Citrus Sinensis ID: 026944

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
MECKRQFSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF
cccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHHccccEEEEEEcccccEEEEEEEEEEEcccccEEccccccccccccccEEcccc
cccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcHHHHcccccccccccccccccccEEEEEEEEcccccccEcccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHccHHHHHHHccccccccEEEHHHHHHHHHHHHccccEEEEEEcccccEEEEEEEEEEEcccccEcccccccccccccccEEcccc
MECKRQFSIILIKLFFIQYLSVLCAARNFDFFYFVlqwpgsycdtaksccypttgkpaadfgihglwpnyndgsypsncdpnapfdqsqisDLRSsmlknwptlacpsgngitfwshewekhgtcsesvLNQHQYFQTALNLKNQINLLQALRtagivpdgssysLESIKDAIKEasgfspwiecnvdesgnsqLYQIYLCVdtsasnfincpvfpngkkcgsqiefppf
MECKRQFSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF
MECKRQFSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF
*****QFSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSY*********************MLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKK**********
******F***LIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPV*******G*QIEFPPF
MECKRQFSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF
****RQFSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MECKRQFSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query230 2.2.26 [Sep-21-2011]
P80022230 Extracellular ribonucleas N/A no 0.995 0.995 0.718 2e-95
P42813230 Ribonuclease 1 OS=Arabido yes no 0.969 0.969 0.683 7e-91
P80196237 Intracellular ribonucleas N/A no 0.952 0.924 0.645 8e-83
P42815222 Ribonuclease 3 OS=Arabido no no 0.956 0.990 0.606 6e-80
P23540191 Ribonuclease MC OS=Momord N/A no 0.778 0.937 0.394 1e-30
P42814259 Ribonuclease 2 OS=Arabido no no 0.860 0.764 0.368 8e-30
Q7M438223 Ribonuclease DdI OS=Dicty yes no 0.904 0.932 0.339 5e-28
P83618238 Ribonuclease-like storage N/A no 0.778 0.752 0.353 1e-26
Q40381218 Ribonuclease S-7 OS=Nicot N/A no 0.891 0.940 0.330 5e-25
Q7M456213 Ribonuclease Oy OS=Crasso N/A no 0.786 0.849 0.341 9e-24
>sp|P80022|RNLE_SOLLC Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2 Back     alignment and function desciption
 Score =  348 bits (893), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/231 (71%), Positives = 192/231 (83%), Gaps = 2/231 (0%)

Query: 1   MECKRQFSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAAD 60
           M     FS+ LI L   Q LSVL AA++FDFFYFV QWPGSYCDT +SCCYPTTGKPAAD
Sbjct: 1   MASNSAFSLFLILLIITQCLSVLNAAKDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAAD 60

Query: 61  FGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWE 120
           FGIHGLWPN NDG+YPSNCDPN+P+DQSQISDL SSM +NWPTLACPSG+G TFWSHEWE
Sbjct: 61  FGIHGLWPNNNDGTYPSNCDPNSPYDQSQISDLISSMQQNWPTLACPSGSGSTFWSHEWE 120

Query: 121 KHGTCSESVL-NQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGF 179
           KHGTC+ESVL NQH YF+ AL+LKNQI+LL  L+ A I PDG SY L +I++AIK A G+
Sbjct: 121 KHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQGADIHPDGESYDLVNIRNAIKSAIGY 180

Query: 180 SPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF 230
           +PWI+CNVD+SGNSQLYQ+Y+CVD S S+ I CP+FP G KCG+ IEFP F
Sbjct: 181 TPWIQCNVDQSGNSQLYQVYICVDGSGSSLIECPIFPGG-KCGTSIEFPTF 230
Probably involved in plant phosphate-starvation rescue system.
Solanum lycopersicum (taxid: 4081)
EC: 3EC: .EC: 1EC: .EC: 2EC: 7EC: .EC: 1
>sp|P42813|RNS1_ARATH Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1 Back     alignment and function description
>sp|P80196|RNLX_SOLLC Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2 Back     alignment and function description
>sp|P42815|RNS3_ARATH Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1 Back     alignment and function description
>sp|P23540|RNMC_MOMCH Ribonuclease MC OS=Momordica charantia PE=1 SV=1 Back     alignment and function description
>sp|P42814|RNS2_ARATH Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1 Back     alignment and function description
>sp|Q7M438|RNDI_DICDI Ribonuclease DdI OS=Dictyostelium discoideum GN=ddiA PE=1 SV=3 Back     alignment and function description
>sp|P83618|RN28_PANGI Ribonuclease-like storage protein OS=Panax ginseng PE=1 SV=2 Back     alignment and function description
>sp|Q40381|RNS7_NICAL Ribonuclease S-7 OS=Nicotiana alata PE=1 SV=1 Back     alignment and function description
>sp|Q7M456|RNOY_CRAGI Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
357487003228 Ribonuclease T2 [Medicago truncatula] gi 0.956 0.964 0.744 2e-94
255562874226 ribonuclease t2, putative [Ricinus commu 0.895 0.911 0.777 4e-94
350535451230 extracellular ribonuclease LE precursor 0.995 0.995 0.718 1e-93
357487007230 Ribonuclease T2 [Medicago truncatula] gi 0.986 0.986 0.721 5e-93
356499815227 PREDICTED: extracellular ribonuclease LE 0.965 0.977 0.730 1e-92
3860325229 ribonuclease T2 [Cicer arietinum] 0.973 0.978 0.709 3e-92
532754231 RNase NE [Nicotiana alata] 0.995 0.991 0.704 1e-91
9081845226 S-like ribonuclease [Prunus dulcis] gi|1 0.965 0.982 0.762 2e-91
31621002229 ribonuclease NW [Nicotiana glutinosa] 0.995 1.0 0.704 2e-91
9957752227 S-like ribonuclease [Prunus dulcis] 0.965 0.977 0.686 3e-91
>gi|357487003|ref|XP_003613789.1| Ribonuclease T2 [Medicago truncatula] gi|355515124|gb|AES96747.1| Ribonuclease T2 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 166/223 (74%), Positives = 194/223 (86%), Gaps = 3/223 (1%)

Query: 10  ILIKLFFIQYLSVLCAAR--NFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLW 67
           +LIKL  +  ++VLCA++  +FDFFYFV QWPGSYCD+ KSCCYPTTGKPAADFGIHGLW
Sbjct: 7   VLIKLLLLLNVTVLCASQSQDFDFFYFVQQWPGSYCDSKKSCCYPTTGKPAADFGIHGLW 66

Query: 68  PNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSE 127
           PNY DG+YPSNCDPN  FD SQISDL+S++ +NWPTLACPSG+GI FW+HEWEKHGTCSE
Sbjct: 67  PNYKDGTYPSNCDPNNAFDPSQISDLKSNLQQNWPTLACPSGDGIQFWTHEWEKHGTCSE 126

Query: 128 SVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNV 187
           SVL QH YF+T LNL+ + NLLQAL +AG+ PDG+SYSL SIK AI+ A GF+P+IECNV
Sbjct: 127 SVLKQHDYFETTLNLRQKANLLQALTSAGVQPDGNSYSLSSIKGAIQNAVGFAPFIECNV 186

Query: 188 DESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF 230
           D SGNSQLYQ+YLCVDTS SNFI+CPVFP+G KCGS+IEFP F
Sbjct: 187 DSSGNSQLYQVYLCVDTSGSNFIDCPVFPHG-KCGSEIEFPTF 228

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255562874|ref|XP_002522442.1| ribonuclease t2, putative [Ricinus communis] gi|223538327|gb|EEF39934.1| ribonuclease t2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|350535451|ref|NP_001234195.1| extracellular ribonuclease LE precursor [Solanum lycopersicum] gi|1710615|sp|P80022.2|RNLE_SOLLC RecName: Full=Extracellular ribonuclease LE; Short=RNase LE; Flags: Precursor gi|895855|emb|CAA55895.1| ribonuclease [Solanum lycopersicum] gi|4582638|emb|CAB40353.1| ribonuclease T2 [Solanum lycopersicum] gi|31338465|emb|CAD60451.1| ribonuclease T2 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|357487007|ref|XP_003613791.1| Ribonuclease T2 [Medicago truncatula] gi|355515126|gb|AES96749.1| Ribonuclease T2 [Medicago truncatula] gi|388521185|gb|AFK48654.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356499815|ref|XP_003518732.1| PREDICTED: extracellular ribonuclease LE-like [Glycine max] Back     alignment and taxonomy information
>gi|3860325|emb|CAA10130.1| ribonuclease T2 [Cicer arietinum] Back     alignment and taxonomy information
>gi|532754|gb|AAA21135.1| RNase NE [Nicotiana alata] Back     alignment and taxonomy information
>gi|9081845|gb|AAF82615.1|AF157011_1 S-like ribonuclease [Prunus dulcis] gi|11141363|gb|AAG31930.1|AF202030_1 RNase PD2 [Prunus dulcis] Back     alignment and taxonomy information
>gi|31621002|dbj|BAC77613.1| ribonuclease NW [Nicotiana glutinosa] Back     alignment and taxonomy information
>gi|9957752|gb|AAG09465.1|AF227522_1 S-like ribonuclease [Prunus dulcis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
TAIR|locus:2056755230 RNS1 "ribonuclease 1" [Arabido 0.965 0.965 0.702 2.2e-89
TAIR|locus:2035871228 AT1G14220 [Arabidopsis thalian 0.956 0.964 0.642 9.4e-82
TAIR|locus:2200665222 RNS3 "ribonuclease 3" [Arabido 0.947 0.981 0.611 7.9e-78
TAIR|locus:2035865247 AT1G14210 [Arabidopsis thalian 0.947 0.882 0.493 1.7e-57
UNIPROTKB|Q940D3252 Q940D3 "RNase S-like protein" 0.865 0.789 0.357 1.9e-37
TAIR|locus:2063964259 RNS2 "ribonuclease 2" [Arabido 0.860 0.764 0.382 2.3e-32
DICTYBASE|DDB_G0281293223 ddiA "ribonuclease T2" [Dictyo 0.813 0.838 0.372 2.6e-31
DICTYBASE|DDB_G0295845236 DDB_G0295845 "ribonuclease T2" 0.817 0.796 0.354 1.5e-28
UNIPROTKB|P83618238 P83618 "Ribonuclease-like stor 0.869 0.840 0.338 1.3e-27
UNIPROTKB|E1C5F2266 RNASET2 "Uncharacterized prote 0.765 0.661 0.343 7.8e-23
TAIR|locus:2056755 RNS1 "ribonuclease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 158/225 (70%), Positives = 181/225 (80%)

Query:     8 SIILIKLFFI--QYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHG 65
             S+ LI L  I     S   ++ +FDFFYFV QWPGSYCDT K CCYP +GKPAADFGIHG
Sbjct:     7 SLCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHG 66

Query:    66 LWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTC 125
             LWPNY DG+YPSNCD + PFD S ISDL +SM K+WPTLACPSG+G  FW HEWEKHGTC
Sbjct:    67 LWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTC 126

Query:   126 SESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIEC 185
             SESV++QH+YFQTALNLK + NLL AL  AGI PDG SYSLESI+D+IKE+ GF+PW+EC
Sbjct:   127 SESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGFTPWVEC 186

Query:   186 NVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF 230
             N D SGNSQLYQ+YLCVD S S  I CPVFP+GK CG++IEFP F
Sbjct:   187 NRDGSGNSQLYQVYLCVDRSGSGLIECPVFPHGK-CGAEIEFPSF 230
GO:0003723 "RNA binding" evidence=IEA
GO:0004521 "endoribonuclease activity" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM;IDA
GO:0033897 "ribonuclease T2 activity" evidence=IEA
GO:0009611 "response to wounding" evidence=IEP
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IEP
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0006865 "amino acid transport" evidence=RCA
GO:0015824 "proline transport" evidence=RCA
GO:0004540 "ribonuclease activity" evidence=IDA
GO:0007568 "aging" evidence=IEP
GO:0016036 "cellular response to phosphate starvation" evidence=IEP
GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=IMP
TAIR|locus:2035871 AT1G14220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200665 RNS3 "ribonuclease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035865 AT1G14210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q940D3 Q940D3 "RNase S-like protein" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
TAIR|locus:2063964 RNS2 "ribonuclease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281293 ddiA "ribonuclease T2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0295845 DDB_G0295845 "ribonuclease T2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P83618 P83618 "Ribonuclease-like storage protein" [Panax ginseng (taxid:4054)] Back     alignment and assigned GO terms
UNIPROTKB|E1C5F2 RNASET2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P42813RNS1_ARATH3, ., 1, ., 2, 7, ., 10.68390.96950.9695yesno
P80196RNLX_SOLLC3, ., 1, ., 2, 7, ., 10.64570.95210.9240N/Ano
Q7M438RNDI_DICDI3, ., 1, ., 2, 7, ., 10.33920.90430.9327yesno
P80022RNLE_SOLLC3, ., 1, ., 2, 7, ., 10.71860.99560.9956N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.27.10.979
3rd Layer3.1.270.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.1125.1
hypothetical protein (204 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
cd01061195 cd01061, RNase_T2_euk, Ribonuclease T2 (RNase T2) 3e-80
pfam00445182 pfam00445, Ribonuclease_T2, Ribonuclease T2 family 9e-75
cd00374195 cd00374, RNase_T2, Ribonuclease T2 (RNase T2) is a 1e-73
cd01062184 cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) 2e-18
COG3719249 COG3719, Rna, Ribonuclease I [Translation, ribosom 1e-13
>gnl|CDD|238512 cd01061, RNase_T2_euk, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information 
 Score =  238 bits (608), Expect = 3e-80
 Identities = 92/201 (45%), Positives = 123/201 (61%), Gaps = 8/201 (3%)

Query: 29  FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQS 88
           FD+   VLQWP +YC T   CC P    P   F IHGLWP+   G+YP  CD ++ FD  
Sbjct: 1   FDYLQLVLQWPDTYCSTGPCCCRP---PPPDSFTIHGLWPDNCSGTYPQFCDSSSNFDSI 57

Query: 89  QISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVL-NQHQYFQTALNLKNQIN 147
            ISDL + + K WP L  P  N  +FW HEW KHGTCS ++L NQ+ YF TAL LK++++
Sbjct: 58  LISDLLNELNKYWPDLTGPKNN-QSFWEHEWNKHGTCSSTLLYNQYDYFDTALKLKDKLD 116

Query: 148 LLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSAS 207
           LL+ L  AGIVP   +Y+L  I++AIK A+G +P I+C+ D  G  +L +I++C D    
Sbjct: 117 LLKILAKAGIVPSTQTYTLSDIQNAIKAATGVTPVIKCSKDP-GKGELNEIWICFDKKGG 175

Query: 208 NFINCPVFPNGKKC-GSQIEF 227
            FI+CP  P    C    I+F
Sbjct: 176 EFIDCPR-PPKSTCPDDGIKF 195

This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members. Length = 195
>gnl|CDD|215923 pfam00445, Ribonuclease_T2, Ribonuclease T2 family Back     alignment and domain information
>gnl|CDD|238220 cd00374, RNase_T2, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>gnl|CDD|238513 cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>gnl|CDD|226242 COG3719, Rna, Ribonuclease I [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 230
KOG1642263 consensus Ribonuclease, T2 family [RNA processing 100.0
cd01061195 RNase_T2_euk Ribonuclease T2 (RNase T2) is a wides 100.0
cd00374195 RNase_T2 Ribonuclease T2 (RNase T2) is a widesprea 100.0
PF00445189 Ribonuclease_T2: Ribonuclease T2 family; InterPro: 100.0
cd01062184 RNase_T2_prok Ribonuclease T2 (RNase T2) is a wide 100.0
PRK10095268 ribonuclease I; Provisional 100.0
COG3719249 Rna Ribonuclease I [Translation, ribosomal structu 100.0
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 81.52
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=5e-62  Score=406.69  Aligned_cols=204  Identities=58%  Similarity=1.166  Sum_probs=182.7

Q ss_pred             cCCCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeecCCCCCCCCCCCCCCCCCCCCchhhhHHHHhhccCCCC
Q 026944           25 AARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTL  104 (230)
Q Consensus        25 ~~~~fD~~~L~l~Wpp~~C~~~~~~C~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~d~~~i~~l~~~L~~~Wp~~  104 (230)
                      ...+||||+|+++||.++|...+.||.+..|.++ .||||||||++..|+||++|+++.+||.++|++++.+|+.+||++
T Consensus        28 ~~~~fd~f~fvqqWP~~~Cd~~~~~C~~~~G~~a-~ftIHGLWP~~~~G~~P~~Cn~s~~Fd~~~isdl~~~L~~~Wp~L  106 (263)
T KOG1642|consen   28 SEEDFDFFYFVQQWPGAYCDSQRTCCYPPSGKPA-DFTIHGLWPDYNHGSWPQNCNRSSQFDDSKISDLEDSLEKEWPDL  106 (263)
T ss_pred             ccCCCCEEEEEEecCCccccCCccccCCCCCCcc-ceEEeeeccCCCCCCCcccCCCcccCChHHccchhhhHHhhcccc
Confidence            3478999999999999999998899988776555 999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCC--cccccccccceeecccCcC---ChHHHHHHHHHHHhhcCHHHHHHHCCCCCCCCcccHHHHHHHHHHHhCC
Q 026944          105 ACPSGNG--ITFWSHEWEKHGTCSESVL---NQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGF  179 (230)
Q Consensus       105 ~~~~~~~--~~fw~hEW~KHGtC~~~~~---~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~  179 (230)
                      ++++.++  ++||+|||+|||||+.+++   +|.+||+++++|++++|+..+|.++||.|+.+.|++++|++||++++|.
T Consensus       107 ~~~s~n~g~~~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l~~I~nAi~~~~G~  186 (263)
T KOG1642|consen  107 YCPSPNGGHESFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSLADIKNAIKEAIGK  186 (263)
T ss_pred             ccCCCCCccchhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeHHHHHHHHHHHhCC
Confidence            9876433  8899999999999999887   9999999999999999999999999999988899999999999999999


Q ss_pred             CceEEeeeCCCCC-ceEEEEEEEEeCC--CCceecCCC-CCCCCCCCCCeecCCC
Q 026944          180 SPWIECNVDESGN-SQLYQIYLCVDTS--ASNFINCPV-FPNGKKCGSQIEFPPF  230 (230)
Q Consensus       180 ~p~l~C~~~~~~~-~~L~Ev~iC~d~~--~~~~i~Cp~-~~~~~~C~~~i~~p~f  230 (230)
                      +|.+.|.++.+++ .+|.||++|+.|+  +...+.||. .+++. |+..+.||.|
T Consensus       187 ~p~I~C~rd~~~nv~~l~qI~lCl~kd~~~~d~~~~~~~~P~g~-~~~~~~~ps~  240 (263)
T KOG1642|consen  187 TPGIECLRDSKHNVSQLGQIRLCLLKDFSPRDCIECPTEFPRGS-CPTFIQFPSF  240 (263)
T ss_pred             CCceEeccCcccCceEeeeEEEEeecCcccccccCCCCcccCCc-ccccccCCCC
Confidence            9999999987777 7899999999655  334455552 23455 9999999976

>cd01061 RNase_T2_euk Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3 Back     alignment and domain information
>cd01062 RNase_T2_prok Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>PRK10095 ribonuclease I; Provisional Back     alignment and domain information
>COG3719 Rna Ribonuclease I [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
1dix_A208 Crystal Structure Of Rnase Le Length = 208 1e-90
1iyb_A208 Crystal Structure Of The Nicotiana Glutinosa Ribonu 5e-90
1vcz_A217 Crystal Structure Of The Rnase Nt In Complex With 5 9e-79
1j1f_A191 Crystal Structure Of The Rnase Mc1 Mutant N71t In C 1e-31
1ucg_A190 Crystal Structure Of Ribonuclease Mc1 N71t Mutant L 2e-31
1bk7_A190 Ribonuclease Mc1 From The Seeds Of Bitter Gourd Len 2e-31
1j1g_A190 Crystal Structure Of The Rnase Mc1 Mutant N71s In C 1e-30
1v9h_A197 Crystal Structure Of The Rnase Mc1 Mutant Y101a In 3e-30
1jy5_A212 Rnase-Related Protein From Calystegia Sepium Length 2e-27
1ioo_A196 Crystal Structure Of Nicotiana Alata Gemetophytic S 2e-23
1sgl_A209 The Three-Dimensional Structure And X-Ray Sequence 1e-22
3t0o_A238 Crystal Structure Analysis Of Human Rnase T2 Length 1e-21
1iqq_A200 Crystal Structure Of Japanese Pear S3-Rnase Length 2e-19
1bol_A222 The Crystal Structure Of Ribonuclease Rh From Rhizo 2e-17
3d3z_A247 Crystal Structure Of Actibind A T2 Rnase Length = 2 1e-14
3tbj_A237 The 1.7a Crystal Structure Of Actibind A T2 Ribonuc 1e-14
>pdb|1DIX|A Chain A, Crystal Structure Of Rnase Le Length = 208 Back     alignment and structure 
Iteration: 1

 Score =  328 bits (841), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 153/207 (73%), Positives = 179/207 (86%), Gaps = 2/207 (0%)
Query: 25  AARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAP 84
            +++FDFFYFV QWPGSYCDT +SCCYPTTGKPAADFGIHGLWPN NDG+YPSNCDPN+P
Sbjct: 3   GSKDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPNNNDGTYPSNCDPNSP 62
Query: 85  FDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVL-NQHQYFQTALNLK 143
           +DQSQISDL SSM +NWPTLACPSG+G TFWSHEWEKHGTC+ESVL NQH YF+ AL+LK
Sbjct: 63  YDQSQISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLK 122
Query: 144 NQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVD 203
           NQI+LL  L+ A I PDG SY L +I++AIK A G++PWI+CNVD+SGNSQLYQ+Y+CVD
Sbjct: 123 NQIDLLSILQGADIHPDGESYDLVNIRNAIKSAIGYTPWIQCNVDQSGNSQLYQVYICVD 182
Query: 204 TSASNFINCPVFPNGKKCGSQIEFPPF 230
            S S+ I CP+FP G KCG+ IEFP F
Sbjct: 183 GSGSSLIECPIFPGG-KCGTSIEFPTF 208
>pdb|1IYB|A Chain A, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease Nw Length = 208 Back     alignment and structure
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp Length = 217 Back     alignment and structure
>pdb|1J1F|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex With 5'-Gmp Length = 191 Back     alignment and structure
>pdb|1UCG|A Chain A, Crystal Structure Of Ribonuclease Mc1 N71t Mutant Length = 190 Back     alignment and structure
>pdb|1BK7|A Chain A, Ribonuclease Mc1 From The Seeds Of Bitter Gourd Length = 190 Back     alignment and structure
>pdb|1J1G|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71s In Complex With 5'-Gmp Length = 190 Back     alignment and structure
>pdb|1V9H|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant Y101a In Complex With 5'-Ump Length = 197 Back     alignment and structure
>pdb|1JY5|A Chain A, Rnase-Related Protein From Calystegia Sepium Length = 212 Back     alignment and structure
>pdb|1IOO|A Chain A, Crystal Structure Of Nicotiana Alata Gemetophytic Self-incompatibility Associated Sf11-rnase Length = 196 Back     alignment and structure
>pdb|1SGL|A Chain A, The Three-Dimensional Structure And X-Ray Sequence Reveal That Trichomaglin Is A Novel S-Like Ribonuclease Length = 209 Back     alignment and structure
>pdb|3T0O|A Chain A, Crystal Structure Analysis Of Human Rnase T2 Length = 238 Back     alignment and structure
>pdb|1IQQ|A Chain A, Crystal Structure Of Japanese Pear S3-Rnase Length = 200 Back     alignment and structure
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus Niveus At 2.0 A Resolution Length = 222 Back     alignment and structure
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase Length = 247 Back     alignment and structure
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases As Antitumorigenic Agents Length = 237 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
1iyb_A208 Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP 6e-91
1vcz_A217 RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.8 3e-83
1ucd_A190 Ribonuclease MC; alpha plus beta, hydrolase; HET: 2e-67
1sgl_A209 Trichomaglin; S-like ribonuclease, X-RAY sequence, 2e-63
1jy5_A212 CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2 3e-61
1ioo_A196 SF11-RNAse; SELF-incompatibility ribonuclease, hyd 2e-59
3t0o_A238 Ribonuclease T2, ribonuclease 6; rnaset2, alpha/be 1e-57
1iqq_A200 S3-RNAse; japanese PEAR, SELF-incompatibilit famil 3e-56
3d3z_A247 Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {A 1e-44
2pqx_A245 Ribonuclease I; hydrolase; HET: MES; 1.42A {Escher 8e-43
1bol_A222 Protein (ribonuclease RH); ribonucleases, hydrolas 1e-42
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A Length = 208 Back     alignment and structure
 Score =  265 bits (678), Expect = 6e-91
 Identities = 153/208 (73%), Positives = 175/208 (84%), Gaps = 1/208 (0%)

Query: 23  LCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPN 82
           +  A++FDFFYFV QWPGSYCDT +SCCYP TGKPA+DFGIHGLWPN NDGSYPSNCD N
Sbjct: 2   VEFAQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSN 61

Query: 83  APFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNL 142
           +P+DQSQ+SDL S M +NWPTLACPSG G  FWSHEWEKHGTC+E+V +QH YF+ AL+L
Sbjct: 62  SPYDQSQVSDLISRMQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDL 121

Query: 143 KNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCV 202
           KNQINLL+ L+ AGI PDG  YSL SIK+AI+ A G++P IECNVDESGNSQLYQIY+CV
Sbjct: 122 KNQINLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGIECNVDESGNSQLYQIYICV 181

Query: 203 DTSASNFINCPVFPNGKKCGSQIEFPPF 230
           D S SN I CP+FP G KCGS IEFP F
Sbjct: 182 DGSGSNLIECPIFPRG-KCGSSIEFPTF 208
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A* Length = 217 Back     alignment and structure
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A* Length = 190 Back     alignment and structure
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1 Length = 209 Back     alignment and structure
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1 Length = 212 Back     alignment and structure
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1 Length = 196 Back     alignment and structure
>3t0o_A Ribonuclease T2, ribonuclease 6; rnaset2, alpha/beta fold, RNA cleavage, hydrol; HET: NAG; 1.59A {Homo sapiens} Length = 238 Back     alignment and structure
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1 Length = 200 Back     alignment and structure
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger} Length = 247 Back     alignment and structure
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A* Length = 245 Back     alignment and structure
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1 Length = 222 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
1iyb_A208 Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP 100.0
1vcz_A217 RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.8 100.0
1sgl_A209 Trichomaglin; S-like ribonuclease, X-RAY sequence, 100.0
1jy5_A212 CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2 100.0
1ucd_A190 Ribonuclease MC; alpha plus beta, hydrolase; HET: 100.0
1ioo_A196 SF11-RNAse; SELF-incompatibility ribonuclease, hyd 100.0
1iqq_A200 S3-RNAse; japanese PEAR, SELF-incompatibilit famil 100.0
3t0o_A238 Ribonuclease T2, ribonuclease 6; rnaset2, alpha/be 100.0
1bol_A222 Protein (ribonuclease RH); ribonucleases, hydrolas 100.0
2pqx_A245 Ribonuclease I; hydrolase; HET: MES; 1.42A {Escher 100.0
3d3z_A247 Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {A 100.0
4dvk_A165 E(RNS) glycoprotein; T2 ribonuclease, virus envelo 99.89
2ciw_A 299 Chloroperoxidase; oxidoreductase, heme, iron, chlo 83.94
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A Back     alignment and structure
Probab=100.00  E-value=1.2e-66  Score=435.87  Aligned_cols=206  Identities=74%  Similarity=1.383  Sum_probs=187.3

Q ss_pred             ccCCCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeecCCCCCCCCCCCCCCCCCCCCchhhhHHHHhhccCCC
Q 026944           24 CAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPT  103 (230)
Q Consensus        24 ~~~~~fD~~~L~l~Wpp~~C~~~~~~C~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~d~~~i~~l~~~L~~~Wp~  103 (230)
                      .++++||||+|||+|||+||..++.||.|..+.+..+||||||||++.++.+|++|+.+.+|+..+|++++++|+.+||+
T Consensus         3 ~~~~~fD~~~l~l~Wpp~~C~~~~~cc~p~~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~   82 (208)
T 1iyb_A            3 EFAQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSPYDQSQVSDLISRMQQNWPT   82 (208)
T ss_dssp             CCCCSCSEEEEEEECHHHHSSSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCBSCCTTSCCCGGGGGGGHHHHHHHSCC
T ss_pred             ccCCCceEEEEEEeCChHHhcCCCCCCCCCCCCCCCCCEEccccCCCCCCCCCCCCCCCCCCCchhcchhhhHhhccCCC
Confidence            45789999999999999999988778987554567899999999998888999999876779988898999999999999


Q ss_pred             CccCCCCCcccccccccceeecccCcCChHHHHHHHHHHHhhcCHHHHHHHCCCCCCCCcccHHHHHHHHHHHhCCCceE
Q 026944          104 LACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWI  183 (230)
Q Consensus       104 ~~~~~~~~~~fw~hEW~KHGtC~~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~~p~l  183 (230)
                      +.++.+++..||+|||+|||||++.+.+|.+||++|++|++++|++++|+++||+|++++|++++|++||++++|..|.|
T Consensus        83 l~~~~~~~~~fW~hEw~KHGTC~~~~~~q~~YF~~a~~l~~~~~~~~~L~~~gI~P~~~~~t~~~I~~Ai~~~~g~~p~l  162 (208)
T 1iyb_A           83 LACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGI  162 (208)
T ss_dssp             CCSSCCCSHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHHCCHHHHHHHTTCCSSSCEEEHHHHHHHHHHHHSSCCEE
T ss_pred             cccCCCCcchHHHhhccCCeeeCccccCHHHHHHHHHHHHHHcChHHHHHHCCcccCCceEeHHHHHHHHHHHhCCCeEE
Confidence            97666677899999999999999966699999999999999999999999999999778999999999999999999999


Q ss_pred             EeeeCCCCCceEEEEEEEEeCCCCceecCCCCCCCCCCCCCeecCCC
Q 026944          184 ECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF  230 (230)
Q Consensus       184 ~C~~~~~~~~~L~Ev~iC~d~~~~~~i~Cp~~~~~~~C~~~i~~p~f  230 (230)
                      +|.++.+++.+|.||+||||+++.++|+||....++ |++.|.||+|
T Consensus       163 ~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~~~~-C~~~i~~p~f  208 (208)
T 1iyb_A          163 ECNVDESGNSQLYQIYICVDGSGSNLIECPIFPRGK-CGSSIEFPTF  208 (208)
T ss_dssp             EEEECTTCCEEEEEEEEEEETTSSSBCCCSCCCCCC-CCSEEECCCC
T ss_pred             EEeeCCCCCeEEEEEEEEecCCCCeeecCCCCCCCC-CCCCcCcCCC
Confidence            999877777899999999999988999999764455 9999999998
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A* Back     alignment and structure
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1 Back     alignment and structure
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1 Back     alignment and structure
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A* Back     alignment and structure
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1 Back     alignment and structure
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1 Back     alignment and structure
>3t0o_A Ribonuclease T2, ribonuclease 6; rnaset2, alpha/beta fold, RNA cleavage, hydrol; HET: NAG; 1.59A {Homo sapiens} Back     alignment and structure
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1 Back     alignment and structure
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A* Back     alignment and structure
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger} Back     alignment and structure
>4dvk_A E(RNS) glycoprotein; T2 ribonuclease, virus envelope glycoprotein, viral protein; HET: NAG BMA MAN; 2.21A {Bovine viral diarrhea virus} PDB: 4dw5_A* 4dvl_A* 4dvn_A* 4dw3_A* 4dw4_A* 4dwc_A* 4dwa_A* 4dw7_A* Back     alignment and structure
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 230
d1iyba_208 d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxI 4e-83
d1ucda_190 d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Mom 6e-63
d1iooa_196 d.124.1.1 (A:) Gemetophytic self-incompatibility a 1e-61
d1iqqa_200 d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyri 4e-57
d1sgla_206 d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes 1e-56
d1jy5a_207 d.124.1.1 (A:) RNase-related protein {Hedge bindwe 2e-56
d1bola_222 d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [T 6e-42
>d1iyba_ d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxId: 35889]} Length = 208 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribonuclease Rh-like
superfamily: Ribonuclease Rh-like
family: Ribonuclease Rh-like
domain: RNase NW
species: Nicotiana glutinosa [TaxId: 35889]

 Score =  244 bits (623), Expect = 4e-83
 Identities = 153/207 (73%), Positives = 174/207 (84%), Gaps = 1/207 (0%)

Query: 24  CAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNA 83
             A++FDFFYFV QWPGSYCDT +SCCYP TGKPA+DFGIHGLWPN NDGSYPSNCD N+
Sbjct: 3   EFAQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNS 62

Query: 84  PFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLK 143
           P+DQSQ+SDL S M +NWPTLACPSG G  FWSHEWEKHGTC+E+V +QH YF+ AL+LK
Sbjct: 63  PYDQSQVSDLISRMQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLK 122

Query: 144 NQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVD 203
           NQINLL+ L+ AGI PDG  YSL SIK+AI+ A G++P IECNVDESGNSQLYQIY+CVD
Sbjct: 123 NQINLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGIECNVDESGNSQLYQIYICVD 182

Query: 204 TSASNFINCPVFPNGKKCGSQIEFPPF 230
            S SN I CP+FP G KCGS IEFP F
Sbjct: 183 GSGSNLIECPIFPRG-KCGSSIEFPTF 208
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica charantia) [TaxId: 3673]} Length = 190 Back     information, alignment and structure
>d1iooa_ d.124.1.1 (A:) Gemetophytic self-incompatibility associated SF11-RNase {Winged tobacco (Nicotiana alata) [TaxId: 4087]} Length = 196 Back     information, alignment and structure
>d1iqqa_ d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyrifolia) [TaxId: 3767]} Length = 200 Back     information, alignment and structure
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes lepiniana) [TaxId: 282652]} Length = 206 Back     information, alignment and structure
>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Length = 207 Back     information, alignment and structure
>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId: 4844]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
d1iyba_208 RNase NW {Nicotiana glutinosa [TaxId: 35889]} 100.0
d1ucda_190 Ribonuclease MC1 {Bitter gourd (Momordica charanti 100.0
d1sgla_206 Trichomaglin {Gourd (Trichosanthes lepiniana) [Tax 100.0
d1iooa_196 Gemetophytic self-incompatibility associated SF11- 100.0
d1jy5a_207 RNase-related protein {Hedge bindweed (Calystegia 100.0
d1iqqa_200 S3-RNase {Japanese pear (Pyrus pyrifolia) [TaxId: 100.0
d1bola_222 Ribonuclease Rh {Rhizopus niveus [TaxId: 4844]} 100.0
d2ciwa1120 Cloroperoxidase {Fungus (Caldariomyces fumago) [Ta 92.3
>d1iyba_ d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxId: 35889]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribonuclease Rh-like
superfamily: Ribonuclease Rh-like
family: Ribonuclease Rh-like
domain: RNase NW
species: Nicotiana glutinosa [TaxId: 35889]

Probab=100.00  E-value=1.3e-65  Score=427.60  Aligned_cols=205  Identities=75%  Similarity=1.395  Sum_probs=188.6

Q ss_pred             cCCCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeecCCCCCCCCCCCCCCCCCCCCchhhhHHHHhhccCCCC
Q 026944           25 AARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTL  104 (230)
Q Consensus        25 ~~~~fD~~~L~l~Wpp~~C~~~~~~C~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~d~~~i~~l~~~L~~~Wp~~  104 (230)
                      .+++||||+||++|||+||+.++.||.+..+.+..+||||||||++.++.+|++|+.+..||.+.+++++++|+.+||++
T Consensus         4 ~~~~fDy~~l~~~Wpp~~C~~~~~~~~~~~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~~~~~~~~~l~~~l~~~Wp~l   83 (208)
T d1iyba_           4 FAQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSPYDQSQVSDLISRMQQNWPTL   83 (208)
T ss_dssp             CCCSCSEEEEEEECHHHHSSSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCBSCCTTSCCCGGGGGGGHHHHHHHSCCC
T ss_pred             ccCCCCeEEEEEECCHHHhCCCCCCCCCCCCCCCCCeEEeCCCCCCCCCCCccccCCCcCccccccHHHHHHHHHHHHHh
Confidence            46899999999999999999877777665445678999999999999999999999878899999999999999999999


Q ss_pred             ccCCCCCcccccccccceeecccCcCChHHHHHHHHHHHhhcCHHHHHHHCCCCCCCCcccHHHHHHHHHHHhCCCceEE
Q 026944          105 ACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIE  184 (230)
Q Consensus       105 ~~~~~~~~~fw~hEW~KHGtC~~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~~p~l~  184 (230)
                      ..+.+++.+||+|||+|||||+++++++.+||++|++|++++|++++|+++||+|++++|++++|++||++++|.+|.|+
T Consensus        84 ~~~~~~~~~~w~hEW~KHGtC~~~~~~~~~YF~~al~L~~~~n~~~~L~~~~i~p~~~~y~~~~i~~al~~~~g~~~~l~  163 (208)
T d1iyba_          84 ACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGIE  163 (208)
T ss_dssp             CSSCCCSHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHHCCHHHHHHHTTCCSSSCEEEHHHHHHHHHHHHSSCCEEE
T ss_pred             hcccCccHHHHHHhcccceeccCccCCHHHHHHHHHHHHHHcccHHHHHhcccCCCCceeeHHHHHHHHHHhhCCCccEE
Confidence            76666778899999999999999888999999999999999999999999999998788999999999999999999999


Q ss_pred             eeeCCCCCceEEEEEEEEeCCCCceecCCCCCCCCCCCCCeecCCC
Q 026944          185 CNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF  230 (230)
Q Consensus       185 C~~~~~~~~~L~Ev~iC~d~~~~~~i~Cp~~~~~~~C~~~i~~p~f  230 (230)
                      |.++..++.+|+||+||+|+++.++|+||....++ ||+.|.||||
T Consensus       164 C~~~~~~~~~L~Ei~iC~~~~~~~~~~Cp~~~~~~-C~~~i~~P~f  208 (208)
T d1iyba_         164 CNVDESGNSQLYQIYICVDGSGSNLIECPIFPRGK-CGSSIEFPTF  208 (208)
T ss_dssp             EEECTTCCEEEEEEEEEEETTSSSBCCCSCCCCCC-CCSEEECCCC
T ss_pred             EEEcCCCCEEEEEEEEEEeCCcCceeECCCCCCCC-CCCceEcCCC
Confidence            99988888899999999999987899999876665 9999999998
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica charantia) [TaxId: 3673]} Back     information, alignment and structure
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes lepiniana) [TaxId: 282652]} Back     information, alignment and structure
>d1iooa_ d.124.1.1 (A:) Gemetophytic self-incompatibility associated SF11-RNase {Winged tobacco (Nicotiana alata) [TaxId: 4087]} Back     information, alignment and structure
>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Back     information, alignment and structure
>d1iqqa_ d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyrifolia) [TaxId: 3767]} Back     information, alignment and structure
>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId: 4844]} Back     information, alignment and structure
>d2ciwa1 a.39.3.1 (A:0-119) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]} Back     information, alignment and structure