Citrus Sinensis ID: 026946

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINATANAD
Secondary Structure (PSIPRED)
cHHHHHHHcccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEcccccHHHHHHHHHHHHccccccccEEEEEEEEcccEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcHHHccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccHccccHHHHHHHHccccccHHHccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEEEEcccEEEEEEEcccccccHHHHHHHHHHHHHHHccccEcccEEEcccHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MADAAYGAInlethsgahprlgvvddivfhplARASLDEAAWLAKAVAAdigsrfqvPVFLyaaahptgkpldTIRRElgyyrpnsmgnqwagwtmpeilperpnegpiqvspargiamigarpwvalynipimstDVAATRRIARMVSarggglptvqtlglvhgedsTEIACMllepnqvgadRVQNRVEKLAAEegldvekgyftdfspEMIVEKYMNLINATANAD
Flexible Loop (DISEMBL)
MADAAYGAINlethsgahprLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYaaahptgkpldTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVsarggglptvQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLaaeegldvekgyfTDFSPEMIVEKYMNLINATANAD
Low Complexity Region (SEG)
MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINATANAD
Disordered region (IsUnstruct)
******GAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEIL********IQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLIN******
Disordered Region (DISOPRED)
**DAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPTGKPLDTIRRELGYYRPNSM*****GW**PEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINAT****
Disordered Region (DISEMBL)
MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINATANAD
Disordered Region (DISPRO)
MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINATANAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
O88618	541	Formimidoyltransferase-cy	yes	no	0.652	0.277	0.325	2e-12
Q91XD4	541	Formimidoyltransferase-cy	yes	no	0.652	0.277	0.319	6e-12
P53603	541	Formimidoyltransferase-cy	yes	no	0.826	0.351	0.295	8e-11
O95954	541	Formimidoyltransferase-cy	yes	no	0.652	0.277	0.313	2e-10
Q54JL3	537	Formimidoyltransferase-cy	yes	no	0.613	0.262	0.286	3e-10
Q9YH58	541	Formimidoyltransferase-cy	yes	no	0.721	0.306	0.284	2e-09

>sp|O88618|FTCD_RAT Formimidoyltransferase-cyclodeaminase OS=Rattus norvegicus GN=Ftcd PE=1 SV=4

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 77/169 (45%), Gaps = 19/169 (11%)

Query: 2   ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
           A  A   I++  H G HPR+G +D   F P+   S+DE    AKA    +     VPV+L
Sbjct: 66  ARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELNVPVYL 125

Query: 62  Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
           Y  AA  P+ + L  IR   G Y       + A W         P+ GP    P+ G  +
Sbjct: 126 YGEAAQMPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATV 175

Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 162
            GAR ++  +NI ++ST   A  RIA  +  +G      G L  VQ +G
Sbjct: 176 TGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223

Binds and promotes bundling of vimentin filaments originating from the Golgi.
Rattus norvegicus (taxid: 10116)
EC: 4EC: .EC: 3EC: .EC: 1EC: .EC: 4

>sp|Q91XD4|FTCD_MOUSE Formimidoyltransferase-cyclodeaminase OS=Mus musculus GN=Ftcd PE=1 SV=1

 Score = 71.2 bits (173), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 19/169 (11%)

Query: 2   ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
           A  A   I++  H G HPR+G +D   F P+   S++E    AKA    +     VPV+L
Sbjct: 66  ARTASQLIDMSKHKGEHPRMGALDVCPFIPVRGVSMEECVLCAKAFGQRLAEELNVPVYL 125

Query: 62  Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
           Y  AA  P+ + L  IR   G Y       + A W         P+ GP    P+ G  +
Sbjct: 126 YGEAAQTPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATV 175

Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 162
            GAR ++  +NI ++ST   A  RIA  +  +G      G L  VQ +G
Sbjct: 176 TGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223

Binds and promotes bundling of vimentin filaments originating from the Golgi.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

>sp|P53603|FTCD_PIG Formimidoyltransferase-cyclodeaminase OS=Sus scrofa GN=FTCD PE=1 SV=1

 Score = 67.4 bits (163), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 92/210 (43%), Gaps = 20/210 (9%)

Query: 2   ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
           A AAY  I++  H G HPR+G +D   F P+   ++DE    A+A    +     VPV+L
Sbjct: 66  ARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVYL 125

Query: 62  YAAAHPTG--KPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
           Y  A  T   + L  +R   G Y       + A W         P+ GP    P+ G  +
Sbjct: 126 YGEAARTAGRQSLPALR--AGEYEALPEKLKQAEWA--------PDFGPSAFVPSWGATV 175

Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHGEDS-TEI 172
            GAR ++  +NI ++ST   A  RIA  +  +G      G L  VQ +G    E +  ++
Sbjct: 176 AGARKFLLAFNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQV 234

Query: 173 ACMLLEPNQVGADRVQNRVEKLAAEEGLDV 202
           +  LL+    G   V     + A E  L V
Sbjct: 235 STNLLDFEVTGLHTVFEETCREAQELSLPV 264

Binds and promotes bundling of vimentin filaments originating from the Golgi.

Sus scrofa (taxid: 9823)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

>sp|O95954|FTCD_HUMAN Formimidoyltransferase-cyclodeaminase OS=Homo sapiens GN=FTCD PE=1 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 74/169 (43%), Gaps = 19/169 (11%)

Query: 2   ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
           A  A   I++  H G HPR+G +D   F P+   S+DE    A+A    +     VPV+L
Sbjct: 66  ARVASRLIDMSRHQGEHPRMGALDVCPFIPVRGVSVDECVLCAQAFGQRLAEELDVPVYL 125

Query: 62  Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
           Y  AA   + + L  IR   G Y       Q A W         P+ GP    P+ G   
Sbjct: 126 YGEAARMDSRRTLPAIR--AGEYEALPKKLQQADWA--------PDFGPSSFVPSWGATA 175

Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 162
            GAR ++  +NI ++ T   A  RIA  +  +G      G L  VQ +G
Sbjct: 176 TGARKFLIAFNINLLGTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223

Binds and promotes bundling of vimentin filaments originating from the Golgi.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

>sp|Q54JL3|FTCD_DICDI Formimidoyltransferase-cyclodeaminase OS=Dictyostelium discoideum GN=ftcd PE=3 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 9/150 (6%)

Query: 5   AYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAA 64
           A+  I++  H G HPR+G +D   F P+   +++E    +K     I     VP+FLY  
Sbjct: 69  AFKLIDMTKHHGEHPRMGALDVCPFVPVRNVTMEECVNCSKEFGKRISEEIGVPIFLYEE 128

Query: 65  AHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARP 124
           A        + R++L   R    G         +    +P+ GP +  P+ G ++ GAR 
Sbjct: 129 AST-----QSYRKQLKQIR---QGEYEGLEEKLKEEKWKPDFGPAKFIPSYGASVTGARS 180

Query: 125 WVALYNIPIMSTDVAATRRIARMVSARGGG 154
           ++  YN+ I+ T   A  RIA  V   G G
Sbjct: 181 FLIAYNVNILGTKEQA-HRIALNVREAGRG 209

Folate-dependent enzyme, that displays both transferase and deaminase activity. Serves to channel one-carbon units from formiminoglutamate to the folate pool.

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

>sp|Q9YH58|FTCD_CHICK Formimidoyltransferase-cyclodeaminase OS=Gallus gallus GN=FTCD PE=2 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 20/186 (10%)

Query: 2   ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
           A  A+  I++  H G HPR+G +D   F P+   S++E    A      +     VPV+L
Sbjct: 66  ARMAWELIDMSRHKGEHPRMGALDVCPFVPVMNISMEECVICAHVFGQRLSEELGVPVYL 125

Query: 62  Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
           Y  AA   + + L  IR   G Y       +   W         P+ GP    P  G  +
Sbjct: 126 YGEAARQESRRTLPAIRA--GEYEALPKKLEKPEWV--------PDFGPPAFVPQWGATV 175

Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG-LVHGEDSTEI 172
            GAR ++  YNI ++ T   A  RIA  +  +G      G L  VQ +G  +  E+  ++
Sbjct: 176 TGARTFLIAYNINLLCTKELA-HRIALNIREQGRGADQPGSLKKVQGIGWYLEEENIAQV 234

Query: 173 ACMLLE 178
           +  LL+
Sbjct: 235 STNLLD 240

Binds and promotes bundling of vimentin filaments originating from the Golgi.

Gallus gallus (taxid: 9031)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
255553875	300	formiminotransferase-cyclodeaminase, put	0.982	0.753	0.876	1e-114
224127011	300	predicted protein [Populus trichocarpa]	0.978	0.75	0.817	1e-104
297739270	345	unnamed protein product [Vitis vinifera]	0.973	0.649	0.812	1e-102
225447252	317	PREDICTED: formimidoyltransferase-cyclod	0.973	0.706	0.812	1e-102
449444392	324	PREDICTED: formimidoyltransferase-cyclod	0.982	0.697	0.756	1e-99
224126753	300	predicted protein [Populus trichocarpa]	0.978	0.75	0.804	1e-97
363807050	318	uncharacterized protein LOC100784302 [Gl	0.973	0.704	0.791	3e-95
125544634	318	hypothetical protein OsI_12376 [Oryza sa	0.965	0.698	0.591	1e-77
115453915	318	Os03g0582000 [Oryza sativa Japonica Grou	0.965	0.698	0.591	2e-77
41469311	303	expressed protein [Oryza sativa Japonica	0.965	0.732	0.591	3e-77

>gi|255553875|ref|XP_002517978.1| formiminotransferase-cyclodeaminase, putative [Ricinus communis] gi|223542960|gb|EEF44496.1| formiminotransferase-cyclodeaminase, putative [Ricinus communis]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/226 (87%), Positives = 213/226 (94%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           M +AAYGAINLE+H GAHPRLGVVDDIVFHPL+ ASLDEA+WLAKAVAA+IGSRFQVPVF
Sbjct: 73  MVEAAYGAINLESHCGAHPRLGVVDDIVFHPLSWASLDEASWLAKAVAAEIGSRFQVPVF 132

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LYAAAH TGK LDTIRRELGYYRPN MGNQWAGWTMP+IL E+P+EGP QVS ARGI MI
Sbjct: 133 LYAAAHSTGKALDTIRRELGYYRPNFMGNQWAGWTMPDILLEKPDEGPQQVSRARGITMI 192

Query: 121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 180
           GARPWVALYN+PIMSTDV+ATR+IARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN
Sbjct: 193 GARPWVALYNVPIMSTDVSATRQIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 252

Query: 181 QVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINAT 226
           Q+GADRVQ RVE LAA+EGLD EKGYFTDFSPEMIVEKYMNLI+A+
Sbjct: 253 QIGADRVQTRVEMLAAQEGLDAEKGYFTDFSPEMIVEKYMNLISAS 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127011|ref|XP_002329361.1| predicted protein [Populus trichocarpa] gi|222870411|gb|EEF07542.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/225 (81%), Positives = 199/225 (88%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           M +AAYGAINLE HSGAHPRLGVVDDIVFHPLARASLDEAAWLAK VAADIGSRFQVPVF
Sbjct: 73  MVEAAYGAINLELHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKTVAADIGSRFQVPVF 132

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LYAAAHPTG+  DTIRRELGYY PN MGNQWAGWT+PEILP  P+EGP  VS  RGI MI
Sbjct: 133 LYAAAHPTGRAPDTIRRELGYYTPNFMGNQWAGWTIPEILPGAPDEGPTHVSRTRGIVMI 192

Query: 121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 180
           GARPWVALYNIP++ TDV+  R+IARMV AR GGLPTVQ L LVHG+DS EIAC+LLEPN
Sbjct: 193 GARPWVALYNIPVVCTDVSTARQIARMVRARDGGLPTVQALALVHGDDSFEIACILLEPN 252

Query: 181 QVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINA 225
           QVGA+RVQ  VE LAA+EGL+VEKGYFTDF PEMIVEKYMNLI++
Sbjct: 253 QVGAERVQAEVEMLAAQEGLEVEKGYFTDFPPEMIVEKYMNLISS 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739270|emb|CBI28921.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/224 (81%), Positives = 202/224 (90%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           M +AAY AINLE H GAHPRLGVVDDIVFHPLARASL+EAAW AK  AADIG++FQVPVF
Sbjct: 117 MVEAAYEAINLELHHGAHPRLGVVDDIVFHPLARASLEEAAWFAKMAAADIGNKFQVPVF 176

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LY AAHP GKPLD IRRELGYYRPN MGNQW+GW MPE+L E+P+EGP  VS ARGI MI
Sbjct: 177 LYDAAHPMGKPLDIIRRELGYYRPNFMGNQWSGWDMPEVLSEKPDEGPTMVSRARGIVMI 236

Query: 121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 180
           GARPWV++YNIPI+STD++A RRIAR VSARGGGLPTVQTLGL HGEDSTEIACMLLEPN
Sbjct: 237 GARPWVSMYNIPIVSTDISAARRIARTVSARGGGLPTVQTLGLFHGEDSTEIACMLLEPN 296

Query: 181 QVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLIN 224
           ++GADRVQN+VE LAA+EGLDVEKGYFTDFSPEMI+EKY+ LI+
Sbjct: 297 RIGADRVQNQVEMLAAQEGLDVEKGYFTDFSPEMIIEKYLKLIS 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447252|ref|XP_002278962.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Vitis vinifera]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/224 (81%), Positives = 202/224 (90%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           M +AAY AINLE H GAHPRLGVVDDIVFHPLARASL+EAAW AK  AADIG++FQVPVF
Sbjct: 89  MVEAAYEAINLELHHGAHPRLGVVDDIVFHPLARASLEEAAWFAKMAAADIGNKFQVPVF 148

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LY AAHP GKPLD IRRELGYYRPN MGNQW+GW MPE+L E+P+EGP  VS ARGI MI
Sbjct: 149 LYDAAHPMGKPLDIIRRELGYYRPNFMGNQWSGWDMPEVLSEKPDEGPTMVSRARGIVMI 208

Query: 121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 180
           GARPWV++YNIPI+STD++A RRIAR VSARGGGLPTVQTLGL HGEDSTEIACMLLEPN
Sbjct: 209 GARPWVSMYNIPIVSTDISAARRIARTVSARGGGLPTVQTLGLFHGEDSTEIACMLLEPN 268

Query: 181 QVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLIN 224
           ++GADRVQN+VE LAA+EGLDVEKGYFTDFSPEMI+EKY+ LI+
Sbjct: 269 RIGADRVQNQVEMLAAQEGLDVEKGYFTDFSPEMIIEKYLKLIS 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444392|ref|XP_004139959.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Cucumis sativus] gi|449475735|ref|XP_004154537.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Cucumis sativus]

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 171/226 (75%), Positives = 195/226 (86%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           M   A+  INLE+HSG HPRLGVVDDIVFHPLARASL EAAWLAKAVA DI + FQVPVF
Sbjct: 90  MTQVAFSHINLESHSGTHPRLGVVDDIVFHPLARASLHEAAWLAKAVAKDIAAMFQVPVF 149

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LY+AAHP+GK  D +RRELGY+RPN  GNQWAGW+MPE LPE P+EGP  VS  RGI MI
Sbjct: 150 LYSAAHPSGKAPDDLRRELGYFRPNYKGNQWAGWSMPETLPENPDEGPNTVSRERGITMI 209

Query: 121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 180
           GARPW A+YNIPI+STDV+ATRRIARMVS RGGGLPTVQT+GL+H +++TEIAC+LLEPN
Sbjct: 210 GARPWTAMYNIPILSTDVSATRRIARMVSGRGGGLPTVQTIGLLHDDETTEIACVLLEPN 269

Query: 181 QVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINAT 226
           QVGADRVQ  VE +AA+ GL+VE GYFTD+SPEMIVEKY+NLI+ T
Sbjct: 270 QVGADRVQRHVEIVAAQFGLEVENGYFTDYSPEMIVEKYLNLISGT 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126753|ref|XP_002319918.1| predicted protein [Populus trichocarpa] gi|222858294|gb|EEE95841.1| predicted protein [Populus trichocarpa]

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/225 (80%), Positives = 198/225 (88%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           + +AAYGAINLE HSGAHPRLGVVDDI FHPLA ASLDEAAWLAKAVAADIGSRFQVPVF
Sbjct: 73  IVEAAYGAINLELHSGAHPRLGVVDDIAFHPLAEASLDEAAWLAKAVAADIGSRFQVPVF 132

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LYAAAHPTG+  DTIRRELGYYRPN MG+QWAGW +PEILPE P+ GP  VS  RG+ +I
Sbjct: 133 LYAAAHPTGRAPDTIRRELGYYRPNFMGSQWAGWNIPEILPENPDHGPNHVSRTRGVTLI 192

Query: 121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 180
           GAR WV LYNIPIM TDV+  RRIARMVSARGGGLPTVQ+L L HG+DS EIACMLLEPN
Sbjct: 193 GARSWVTLYNIPIMCTDVSTARRIARMVSARGGGLPTVQSLALFHGDDSAEIACMLLEPN 252

Query: 181 QVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINA 225
           ++G DRVQ +VE LAA+EGLDVEKGYFTD SPEMIV+KYMNLI+A
Sbjct: 253 RIGPDRVQAQVEMLAAQEGLDVEKGYFTDLSPEMIVQKYMNLISA 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807050|ref|NP_001242582.1| uncharacterized protein LOC100784302 [Glycine max] gi|255640979|gb|ACU20769.1| unknown [Glycine max]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 178/225 (79%), Positives = 194/225 (86%), Gaps = 1/225 (0%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           MA+A + A+NLE H GAHPRLG VDDIVFHPL  ASLDEAAWLAKAVAADIG+RF VPVF
Sbjct: 91  MAEATFNAVNLEFHEGAHPRLGAVDDIVFHPLGHASLDEAAWLAKAVAADIGNRFSVPVF 150

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LYAAAHPTGK LD IRRELGYYRPNS G+QWAGW MPE LP  P+EGP  VS A+GI MI
Sbjct: 151 LYAAAHPTGKELDAIRRELGYYRPNSRGSQWAGWAMPETLPLSPDEGPNVVSRAKGITMI 210

Query: 121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 180
           GARPWV LYN+PI+ TDV+  RRIAR VSARGGGLPTVQT+ LVH EDSTEIACMLL+  
Sbjct: 211 GARPWVTLYNVPILCTDVSVARRIARKVSARGGGLPTVQTIALVH-EDSTEIACMLLDSK 269

Query: 181 QVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINA 225
           QVGADRVQNRVE LAA+EGLD+E+GYFTD SPEMIVEKYM LIN+
Sbjct: 270 QVGADRVQNRVEMLAAQEGLDIEQGYFTDISPEMIVEKYMKLINS 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125544634|gb|EAY90773.1| hypothetical protein OsI_12376 [Oryza sativa Indica Group]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 172/223 (77%), Gaps = 1/223 (0%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           M + A+  INLETH+G HPR+GV+DD+ FHPL +A++++AA LAK VA+DIG+  QVPVF
Sbjct: 93  MIEKAFSTINLETHTGTHPRIGVIDDMSFHPLNQATMEDAAQLAKTVASDIGNFLQVPVF 152

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LY AAHPTGKP+  +RRELGY++PN MG QW G  +P+ILP +P+EGP  VS  RG  MI
Sbjct: 153 LYGAAHPTGKPVTAVRRELGYFQPNYMGIQWMGQVLPDILPVKPDEGPDHVSRERGAIMI 212

Query: 121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 180
           GA P    YN+P++S D+   RRI R V+ RGGGLPTVQ L L HG+D TEIAC  L+P+
Sbjct: 213 GAAPLPLSYNVPVLSKDIPTIRRITRRVTGRGGGLPTVQALALSHGDDCTEIAC-FLDPD 271

Query: 181 QVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLI 223
            V AD+VQ +VE++AAE+GL+VEKGYFTDFS + ++EKY  ++
Sbjct: 272 HVSADQVQQQVEQIAAEQGLEVEKGYFTDFSKDAMLEKYFKIV 314

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115453915|ref|NP_001050558.1| Os03g0582000 [Oryza sativa Japonica Group] gi|41469312|gb|AAS07168.1| expressed protein [Oryza sativa Japonica Group] gi|108709512|gb|ABF97307.1| formiminotransferase-cyclodeaminase, putative, expressed [Oryza sativa Japonica Group] gi|113549029|dbj|BAF12472.1| Os03g0582000 [Oryza sativa Japonica Group] gi|125586936|gb|EAZ27600.1| hypothetical protein OsJ_11547 [Oryza sativa Japonica Group]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 172/223 (77%), Gaps = 1/223 (0%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           M + A+  INLETH+G HPR+GV+DD+ FHPL +A++++AA LAK VA+DIG+  QVPVF
Sbjct: 93  MIEKAFSTINLETHTGTHPRIGVIDDMSFHPLNQATMEDAAQLAKTVASDIGNFLQVPVF 152

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LY AAHPTGKP+  +RRELGY++PN MG QW G  +P+ILP +P+EGP  VS  RG  MI
Sbjct: 153 LYGAAHPTGKPVTAVRRELGYFQPNYMGIQWMGQVLPDILPVKPDEGPDHVSRERGAIMI 212

Query: 121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 180
           GA P    YN+P++S D+   RRI R V+ RGGGLPTVQ L L HG+D TEIAC  L+P+
Sbjct: 213 GAAPLPLNYNVPVLSKDIPTIRRITRRVTGRGGGLPTVQALALSHGDDCTEIAC-FLDPD 271

Query: 181 QVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLI 223
            V AD+VQ +VE++AAE+GL+VEKGYFTDFS + ++EKY  ++
Sbjct: 272 HVSADQVQQQVEQIAAEQGLEVEKGYFTDFSKDAMLEKYFKIV 314

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41469311|gb|AAS07167.1| expressed protein [Oryza sativa Japonica Group] gi|108709513|gb|ABF97308.1| formiminotransferase-cyclodeaminase, putative, expressed [Oryza sativa Japonica Group]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 172/223 (77%), Gaps = 1/223 (0%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           M + A+  INLETH+G HPR+GV+DD+ FHPL +A++++AA LAK VA+DIG+  QVPVF
Sbjct: 78  MIEKAFSTINLETHTGTHPRIGVIDDMSFHPLNQATMEDAAQLAKTVASDIGNFLQVPVF 137

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LY AAHPTGKP+  +RRELGY++PN MG QW G  +P+ILP +P+EGP  VS  RG  MI
Sbjct: 138 LYGAAHPTGKPVTAVRRELGYFQPNYMGIQWMGQVLPDILPVKPDEGPDHVSRERGAIMI 197

Query: 121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 180
           GA P    YN+P++S D+   RRI R V+ RGGGLPTVQ L L HG+D TEIAC  L+P+
Sbjct: 198 GAAPLPLNYNVPVLSKDIPTIRRITRRVTGRGGGLPTVQALALSHGDDCTEIAC-FLDPD 256

Query: 181 QVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLI 223
            V AD+VQ +VE++AAE+GL+VEKGYFTDFS + ++EKY  ++
Sbjct: 257 HVSADQVQQQVEQIAAEQGLEVEKGYFTDFSKDAMLEKYFKIV 299

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2051415	431	AT2G20830 [Arabidopsis thalian	0.973	0.519	0.526	1e-61
UNIPROTKB|F1SI74	328	F1SI74 "Uncharacterized protei	0.669	0.469	0.325	4.5e-15
UNIPROTKB|E1BL83	328	LOC613365 "Uncharacterized pro	0.660	0.463	0.316	2.3e-14
RGD|70915	541	Ftcd "formiminotransferase cyc	0.826	0.351	0.295	1.9e-12
UNIPROTKB|I3LDH7	541	FTCD "Glutamate formimidoyltra	0.826	0.351	0.3	6.6e-12
UNIPROTKB|P53603	541	FTCD "Formimidoyltransferase-c	0.826	0.351	0.3	6.6e-12
MGI|MGI:1339962	541	Ftcd "formiminotransferase cyc	0.826	0.351	0.290	8.5e-12
TIGR_CMR|CHY_0695	305	CHY_0695 "glutamate formiminot	0.839	0.632	0.291	1.8e-11
ZFIN|ZDB-GENE-060929-820	328	zgc:153901 "zgc:153901" [Danio	0.691	0.484	0.295	2.3e-11
UNIPROTKB|F1MNA6	548	FTCD "Uncharacterized protein"	0.826	0.346	0.295	3.5e-10

TAIR|locus:2051415 AT2G20830 [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 118/224 (52%), Positives = 161/224 (71%)

Query:     1 MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
             M   A   INLE H G+HPRLGVVD I FHPL++ S+++ + +A ++A DIGS  +VP +
Sbjct:   206 MVKTALDTINLELHCGSHPRLGVVDHICFHPLSQTSIEQVSSVANSLAMDIGSILRVPTY 265

Query:    61 LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
             LY AA      LD+IRR+LGY++ N  G++WAG    E++P +P+ GP +VS A+G+  +
Sbjct:   266 LYGAAEKEQCTLDSIRRKLGYFKANREGHEWAGGFDLEMVPLKPDAGPQEVSKAKGVVAV 325

Query:   121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPN 180
             GA  WV+ YN+P+MS D+ A RRIAR  S RGGGL +VQT+ LVHGE   E+AC LL P+
Sbjct:   326 GACGWVSNYNVPVMSNDLKAVRRIARKTSERGGGLASVQTMALVHGEGVIEVACNLLNPS 385

Query:   181 QVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLIN 224
             QVG D VQ  +E+L  EEGL V KGY+TD++P+ IVE+YM+L+N
Sbjct:   386 QVGGDEVQGLIERLGREEGLLVGKGYYTDYTPDQIVERYMDLLN 429

GO:0005542 "folic acid binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1SI74 F1SI74 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
 Identities = 57/175 (32%), Positives = 87/175 (49%)

Query:     5 AYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQ-VPVFLYA 63
             A+ +I++E   G HP LG VD I F+PL    ++E   +A+++A ++  R     VFL+ 
Sbjct:    81 AFRSIDMEVQDGIHPCLGAVDLIPFYPLCGVGVEECGAVARSLAENLLLRVPGCSVFLFG 140

Query:    64 AAH-PTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPAR--GIAMI 120
              A  P  +PL   R++LG++            T  +     P+ G   V+PAR  G+  I
Sbjct:   141 EADLPEKRPLVQRRKQLGWF------------TRRDFSALEPDLG---VAPARKCGLTGI 185

Query:   121 GARPWVALYNIPIMSTDVAATRRIARMVSARG-GGLPTVQTLGLVHGEDSTEIAC 174
             GA P+V   N+ I S D+   + IA  +      GL  VQT+   H +   EIAC
Sbjct:   186 GASPYVMNCNVTIDSQDLDLGKEIASAIRGSNVNGLKGVQTMAFPH-QGKIEIAC 239

GO:0016740 "transferase activity" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

UNIPROTKB|E1BL83 LOC613365 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 56/177 (31%), Positives = 87/177 (49%)

Query:     5 AYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVP---VFL 61
             A+ +I++E   G HP LG VD I  +PL+   ++E   +A+++A ++     VP   VFL
Sbjct:    81 AFQSIDMEVQEGIHPCLGAVDLIPIYPLSGVGVEECGAVARSLAENLV--LSVPGCSVFL 138

Query:    62 YAAAH-PTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPAR--GIA 118
             +  A  P  +PL   R++LG++            T+         +  +  +PAR  G+ 
Sbjct:   139 FGEADLPEKRPLVQRRKQLGWFTRRDFS------TL---------KSDLGAAPARRCGLT 183

Query:   119 MIGARPWVALYNIPIMSTDVAATRRIARMVSARG-GGLPTVQTLGLVHGEDSTEIAC 174
              IGA P+V   N+ I S D+A  + IA  +      GL  VQT+   H E   EIAC
Sbjct:   184 GIGASPYVMNCNVTIDSQDLALGKEIASAIRGSNVNGLKGVQTMAFPH-EGKIEIAC 239

GO:0016740 "transferase activity" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

RGD|70915 Ftcd "formiminotransferase cyclodeaminase" [Rattus norvegicus (taxid:10116)]

 Score = 175 (66.7 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 62/210 (29%), Positives = 92/210 (43%)

Query:     2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
             A  A   I++  H G HPR+G +D   F P+   S+DE    AKA    +     VPV+L
Sbjct:    66 ARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELNVPVYL 125

Query:    62 Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
             Y  AA  P+ + L  IR   G Y       + A W         P+ GP    P+ G  +
Sbjct:   126 YGEAAQMPSRQTLPAIRA--GEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATV 175

Query:   120 IGARPWVALYNIPIMSTDVAATRRIARMVSARGGG------LPTVQTLG-LVHGEDSTEI 172
              GAR ++  +NI ++ST   A  RIA  +  +G G      L  VQ +G  +  ++  ++
Sbjct:   176 TGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQV 234

Query:   173 ACMLLEPNQVGADRVQNRVEKLAAEEGLDV 202
             +  LL+        V     + A E  L V
Sbjct:   235 STNLLDFEVTALHTVYEEARREAQELNLPV 264

GO:0005542 "folic acid binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005814 "centriole" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IMP

GO:0019215 "intermediate filament binding" evidence=TAS

GO:0019556 "histidine catabolic process to glutamate and formamide" evidence=IEA

GO:0019557 "histidine catabolic process to glutamate and formate" evidence=IEA

GO:0030409 "glutamate formimidoyltransferase activity" evidence=TAS

GO:0030412 "formimidoyltetrahydrofolate cyclodeaminase activity" evidence=ISO;TAS

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

UNIPROTKB|I3LDH7 FTCD "Glutamate formimidoyltransferase" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 6.6e-12, P = 6.6e-12
 Identities = 63/210 (30%), Positives = 93/210 (44%)

Query:     2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
             A AAY  I++  H G HPR+G +D   F P+   ++DE    A+A    +     VPV+L
Sbjct:    66 ARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVYL 125

Query:    62 YA-AAHPTGKP-LDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
             Y  AA   G+  L  +R   G Y       + A W         P+ GP    P+ G  +
Sbjct:   126 YGEAARTAGRQSLPALRA--GEYEALPEKLKQAEWA--------PDFGPSAFVPSWGATV 175

Query:   120 IGARPWVALYNIPIMSTDVAATRRIARMVSARGGG------LPTVQTLGLVHGEDS-TEI 172
              GAR ++  +NI ++ST   A  RIA  +  +G G      L  VQ +G    E +  ++
Sbjct:   176 AGARKFLLAFNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQV 234

Query:   173 ACMLLEPNQVGADRVQNRVEKLAAEEGLDV 202
             +  LL+    G   V     + A E  L V
Sbjct:   235 STNLLDFEVTGLHTVFEETCREAQELSLPV 264

GO:0030412 "formimidoyltetrahydrofolate cyclodeaminase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

UNIPROTKB|P53603 FTCD "Formimidoyltransferase-cyclodeaminase" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 6.6e-12, P = 6.6e-12
 Identities = 63/210 (30%), Positives = 93/210 (44%)

Query:     2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
             A AAY  I++  H G HPR+G +D   F P+   ++DE    A+A    +     VPV+L
Sbjct:    66 ARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVYL 125

Query:    62 YA-AAHPTGKP-LDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
             Y  AA   G+  L  +R   G Y       + A W         P+ GP    P+ G  +
Sbjct:   126 YGEAARTAGRQSLPALRA--GEYEALPEKLKQAEWA--------PDFGPSAFVPSWGATV 175

Query:   120 IGARPWVALYNIPIMSTDVAATRRIARMVSARGGG------LPTVQTLGLVHGEDS-TEI 172
              GAR ++  +NI ++ST   A  RIA  +  +G G      L  VQ +G    E +  ++
Sbjct:   176 AGARKFLLAFNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQV 234

Query:   173 ACMLLEPNQVGADRVQNRVEKLAAEEGLDV 202
             +  LL+    G   V     + A E  L V
Sbjct:   235 STNLLDFEVTGLHTVFEETCREAQELSLPV 264

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0019557 "histidine catabolic process to glutamate and formate" evidence=IEA

GO:0019556 "histidine catabolic process to glutamate and formamide" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030412 "formimidoyltetrahydrofolate cyclodeaminase activity" evidence=IEA

GO:0030409 "glutamate formimidoyltransferase activity" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

MGI|MGI:1339962 Ftcd "formiminotransferase cyclodeaminase" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 8.5e-12, P = 8.5e-12
 Identities = 61/210 (29%), Positives = 92/210 (43%)

Query:     2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
             A  A   I++  H G HPR+G +D   F P+   S++E    AKA    +     VPV+L
Sbjct:    66 ARTASQLIDMSKHKGEHPRMGALDVCPFIPVRGVSMEECVLCAKAFGQRLAEELNVPVYL 125

Query:    62 Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
             Y  AA  P+ + L  IR   G Y       + A W         P+ GP    P+ G  +
Sbjct:   126 YGEAAQTPSRQTLPAIRA--GEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATV 175

Query:   120 IGARPWVALYNIPIMSTDVAATRRIARMVSARGGG------LPTVQTLG-LVHGEDSTEI 172
              GAR ++  +NI ++ST   A  RIA  +  +G G      L  VQ +G  +  ++  ++
Sbjct:   176 TGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQV 234

Query:   173 ACMLLEPNQVGADRVQNRVEKLAAEEGLDV 202
             +  LL+        V     + A E  L V
Sbjct:   235 STNLLDFEVTALHTVFEEARREAQELNLPV 264

GO:0003824 "catalytic activity" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006547 "histidine metabolic process" evidence=IEA

GO:0006548 "histidine catabolic process" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0030409 "glutamate formimidoyltransferase activity" evidence=TAS

GO:0030412 "formimidoyltetrahydrofolate cyclodeaminase activity" evidence=TAS

GO:0044237 "cellular metabolic process" evidence=IEA

TIGR_CMR|CHY_0695 CHY_0695 "glutamate formiminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 166 (63.5 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 61/209 (29%), Positives = 97/209 (46%)

Query:     1 MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
             MA  A   I++E   G HPR+G  D I   P+   +L+E   LA+ +  ++  R  VP+F
Sbjct:    65 MAAKAIELIDMEQQRGNHPRIGAQDTIPIFPMRNITLEECIQLAEEIGVELNKRTGVPIF 124

Query:    61 LYA--AAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPER-PNEGPIQVSPARG- 116
                  A  P  K LD IR+  G Y    + +       P+  P+R P+ G ++    +G 
Sbjct:   125 FSGENARIPERKALDFIRK--GQYE--GLRDLLLSEN-PD--PKRLPDIGDVKEFVHKGG 177

Query:   117 -IAMIGARPWVALYNIPIMSTD-VAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIAC 174
              I   G  P VA +N+ I+ TD +   ++IA+ V    GG  +V+ + L   E +  +  
Sbjct:   178 TIVSAGTNPLVA-FNV-ILGTDNLEIAKQIAKAVRGPSGGFTSVRAVALKFTERNQVVVS 235

Query:   175 M-LLEPNQVGADRVQNRVEKLAAEEGLDV 202
             M + +       R  N V+  AA  G+ V
Sbjct:   236 MNMFDHEACPLYRTYNFVKSEAARWGVPV 264

GO:0030409 "glutamate formimidoyltransferase activity" evidence=ISS

GO:0030412 "formimidoyltetrahydrofolate cyclodeaminase activity" evidence=ISS

ZFIN|ZDB-GENE-060929-820 zgc:153901 "zgc:153901" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 52/176 (29%), Positives = 84/176 (47%)

Query:     3 DAAYGAINLETHSGAHPRLGVVDDIVFHPLAR-ASLDEAAWLAKAVAADIGSRFQ-VPVF 60
             + A   I++  H G HP +G VD +  +PL     L +    A+A+A  +  R      F
Sbjct:    79 ECACSLIDMSVHEGIHPCMGAVDLVPLYPLGEDVGLQDCGEEAQALALTLAERVAGTSAF 138

Query:    61 LYA-AAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
             L+  A  P  + L   R+E+G++R            +  +   +P+ G  Q +   GI  
Sbjct:   139 LFGWADSPQHRGLAQRRKEIGWFRK-----------VLNVSNIKPDIGS-QPTRRYGITG 186

Query:   120 IGARPWVALYNIPIMSTDVAATRRIARMV-SARGGGLPTVQTLGLVHGEDSTEIAC 174
             +GA P+V   N+ I + D+A  R +A  +  +  GG+P VQ + L H E + EIAC
Sbjct:   187 VGASPYVMNCNVTIDTQDLALGRSVASAIRESSPGGIPGVQVMALPH-EGAVEIAC 241

GO:0016740 "transferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1MNA6 FTCD "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 62/210 (29%), Positives = 91/210 (43%)

Query:     2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
             A  A+  I++  H G HPR+G +D   F P+   ++DE    A+A    +     VPV+L
Sbjct:    73 ARTAHRLIDMSRHRGEHPRMGALDVCPFIPVRGVTMDECVLCAQAFGQRLAEELGVPVYL 132

Query:    62 YA-AAHPTGKP-LDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
             Y  AA  T +  L  IR   G Y       + A W         P+ GP    P+ G   
Sbjct:   133 YGEAARMTSRQSLPAIRA--GEYEALPEKLKQAEWA--------PDFGPSSFIPSWGATA 182

Query:   120 IGARPWVALYNIPIMSTDVAATRRIARMVSARGGG------LPTVQTLGLVHGEDS-TEI 172
              GAR ++  +NI ++ST   A  RIA  +  +G G      L  VQ +G    E +  ++
Sbjct:   183 TGARKFLLAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLSKVQGIGWYLDEKNLAQV 241

Query:   173 ACMLLEPNQVGADRVQNRVEKLAAEEGLDV 202
             +  LL+    G   V     + A E  L V
Sbjct:   242 SMNLLDFEVTGLHTVYEETCREAQELSLPV 271

GO:0030412 "formimidoyltetrahydrofolate cyclodeaminase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_120000049 hypothetical protein (300 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam07837	178	pfam07837, FTCD_N, Formiminotransferase domain, N-	8e-37
COG3643	302	COG3643, COG3643, Glutamate formiminotransferase [	2e-22
TIGR02024	298	TIGR02024, FtcD, glutamate formiminotransferase	2e-22

>gnl|CDD|191867 pfam07837, FTCD_N, Formiminotransferase domain, N-terminal subdomain

 Score =  126 bits (320), Expect = 8e-37
 Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 14/127 (11%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
               A   I++  H G HPR+G VD I F PL   +++E   LAK +   IG    VPV+
Sbjct: 63  AIKKAAELIDMRKHKGEHPRMGAVDVIPFIPLKNVTMEECVELAKELGKRIGEELGVPVY 122

Query: 61  LY--AAAHPTGKPLDTIRR-ELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGI 117
           LY  AA  P  + L  IR+ E    +      +W            P+ GP +  P  G 
Sbjct: 123 LYEEAATRPERRNLAAIRKGEYEGLKEKIKDPEWK-----------PDFGPAEFHPTAGA 171

Query: 118 AMIGARP 124
             +GAR 
Sbjct: 172 TAVGARM 178

The formiminotransferase (FT) domain of formiminotransferase- cyclodeaminase (FTCD) forms a homodimer, and each protomer comprises two subdomains. The N-terminal subdomain is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains. Length = 178

>gnl|CDD|226169 COG3643, COG3643, Glutamate formiminotransferase [Amino acid transport and metabolism]

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 18/168 (10%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           +   A   I++  H G HPR+G  D I F PL   + +E   ++K +   +G    +PV+
Sbjct: 65  LIKKAAELIDMRNHKGEHPRMGAADVIPFVPLKDTTTEECVEISKELGKRVGEELGIPVY 124

Query: 61  LY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPE---RPNEGPIQVSPAR 115
           LY  AA  P  + L  IR+            Q+ G  + E + E    P+ GP +V P  
Sbjct: 125 LYEDAATRPERQNLADIRK-----------GQYEG--LKEKIKEPKWAPDFGPREVHPTA 171

Query: 116 GIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGL 163
           G+  IGAR  +  +N+ + ++++   ++IA+ +    GGL  V+ + +
Sbjct: 172 GVTAIGARMPLIAFNVNLDTSNMEIGKKIAKAIRFSSGGLRFVKAIAV 219

Length = 302

>gnl|CDD|131079 TIGR02024, FtcD, glutamate formiminotransferase

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 26/172 (15%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
           +A  A   I++  H G HPR+G  D I F P+   +++E   LAK     +G    VPV+
Sbjct: 65  LAKKAAELIDMRNHKGEHPRMGAADVIPFIPVRNVTMEECVELAKEFGKRLGEELGVPVY 124

Query: 61  LY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPER-------PNEGPIQV 111
           LY  AA  P  + L  IR+  G Y               E L E+       P+ GP + 
Sbjct: 125 LYEEAATRPERQTLAAIRK--GQY---------------EALFEKIKDPKWKPDFGPSEF 167

Query: 112 SPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGL 163
           +P  G    GAR ++  +N+ + ++++   ++IA+ +  +GGGL  V+ +GL
Sbjct: 168 NPKAGATATGARKFLIAFNVNLGTSNLEIAKKIAKAIRFQGGGLRFVKAIGL 219

This model represents the tetrahydrofolate (THF) dependent glutamate formiminotransferase involved in the histidine utilization pathway. This enzyme interconverts L-glutamate and N-formimino-L-glutamate. The enzyme is bifunctional as it also catalyzes the cyclodeaminase reaction on N-formimino-THF, converting it to 5,10-methenyl-THF and releasing ammonia - part of the process of regenerating THF. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism [Energy metabolism, Amino acids and amines]. Length = 298

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
TIGR02024	298	FtcD glutamate formiminotransferase. This model co	100.0
COG3643	302	Glutamate formiminotransferase [Amino acid transpo	100.0
PF07837	178	FTCD_N: Formiminotransferase domain, N-terminal su	100.0
PF02971	145	FTCD: Formiminotransferase domain; InterPro: IPR01	100.0

>TIGR02024 FtcD glutamate formiminotransferase

Probab=100.00  E-value=9.4e-89  Score=616.83  Aligned_cols=210  Identities=26%  Similarity=0.470  Sum_probs=202.1

Q ss_pred             CHHHHHHhcCCCCCCcCCCCCcccccccceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeec--ccCCCCCChHHHHhh
Q 026946            1 MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYA--AAHPTGKPLDTIRRE   78 (230)
Q Consensus         1 ~~~~A~elIDm~~H~G~HPR~GavDviPf~Pl~~~t~eec~~lA~~la~~i~~~l~vPVyLYg--aa~p~rr~La~iRr~   78 (230)
                      |+++|+++|||++|+|+|||||||||||||||+++|||||+++|+.+|++||++++|||||||  +++|+|++|++||||
T Consensus        65 ~~~~A~elIDm~~H~G~HPR~GAvDvipf~Pl~~~t~eec~~lA~~vg~~i~~~l~VPVyLY~~aA~~p~r~~La~IRrG  144 (298)
T TIGR02024        65 LAKKAAELIDMRNHKGEHPRMGAADVIPFIPVRNVTMEECVELAKEFGKRLGEELGVPVYLYEEAATRPERQTLAAIRKG  144 (298)
T ss_pred             HHHHHHHhcCcccccCCCCCCCccceeeeeeCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEehhhccCCCCCCHHHHhhh
Confidence            579999999999999999999999999999999999999999999999999999999999996  578999999999995


Q ss_pred             cCccCCCCCCCcccccCCCCC-CCCCCCCCCCCCCCCCCeeeecCCCCeeeeeeeecCCCHHHHHHHHHHhccCCCCCCC
Q 026946           79 LGYYRPNSMGNQWAGWTMPEI-LPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPT  157 (230)
Q Consensus        79 ~G~f~~~~~~~~~~g~~~~~~-~~~~PD~Gp~~~~p~~Gat~vGAr~~liayNV~L~t~dl~~A~~IA~~vR~~~GGL~~  157 (230)
                                 ||+|+.++++ .+|+|||||+++||++|+|+||||+||+||||||+|+|+++||+||++||+|||||++
T Consensus       145 -----------q~eg~~e~~~~~~~~PD~Gp~~~~p~~Gat~vGAr~~liayNV~L~t~d~~~a~~IAk~vR~~gGGL~~  213 (298)
T TIGR02024       145 -----------QYEALFEKIKDPKWKPDFGPSEFNPKAGATATGARKFLIAFNVNLGTSNLEIAKKIAKAIRFQGGGLRF  213 (298)
T ss_pred             -----------hhccchhhccCCCCCCCCCCCCCCCCCCeEEEecCCceEEEEEeecCCCHHHHHHHHHHhhhcCCCccc
Confidence                       8999998875 4999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEeeeecC-CCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCcccceeecCCCHHHHH----HHHHH
Q 026946          158 VQTLGLVHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIV----EKYMN  221 (230)
Q Consensus       158 VqAmg~~~~-~g~~qVS~Nl~d~~~tp~~~V~e~v~~~A~~~Gv~V~~~y~~~f~~~~il----e~~~~  221 (230)
                      ||||||+|+ +|++||||||+||++||+|+|||+|+++|++||++|++||++||+|+++|    |.+++
T Consensus       214 VqAmgl~~~~~~~vqVsmNl~d~~~t~~~~v~e~v~~~A~~~Gv~V~gse~vGl~P~~al~~~~~~yl~  282 (298)
T TIGR02024       214 VKAIGLYLEEKNLVQVSMNLTNYEKTPLYRVFELIKMEAQRYGVPVVGSELVGLVPLKALLDVAAYYLR  282 (298)
T ss_pred             eEEeeEeecCCCeEEEEeeccCCccCCHHHHHHHHHHHHHHhCCCccccEEecCcHHHHHHHHHHHHhc
Confidence            999999986 69999999999999999999999999999999999999999999999988    77775

This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism.

>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-81  Score=557.24  Aligned_cols=205  Identities=25%  Similarity=0.453  Sum_probs=196.1

Q ss_pred             CHHHHHHhcCCCCCCcCCCCCcccccccceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeec--ccCCCCCChHHHHhh
Q 026946            1 MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYA--AAHPTGKPLDTIRRE   78 (230)
Q Consensus         1 ~~~~A~elIDm~~H~G~HPR~GavDviPf~Pl~~~t~eec~~lA~~la~~i~~~l~vPVyLYg--aa~p~rr~La~iRr~   78 (230)
                      ++++|.++|||++|+|+||||||+|||||+||.++|||||+++|+.+|+++|++||||||||+  +++|+|++|++|||+
T Consensus        65 ~ik~AaelIDM~~H~GeHpRmGA~DViPfvPl~d~tteecveiske~gkrvgeelgiPVylYe~aatrp~R~~La~IRkg  144 (302)
T COG3643          65 LIKKAAELIDMRNHKGEHPRMGAADVIPFVPLKDTTTEECVEISKELGKRVGEELGIPVYLYEDAATRPERQNLADIRKG  144 (302)
T ss_pred             HHHHHHHhhchhccCCCCCCCCccceeceeecccccHHHHHHHHHHHHHHhhHhhCCcEEEehhhccCcccccHHHHhhh
Confidence            478999999999999999999999999999999999999999999999999999999999998  468999999999996


Q ss_pred             cCccCCCCCCCcccccCCCCCC-CCCCCCCCCCCCCCCCeeeecCCCCeeeeeeeecCCCHHHHHHHHHHhccCCCCCCC
Q 026946           79 LGYYRPNSMGNQWAGWTMPEIL-PERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPT  157 (230)
Q Consensus        79 ~G~f~~~~~~~~~~g~~~~~~~-~~~PD~Gp~~~~p~~Gat~vGAr~~liayNV~L~t~dl~~A~~IA~~vR~~~GGL~~  157 (230)
                                 ||||+.+++++ .|+|||||.++||++|+|+||||.|||||||||+|+|++|+|+||++||.++|||++
T Consensus       145 -----------qyE~l~ekikep~WaPDfGp~~~~PtaG~t~iGaR~pLiAfNvNL~t~n~eI~kkIakaiR~s~GG~~~  213 (302)
T COG3643         145 -----------QYEGLKEKIKEPKWAPDFGPREVHPTAGVTAIGARMPLIAFNVNLDTSNMEIGKKIAKAIRFSSGGLRF  213 (302)
T ss_pred             -----------hhhhHHHHhcCcccCCCCCccccCCCCcceEeecccceEEEEeccCcccchHHHHHHHHHhhcCCCeee
Confidence                       88999998876 999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEeeee-cCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCcccceeecCCCHHHHH
Q 026946          158 VQTLGLV-HGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIV  216 (230)
Q Consensus       158 VqAmg~~-~~~g~~qVS~Nl~d~~~tp~~~V~e~v~~~A~~~Gv~V~~~y~~~f~~~~il  216 (230)
                      |||+|+. .++|++||||||+||++||+|++||+|+.+|.||||.|++|..+|+.|.+.|
T Consensus       214 vkAi~~~L~dk~~vQVSMN~~ny~KtpiyR~fEtiK~EA~Rygv~vv~sEivGl~P~~aL  273 (302)
T COG3643         214 VKAIAVELKDKGIVQVSMNMTNYEKTPIYRVFETIKMEANRYGVNVVGSEIVGLVPEQAL  273 (302)
T ss_pred             eeeeeeeeccCCeEEEEEeecccccCcHHHHHHHHHHHHHhcCCCcccceEeccchHHHH
Confidence            9999997 6789999999999999999999999999999999999999987777777543

>PF07837 FTCD_N: Formiminotransferase domain, N-terminal subdomain; InterPro: IPR012886 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains

Probab=100.00  E-value=2.4e-49  Score=337.64  Aligned_cols=113  Identities=39%  Similarity=0.656  Sum_probs=85.2

Q ss_pred             CHHHHHHhcCCCCCCcCCCCCcccccccceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeec--ccCCCCCChHHHHhh
Q 026946            1 MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYA--AAHPTGKPLDTIRRE   78 (230)
Q Consensus         1 ~~~~A~elIDm~~H~G~HPR~GavDviPf~Pl~~~t~eec~~lA~~la~~i~~~l~vPVyLYg--aa~p~rr~La~iRr~   78 (230)
                      |+++|+++|||++|+|+|||||||||||||||+++|||||+++|+++|++||++|+|||||||  +++|+||+|++|||+
T Consensus        63 ~~~~A~~~IDm~~H~G~HPRlGavDvipf~Pl~~~t~eec~~~A~~~g~~i~~~l~vPVyLYg~aA~~p~r~~L~~iRrg  142 (178)
T PF07837_consen   63 AIRKALELIDMRKHSGEHPRLGAVDVIPFIPLSGVTMEECAELARELGERIGEELGVPVYLYGEAAAHPERRNLADIRRG  142 (178)
T ss_dssp             HHHHHHCC--GGG---SS--SCSEEEEEEEEEES--HHHHHHHHHHHHHHHHHHHT--EEEEETT-SSCCCSSHHHHCTT
T ss_pred             HHHHHHHhcchhcccCCCCCCCccceeeeeeCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEehhhhCCcccCcHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999999  689999999999994


Q ss_pred             cCccCCCCCCCcccccCCCCC-CCCCCCCCCCCCCCCCCeeeecCCC
Q 026946           79 LGYYRPNSMGNQWAGWTMPEI-LPERPNEGPIQVSPARGIAMIGARP  124 (230)
Q Consensus        79 ~G~f~~~~~~~~~~g~~~~~~-~~~~PD~Gp~~~~p~~Gat~vGAr~  124 (230)
                                 ||+++.++.. .+|+|||||+++||++|+|+||||.
T Consensus       143 -----------e~e~l~~~~~~~~w~PD~Gp~~~~~~~Gat~vGAr~  178 (178)
T PF07837_consen  143 -----------EYEGLKEKIKDPEWAPDFGPAEFHPTAGATAVGARK  178 (178)
T ss_dssp             -----------CCCCHHHHTTSCCC--SBS-S---TTTB-EEEEE-S
T ss_pred             -----------HHHhhhhhccCCCCCCCCCCCCCCCCCCeEEEeecC
Confidence                       5556665443 3899999999999999999999985

The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. This entry represents the N-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 2PFD_C 1QD1_B.

>PF02971 FTCD: Formiminotransferase domain; InterPro: IPR013802 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains

Probab=100.00  E-value=6.2e-34  Score=235.62  Aligned_cols=91  Identities=22%  Similarity=0.395  Sum_probs=76.8

Q ss_pred             CeeeeeeeecCCCHHHHHHHHHHhccCC------CCCCCceEeeee-cCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 026946          125 WVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLV-HGEDSTEIACMLLEPNQVGADRVQNRVEKLAAE  197 (230)
Q Consensus       125 ~liayNV~L~t~dl~~A~~IA~~vR~~~------GGL~~VqAmg~~-~~~g~~qVS~Nl~d~~~tp~~~V~e~v~~~A~~  197 (230)
                      |||||||||+++| ++||+||++||++|      |||++||||||+ .++|++||||||+|+++||+|+|||+|+++|++
T Consensus         1 FLIAyNVnLl~T~-~iA~~IA~~iR~sgrg~~~PGgl~~VkAiG~~l~~~~~aQVSmNltd~~~Tpl~~vfe~v~~eA~~   79 (145)
T PF02971_consen    1 FLIAYNVNLLTTK-EIAKKIAKAIRESGRGKDQPGGLKYVKAIGWYLEERGIAQVSMNLTDYEKTPLHRVFEEVKREAAR   79 (145)
T ss_dssp             --EEEEEEESS-H-HHHHHHHHHHCTTTTCTTC--SCTTEEEEEEEETTTTEEEEEEEES-TTTS-HHHHHHHHHHHHHC
T ss_pred             CeEEEEeccCCcH-HHHHHHHHHHHhcCCCCCCCCCcceeeEeEEeeccCCeeEEEEeeecCCCCcHHHHHHHHHHHHHH
Confidence            8999999999988 99999999999999      999999999998 457999999999999999999999999999999


Q ss_pred             cCCcccceeecCCCHHHHH
Q 026946          198 EGLDVEKGYFTDFSPEMIV  216 (230)
Q Consensus       198 ~Gv~V~~~y~~~f~~~~il  216 (230)
                      |||+|+||++.|+.|.+.|
T Consensus        80 ~Gv~v~gsElVGlvP~~Al   98 (145)
T PF02971_consen   80 YGVPVVGSELVGLVPLDAL   98 (145)
T ss_dssp             TT--EEEEEEES-B-HHHH
T ss_pred             hCCCccceEEEccccHHHH
Confidence            9999999988888887654

The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. In humans, deficiency of this enzyme results in a disease phenotype []. This entry represents the C-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 1QD1_B 2PFD_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
1tt9_A	541	Structure Of The Bifunctional And Golgi Associated		2e-12
2pfd_A	541	Anisotropically Refined Structure Of Ftcd Length =		2e-12
1qd1_A	325	The Crystal Structure Of The Formiminotransferase D		5e-12

>pdb|1TT9|A Chain A, Structure Of The Bifunctional And Golgi Associated Formiminotransferase Cyclodeaminase Octamer Length = 541

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 2   ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
           A  A   I+   H G HPR G +D   F P+   S DE    AKA    +     VPV+L
Sbjct: 66  ARTASQLIDXRKHKGEHPRXGALDVCPFIPVRGVSXDECVLCAKAFGQRLAEELNVPVYL 125
Query: 62  Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
           Y  AA  P+ + L  IR   G Y       + A W         P+ GP    P+ G  +
Sbjct: 126 YGEAAQXPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATV 175
Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 162
            GAR ++  +NI ++ST   A  RIA  +  +G      G L  VQ +G
Sbjct: 176 TGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223

>pdb|2PFD|A Chain A, Anisotropically Refined Structure Of Ftcd Length = 541

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 2   ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
           A  A   I+   H G HPR G +D   F P+   S DE    AKA    +     VPV+L
Sbjct: 66  ARTASQLIDXRKHKGEHPRXGALDVCPFIPVRGVSXDECVLCAKAFGQRLAEELNVPVYL 125
Query: 62  Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
           Y  AA  P+ + L  IR   G Y       + A W         P+ GP    P+ G  +
Sbjct: 126 YGEAAQXPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATV 175
Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 162
            GAR ++  +NI ++ST   A  RIA  +  +G      G L  VQ +G
Sbjct: 176 TGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223

>pdb|1QD1|A Chain A, The Crystal Structure Of The Formiminotransferase Domain Of Formiminotransferase-Cyclodeaminase. Length = 325

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 16/208 (7%)
Query: 2   ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
           A AAY  I++  H G HPR+G +D   F P+   ++DE    A+A    +     VPV+L
Sbjct: 65  ARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVYL 124
Query: 62  YAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIG 121
           Y  A  T           G Y       + A W         P+ GP    P+ G  + G
Sbjct: 125 YGEAARTAGRQSLPALRAGEYEALPEKLKQAEWA--------PDFGPSAFVPSWGATVAG 176
Query: 122 ARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHGEDS-TEIAC 174
           AR ++  +NI ++ST   A  RIA  +  +G      G L  VQ +G    E +  +++ 
Sbjct: 177 ARKFLLAFNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVST 235
Query: 175 MLLEPNQVGADRVQNRVEKLAAEEGLDV 202
            LL+    G   V     + A E  L V
Sbjct: 236 NLLDFEVTGLHTVFEETCREAQELSLPV 263

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
1qd1_A	325	Formiminotransferase-cyclodeaminase; functional di	2e-50
1tt9_A	541	Formimidoyltransferase-cyclodeaminase (formiminotr	4e-49
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1 Length = 325

 Score =  166 bits (421), Expect = 2e-50
 Identities = 59/224 (26%), Positives = 87/224 (38%), Gaps = 14/224 (6%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
            A AAY  I++  H G HPR+G +D   F P+   ++DE    A+A    +     VPV+
Sbjct: 64  AARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVY 123

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LY  A  T           G Y       + A W         P+ GP    P+ G  + 
Sbjct: 124 LYGEAARTAGRQSLPALRAGEYEALPEKLKQAEWA--------PDFGPSAFVPSWGATVA 175

Query: 121 GARPWVALYNIPIMSTDVAATR-----RIARMVSARGGGLPTVQTLGLVHGE-DSTEIAC 174
           GAR ++  +NI ++ST   A R     R       + G L  VQ +G    E +  +++ 
Sbjct: 176 GARKFLLAFNINLLSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVST 235

Query: 175 MLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEK 218
            LL+    G   V     + A E  L V         P   +  
Sbjct: 236 NLLDFEVTGLHTVFEETCREAQELSLPVVGSQLVGLVPLKALLD 279

>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A Length = 541

 Score =  167 bits (424), Expect = 4e-49
 Identities = 57/219 (26%), Positives = 82/219 (37%), Gaps = 14/219 (6%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
            A  A   I++  H G HPR+G +D   F P+   S+DE    AKA    +     VPV+
Sbjct: 65  AARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELNVPVY 124

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LY  A              G Y       + A W         P+ GP    P+ G  + 
Sbjct: 125 LYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEW--------VPDFGPSSFVPSWGATVT 176

Query: 121 GARPWVALYNIPIMSTDVAATR-----RIARMVSARGGGLPTVQTLGLVHGE-DSTEIAC 174
           GAR ++  +NI ++ST   A R     R       + G L  VQ +G    E +  +++ 
Sbjct: 177 GARKFLIAFNINLLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVST 236

Query: 175 MLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPE 213
            LL+        V     + A E  L V         P 
Sbjct: 237 NLLDFEVTALHTVYEEARREAQELNLPVVGSQLVGLVPL 275

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 36/126 (28%)

Query: 18  HPR-LGVVDDIVFHPLARASLDEAAWLAKAVAA-DIGSR-------FQVPVFLYAAAHPT 68
           +   L V+ ++                AKA  A ++  +        QV  FL AA   T
Sbjct: 243 YENCLLVLLNV--------------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAA---T 285

Query: 69  GKPLDTIRRELGYYRPNSMG--NQWAGWTMPEILPERPNEGPIQVSPARGIAMIGA--RP 124
              +      +            ++     P+ LP       +  +P R +++I    R 
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREV----LTTNP-RRLSIIAESIRD 339

Query: 125 WVALYN 130
            +A ++
Sbjct: 340 GLATWD 345

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
1qd1_A	325	Formiminotransferase-cyclodeaminase; functional di	100.0
1tt9_A	541	Formimidoyltransferase-cyclodeaminase (formiminotr	100.0

>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1

Probab=100.00  E-value=2.1e-85  Score=599.08  Aligned_cols=204  Identities=27%  Similarity=0.436  Sum_probs=193.0

Q ss_pred             CHHHHHHhcCCCCCCcCCCCCcccccccceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeeccc--CCCCCChHHHHhh
Q 026946            1 MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAA--HPTGKPLDTIRRE   78 (230)
Q Consensus         1 ~~~~A~elIDm~~H~G~HPR~GavDviPf~Pl~~~t~eec~~lA~~la~~i~~~l~vPVyLYgaa--~p~rr~La~iRr~   78 (230)
                      |+++|+++|||++|+|+|||||||||||||||+++|||||+++|+++|++||++++|||||||+|  +|+|++|++||| 
T Consensus        64 ~~~~A~elIDm~~H~G~HPRmGavDviPf~Pl~~~tmeec~~lA~~~g~~i~~~l~VPVyLYg~Aa~~p~rr~L~~iRr-  142 (325)
T 1qd1_A           64 AARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVYLYGEAARTAGRQSLPALRA-  142 (325)
T ss_dssp             HHHHHHHHCCGGGCCCSSCCSBSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCEEEEETTCSSGGGSCHHHHHT-
T ss_pred             HHHHHHHhccccccCCCCCCCCccceeeeeeCCCCCHHHHHHHHHHHHHHHhhhcCCcEEeehhhcCCCccCcHHHhcc-
Confidence            57899999999999999999999999999999999999999999999999999999999999975  899999999999 


Q ss_pred             cCccCCCCCCCcccccCCCCC-CCCCCCCCCCCCCCCCCeeeecCCCCeeeeeeeecCCCHHHHHHHHHHhccCC-----
Q 026946           79 LGYYRPNSMGNQWAGWTMPEI-LPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG-----  152 (230)
Q Consensus        79 ~G~f~~~~~~~~~~g~~~~~~-~~~~PD~Gp~~~~p~~Gat~vGAr~~liayNV~L~t~dl~~A~~IA~~vR~~~-----  152 (230)
                       |         ||||+.++.. .+|+|||||+++||++|+|+||||+||||||||| |+|+++||+||++||++|     
T Consensus       143 -G---------~yegl~e~~~~~~~~PD~Gp~~~~p~~Gat~vGAr~~liayNVnL-t~~~~~A~~IA~~vR~~gr~~~~  211 (325)
T 1qd1_A          143 -G---------EYEALPEKLKQAEWAPDFGPSAFVPSWGATVAGARKFLLAFNINL-LSTREQAHRIALDLREQGRGKDQ  211 (325)
T ss_dssp             -T---------HHHHHHHHTTSGGGCCSBSCCCCCTTTBCEEEEECSCCEEEEEEE-SSCHHHHHHHHHHHSTTC-----
T ss_pred             -c---------ccccchhhccCCCCCCCCCCCCCCCCcceEEEecCCceeeEeeec-cCcHHHHHHHHHHhhhcCCCCCC
Confidence             4         4556655444 4899999999999999999999999999999999 777999999999999999     


Q ss_pred             -CCCCCceEeeeecC-CCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCcccceeecCCCHHHHH
Q 026946          153 -GGLPTVQTLGLVHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIV  216 (230)
Q Consensus       153 -GGL~~VqAmg~~~~-~g~~qVS~Nl~d~~~tp~~~V~e~v~~~A~~~Gv~V~~~y~~~f~~~~il  216 (230)
                       |||++||||||+|+ +|++||||||+||++||+|+|||+|+++|++|||+|++||++||+|.++|
T Consensus       212 pGGL~~VqAmg~~~~e~~~~qVS~Nl~d~~~t~~~~V~e~V~~~A~~~Gv~V~gse~vGl~P~~al  277 (325)
T 1qd1_A          212 PGRLKKVQAIGWYLDEKNLAQVSTNLLDFEVTGLHTVFEETCREAQELSLPVVGSQLVGLVPLKAL  277 (325)
T ss_dssp             -CCSTTEEEEEEEETTTTEEEEEEEESCTTTSCHHHHHHHHHHHHHHTTCCEEEEEEESCBCHHHH
T ss_pred             CCCccceEEeeEEecCCCeEEEEecccCCccCCHHHHHHHHHHHHHHcCCceeceEEeCcchHHHH
Confidence             99999999999985 79999999999999999999999999999999999999999999999764

>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A

Probab=100.00  E-value=9.2e-81  Score=600.64  Aligned_cols=205  Identities=27%  Similarity=0.423  Sum_probs=193.3

Q ss_pred             CHHHHHHhcCCCCCCcCCCCCcccccccceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeeccc--CCCCCChHHHHhh
Q 026946            1 MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAA--HPTGKPLDTIRRE   78 (230)
Q Consensus         1 ~~~~A~elIDm~~H~G~HPR~GavDviPf~Pl~~~t~eec~~lA~~la~~i~~~l~vPVyLYgaa--~p~rr~La~iRr~   78 (230)
                      ++++|+++|||++|+|+|||||||||||||||+++|||||+++|+++|++||++++|||||||++  +|+||+|++||| 
T Consensus        65 ~~~~A~~~IDm~~H~G~HPR~GavDvipf~Pl~~~t~eec~~~A~~~~~~i~~~l~vPvylYg~Aa~~p~r~~L~~iRr-  143 (541)
T 1tt9_A           65 AARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELNVPVYLYGEAAQMPSRQTLPAIRA-  143 (541)
T ss_pred             HHHHHHHhcCccccCCCCCCCCCcCccccccCCCCCHHHHHHHHHHHHHHHhhhcCCcEEeeHhhcCCCCcCcHHHhhc-
Confidence            57899999999999999999999999999999999999999999999999999999999999965  999999999999 


Q ss_pred             cCccCCCCCCCcccccCCCCC-CCCCCCCCCCCCCCCCCeeeecCCCCeeeeeeeecCCCHHHHHHHHHHhccCC-----
Q 026946           79 LGYYRPNSMGNQWAGWTMPEI-LPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG-----  152 (230)
Q Consensus        79 ~G~f~~~~~~~~~~g~~~~~~-~~~~PD~Gp~~~~p~~Gat~vGAr~~liayNV~L~t~dl~~A~~IA~~vR~~~-----  152 (230)
                       ||         |||+.++.. .+|+|||||+++||++|+|+||||+||||||||| |+|+++||+||++||+||     
T Consensus       144 -G~---------ye~~~~~~~~~~~~PD~Gp~~~~~~~G~t~vGAr~~liayNV~L-t~~~~~a~~IA~~vr~~gr~~~~  212 (541)
T 1tt9_A          144 -GE---------YEALPEKLKQAEWVPDFGPSSFVPSWGATVTGARKFLIAFNINL-LSTKEQAHRIALNLREQGRGKDQ  212 (541)
T ss_pred             -cc---------cccchhhccCCCCCCCCCCCCCCCCCceEEEecCcceeeeeeec-cccHHHHHHHHHHhhhcCCCCCC
Confidence             45         455554443 4899999999999999999999999999999999 899999999999999998     


Q ss_pred             -CCCCCceEeeeecC-CCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCcccceeecCCCHHHHHH
Q 026946          153 -GGLPTVQTLGLVHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVE  217 (230)
Q Consensus       153 -GGL~~VqAmg~~~~-~g~~qVS~Nl~d~~~tp~~~V~e~v~~~A~~~Gv~V~~~y~~~f~~~~ile  217 (230)
                       |||++||||||+|+ +|++||||||+||++||+|+||++|+++|++|||+|+||+++|++|.+.|-
T Consensus       213 ~Ggl~~Vqamg~~~~~~~~~qVs~Nl~d~~~t~~~~v~e~v~~~A~~~gv~v~gse~vGl~P~~al~  279 (541)
T 1tt9_A          213 PGRLKKVQGIGWYLEEKNLAQVSTNLLDFEVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALL  279 (541)
T ss_pred             CCCccceeEeeEeecCCCeEEEEecccCCccCCHHHHHHHHHHHHHHcCCccccceEeccchHHHHH
Confidence             99999999999975 799999999999999999999999999999999999999999999987553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d1qd1a1	179	d.58.34.1 (A:2-180) Formiminotransferase domain of	7e-33
d1qd1a2	146	d.58.34.1 (A:181-326) Formiminotransferase domain	1e-12

>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  115 bits (289), Expect = 7e-33
 Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 1   MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF 60
            A AAY  I++  H G HPR+G +D   F P+   ++DE    A+A    +     VPV+
Sbjct: 64  AARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVY 123

Query: 61  LYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMI 120
           LY  A  T           G Y       + A W         P+ GP    P+ G  + 
Sbjct: 124 LYGEAARTAGRQSLPALRAGEYEALPEKLKQAEW--------APDFGPSAFVPSWGATVA 175

Query: 121 GAR 123
           GAR
Sbjct: 176 GAR 178

>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 61.3 bits (149), Expect = 1e-12
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 129 YNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHGE-DSTEIACMLLEPNQ 181
           +NI ++ST   A  RIA  +  +G      G L  VQ +G    E +  +++  LL+   
Sbjct: 5   FNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDFEV 63

Query: 182 VGADRVQNRVEKLAAEEGLDV 202
            G   V     + A E  L V
Sbjct: 64  TGLHTVFEETCREAQELSLPV 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d1qd1a1	179	Formiminotransferase domain of formiminotransferas	100.0
d1qd1a2	146	Formiminotransferase domain of formiminotransferas	100.0

>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.8e-48  Score=329.43  Aligned_cols=113  Identities=29%  Similarity=0.510  Sum_probs=104.8

Q ss_pred             CHHHHHHhcCCCCCCcCCCCCcccccccceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeecc--cCCCCCChHHHHhh
Q 026946            1 MADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAA--AHPTGKPLDTIRRE   78 (230)
Q Consensus         1 ~~~~A~elIDm~~H~G~HPR~GavDviPf~Pl~~~t~eec~~lA~~la~~i~~~l~vPVyLYga--a~p~rr~La~iRr~   78 (230)
                      ++++|+++|||++|+|+|||||||||||||||+++|||||+++|+++|++||++|+|||||||+  ..|+|++|++|||+
T Consensus        64 ~~~~A~e~IDm~~H~G~HPR~GavDv~PfiPl~~~t~eec~~lA~~~a~~i~~~l~vPVfLYg~Aa~~~~r~~l~~iR~G  143 (179)
T d1qd1a1          64 AARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVYLYGEAARTAGRQSLPALRAG  143 (179)
T ss_dssp             HHHHHHHHCCGGGCCCSSCCSBSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCEEEEETTCSSGGGSCHHHHHTT
T ss_pred             HHHHHHHhcChhhccccCCcCcccceeeeecCCCCCHHHHHHHHHHHHHHHHhhcCCceEEehhhcCCcccccHHHHhcc
Confidence            4789999999999999999999999999999999999999999999999999999999999995  36789999999995


Q ss_pred             cCccCCCCCCCcccccCCCCCC-CCCCCCCCCCCCCCCCeeeecCCC
Q 026946           79 LGYYRPNSMGNQWAGWTMPEIL-PERPNEGPIQVSPARGIAMIGARP  124 (230)
Q Consensus        79 ~G~f~~~~~~~~~~g~~~~~~~-~~~PD~Gp~~~~p~~Gat~vGAr~  124 (230)
                                 +|+|+.+++.. +|+|||||+.+||++|+|+||||.
T Consensus       144 -----------~yegl~~~~~~~~~~PD~GP~~~~~~~Gat~vGAR~  179 (179)
T d1qd1a1         144 -----------EYEALPEKLKQAEWAPDFGPSAFVPSWGATVAGARK  179 (179)
T ss_dssp             -----------HHHHHHHHTTSGGGCCSBSCCCCCTTTBCEEEEECS
T ss_pred             -----------ceecccccccCCCCCCCCCCCCcCccCCcEEEeecC
Confidence                       66777766544 999999999999999999999995

>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.7e-34  Score=234.41  Aligned_cols=90  Identities=24%  Similarity=0.337  Sum_probs=83.7

Q ss_pred             CeeeeeeeecCCCHHHHHHHHHHhccCC------CCCCCceEeeeecC-CCeEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 026946          125 WVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAE  197 (230)
Q Consensus       125 ~liayNV~L~t~dl~~A~~IA~~vR~~~------GGL~~VqAmg~~~~-~g~~qVS~Nl~d~~~tp~~~V~e~v~~~A~~  197 (230)
                      |||||||||+|+| ++|++||+.||++|      |||++||||||+++ +|++||||||+|+++||+|+|||+|+++|++
T Consensus         1 fLiAYNVnL~t~~-~~A~~IA~~iRe~Gr~~r~~Ggl~~Vka~G~~l~e~~~aQVSmNl~d~~~t~~h~vfe~v~~~A~~   79 (146)
T d1qd1a2           1 FLLAFNINLLSTR-EQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDFEVTGLHTVFEETCREAQE   79 (146)
T ss_dssp             CCEEEEEEESSCH-HHHHHHHHHHSTTC------CCSTTEEEEEEEETTTTEEEEEEEESCTTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEeccCCCH-HHHHHHHHHHHHcCCccCCCCCccceeEeeEEECCCCEEEEEEeecccccCCHHHHHHHHHHHHHH
Confidence            8999999999999 99999999999987      99999999999954 5999999999999999999999999999999


Q ss_pred             cCCcccceeecCCCHHHH
Q 026946          198 EGLDVEKGYFTDFSPEMI  215 (230)
Q Consensus       198 ~Gv~V~~~y~~~f~~~~i  215 (230)
                      +||+|+||+++|+.|.+.
T Consensus        80 ~Gv~V~GSElVGLvP~~A   97 (146)
T d1qd1a2          80 LSLPVVGSQLVGLVPLKA   97 (146)
T ss_dssp             TTCCEEEEEEESCBCHHH
T ss_pred             cCCCccccEEEcceeHHH
Confidence            999999997777666553