Citrus Sinensis ID: 026959

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEKEPEDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPSSVSS
cEEccccccEEEcccEEEccccccccccHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccHHcccccEEEcccccEEEEEEcccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccHHHHHHcccccccccccccccccccHHHccccccccccccc
ccEcccccccEEccEEEcccccccccccHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccccccccccEEEEEEEEHcccccccccccccccccccccccHHHHHHcccEEccccccEEEEEEEccccccccccccccccEEEEEEEEEcEEEEEccccccccccccccccccccHHHHHHHcccccccccEEEcccccccccHHHccccccccccc
mvadnesgkSIASEvrtssgmflSKAQDEIVASIEARIAAwtflppengeAMQILHYehgqkyephfDFFRDKMNQQLGGHRIATVLMYLSHVekggetvfpnsevsqsrdgnwsecarrgyavkpmkgdALLFFslhpdastdstslhgscpviegekwsATKWIHvrnfdkpekepedddcvdedlNCVVWAkageckknplymvgskssrgycrksckvckpssvss
mvadnesgksiasevrtssgmflSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGEtvfpnsevsqsrdgNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDkpekepedddcvDEDLNCVVWAkageckknplymvgskssrgycrksckvckpssvss
MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFdkpekepedddcvdedLNCVVWAKAGECKKNPLYMVGSKSSRGYCRksckvckpssvss
**************************QDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVF************WSECARRGYAVKPMKGDALLFFSLHPD******SLHGSCPVIEGEKWSATKWIHVRNF***********CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCK*********
MVADN**GKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFD**************DLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKV*KP*****
**************VRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPN**********WSECARRGYAVKPMKGDALLFFSLHPDA********GSCPVIEGEKWSATKWIHVRNFDK**********VDEDLNCVVWAKAGECKKNPLYMVGS*********************
********KSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEKEPEDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCK******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEKEPEDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPSSVSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query230 2.2.26 [Sep-21-2011]
P54001534 Prolyl 4-hydroxylase subu yes no 0.682 0.294 0.363 3e-24
P16924516 Prolyl 4-hydroxylase subu yes no 0.682 0.304 0.374 4e-24
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.660 0.284 0.347 4e-22
Q60715534 Prolyl 4-hydroxylase subu no no 0.621 0.267 0.363 1e-21
Q60716537 Prolyl 4-hydroxylase subu yes no 0.682 0.292 0.340 2e-21
O15460535 Prolyl 4-hydroxylase subu no no 0.682 0.293 0.340 4e-21
Q5RAG8534 Prolyl 4-hydroxylase subu no no 0.621 0.267 0.357 6e-21
P13674534 Prolyl 4-hydroxylase subu yes no 0.621 0.267 0.357 6e-21
Q1RMU3534 Prolyl 4-hydroxylase subu no no 0.621 0.267 0.357 8e-21
Q20065539 Prolyl 4-hydroxylase subu yes no 0.682 0.291 0.335 8e-21
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function desciption
 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 91/179 (50%), Gaps = 22/179 (12%)

Query: 2   VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
           V D E+GK   ++ R S   +LS  +D +V+ I  RI   T L     E +Q+ +Y  G 
Sbjct: 365 VHDPETGKLTTAQYRVSKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGG 424

Query: 62  KYEPHFDFFR----DKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSEC 117
           +YEPHFDF R    D   +   G+RIAT L Y+S V  GG TVFP               
Sbjct: 425 QYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFPEV------------- 471

Query: 118 ARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN--FDKP 174
              G +V P KG A+ +++L      D ++ H +CPV+ G KW + KW+H R   F +P
Sbjct: 472 ---GASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRP 527
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
255552788311 prolyl 4-hydroxylase alpha subunit, puta 0.969 0.717 0.795 1e-103
50845214316 prolyl 4-hydroxylase [Dianthus caryophyl 0.969 0.705 0.783 2e-99
224141325308 oxidoreductase, 2OG-Fe(II) oxygenase fam 0.969 0.724 0.764 5e-99
225452614316 PREDICTED: prolyl 4-hydroxylase subunit 0.969 0.705 0.768 8e-99
356550516318 PREDICTED: prolyl 4-hydroxylase subunit 0.969 0.701 0.768 3e-98
356572148319 PREDICTED: prolyl 4-hydroxylase subunit 0.969 0.699 0.76 3e-98
449522594313 PREDICTED: prolyl 4-hydroxylase subunit 0.969 0.712 0.746 6e-98
449461905295 PREDICTED: prolyl 4-hydroxylase subunit 0.969 0.755 0.741 7e-98
255637501318 unknown [Glycine max] 0.969 0.701 0.764 2e-97
215490183318 type 2 proly 4-hydroxylase [Nicotiana ta 0.947 0.685 0.746 7e-97
>gi|255552788|ref|XP_002517437.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223543448|gb|EEF44979.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/225 (79%), Positives = 202/225 (89%), Gaps = 2/225 (0%)

Query: 1   MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHG 60
           MVADNESGKSI SEVRTSSGMF++KAQDEIVA IEARIAAWTFLP ENGE+MQILHYEHG
Sbjct: 85  MVADNESGKSIESEVRTSSGMFIAKAQDEIVADIEARIAAWTFLPEENGESMQILHYEHG 144

Query: 61  QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSE--VSQSRDGNWSECA 118
           QKYEPHFD+F DK NQ+LGGHR+ATVLMYLS+VEKGGETVFPN+E  +SQ ++ +WS+CA
Sbjct: 145 QKYEPHFDYFHDKANQELGGHRVATVLMYLSNVEKGGETVFPNAEGKLSQPKEDSWSDCA 204

Query: 119 RRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEKEP 178
           + GYAVKP KGDALLFFSLHPDA+TDS SLHGSCPVIEGEKWSATKWIHVR+F+K  K+ 
Sbjct: 205 KGGYAVKPEKGDALLFFSLHPDATTDSDSLHGSCPVIEGEKWSATKWIHVRSFEKSFKQL 264

Query: 179 EDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVC 223
              DCVDE+ +C +WAKAGECKKNPLYM+GS  + GYCRKSCKVC
Sbjct: 265 GKGDCVDENDHCPLWAKAGECKKNPLYMIGSGGANGYCRKSCKVC 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|50845214|gb|AAT84604.1| prolyl 4-hydroxylase [Dianthus caryophyllus] Back     alignment and taxonomy information
>gi|224141325|ref|XP_002324024.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Populus trichocarpa] gi|222867026|gb|EEF04157.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225452614|ref|XP_002281420.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296087745|emb|CBI35001.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356550516|ref|XP_003543632.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356572148|ref|XP_003554232.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Glycine max] Back     alignment and taxonomy information
>gi|449522594|ref|XP_004168311.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449461905|ref|XP_004148682.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255637501|gb|ACU19077.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|215490183|dbj|BAG86625.1| type 2 proly 4-hydroxylase [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.921 0.736 0.657 3.9e-76
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.930 0.718 0.601 1.5e-67
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.926 0.712 0.567 2e-63
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.734 0.588 0.574 1.2e-51
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.734 0.582 0.591 1.2e-51
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.739 0.588 0.560 1.5e-49
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.739 0.584 0.560 3.2e-49
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.704 0.572 0.479 3e-37
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.647 0.517 0.487 3.2e-33
TAIR|locus:2131884291 AT4G25600 [Arabidopsis thalian 0.8 0.632 0.396 3.7e-32
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 144/219 (65%), Positives = 176/219 (80%)

Query:     1 MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHG 60
             +VAD +SG+S  SEVRTSSGMFL+K QD+IVA++EA++AAWTFLP ENGEA+QILHYE+G
Sbjct:    69 VVADVDSGESEDSEVRTSSGMFLTKRQDDIVANVEAKLAAWTFLPEENGEALQILHYENG 128

Query:    61 QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPN--SEVSQSRDGNWSECA 118
             QKY+PHFD+F DK   +LGGHRIATVLMYLS+V KGGETVFPN   +  Q +D +WS+CA
Sbjct:   129 QKYDPHFDYFYDKKALELGGHRIATVLMYLSNVTKGGETVFPNWKGKTPQLKDDSWSKCA 188

Query:   119 RRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFXXXXXXX 178
             ++GYAVKP KGDALLFF+LH + +TD  SLHGSCPVIEGEKWSAT+WIHVR+F       
Sbjct:   189 KQGYAVKPRKGDALLFFNLHLNGTTDPNSLHGSCPVIEGEKWSATRWIHVRSFGKKKLVC 248

Query:   179 XXXXXXXXXLNCVVWAKAGECKKNPLYMVGSKSSRGYCR 217
                       +C  WA AGEC+KNP+YMVGS++S G+CR
Sbjct:   249 VDDHE-----SCQEWADAGECEKNPMYMVGSETSLGFCR 282
GO:0005506 "iron ion binding" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131884 AT4G25600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVII.795.1
oxidoreductase, 2OG-Fe(II) oxygenase family protein (268 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.IV.4171.1
proline dehydrogenase (EC-1.5.99.8) (435 aa)
     •  0.899
gw1.I.4241.1
hypothetical protein (326 aa)
     •  0.899
gw1.123.99.1
proline dehydrogenase (EC-1.5.99.8) (440 aa)
     •  0.899
estExt_fgenesh4_pm.C_LG_VI0132
pyrroline-5-carboxylate reductase (EC-1.5.1.2) (279 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 1e-115
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 4e-38
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 4e-10
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 6e-10
smart0025433 smart00254, ShKT, ShK toxin domain 4e-05
pfam0154937 pfam01549, ShK, ShK domain-like 4e-04
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  331 bits (850), Expect = e-115
 Identities = 153/226 (67%), Positives = 181/226 (80%), Gaps = 3/226 (1%)

Query: 1   MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHG 60
           MVADN+SGKS+ SEVRTSSGMFL K QD +V+ IE RIAAWTFLP EN E +QIL YEHG
Sbjct: 83  MVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHG 142

Query: 61  QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSE--VSQSRDGNWSECA 118
           QKYEPHFD+F DK+NQ LGGHR ATVLMYLS V+KGGETVFPN+E   +Q +D  +SECA
Sbjct: 143 QKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECA 202

Query: 119 RRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEKEP 178
            +G AVKP+KGDA+LFFSLH D   D  SLHGSCPVIEGEKWSA KWIH+R+++ P   P
Sbjct: 203 HKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEHPPVVP 262

Query: 179 EDDD-CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVC 223
           +D + C D+  +C  WA AGEC+KNP+YMVG++ + G CRKSC VC
Sbjct: 263 KDTEGCADKSAHCAEWAAAGECEKNPVYMVGAEGAPGNCRKSCGVC 308

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|214586 smart00254, ShKT, ShK toxin domain Back     alignment and domain information
>gnl|CDD|216565 pfam01549, ShK, ShK domain-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 230
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 99.97
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.87
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.68
PHA02813 354 hypothetical protein; Provisional 99.64
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.63
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.2
smart0025433 ShKT ShK toxin domain. ShK toxin domain 99.07
PF0154938 ShK: ShK domain-like; InterPro: IPR003582 The ShK 98.76
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.58
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.53
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.36
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 98.3
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 97.95
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 97.83
PHA02866 333 Hypothetical protein; Provisional 97.68
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 97.19
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 96.9
KOG3844 476 consensus Predicted component of NuA3 histone acet 96.87
TIGR02466201 conserved hypothetical protein. This family consis 96.76
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 96.41
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 95.52
PHA02923 315 hypothetical protein; Provisional 94.85
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 94.47
COG3826236 Uncharacterized protein conserved in bacteria [Fun 94.3
KOG3371 243 consensus Uncharacterized conserved protein [Funct 91.26
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 89.63
PHA02985271 hypothetical protein; Provisional 87.74
PLN02485329 oxidoreductase 85.92
PF06822266 DUF1235: Protein of unknown function (DUF1235); In 85.66
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 84.98
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 84.88
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.24
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 82.49
COG5285299 Protein involved in biosynthesis of mitomycin anti 82.26
COG4340226 Uncharacterized protein conserved in bacteria [Fun 80.64
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-70  Score=490.35  Aligned_cols=224  Identities=67%  Similarity=1.189  Sum_probs=205.7

Q ss_pred             CcccCCCCceeecCeEecceeeeCCCCcHHHHHHHHHHHHhcCCCCCCCCcceEEecCCCCCccccccCCCccccccCCC
Q 026959            1 MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGG   80 (230)
Q Consensus         1 ~vv~~~~g~~~~~~~RtS~~~~l~~~~~~v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~   80 (230)
                      +|+++.+|+++.+++|||+++||+..+++++++|++||++++++|.++.|+|||+||++||+|.+|+|++.+..+...++
T Consensus        83 ~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg  162 (310)
T PLN00052         83 MVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGG  162 (310)
T ss_pred             eeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCC
Confidence            47788888888899999999999988899999999999999999999999999999999999999999997644445689


Q ss_pred             ceeEEEEEeccCCCCCcceeccCCcc--cccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccc
Q 026959           81 HRIATVLMYLSHVEKGGETVFPNSEV--SQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGE  158 (230)
Q Consensus        81 ~R~~T~liYLnd~~~GGeT~Fp~~~~--~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~  158 (230)
                      +|++||||||||+++||||+||.++.  .++.+..|++|++.+++|+|+||+||||+|+++||+.|++++|++|||++|+
T Consensus       163 ~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~  242 (310)
T PLN00052        163 HRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGE  242 (310)
T ss_pred             ceeEEEEEEeccCCCCCceecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCe
Confidence            99999999999999999999999753  3455678999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeEEeccCCCCCCC-CCCCccccCCcChHhHHhcCCCCCCccccccccCCCchhhhhcCcCC
Q 026959          159 KWSATKWIHVRNFDKPEKE-PEDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCK  224 (230)
Q Consensus       159 K~~~~~Wi~~~~~~~~~~~-~~~~~C~d~~~~C~~Wa~~geC~~np~~M~~~~~~~~~C~~sC~~C~  224 (230)
                      ||++|+|||..++..+-.. .++..|.|.++.|+.||+.|||++||.||+|+++..++|+|||+.|.
T Consensus       243 Kw~atkWi~~~~~~~~~~~~~~~~~C~d~~~~C~~Wa~~GeC~~Np~yM~g~~~~~~~C~~SC~~C~  309 (310)
T PLN00052        243 KWSAPKWIHIRSYEHPPVVPKDTEGCADKSAHCAEWAAAGECEKNPVYMVGAEGAPGNCRKSCGVCD  309 (310)
T ss_pred             EEEEEEeeecccccCCCcCCccCCCCcCCcccChhHhhCCccccChHhhcCCCCCCChhhccccccC
Confidence            9999999999998754221 24678999999999999999999999999999999999999999997

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>smart00254 ShKT ShK toxin domain Back     alignment and domain information
>PF01549 ShK: ShK domain-like; InterPro: IPR003582 The ShK toxin domain is found in metridin, a toxin from Metridium senile (brown sea anemone) and in ShK, a structurally defined polypeptide from the sea anemone Stoichactis helianthus (Stichodactyla helianthus) (Caribbean sea anemone) Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3371 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PHA02985 hypothetical protein; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 1e-58
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 1e-58
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 1e-58
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 5e-57
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 7e-26
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 101/169 (59%), Positives = 131/169 (77%), Gaps = 3/169 (1%)
Query: 2   VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
           V DNESGKS+ SE+RTS+G + +K +D +++ IE R+A  T +P EN E +Q+LHY  GQ
Sbjct: 59  VVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQ 118
Query: 62  KYEPHFDFFRDKMNQ--QLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECAR 119
           KYEPH+D+F D +N   + GG R+ T+LMYL+ VE+GGETV PN+E   + DG WSECA+
Sbjct: 119 KYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDG-WSECAK 177
Query: 120 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 168
           RG AVKP+KGDAL+F+SL PD S D  SLHGSCP ++G+KWSATKWIHV
Sbjct: 178 RGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 6e-78
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 4e-67
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 1e-09
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  232 bits (594), Expect = 6e-78
 Identities = 101/174 (58%), Positives = 131/174 (75%), Gaps = 3/174 (1%)

Query: 1   MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHG 60
            V DNESGKS+ SE+RTS+G + +K +D +++ IE R+A  T +P EN E +Q+LHY  G
Sbjct: 49  SVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDG 108

Query: 61  QKYEPHFDFFRDKMNQ--QLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECA 118
           QKYEPH+D+F D +N   + GG R+ T+LMYL+ VE+GGETV PN+E   + DG WSECA
Sbjct: 109 QKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDG-WSECA 167

Query: 119 RRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFD 172
           +RG AVKP+KGDAL+F+SL PD S D  SLHGSCP ++G+KWSATKWIHV    
Sbjct: 168 KRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIG 221
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.94
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.76
2k72_A37 Matrix metalloproteinase-23; toxin, metalloproteas 99.5
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 98.97
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.41
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 96.14
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 96.13
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 95.89
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 95.45
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 92.0
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 90.73
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 89.23
2lg4_A40 Aurelin; antimicrobial protein; NMR {Aurelia aurit 88.64
1bgk_A37 BGK; neurotoxin, potassium channel inhibitor; NMR 84.74
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 84.15
1bei_A35 SHK-DNP22, potassium channel toxin SHK; potassium 81.58
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 80.18
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=1.8e-45  Score=313.95  Aligned_cols=171  Identities=58%  Similarity=1.075  Sum_probs=154.7

Q ss_pred             cccCCCCceeecCeEecceeeeCCCCcHHHHHHHHHHHHhcCCCCCCCCcceEEecCCCCCccccccCCCccccc--cCC
Q 026959            2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQ--QLG   79 (230)
Q Consensus         2 vv~~~~g~~~~~~~RtS~~~~l~~~~~~v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~--~~~   79 (230)
                      |+++.+|+.+.+++|+|.++||+..+++++++|++||++++++|+...|++||+||++||+|++|+|++....+.  ..+
T Consensus        50 v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~ri~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~  129 (224)
T 2jig_A           50 VVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHG  129 (224)
T ss_dssp             EEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHHHHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCC
T ss_pred             eecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHHHHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccC
Confidence            567777888889999999999998778999999999999999999999999999999999999999998753221  345


Q ss_pred             CceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccce
Q 026959           80 GHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEK  159 (230)
Q Consensus        80 ~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K  159 (230)
                      ++|++|+||||||+++||||+||.+. .++.+..+++|.+.+++|+|++|+||||+|+++||+.|+.++|++|||++|+|
T Consensus       130 ~~R~~T~l~YLnd~~~GGeT~Fp~~~-~~~~~~~~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K  208 (224)
T 2jig_A          130 GQRVVTMLMYLTTVEEGGETVLPNAE-QKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDK  208 (224)
T ss_dssp             SCEEEEEEEECSCCSEECCEEETTSS-SCCCSTTSCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEE
T ss_pred             CCeEEEEEEEecCCCCCCceeCCCcc-cccccccccccccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceE
Confidence            89999999999999999999999875 23456678999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeEEeccCCC
Q 026959          160 WSATKWIHVRNFDK  173 (230)
Q Consensus       160 ~~~~~Wi~~~~~~~  173 (230)
                      |++++||+..++..
T Consensus       209 ~~~~~Wi~~~~~~~  222 (224)
T 2jig_A          209 WSATKWIHVAPIGG  222 (224)
T ss_dssp             EEEEEEEESSCCCC
T ss_pred             EEEEEeEEcCCcCC
Confidence            99999999988764
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2k72_A Matrix metalloproteinase-23; toxin, metalloprotease, MMP23, potassium channel, cleavage on PAIR of basic residues, glycoprotein, hydrolase; NMR {Synthetic} Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita} Back     alignment and structure
>1bgk_A BGK; neurotoxin, potassium channel inhibitor; NMR {Bunodosoma granulifera} SCOP: g.19.1.1 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>1bei_A SHK-DNP22, potassium channel toxin SHK; potassium channel inhibitor, SEA anemone, immunosuppressant neurotoxin; HET: DNP; NMR {Stichodactyla helianthus} SCOP: g.19.1.1 PDB: 1roo_A 2k9e_A* 1c2u_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 96.47
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 95.48
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 90.79
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 84.6
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Syringomycin biosynthesis enzyme 2, SyrB2
species: Pseudomonas syringae pv. syringae [TaxId: 321]

Probab=96.47  E-value=0.0064  Score=50.14  Aligned_cols=124  Identities=15%  Similarity=0.118  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhcCCCCCCCCcceEEecCCCCCccccccCCCcccc--------ccCCCceeEEEEEeccCCCC-Ccce-ec
Q 026959           32 ASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN--------QQLGGHRIATVLMYLSHVEK-GGET-VF  101 (230)
Q Consensus        32 ~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~--------~~~~~~R~~T~liYLnd~~~-GGeT-~F  101 (230)
                      .+|.+.|+.++|-.+......-+.+...+..+.||.|...-...        ........+|+.|+|.|+.+ .|.+ ++
T Consensus        80 p~il~~v~~llG~~~~~~~~~~~~k~p~~~~~~wHqD~~y~~~~~~~~~~~~~~~~~~~~vtvwiaL~D~~~enG~l~vi  159 (308)
T d2fcta1          80 PEICDRVESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWPENEEFGGTITVWTAFTDANIANGCLQFI  159 (308)
T ss_dssp             HHHHHHHHHHHCSCEEEEEEEEEEECTTCCEECCBCCSSSCTTTSSCSEECCTTSCCCSCEEEEEESSCBCTTBTCEEEE
T ss_pred             chhhhHHHHhhcccceeeecccccccccccccccccccccccCCCCcccccCCCCCCCceEEEEEecccccccceeEEEe
Confidence            34566677777633221112223455555668899997542211        01124578999999999763 4555 45


Q ss_pred             cCCccc---c-------cCC-------------------------CCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCC
Q 026959          102 PNSEVS---Q-------SRD-------------------------GNWSECARRGYAVKPMKGDALLFFSLHPDASTDST  146 (230)
Q Consensus       102 p~~~~~---~-------~~~-------------------------~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~  146 (230)
                      |.....   .       ..+                         .....-...-+.+.-++|++|||.         ..
T Consensus       160 PGSHk~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lkaGdvlif~---------~~  230 (308)
T d2fcta1         160 PGTQNSMNYDETKRMTYEPDANNSVVKDGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFW---------ST  230 (308)
T ss_dssp             TTCTTSCCBCTTSCCCCCTTTCSSCEETTEEEEBTTBCGGGGBSSTTCCCCGGGCEEECBCTTEEEEEE---------TT
T ss_pred             eCCccCCccccccccccCcccccccccccccccccccccccccccccccccccceEEEeeCCCeEEEEC---------CC
Confidence            643210   0       000                         000000012355667899999997         48


Q ss_pred             cccCCcccc--cc-ceEEEEE
Q 026959          147 SLHGSCPVI--EG-EKWSATK  164 (230)
Q Consensus       147 ~~H~g~pv~--~G-~K~~~~~  164 (230)
                      ++|++-|-.  +. .++.++.
T Consensus       231 l~HgS~pN~~~S~~~R~~~~~  251 (308)
T d2fcta1         231 LMHASYPHSGESQEMRMGFAS  251 (308)
T ss_dssp             SEEEECCBCSSSSSCEEEEEE
T ss_pred             ccccCCCCCCCCCCceEEEEE
Confidence            999999986  22 3555544
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure