Citrus Sinensis ID: 026947

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
cHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHccccccHHHHcccccccccccc
cHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEEEEEEHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccHEEEEcccccEEEEEEcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccc
MAEILGTYFMIFAGCASVVVNlnnekivslpgisIVWGLVVMVLVYSLGhisgahfnpsvtiahatckrfpwkqvppyilcQVLGSTLAAGTLRLLFQEKQdqfagtlpagsNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMfagpitgasmnparslgpaivssqykgLWIYivapplgatagAWVYNMVRYTDKPLREITKSASFLKGAGRS
MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKplreitksasflkgagrs
MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
***ILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLR***************
MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVR**********************
MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKG****
oooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
iiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
iiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
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MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query230 2.2.26 [Sep-21-2011]
Q8LFP7294 Aquaporin NIP1-2 OS=Arabi yes no 0.978 0.765 0.771 1e-100
Q8VZW1296 Aquaporin NIP1-1 OS=Arabi no no 0.978 0.760 0.719 6e-96
P08995271 Nodulin-26 OS=Glycine max no no 1.0 0.848 0.686 8e-93
Q40746284 Aquaporin NIP1-1 OS=Oryza yes no 0.969 0.785 0.681 4e-90
Q0JPT5303 Aquaporin NIP1-2 OS=Oryza no no 0.973 0.739 0.652 6e-85
Q9ATN4282 Aquaporin NIP1-1 OS=Zea m N/A no 0.947 0.773 0.650 2e-84
Q0DK16286 Aquaporin NIP1-3 OS=Oryza no no 1.0 0.804 0.652 9e-83
Q9FIZ9283 Putative aquaporin NIP4-1 no no 1.0 0.812 0.608 8e-79
Q8W036283 Probable aquaporin NIP4-2 no no 0.978 0.795 0.631 9e-79
P49173270 Probable aquaporin NIP-ty N/A no 0.960 0.818 0.622 1e-77
>sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2 Back     alignment and function desciption
 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/232 (77%), Positives = 204/232 (87%), Gaps = 7/232 (3%)

Query: 1   MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
           MAE+LGTYF+IFAGCA+V VN  ++K V+LPGI+IVWGL VMVLVYSLGHISGAHFNP+V
Sbjct: 55  MAEVLGTYFLIFAGCAAVAVNTQHDKAVTLPGIAIVWGLTVMVLVYSLGHISGAHFNPAV 114

Query: 61  TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF---QE----KQDQFAGTLPAGSN 113
           TIA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF   Q+    K D F GTLP+GSN
Sbjct: 115 TIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCSGKHDVFVGTLPSGSN 174

Query: 114 IQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARS 173
           +Q+FV+EFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNV+ AGP++GASMNP RS
Sbjct: 175 LQSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVIIAGPVSGASMNPGRS 234

Query: 174 LGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 225
           LGPA+V S Y+GLWIYIV+P +GA +GAWVYNMVRYTDKPLREITKS SFLK
Sbjct: 235 LGPAMVYSCYRGLWIYIVSPIVGAVSGAWVYNMVRYTDKPLREITKSGSFLK 286
Water channel probably required to promote glycerol permeability and water transport across cell membranes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZW1|NIP11_ARATH Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|P08995|NO26_SOYBN Nodulin-26 OS=Glycine max PE=1 SV=2 Back     alignment and function description
>sp|Q40746|NIP11_ORYSJ Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q0JPT5|NIP12_ORYSJ Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2 Back     alignment and function description
>sp|Q9ATN4|NIP11_MAIZE Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q0DK16|NIP13_ORYSJ Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q9FIZ9|NIP41_ARATH Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=3 SV=1 Back     alignment and function description
>sp|Q8W036|NIP42_ARATH Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2 Back     alignment and function description
>sp|P49173|NIP1_NICAL Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
255562536271 Aquaporin NIP1.1, putative [Ricinus comm 1.0 0.848 0.821 1e-110
224116768242 predicted protein [Populus trichocarpa] 0.978 0.929 0.826 1e-108
224079011226 aquaporin, MIP family, NIP subfamily [Po 0.973 0.991 0.834 1e-108
388506778272 unknown [Lotus japonicus] 0.995 0.841 0.803 1e-104
363806664273 uncharacterized protein LOC100812577 [Gl 0.986 0.831 0.788 1e-104
359483792282 PREDICTED: aquaporin NIP1-2 [Vitis vinif 0.978 0.797 0.795 1e-104
357519149269 Aquaporin NIP1-2 [Medicago truncatula] g 0.986 0.843 0.788 1e-104
356555459273 PREDICTED: nodulin-26-like [Glycine max] 0.982 0.827 0.792 1e-104
307136182276 aquaporin [Cucumis melo subsp. melo] 0.995 0.829 0.794 1e-104
5139541270 nodulin26-like intrinsic protein [Pisum 0.986 0.840 0.788 1e-104
>gi|255562536|ref|XP_002522274.1| Aquaporin NIP1.1, putative [Ricinus communis] gi|223538527|gb|EEF40132.1| Aquaporin NIP1.1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/230 (82%), Positives = 214/230 (93%)

Query: 1   MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
           +AE++GTYF+IFAGC SV VNLN +K+V+LPGISIVWGL VMVLVYS+GHISGAHFNP+V
Sbjct: 42  IAEMVGTYFLIFAGCTSVAVNLNFDKVVTLPGISIVWGLAVMVLVYSVGHISGAHFNPAV 101

Query: 61  TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVME 120
           T+A ATCKRFPWKQVP YI CQV+GSTLAAGT+RL+F  KQD F GT+PAGS++Q+FV+E
Sbjct: 102 TLAFATCKRFPWKQVPAYIACQVIGSTLAAGTIRLIFTGKQDHFTGTMPAGSDMQSFVVE 161

Query: 121 FIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVS 180
           FIITFYLMF+ISGVATDNRAIGELAGLAVG+TVLLNVMFAGPI+GASMNPARSLGPAIVS
Sbjct: 162 FIITFYLMFIISGVATDNRAIGELAGLAVGATVLLNVMFAGPISGASMNPARSLGPAIVS 221

Query: 181 SQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS 230
            +YKGLWIYIV+P LGA AGAWVYNM+RYTDKPLREITKSASFLK  GR+
Sbjct: 222 HKYKGLWIYIVSPTLGAQAGAWVYNMIRYTDKPLREITKSASFLKSTGRA 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116768|ref|XP_002317387.1| predicted protein [Populus trichocarpa] gi|222860452|gb|EEE97999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224079011|ref|XP_002305717.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222848681|gb|EEE86228.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388506778|gb|AFK41455.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|363806664|ref|NP_001242005.1| uncharacterized protein LOC100812577 [Glycine max] gi|255646225|gb|ACU23597.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359483792|ref|XP_002264957.2| PREDICTED: aquaporin NIP1-2 [Vitis vinifera] gi|297740553|emb|CBI30735.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357519149|ref|XP_003629863.1| Aquaporin NIP1-2 [Medicago truncatula] gi|355523885|gb|AET04339.1| Aquaporin NIP1-2 [Medicago truncatula] gi|388495656|gb|AFK35894.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356555459|ref|XP_003546049.1| PREDICTED: nodulin-26-like [Glycine max] Back     alignment and taxonomy information
>gi|307136182|gb|ADN34021.1| aquaporin [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|5139541|emb|CAB45652.1| nodulin26-like intrinsic protein [Pisum sativum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
TAIR|locus:2117184294 NIP1;2 "NOD26-like intrinsic p 0.978 0.765 0.771 8.1e-92
TAIR|locus:2117119296 NLM1 "NOD26-like major intrins 0.978 0.760 0.719 5.3e-88
TAIR|locus:2156020283 NIP4;1 "NOD26-like intrinsic p 1.0 0.812 0.608 3.1e-74
TAIR|locus:2156025283 NIP4;2 "NOD26-like intrinsic p 0.995 0.809 0.620 6.5e-74
TAIR|locus:2826185323 NIP3;1 "NOD26-like intrinsic p 0.952 0.678 0.575 2.4e-67
TAIR|locus:2040904288 NIP2;1 "NOD26-like intrinsic p 0.960 0.767 0.550 2e-63
TAIR|locus:2025822305 NIP6;1 "NOD26-like intrinsic p 0.913 0.688 0.507 6.3e-53
TAIR|locus:2122829304 NIP5;1 "NOD26-like intrinsic p 0.908 0.687 0.509 7.2e-52
UNIPROTKB|Q6Z2T3298 NIP2-1 "Aquaporin NIP2-1" [Ory 0.973 0.751 0.435 4.1e-49
TAIR|locus:2082385275 NIP7;1 "NOD26-like intrinsic p 0.969 0.810 0.407 1.1e-39
TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 179/232 (77%), Positives = 204/232 (87%)

Query:     1 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
             MAE+LGTYF+IFAGCA+V VN  ++K V+LPGI+IVWGL VMVLVYSLGHISGAHFNP+V
Sbjct:    55 MAEVLGTYFLIFAGCAAVAVNTQHDKAVTLPGIAIVWGLTVMVLVYSLGHISGAHFNPAV 114

Query:    61 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF---QE----KQDQFAGTLPAGSN 113
             TIA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF   Q+    K D F GTLP+GSN
Sbjct:   115 TIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCSGKHDVFVGTLPSGSN 174

Query:   114 IQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARS 173
             +Q+FV+EFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNV+ AGP++GASMNP RS
Sbjct:   175 LQSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVIIAGPVSGASMNPGRS 234

Query:   174 LGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 225
             LGPA+V S Y+GLWIYIV+P +GA +GAWVYNMVRYTDKPLREITKS SFLK
Sbjct:   235 LGPAMVYSCYRGLWIYIVSPIVGAVSGAWVYNMVRYTDKPLREITKSGSFLK 286
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0080170 "hydrogen peroxide transmembrane transport" evidence=IDA
GO:0015105 "arsenite transmembrane transporter activity" evidence=IDA
GO:0015700 "arsenite transport" evidence=IDA
GO:0046685 "response to arsenic-containing substance" evidence=RCA;IMP
GO:0006857 "oligopeptide transport" evidence=RCA
TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025822 NIP6;1 "NOD26-like intrinsic protein 6;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2082385 NIP7;1 "NOD26-like intrinsic protein 7;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40746NIP11_ORYSJNo assigned EC number0.68120.96950.7852yesno
O26206AQPM_METTHNo assigned EC number0.32480.87390.8170yesno
Q8DB17AQPZ_VIBVUNo assigned EC number0.35680.91730.9134yesno
Q89EG9AQPZ_BRAJANo assigned EC number0.35320.88260.8458yesno
Q7MIV9AQPZ_VIBVYNo assigned EC number0.35240.91730.9134yesno
Q8FY85AQPZ_BRUSUNo assigned EC number0.31830.90860.9166yesno
Q88F17AQPZ_PSEPKNo assigned EC number0.35020.88260.8826yesno
Q7N5C1AQPZ_PHOLLNo assigned EC number0.38640.83040.8268yesno
P49173NIP1_NICALNo assigned EC number0.62280.96080.8185N/Ano
Q87MQ5AQPZ_VIBPANo assigned EC number0.34540.88690.8793yesno
Q8LFP7NIP12_ARATHNo assigned EC number0.77150.97820.7653yesno
Q9HWZ3AQPZ_PSEAENo assigned EC number0.34090.89130.8951yesno
Q7NU39AQPZ_CHRVONo assigned EC number0.35450.89130.8951yesno
O28846AQPM_ARCFUNo assigned EC number0.37440.86950.8130yesno
Q7WKG2AQPZ_BORBRNo assigned EC number0.36190.89130.8686yesno
Q7W917AQPZ_BORPANo assigned EC number0.36190.89130.8686yesno
P60925AQPZ_RHOPANo assigned EC number0.35040.95210.9125yesno
Q8EHC1AQPZ_SHEONNo assigned EC number0.33480.89560.8995yesno
Q9C4Z5AQPM_METTMNo assigned EC number0.32480.87390.8170yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XI.3152.1
hypothetical protein (242 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_scaffold_44000008
glycerol kinase (EC-2.7.1.30) (519 aa)
•     • 0.418

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-128
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-108
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 5e-75
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 1e-62
pfam00230218 pfam00230, MIP, Major intrinsic protein 1e-60
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 8e-60
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 1e-58
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 1e-51
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 9e-41
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 4e-31
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 2e-25
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-17
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 2e-17
COG0580 241 COG0580, GlpF, Glycerol uptake facilitator and rel 9e-05
PTZ00016 294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 0.002
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information 
 Score =  363 bits (934), Expect = e-128
 Identities = 169/232 (72%), Positives = 196/232 (84%), Gaps = 7/232 (3%)

Query: 1   MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
           +AE+LGTYF++F GCASVVVN+ N+ +V+LPGI+IVWGL +MVL+YSLGHISGAH NP+V
Sbjct: 58  IAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAV 117

Query: 61  TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF-------QEKQDQFAGTLPAGSN 113
           TIA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF         K D F G+ P GS+
Sbjct: 118 TIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSD 177

Query: 114 IQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARS 173
           +QAFVMEFI+TFYLMF+ISGVATDNRAIGELAGLA+GSTVLLNV+ A P++ ASMNP RS
Sbjct: 178 LQAFVMEFIVTFYLMFIISGVATDNRAIGELAGLAIGSTVLLNVLIAAPVSSASMNPGRS 237

Query: 174 LGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 225
           LGPA+V   YKG+WIYIVAP LGA AGAWVYN VRYTDKPLREITKS SFLK
Sbjct: 238 LGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREITKSGSFLK 289

Length = 296
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 230
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00184 296 aquaporin NIP1; Provisional 99.67
PLN00026 298 aquaporin NIP; Provisional 99.66
PLN00183 274 putative aquaporin NIP7; Provisional 99.63
PLN00166 250 aquaporin TIP2; Provisional 99.57
PLN00167 256 aquaporin TIP5; Provisional 99.57
PLN00182 283 putative aquaporin NIP4; Provisional 99.56
cd00333 228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.55
PTZ00016 294 aquaglyceroporin; Provisional 99.54
PRK05420 231 aquaporin Z; Provisional 99.53
PLN00027 252 aquaporin TIP; Provisional 99.52
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.51
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.5
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.43
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.29
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.27
COG2116265 FocA Formate/nitrite family of transporters [Inorg 89.37
PRK11562268 nitrite transporter NirC; Provisional 84.92
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-53  Score=353.79  Aligned_cols=210  Identities=47%  Similarity=0.741  Sum_probs=192.3

Q ss_pred             ChHHHHHHHHHHHHhhhhhccccCCCccChhHHHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHhcCCCCCcccchhh
Q 026947            1 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYIL   80 (230)
Q Consensus         1 laEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~   80 (230)
                      ++||++|++++|++|++...+...+...+.+.+++++|+++++.+++++++||||+|||||+++++.|++++.++..|++
T Consensus        15 ~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~~~Y~v   94 (238)
T KOG0223|consen   15 IAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKISLFRAVAYIV   94 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCcHHHhHHHHH
Confidence            48999999999999999877765455567889999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhhcc----ccceeecCCCCChhHHHHHHHHHHHHHHHhhheeeecCCCcCcchhHHHHHHHHHH
Q 026947           81 CQVLGSTLAAGTLRLLFQEK----QDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLN  156 (230)
Q Consensus        81 aQ~~Ga~~g~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~~~~~~~~~~~~~~~~~l~ig~~v~~~  156 (230)
                      +|++|+++|+.+++.+.+.+    ........++.+..|+++.|++.||.|+++++.+..|+|+. .+.|+.||+++.+.
T Consensus        95 aQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~-~~a~l~IG~~v~~~  173 (238)
T KOG0223|consen   95 AQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS-ELAPLAIGFSVGLN  173 (238)
T ss_pred             HHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc-ccHHHHHHHHHHHH
Confidence            99999999999999999864    12223355667999999999999999999999988888776 78999999999999


Q ss_pred             HHhhcCccCcccchhhhHHHHHhhcCCCceeeeeechhHHHHHHHHHHHHHhcCC
Q 026947          157 VMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTD  211 (230)
Q Consensus       157 ~~~~~~~tG~~lNPA~~~~~~~~~~~~~~~~vy~v~p~~Ga~~a~~l~~~~~~~~  211 (230)
                      +++.+++||++|||||+|||++..++|+++|+||++|++|+++++++|++++.++
T Consensus       174 ~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~  228 (238)
T KOG0223|consen  174 ILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPD  228 (238)
T ss_pred             HHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence            9999999999999999999999999999999999999999999999999998766

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 2e-28
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 4e-25
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 6e-25
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 1e-24
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 1e-24
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 3e-24
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 4e-24
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 1e-23
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 2e-23
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 3e-22
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 3e-22
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 3e-22
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 3e-22
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 4e-22
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 6e-21
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 8e-21
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 1e-20
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 4e-19
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-17
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 2e-17
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 3e-17
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-16
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-15
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-15
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-15
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-15
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-15
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 2e-14
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 1e-10
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 2e-07
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure 
Iteration: 1

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 120/235 (51%), Gaps = 35/235 (14%)
Query: 2   AEILGTYFMIFAGCASVVVNLNNEKIVSLP-----------------GISIVWGLVVMVL 44
           AE++GT+ ++F G  + V+ L        P                  I + + L +  +
Sbjct: 11  AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAV 70
Query: 45  VYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQF 104
           +YSLG ISGAH NP+VTIA  +  RFP ++V PYI+ Q +G+ L +    LLF       
Sbjct: 71  IYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGS----LLFLACVGPA 126
Query: 105 AGTL---------PAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLL 155
           A T+         P     QA + E I TF LM VI GVA D RA    AGL +G TV  
Sbjct: 127 AATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGG 186
Query: 156 NVMFAGPITGASMNPARSLGPAIVSSQYK-GLW----IYIVAPPLGATAGAWVYN 205
            +   G ITG+S+NPAR+ GP +  S     LW    IY++ P +GA A AW+YN
Sbjct: 187 IITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYN 241
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 8e-83
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 6e-05
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-82
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 2e-06
2o9g_A234 Aquaporin Z; integral membrane protein, structural 5e-82
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 1e-04
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 3e-81
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 4e-06
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 4e-81
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 3e-06
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 5e-81
2f2b_A 246 Aquaporin AQPM; protein, integral membrane protein 7e-04
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 6e-80
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 5e-06
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 9e-75
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 2e-05
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 5e-72
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 6e-05
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 7e-67
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 5e-05
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 2e-65
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 6e-07
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 5e-65
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 1e-05
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 7e-62
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 3e-06
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
 Score =  246 bits (630), Expect = 8e-83
 Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 14/224 (6%)

Query: 1   MAEILGTYFMIFAGCASVVVNL-NNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPS 59
           +AE  GT++++F GC S V      E  +   G+++ +GL V+ + Y++G ISG HFNP+
Sbjct: 34  LAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPA 93

Query: 60  VTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEK---------QDQFAGTLPA 110
           V++      RFP   + PY++ QV G+ +AA  L ++   K          + +    P 
Sbjct: 94  VSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPG 153

Query: 111 G-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMN 169
           G S + A ++E I+T + + VI G +T  R     A +A+G  + L  + + P+T  S+N
Sbjct: 154 GYSLVSALLIEIILTAFFLIVILG-STHGRVPAGFAPIAIGLALTLIHLISIPVTNTSVN 212

Query: 170 PARSLGPAIVSSQY--KGLWIYIVAPPLGATAGAWVYNMVRYTD 211
           PARS G A+    +  + LW++ +AP +G  AGA ++ +    D
Sbjct: 213 PARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEKD 256
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.59
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.53
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.5
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.5
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.49
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.48
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.46
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.46
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.46
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.45
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.45
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.43
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.43
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=4.5e-52  Score=358.88  Aligned_cols=212  Identities=33%  Similarity=0.505  Sum_probs=182.4

Q ss_pred             ChHHHHHHHHHHHHhhhhhcccc--CCCccChhHHHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHhcCCCCCcccch
Q 026947            1 MAEILGTYFMIFAGCASVVVNLN--NEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPY   78 (230)
Q Consensus         1 laEf~gT~~lv~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~y   78 (230)
                      ++||+||++|+|+||++++....  +....+++.++++||+++++.+++++++||||+|||||+++++.|+++|.+++.|
T Consensus        56 lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~Y  135 (340)
T 3iyz_A           56 TAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFY  135 (340)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHH
Confidence            48999999999999998764321  2223467889999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHhhccccceee---cCCCCChhHHHHHHHHHHHHHHHhhheeeecCCC-cCcchhHHHHHHHH
Q 026947           79 ILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA-IGELAGLAVGSTVL  154 (230)
Q Consensus        79 i~aQ~~Ga~~g~~~~~~~~~~~~~~~~~---~~~~~s~~~~~~~E~~~T~~l~~~~~~~~~~~~~-~~~~~~l~ig~~v~  154 (230)
                      |++|++||++|+.+++.++++......+   +.+..+..++++.|+++||+|+++++.+.++++. .....|+.||+++.
T Consensus       136 iiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~~~~~pl~IGl~v~  215 (340)
T 3iyz_A          136 ITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVA  215 (340)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCCcccchhhHHHHHHH
Confidence            9999999999999999988754322111   2344588899999999999999999997544443 23568999999998


Q ss_pred             HHHHhhcCccCcccchhhhHHHHHhhcCCCceeeeeechhHHHHHHHHHHHHHhcCCC
Q 026947          155 LNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDK  212 (230)
Q Consensus       155 ~~~~~~~~~tG~~lNPA~~~~~~~~~~~~~~~~vy~v~p~~Ga~~a~~l~~~~~~~~~  212 (230)
                      +.+..++++||++|||||+|||+++.++|.++|+||++|++|+++|+++|++++.++.
T Consensus       216 i~~~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~  273 (340)
T 3iyz_A          216 IGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDV  273 (340)
T ss_pred             HHHHhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCCh
Confidence            8888888999999999999999999999999999999999999999999999876543
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 230
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 2e-45
d1ymga1 234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 0.001
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 2e-42
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 0.001
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-40
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 1e-38
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 0.003
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  149 bits (377), Expect = 2e-45
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 1   MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
            AE   + F +F G  + +        + +  +++ +GL +  LV ++GHISGAH NP+V
Sbjct: 9   CAEFFASLFYVFFGLGASLRWAPGP--LHVLQVALAFGLALATLVQAVGHISGAHVNPAV 66

Query: 61  TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSNIQAF 117
           T A     +    +   Y++ Q+LG+   A  L  +               P  S  QA 
Sbjct: 67  TFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQAT 126

Query: 118 VMEFIITFYLMFVISGVATDNR-AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGP 176
           ++E  +T   +  I     + R        LAVG ++ L  +F    TGA MNPARS  P
Sbjct: 127 IVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 186

Query: 177 AIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKG 226
           AI++  +   W+Y V P +GA  G+ +Y+ + +    L+ +++  S LKG
Sbjct: 187 AILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVSERLSILKG 234
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.56
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.46
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.41
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.4
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-50  Score=332.94  Aligned_cols=212  Identities=29%  Similarity=0.452  Sum_probs=183.9

Q ss_pred             ChHHHHHHHHHHHHhhhhhccccCCCccChhHHHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHhcCCCCCcccchhh
Q 026947            1 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYIL   80 (230)
Q Consensus         1 laEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~   80 (230)
                      ++||+||++++|+++++...+...  ..+...++++||+++++++++++++||||+|||||+++++.|++++++.+.|++
T Consensus         9 laEf~GT~~lvf~g~gs~~~~~~~--~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i~~~~~~~Yi~   86 (234)
T d1ymga1           9 CAEFFASLFYVFFGLGASLRWAPG--PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMV   86 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCC-C--HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCC--CcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCCChhheeeeee
Confidence            489999999999999987644332  345677899999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhhccccce---eecCCCCChhHHHHHHHHHHHHHHHhhheeeecCCCc-CcchhHHHHHHHHHH
Q 026947           81 CQVLGSTLAAGTLRLLFQEKQDQF---AGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAI-GELAGLAVGSTVLLN  156 (230)
Q Consensus        81 aQ~~Ga~~g~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~E~~~T~~l~~~~~~~~~~~~~~-~~~~~l~ig~~v~~~  156 (230)
                      +|++||++|+++++.++++.....   ..+.|..+..++++.|++.|++++++++.+.++++.. ....++.+|+.+.+.
T Consensus        87 aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~~~~~~~l~ig~~v~~~  166 (234)
T d1ymga1          87 AQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLG  166 (234)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCSCCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCccCcCcceeEeehHHHHHH
Confidence            999999999999999987543322   2244566888999999999999999999876544432 346789999999999


Q ss_pred             HHhhcCccCcccchhhhHHHHHhhcCCCceeeeeechhHHHHHHHHHHHHHhcCCCCc
Q 026947          157 VMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPL  214 (230)
Q Consensus       157 ~~~~~~~tG~~lNPA~~~~~~~~~~~~~~~~vy~v~p~~Ga~~a~~l~~~~~~~~~~~  214 (230)
                      ....++.||+++|||||+||+++.++|+++|+||++|++|+++|+++|++++.++.++
T Consensus       167 ~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~  224 (234)
T d1ymga1         167 HLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKS  224 (234)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCC
T ss_pred             HHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCcc
Confidence            9999999999999999999999999999999999999999999999999988655443
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure