTGGGC--
T ss_pred             CCcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCC---CcchhhccChHHHHHHHHHHHhh
Confidence            47999985  899999999998654   55899999999999999999999986   89999999999977665    44


Q ss_pred             HHhhhccc----cccCCcceeeEEecceeecCCCeeEEEEEEEEEecc----cCcceeeh
Q 026900          170 QYLTEFMS----TRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCW----NITQLLVT  221 (231)
Q Consensus       170 ~~~~~~~s----t~~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~a----~~n~l~~~  221 (231)
                      +.+.+++.    ++.+++++++|+++++++ .||++||+|||.++++.    .||.|+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~-~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~  134 (171)
T d1v2ba_          76 QAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILTRTADGNEGGKHQLVTA  134 (171)
T ss_dssp             ----------------CCCEEEEEEEEEEE-ETTEEEEEEEEEEEC-----CCEEEEEEE
T ss_pred             hhhcccccccccccccccceeEEEEeeeee-cCCEEEEEEEEEEecCCCCCcccEEEEEE
Confidence            44443211    345677999999999999 79999999999998763    34555443

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.80  E-value=0.85  Score=33.71  Aligned_cols=91  Identities=8%  Similarity=0.021  Sum_probs=47.8

Q ss_pred             cccceecCCceeeecCCCceeeccccccEEeeCCCCC-ccceEEEEeCCCCcCCCCcccCCChHHHHHHHHHHHhhhccc
Q 026900           99 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVL-DENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMS  177 (231)
Q Consensus        99 f~~y~D~~dGYsf~yP~~W~~v~~~G~dv~f~D~~~~-~eNVsV~Vsp~~~~~~~si~dlGsPeeV~~~L~k~~~~~~~s  177 (231)
                      +..|.  .+.=+|.+|.+|..-.+  ..+.+.|.... .-||.|...+..        +=.++++..++.++++-..   
T Consensus         3 ~~~Y~--~~Egs~~lP~gw~d~t~--ni~~~~~~~~~~~~~lvIsr~~l~--------~~~~l~~~~~~~~~~l~~~---   67 (144)
T d1tu1a_           3 MTLYR--LHEADLEIPDAWQDQSI--NIFKLPASGPAREASFVISRDASQ--------GDAPFADYVARQLENAEKQ---   67 (144)
T ss_dssp             EEEEE--CSSEEEEEETTSEECCB--EEEEECCBTTBCCEEEEEEEECCC--------TTSCHHHHHHHHHHHHHHH---
T ss_pred             CceeE--EcCEEEeCCCCceeCcc--eEEEecCCCCCcceEEEEEeecCC--------CCCCHHHHHHHHHHHHHhh---
Confidence            34454  33348999999975432  23344454332 235666665554        2336677777666655432   


Q ss_pred             cccCCcceeeEEecceeecCCCeeEEEEEEEEE
Q 026900          178 TRLGVRRESNILSTSSRVADDGRLYYLVEVSCV  210 (231)
Q Consensus       178 t~~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~  210 (231)
                           ...-++++...-+ .+|.+-+.+||.-+
T Consensus        68 -----l~~~~~~~~~~~~-l~g~pa~~~~~t~~   94 (144)
T d1tu1a_          68 -----LPGFKLHKRWDIN-IHGHAAVLLDYQWQ   94 (144)
T ss_dssp             -----STTCEEEEEEEEE-ETTEEEEEEEEEEE
T ss_pred             -----CCCcEEEeeEecc-cCCCcEEEEEEEEe
Confidence                 1123444443333 55666666665544