Citrus Sinensis ID: 026987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MAAGLSMLKFSVLLGLLSNLNLGLWPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEEGFAI
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccccEEEEEEEEccccccccccccccEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHHHHccccHHHHHHHccccccccEEEEEEccccccccccEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccccEEEEEcEEEEEEccccccccccEEEEEEEEcHHHcccccccccEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHccccEccccccccccccEEEEEEEcccccccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
MAAGLSMLKFSVLLGLLSNlnlglwpesskglkifpptcnriecpsfetvhvgngfeirhynssmwmstspiqdislVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVitevlpsdgpfcessftvsfyvpkvnqanpppakglhiQQWKATYAAVRQFsgfvsdsnIGEEAAALQASLAGTNWAAAIEKrraedptssyivaqynspfefyNRVNEIWLLFDLEEGFAI
Flexible Loop (DISEMBL)
MAAGLSMLKFSVLLGLLSNLNLGLWPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKrraedptssYIVAQYNSPFEFYNRVNEIWLLFDLEEGFAI
Low Complexity Region (SEG)
MAAGlsmlkfsvllgllsnlnlglWPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEEGFAI
Disordered region (IsUnstruct)
*****SMLKFSVLLGLLSNLNLGLWPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKR*****TSSYIVAQYNSPFEFYNRVNEIWLLFDLEE****
Disordered Region (DISOPRED)
******M*KFSVLLGLLSNLNLGLWPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVL*******E*SFTVSFYVPK************HIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEE****
Disordered Region (DISEMBL)
MAAGLSMLKFSVLLGLLSNLNLGLWPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEEGFAI
Disordered Region (DISPRO)
*AAGLSMLKFSVLLGLLSNLNLGLWPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEEGF**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAGLSMLKFSVLLGLLSNLNLGLWPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEEGFAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q9Y5Z4	205	Heme-binding protein 2 OS	yes	no	0.678	0.760	0.398	1e-23
Q9WU63	205	Heme-binding protein 2 OS	yes	no	0.678	0.760	0.369	6e-21
Q6NU05	190	Heme-binding protein 1 OS	N/A	no	0.686	0.831	0.263	2e-10
Q6DJ66	190	Heme-binding protein 1 OS	no	no	0.686	0.831	0.251	2e-10
Q5ISC6	189	Heme-binding protein 1 OS	no	no	0.626	0.761	0.262	4e-10
Q9NRV9	189	Heme-binding protein 1 OS	no	no	0.626	0.761	0.262	8e-09
Q9R257	190	Heme-binding protein 1 OS	no	no	0.630	0.763	0.243	6e-08
Q148C9	191	Heme-binding protein 1 OS	no	no	0.626	0.753	0.256	3e-07
Q5ZMB2	189	Heme-binding protein 1 OS	no	no	0.578	0.703	0.255	1e-06
Q9SR77	309	Heme-binding-like protein	no	no	0.591	0.440	0.320	1e-05

>sp|Q9Y5Z4|HEBP2_HUMAN Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 56  FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
           +EIRHY  + W+STS ++ +    A +TGF +L  YIQGKNE E  I+MTAPV + V P 
Sbjct: 38  YEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG 96

Query: 116 DGPFCESSFTVSFYVPKVNQANPPP--AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
            GPF ES+ T+S Y+P   Q +PP      + I+        VR F GF S     E+  
Sbjct: 97  SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLL 156

Query: 174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
            L AS+   +     EK         Y  A YNSP +  NR NE+WL+
Sbjct: 157 TL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 195

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin.
Homo sapiens (taxid: 9606)

>sp|Q9WU63|HEBP2_MOUSE Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=1 SV=1

 Score =  100 bits (250), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 12/168 (7%)

Query: 56  FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
           +EIRHY  + W+ST  ++ +    A +TGF +L  YIQGKNE E  I++TAPV + V P 
Sbjct: 38  YEIRHYGPAKWVSTC-VESLDWDSAIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPG 96

Query: 116 DGPFCESSFTVSFYVPKVNQANPP-PAKG-LHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
             PF ES+ T+S Y+P   Q +PP P++  + I+        VR F GF S     E+  
Sbjct: 97  SSPFSESTITISLYIPSEQQPDPPRPSESDVFIEDRAEMTVFVRSFDGFSSGQKNQEQLL 156

Query: 174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
            L A++         EK         +  A Y+SPF+  +R NE+WL+
Sbjct: 157 TL-ANILREEGKVFNEK--------VFYTAGYSSPFQLLDRNNEVWLI 195

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin (By similarity). May have low affinity for heme.

Mus musculus (taxid: 10090)

>sp|Q6NU05|HEBP1_XENLA Heme-binding protein 1 OS=Xenopus laevis GN=hebp1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 13/171 (7%)

Query: 53  GNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV 112
           G  FE R Y    ++ST  +      +A++ G L+L  Y+ G N     + MT+PVI   
Sbjct: 28  GVAFEEREYEGGKFISTE-VSGKPFDEASKEGVLRLLKYVGGSNNKSAGMGMTSPVIINS 86

Query: 113 LPSDGPFCESSFTVSFYVPKVNQANPP-PAKG-LHIQQWKATYAAVRQFSGFVSDSNIGE 170
            PS+    + +  V   +P   QA+PP P    + I+  ++      QF G+  +++   
Sbjct: 87  YPSENDTLQPNVKVLLRIPSQYQADPPVPTDNTIQIEDRESVTLYSTQFGGYAKEADYVS 146

Query: 171 EAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
            AA L++ L G + +           +  Y+   Y+ P + Y R NE+W +
Sbjct: 147 HAAKLRSCL-GPDISYH---------SDYYMCCGYDPPMKPYGRRNEVWFI 187

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus laevis (taxid: 8355)

>sp|Q6DJ66|HEBP1_XENTR Heme-binding protein 1 OS=Xenopus tropicalis GN=hebp1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 13/171 (7%)

Query: 53  GNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV 112
           G  FE R Y    ++ST  +      +A++   L+L  Y+ G N+    + MT+PV+   
Sbjct: 28  GVAFEEREYEGGKFVSTE-VSGKPFDEASKEAVLRLLKYVGGSNQKYAGMGMTSPVVITS 86

Query: 113 LPSDGPFCESSFTVSFYVPKVNQANP--PPAKGLHIQQWKATYAAVRQFSGFVSDSNIGE 170
            P++    + +  V   +P   QA+P  P    +HI+  ++      QF G+  +++   
Sbjct: 87  YPAENETLQPNVKVLLRIPSQYQADPPVPTDDTIHIEDRESVTFYSTQFGGYAKEADYVS 146

Query: 171 EAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
            AA L++ L G + +           T  Y+   Y+ P + Y R NE+W +
Sbjct: 147 HAAKLRSCL-GPDISYH---------TDHYMCCGYDPPMKPYGRRNEVWFI 187

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ISC6|HEBP1_PIG Heme-binding protein 1 OS=Sus scrofa GN=HEBP1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 68  STSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVS 127
           +T  + D  + +A R    ++  Y+ G N+    + MT P+   V PSDG   +    V 
Sbjct: 42  ATVEMTDKPVDEALREAMPKVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVW 101

Query: 128 FYVPKVNQANP--PPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWA 185
           F +P   Q+NP  P    + I++ ++      QF G+  +++    AA L+ +L G    
Sbjct: 102 FRIPNEFQSNPPVPSDDSIKIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGI--- 158

Query: 186 AAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
                  A   +  Y    Y+ P + Y R NE+WL+
Sbjct: 159 -------ATCRSDVYFCTGYDPPMKPYGRRNEVWLV 187

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Sus scrofa (taxid: 9823)

>sp|Q9NRV9|HEBP1_HUMAN Heme-binding protein 1 OS=Homo sapiens GN=HEBP1 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 68  STSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVS 127
           +T  + D  + +A R    ++  Y  G N+    + MT P+   V P++    +    V 
Sbjct: 42  ATVEVTDKPVDEALREAMPKVAKYAGGTNDKGIGMGMTVPISFAVFPNEDGSLQKKLKVW 101

Query: 128 FYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWA 185
           F +P   Q++PP    K + I++ +       QF G+  +++   +A  L+A+L GT   
Sbjct: 102 FRIPNQFQSDPPAPSDKSVKIEEREGITVYSMQFGGYAKEADYVAQATRLRAALEGT--- 158

Query: 186 AAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
                  A      Y    Y+ P + Y R NEIWLL
Sbjct: 159 -------ATYRGDIYFCTGYDPPMKPYGRRNEIWLL 187

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Homo sapiens (taxid: 9606)

>sp|Q9R257|HEBP1_MOUSE Heme-binding protein 1 OS=Mus musculus GN=Hebp1 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 11/156 (7%)

Query: 68  STSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVS 127
           +T  + D  + +A R    ++  Y+ G N+    + MT PV   + P++    +    V 
Sbjct: 42  ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFALFPNEDGSLQKKLKVW 101

Query: 128 FYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWA 185
           F +P   Q +PP    + + I++ +       QF G+  +++    A  L+ +L GT   
Sbjct: 102 FRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-- 159

Query: 186 AAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
                  A      Y  A Y+ P + Y R NE+WL+
Sbjct: 160 -------ATYQGDVYYCAGYDPPMKPYGRRNEVWLV 188

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Mus musculus (taxid: 10090)

>sp|Q148C9|HEBP1_BOVIN Heme-binding protein 1 OS=Bos taurus GN=HEBP1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 68  STSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVS 127
           +T  + D  + +A R    ++  Y+ G N+    + MT P+   V PSD    +    V 
Sbjct: 42  ATVEVTDKPVDEALREAMPKVMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDLQKKLKVW 101

Query: 128 FYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWA 185
           F +P   Q++PP      + I+  +       QF G+   ++   +AA L+++L  T   
Sbjct: 102 FRIPNKFQSDPPAPSDDSIKIEDREGITVYSTQFGGYAKAADYAAQAAQLRSALEST--- 158

Query: 186 AAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
                  A+  T  Y    Y+ P + Y R NE+WL+
Sbjct: 159 -------AKYQTDFYFCTGYDPPMKPYGRRNEVWLV 187

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Bos taurus (taxid: 9913)

>sp|Q5ZMB2|HEBP1_CHICK Heme-binding protein 1 OS=Gallus gallus GN=HEBP1 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 12/145 (8%)

Query: 79  QATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANP 138
           +A++   L+L  Y+ G N+    + MTAPV     P++    +    V   +P   QA+P
Sbjct: 53  EASKEAALKLLKYVGGSNDKGAGMGMTAPVSITAFPAEDGSLQQKVKVYLRIPNQFQASP 112

Query: 139 --PPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDP 196
             P  + + I++ +       QF G+  + +    AA L+ +L      AA  K      
Sbjct: 113 PCPSDESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLKTALGSE---AAYRK------ 163

Query: 197 TSSYIVAQYNSPFEFYNRVNEIWLL 221
              Y    Y+ P + Y R NE+W +
Sbjct: 164 -DFYFCNGYDPPMKPYGRRNEVWFV 187

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Gallus gallus (taxid: 9031)

>sp|Q9SR77|HBPL1_ARATH Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 23/159 (14%)

Query: 84  GFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTV-------------SFYV 130
            F  L +Y+ GKN  ++ +EMT PV+T  + S G   E +  V             SF +
Sbjct: 157 SFNVLAEYLFGKNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVM 216

Query: 131 PKVNQANPPPAK--GLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAI 188
           P    +N P  K   + IQQ      AV  FSG+V+D  I      L+ +L         
Sbjct: 217 PSKYGSNLPLPKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQND------ 270

Query: 189 EKRRAEDPTSSYIVAQYNSPFEF-YNRVNEIWLLFDLEE 226
           +K R  D   S+ VAQYN PF   + R NE+ L  + +E
Sbjct: 271 KKFRVRDGV-SFEVAQYNPPFTLPFMRRNEVSLEVENKE 308


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,500,738
Number of Sequences: 539616
Number of extensions: 3381441
Number of successful extensions: 6867
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6843
Number of HSP's gapped (non-prelim): 13
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
255578538	234	Heme-binding protein, putative [Ricinus	0.913	0.897	0.729	5e-89
224061347	226	predicted protein [Populus trichocarpa]	0.904	0.920	0.725	3e-85
388493350	227	unknown [Medicago truncatula]	0.960	0.973	0.653	1e-82
225470739	227	PREDICTED: heme-binding protein 2 [Vitis	0.873	0.885	0.741	6e-82
351723865	234	uncharacterized protein LOC100305993 pre	0.882	0.867	0.686	3e-81
356498208	234	PREDICTED: heme-binding protein 2-like [	0.830	0.816	0.729	3e-81
147832981	227	hypothetical protein VITISV_035042 [Viti	0.873	0.885	0.736	6e-81
449438953	220	PREDICTED: heme-binding protein 2-like [	0.934	0.977	0.635	1e-77
312281589	254	unnamed protein product [Thellungiella h	0.856	0.775	0.706	4e-77
356556908	239	PREDICTED: heme-binding protein 2-like [	0.847	0.815	0.670	8e-77

>gi|255578538|ref|XP_002530132.1| Heme-binding protein, putative [Ricinus communis] gi|223530357|gb|EEF32248.1| Heme-binding protein, putative [Ricinus communis]

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 159/218 (72%), Positives = 181/218 (83%), Gaps = 8/218 (3%)

Query: 17  LSNLNLGLWPESS------KGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTS 70
           +S+ N G+W E +      K +  +PPTCNRIECP ++ + VGNG+EIR YNS+ WMSTS
Sbjct: 16  MSSANFGIWNEPNNNGDNVKSIGTYPPTCNRIECPLYDVIEVGNGYEIRSYNSTAWMSTS 75

Query: 71  PIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYV 130
            IQDISLV AT TGFLQLFDYIQGKN Y Q IEMTAPVITEVLPSDGPFCESSFTVSFY+
Sbjct: 76  SIQDISLVDATGTGFLQLFDYIQGKNSYGQQIEMTAPVITEVLPSDGPFCESSFTVSFYI 135

Query: 131 PKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEK 190
           PK NQANPPPAKGLH+Q+WK TYAAVRQFSGFV+DSN+GEEAAALQAS+A T WAAAIEK
Sbjct: 136 PKENQANPPPAKGLHVQRWKQTYAAVRQFSGFVTDSNVGEEAAALQASIADTKWAAAIEK 195

Query: 191 RR--AEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEE 226
               A+  TS Y VAQYNSPFEF +RVNEIW+LFD++E
Sbjct: 196 SHDAADRTTSVYTVAQYNSPFEFDSRVNEIWMLFDVDE 233

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061347|ref|XP_002300435.1| predicted protein [Populus trichocarpa] gi|118487939|gb|ABK95791.1| unknown [Populus trichocarpa] gi|222847693|gb|EEE85240.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 153/211 (72%), Positives = 175/211 (82%), Gaps = 3/211 (1%)

Query: 22  LGLWPESSK--GLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQ 79
            G W + +K  G+ I+PP C  IECP F+ + +GNG+EIR YNSS+WMSTS IQDISLV 
Sbjct: 16  FGPWHDEAKRSGVAIYPPACTSIECPVFDVLQLGNGYEIRRYNSSVWMSTSSIQDISLVD 75

Query: 80  ATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP 139
           ATRTGFL+LFDYIQGKN YE+ IEMTAPVITEV PSDGPFCESSFTVSFYVPK NQANPP
Sbjct: 76  ATRTGFLRLFDYIQGKNSYEEKIEMTAPVITEVSPSDGPFCESSFTVSFYVPKENQANPP 135

Query: 140 PAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSS 199
           PAKGLH+Q+W+ TY AVRQF+GFV+DSN+GEEAAALQASLA T WAAAIEK R  D T+ 
Sbjct: 136 PAKGLHVQRWQPTYVAVRQFNGFVTDSNVGEEAAALQASLADTIWAAAIEKSRP-DSTTV 194

Query: 200 YIVAQYNSPFEFYNRVNEIWLLFDLEEGFAI 230
           Y VAQYNSPFEF NRVNEIW+ F +E+   +
Sbjct: 195 YTVAQYNSPFEFDNRVNEIWMQFYVEDELLV 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493350|gb|AFK34741.1| unknown [Medicago truncatula]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 149/228 (65%), Positives = 177/228 (77%), Gaps = 7/228 (3%)

Query: 1   MAAGLSMLKFSVLLGLLSNLNLGLWPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRH 60
           MA   +  K ++ L L+S    G     +    I P  C RIECP+++ +  GNG+EIR 
Sbjct: 4   MAVTTTTWKLALFLTLISVSLSG-----TLSYDIVP--CKRIECPNYDVIEAGNGYEIRL 56

Query: 61  YNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFC 120
           YNSS+W+S SPIQDISLV+ATRTGFL+LFDYIQGKN Y+Q IEMTAPV++EVLPSDGPFC
Sbjct: 57  YNSSVWISNSPIQDISLVEATRTGFLRLFDYIQGKNNYQQKIEMTAPVLSEVLPSDGPFC 116

Query: 121 ESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLA 180
           ESSF VSFYVPKVNQANPPPAKGLH+Q+WK  YAAV+QF GFV D+NIGEEAAAL+ S+A
Sbjct: 117 ESSFVVSFYVPKVNQANPPPAKGLHVQRWKTVYAAVKQFGGFVKDTNIGEEAAALKDSIA 176

Query: 181 GTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEEGF 228
           GT W++AIE+ R     S Y VAQYN+PFE+ NRVNEIW LFDLE G 
Sbjct: 177 GTKWSSAIEQSRRAGHASVYSVAQYNAPFEYDNRVNEIWFLFDLENGL 224

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470739|ref|XP_002266519.1| PREDICTED: heme-binding protein 2 [Vitis vinifera]

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 149/201 (74%), Positives = 175/201 (87%)

Query: 26  PESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGF 85
           P S K   +FPPTC+RIECP+++ +  GNG+EIR YNS++W+STSPIQDISLV ATR  F
Sbjct: 22  PNSQKSTGLFPPTCSRIECPTYDLIQAGNGYEIRRYNSTVWISTSPIQDISLVDATRDSF 81

Query: 86  LQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLH 145
           LQLFDYIQGKNEY++ IEMTAPVIT+V PSDGPFCESSF VSFYVPK NQANPPPAKGLH
Sbjct: 82  LQLFDYIQGKNEYQEHIEMTAPVITQVSPSDGPFCESSFVVSFYVPKKNQANPPPAKGLH 141

Query: 146 IQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQY 205
           +Q+W   YAAVRQFSGFVSDS +GEEAAAL+ASLAG+ W+AAIEK R +DPTS+Y VAQY
Sbjct: 142 VQKWGPAYAAVRQFSGFVSDSEVGEEAAALEASLAGSIWSAAIEKSRPDDPTSTYTVAQY 201

Query: 206 NSPFEFYNRVNEIWLLFDLEE 226
           NSPFE+  RVNEIW++FD+E+
Sbjct: 202 NSPFEYEERVNEIWMMFDMED 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723865|ref|NP_001236014.1| uncharacterized protein LOC100305993 precursor [Glycine max] gi|255627213|gb|ACU13951.1| unknown [Glycine max]

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 140/204 (68%), Positives = 168/204 (82%), Gaps = 1/204 (0%)

Query: 23  GLWPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATR 82
           G+  ++ + +   PPTC RIECPS++ +HVGNG+EIR YNS +W+S SPIQDISLV+ATR
Sbjct: 25  GVRSDTLQNVGAIPPTCKRIECPSYDVIHVGNGYEIRRYNSPVWISNSPIQDISLVEATR 84

Query: 83  TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAK 142
           TGF +LFDYIQGKN Y+Q IEMTAPVI+EVLPSDGPFCESSF VSF VPK NQANPPPAK
Sbjct: 85  TGFRRLFDYIQGKNNYKQKIEMTAPVISEVLPSDGPFCESSFVVSFDVPKENQANPPPAK 144

Query: 143 GLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEK-RRAEDPTSSYI 201
           GL +Q+WK  + AVRQF GFV DS++GEEAAAL+AS+AGT WA A+EK ++     S Y 
Sbjct: 145 GLQVQRWKTVFVAVRQFGGFVKDSSVGEEAAALKASIAGTKWADAVEKSQKRAGHASVYT 204

Query: 202 VAQYNSPFEFYNRVNEIWLLFDLE 225
           VAQYN+PFE+ NRVNEIW LFD+E
Sbjct: 205 VAQYNAPFEYVNRVNEIWFLFDIE 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498208|ref|XP_003517945.1| PREDICTED: heme-binding protein 2-like [Glycine max] gi|255640875|gb|ACU20720.1| unknown [Glycine max]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 140/192 (72%), Positives = 163/192 (84%), Gaps = 1/192 (0%)

Query: 35  FPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQG 94
            PPTC RIECPS++ +H GNG+EIR YNS +W+S SPI DISLV+ATRTGF +LFDYIQG
Sbjct: 37  IPPTCKRIECPSYDVIHFGNGYEIRRYNSPVWISNSPILDISLVEATRTGFRRLFDYIQG 96

Query: 95  KNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYA 154
           KN Y+Q IEMTAPVI+EVLPSDGPFCESSF VSFYVPK NQANPPPAKGLH+Q+WK  +A
Sbjct: 97  KNNYKQKIEMTAPVISEVLPSDGPFCESSFVVSFYVPKENQANPPPAKGLHVQRWKTVFA 156

Query: 155 AVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEK-RRAEDPTSSYIVAQYNSPFEFYN 213
           AVRQF GFV DS++GEEAAAL+AS+AGT WA A+EK ++     S Y VAQYN+PFE+ N
Sbjct: 157 AVRQFGGFVKDSSVGEEAAALKASIAGTKWADAVEKSQKRAGHASVYTVAQYNAPFEYDN 216

Query: 214 RVNEIWLLFDLE 225
           RVNEIW LFD+E
Sbjct: 217 RVNEIWFLFDIE 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832981|emb|CAN68405.1| hypothetical protein VITISV_035042 [Vitis vinifera]

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 148/201 (73%), Positives = 173/201 (86%)

Query: 26  PESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGF 85
           P S K    FPPTC+RIECP+++ +  GNG+EIR YNS++W+STSPIQDISLV ATR  F
Sbjct: 22  PNSQKSTGSFPPTCSRIECPTYDLIQAGNGYEIRRYNSTVWISTSPIQDISLVDATRDAF 81

Query: 86  LQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLH 145
           LQLFDYIQGKNEY++ IEMTAPVIT+V PSDGP CESSF VSFYVPK NQANPPPAKGLH
Sbjct: 82  LQLFDYIQGKNEYQEHIEMTAPVITQVSPSDGPLCESSFVVSFYVPKKNQANPPPAKGLH 141

Query: 146 IQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQY 205
           +Q+W   YAAVRQFSGFVSDS +GEEAAAL+ASLAG+ W+AAIEK R +DPTS+Y VAQY
Sbjct: 142 VQKWGPAYAAVRQFSGFVSDSEVGEEAAALEASLAGSIWSAAIEKSRPDDPTSTYTVAQY 201

Query: 206 NSPFEFYNRVNEIWLLFDLEE 226
           NSPFE+  RVNEIW++FD+E+
Sbjct: 202 NSPFEYNERVNEIWMMFDMED 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438953|ref|XP_004137252.1| PREDICTED: heme-binding protein 2-like [Cucumis sativus]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/222 (63%), Positives = 167/222 (75%), Gaps = 7/222 (3%)

Query: 5   LSMLKFSVLLGLLSNLNLGLWPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSS 64
           + M K  V++ L+  +   L P  S+    FPPTC RIECPS++ +  G+GFEIR YNS 
Sbjct: 1   MEMAKLWVVVSLVMMI---LTPAYSE----FPPTCKRIECPSYDVIGTGDGFEIRRYNSP 53

Query: 65  MWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSF 124
           +W ST+PI DISL +ATR GFLQLFDYIQGKN + + IEMT PVITE+ PSDGPFCESSF
Sbjct: 54  VWASTAPIPDISLREATRAGFLQLFDYIQGKNSFNEKIEMTGPVITEISPSDGPFCESSF 113

Query: 125 TVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNW 184
            VSFYVPK+NQA+PPPAKGLHIQ+W +TY AVRQF GFV+D+NIG EA+AL  S+  T W
Sbjct: 114 VVSFYVPKINQADPPPAKGLHIQRWNSTYVAVRQFGGFVTDANIGSEASALDESVFDTKW 173

Query: 185 AAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEE 226
            AAI K R     S Y VAQYNSPFEF  RVNEIW LFD+E+
Sbjct: 174 GAAISKSRGAAGPSIYTVAQYNSPFEFEGRVNEIWFLFDIED 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281589|dbj|BAJ33660.1| unnamed protein product [Thellungiella halophila]

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 142/201 (70%), Positives = 159/201 (79%), Gaps = 4/201 (1%)

Query: 26  PESSKGL-KIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTG 84
           P S  GL   FPP+CNRIECPS+E +H GNG+EIR Y  ++W+ST PIQDISLV ATRT 
Sbjct: 29  PISRPGLVGKFPPSCNRIECPSYEVIHAGNGYEIRRYEKTVWISTEPIQDISLVDATRTA 88

Query: 85  FLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGL 144
           F QLF YIQGKNEY Q IEMTAPVI++V PSDGPFCESSFTVSFYVPK NQ +P PAK L
Sbjct: 89  FFQLFAYIQGKNEYHQKIEMTAPVISQVSPSDGPFCESSFTVSFYVPKKNQPDPAPAKNL 148

Query: 145 HIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAE---DPTSSYI 201
           HIQ+W +TY AVRQFSGFVSDS +GEEAAAL ASL GT WA AI+K + +      S+Y 
Sbjct: 149 HIQKWNSTYVAVRQFSGFVSDSTVGEEAAALSASLKGTAWANAIKKSKEDGGVGSDSAYT 208

Query: 202 VAQYNSPFEFYNRVNEIWLLF 222
           VAQYNSPFEF  RVNEIWL F
Sbjct: 209 VAQYNSPFEFSGRVNEIWLPF 229

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556908|ref|XP_003546762.1| PREDICTED: heme-binding protein 2-like [Glycine max]

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 157/197 (79%), Gaps = 2/197 (1%)

Query: 31  GLKIFPPTCNRIECPSFETVHVGNGFEIRHYN--SSMWMSTSPIQDISLVQATRTGFLQL 88
           G +  PPTC RIECP+ + + VG+G+EIR YN  S++WMSTSPIQDISLV+ATRTGF  L
Sbjct: 37  GRRTIPPTCKRIECPTHDVIEVGDGYEIRRYNNNSTVWMSTSPIQDISLVEATRTGFRSL 96

Query: 89  FDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQ 148
           FDYIQGKN Y+Q IEMTAPVITEV PSDGPFC+SSF VSF+VPK+NQANPPPAKGLH+Q+
Sbjct: 97  FDYIQGKNNYKQKIEMTAPVITEVSPSDGPFCKSSFVVSFFVPKLNQANPPPAKGLHVQR 156

Query: 149 WKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSP 208
           W   Y A RQF G V+DSN+  EAA L+AS+ GT W+ AI+K +     S Y VAQYN P
Sbjct: 157 WNNMYVAARQFGGHVNDSNVAVEAAVLRASIEGTKWSGAIDKNQKAGHASVYTVAQYNDP 216

Query: 209 FEFYNRVNEIWLLFDLE 225
           FE+ NRVNEIW LF++E
Sbjct: 217 FEYQNRVNEIWFLFEME 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2020307	232	HBP1 "AT1G17100" [Arabidopsis	0.869	0.862	0.669	2.3e-71
TAIR|locus:2032065	225	AT1G78450 "AT1G78450" [Arabido	0.808	0.826	0.515	1.3e-50
TAIR|locus:2032055	219	AT1G78460 [Arabidopsis thalian	0.826	0.867	0.452	4.2e-40
ZFIN|ZDB-GENE-040426-914	190	hebp2 "heme binding protein 2"	0.708	0.857	0.405	1.4e-25
UNIPROTKB|E1BFP1	205	HEBP2 "Uncharacterized protein	0.739	0.829	0.370	3.6e-25
UNIPROTKB|F1S6A9	205	HEBP2 "Uncharacterized protein	0.739	0.829	0.381	4.6e-25
UNIPROTKB|Q9Y5Z4	205	HEBP2 "Heme-binding protein 2"	0.678	0.760	0.404	1.6e-24
RGD|1311553	203	Hebp2 "heme binding protein 2"	0.739	0.837	0.365	6.1e-23
MGI|MGI:1860084	205	Hebp2 "heme binding protein 2"	0.739	0.829	0.360	1.3e-22
UNIPROTKB|E2QYU6	200	HEBP2 "Uncharacterized protein	0.678	0.78	0.380	3.4e-22

TAIR|locus:2020307 HBP1 "AT1G17100" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 138/206 (66%), Positives = 164/206 (79%)

Query:    26 PESSKGL-KI--FPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATR 82
             P++  G+ +I  FPP+CNRIECPS+E VH GNG+EIR YN+++W+ST PI DISLV ATR
Sbjct:    26 PDAESGVAQIGKFPPSCNRIECPSYELVHSGNGYEIRRYNNTVWVSTEPIPDISLVDATR 85

Query:    83 TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAK 142
             T F QLF YIQGKNEY Q IEMTAPVI++V PSDGPFCESSFTVSFYVPK NQ +P P++
Sbjct:    86 TAFFQLFAYIQGKNEYHQKIEMTAPVISQVSPSDGPFCESSFTVSFYVPKKNQPDPAPSE 145

Query:   143 GLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPT---SS 199
              LHIQ+W + Y AVRQFSGFVSD +IGE+AAAL +SL GT WA AI K + +      S+
Sbjct:   146 NLHIQKWNSRYVAVRQFSGFVSDDSIGEQAAALDSSLKGTAWANAIAKSKEDGGVGSDSA 205

Query:   200 YIVAQYNSPFEFYNRVNEIWLLFDLE 225
             Y VAQYNSPFEF  RVNEIWL F+L+
Sbjct:   206 YTVAQYNSPFEFSGRVNEIWLPFELD 231

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2032065 AT1G78450 "AT1G78450" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 100/194 (51%), Positives = 133/194 (68%)

Query:    36 PPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGK 95
             PP CNR ECPS+E VH GNG+EI  YN+++W+ST PIQDISL +A+  G+ QL DY+ G 
Sbjct:    28 PPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGN 87

Query:    96 NEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAA 155
             N+Y Q IE+  P IT+V  +      S+F VSF+VPK  Q +PPP   LH+Q+W + Y A
Sbjct:    88 NDYHQRIEIALPYITQVSQN-----LSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVA 142

Query:   156 VRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSS---YIVAQYNSPFEFY 212
             V+Q SG+V+D  IG++ A L+ASL GT WA AIEK R      S   Y VAQ++ PF++ 
Sbjct:   143 VKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWS 202

Query:   213 NRVNEIWLLFDLEE 226
              RVNEIW  F++E+
Sbjct:   203 QRVNEIWFPFEMED 216

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2032055 AT1G78460 [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 91/201 (45%), Positives = 125/201 (62%)

Query:    25 WPESSKGLKIFPPTCNRIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTG 84
             W   S G +  P TC+  ECP+++ V  G GFEIR Y++++W+STSPI  +S+ QAT+TG
Sbjct:    29 W-NPSNGFR--PGTCDHYECPTYKLVEAGYGFEIRMYDAALWISTSPIPSLSMTQATKTG 85

Query:    85 FLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPAKGL 144
             F +L  YI+G N+    + MTAPVI +  P       S +TVS Y+PK NQ NPP A  L
Sbjct:    86 FRRLNRYIEGDNKSNVKMNMTAPVIAQATPG-----RSVYTVSLYLPKKNQQNPPQADDL 140

Query:   145 HIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQ 204
             H++  K TY AVRQ  G+VS++   +EAAAL  SL  +NW   IEK + + P  +Y +A 
Sbjct:   141 HVRSTKPTYVAVRQIGGYVSNNVAKDEAAALMESLRDSNWILPIEKSKGKLP--AYFLAV 198

Query:   205 YNSPFEFYNRV-NEIWLLFDL 224
             YN P     RV NEI + F++
Sbjct:   199 YNPPSHTTARVINEIMVPFNM 219

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-914 hebp2 "heme binding protein 2" [Danio rerio (taxid:7955)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 71/175 (40%), Positives = 97/175 (55%)

Query:    53 GNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV 112
             G+ +E+R Y ++ W+ST  +  +   QA  TGF +LF YIQG NE +  +EMT PV   +
Sbjct:    26 GDDYEVRTYQATNWVSTV-VTGMEQDQAMSTGFRRLFKYIQGSNEKKSKVEMTTPVSCLI 84

Query:   113 LPSDGPFCESSFTVSFYVPKVNQANPP-PAK-GLHIQQWKATYAAVRQFSGFVSDSNIGE 170
              P  GP CES+FTVSFY+P+ +QA+PP P    + I+  K   A VR F GF +  +  E
Sbjct:    85 DPGAGPACESTFTVSFYIPEEHQADPPKPTDPDVFIESRKELTAFVRTFGGFANSESCCE 144

Query:   171 EAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLE 225
             E   L  SL           +  E P   Y  A Y+SPF+   R NE+WL+ D E
Sbjct:   145 EILKLIESLKRDGM------KFKEAP---YYRAGYDSPFKLTGRRNEVWLIKDEE 190

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BFP1 HEBP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 69/186 (37%), Positives = 100/186 (53%)

Query:    42 IECPSFETVH-VG---NGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNE 97
             +E P +E     G     +E+RHY  + W+ST+ ++ +    A +TGF +L  Y+QGKNE
Sbjct:    20 VETPGWEVPEDAGPQPGSYEVRHYGPAKWVSTA-VESMDWDSAMQTGFTRLKSYLQGKNE 78

Query:    98 YEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP-PAKG-LHIQQWKATYAA 155
              E  I+MTAPV + V P  GPF ES+ T+S Y+P   Q++PP PA+  + I+        
Sbjct:    79 KEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQSDPPRPAESDVFIEDRAEMTVF 138

Query:   156 VRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRV 215
             VR F GF S     E+   L + L         E+ +  D    Y  A YNSPF+  +R 
Sbjct:   139 VRSFDGFSSAQKNQEQLLTLASILR--------EEGKVFDE-KVYYTAGYNSPFKLLDRN 189

Query:   216 NEIWLL 221
             NE+WL+
Sbjct:   190 NEVWLI 195

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1S6A9 HEBP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 71/186 (38%), Positives = 98/186 (52%)

Query:    42 IECPSFETVH-VG---NGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNE 97
             +E P +E     G     +EIRHY  + W+STS ++      A +TGF +L  YIQGKNE
Sbjct:    20 VETPGWEAPEDTGPQPGSYEIRHYGPAKWVSTS-VESTDWDSAIQTGFTRLNSYIQGKNE 78

Query:    98 YEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP-PAKG-LHIQQWKATYAA 155
              E  I+MTAPV + V P  GPF ES+ T+S Y+P   Q++PP P +  + I+        
Sbjct:    79 KEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQSDPPRPTESNVFIEDRAEMTVF 138

Query:   156 VRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRV 215
             VR F GF S     E+   L + L         E+ +  D    Y  A Y+SPFE  +R 
Sbjct:   139 VRSFDGFSSAQKNQEQLLTLASVLR--------EEGKVFDE-KVYYTAGYSSPFELLDRN 189

Query:   216 NEIWLL 221
             NE+WL+
Sbjct:   190 NEVWLI 195

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9Y5Z4 HEBP2 "Heme-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 68/168 (40%), Positives = 91/168 (54%)

Query:    56 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
             +EIRHY  + W+STS ++ +    A +TGF +L  YIQGKNE E  I+MTAPV + V P 
Sbjct:    38 YEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG 96

Query:   116 DGPFCESSFTVSFYVPKVNQANPP-PAKG-LHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
              GPF ES+ T+S Y+P   Q +PP P +  + I+        VR F GF S     E+  
Sbjct:    97 SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLL 156

Query:   174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
              L AS+   +     EK         Y  A YNSP +  NR NE+WL+
Sbjct:   157 TL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 195

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1311553 Hebp2 "heme binding protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 68/186 (36%), Positives = 99/186 (53%)

Query:    42 IECPSF---ETVHVGNG-FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNE 97
             +E PS+   E +    G +EIRHY  + W+ST  ++ +    A +TGF +L  YIQGKNE
Sbjct:    18 MEMPSWKAPENIDPQPGSYEIRHYGPAKWVSTC-VESLDWDSAIQTGFTKLNGYIQGKNE 76

Query:    98 YEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP-PAKG-LHIQQWKATYAA 155
              E  I++TAPV++ V P  GPF ES+ T+S Y+P   Q +PP P++  + I+        
Sbjct:    77 KEMKIKLTAPVMSFVEPGSGPFSESTITISLYIPSEQQHDPPRPSESDVFIEDRGEMTVF 136

Query:   156 VRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRV 215
             VR F GF S     E+   L A++         EK         +  A Y+SPF   +R 
Sbjct:   137 VRSFDGFSSGQKNQEQLLTL-ANILREEGKVFNEK--------VFYTAGYSSPFRLLDRN 187

Query:   216 NEIWLL 221
             NE+WL+
Sbjct:   188 NEVWLI 193

GO:0005737 "cytoplasm" evidence=IEA;ISO

MGI|MGI:1860084 Hebp2 "heme binding protein 2" [Mus musculus (taxid:10090)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 67/186 (36%), Positives = 98/186 (52%)

Query:    42 IECPSF---ETVHVGNG-FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNE 97
             +E PS+   E +    G +EIRHY  + W+ST  ++ +    A +TGF +L  YIQGKNE
Sbjct:    20 LEMPSWKAPEDIDPQPGSYEIRHYGPAKWVSTC-VESLDWDSAIQTGFTKLNGYIQGKNE 78

Query:    98 YEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP-PAKG-LHIQQWKATYAA 155
              E  I++TAPV + V P   PF ES+ T+S Y+P   Q +PP P++  + I+        
Sbjct:    79 KEMKIKLTAPVTSYVEPGSSPFSESTITISLYIPSEQQPDPPRPSESDVFIEDRAEMTVF 138

Query:   156 VRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRV 215
             VR F GF S     E+   L A++         EK         +  A Y+SPF+  +R 
Sbjct:   139 VRSFDGFSSGQKNQEQLLTL-ANILREEGKVFNEK--------VFYTAGYSSPFQLLDRN 189

Query:   216 NEIWLL 221
             NE+WL+
Sbjct:   190 NEVWLI 195

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2QYU6 HEBP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 64/168 (38%), Positives = 89/168 (52%)

Query:    56 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
             +EIR Y  + W+STS ++ +    A +TG+ +L  Y++GKNE E  I+MTAPV + V P 
Sbjct:    33 YEIRRYGPAKWVSTS-VESLDWDAAIQTGYSKLDSYMRGKNEREMKIKMTAPVTSLVEPG 91

Query:   116 DGPFCESSFTVSFYVPKVNQANPP-PAK-GLHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
              GPF ES  T+S Y+P   Q +PP P++ G+ I+        VR F GF S     E+  
Sbjct:    92 SGPFSESIITISLYIPSEQQPDPPRPSESGVFIEDRAEMTVFVRAFDGFSSAQKNQEQLL 151

Query:   174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
              L AS+         EK         Y  A YNSPF   +  NE+WL+
Sbjct:   152 TL-ASILREEGKVFNEK--------VYYTAGYNSPFNLLDGNNEVWLI 190

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00012765 SubName- Full=Putative uncharacterized protein; (226 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	2e-63

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score =  195 bits (497), Expect = 2e-63
 Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 16/185 (8%)

Query: 41  RIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQ 100
            +E P +  +     +EIR Y   +W  T      S  +A+  GF +L  YI GKN   +
Sbjct: 1   AVETPPYTVLEREGDYEIRRYEPMVWAETEVDAG-SRDEASGEGFRRLAGYIFGKNRSGE 59

Query: 101 TIEMTAPVITEVLPSDGPFCESS-FTVSFYVPKVNQANPPPA---KGLHIQQWKATYAAV 156
            I MTAPV+ + +P       S  +TVSF +P   QA   PA     + I++  A   AV
Sbjct: 60  KIAMTAPVLQQAIPMTADEEGSGAWTVSFVMPSGYQAETLPAPLDPDVRIREVPARTVAV 119

Query: 157 RQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPF-EFYNRV 215
            +FSG  S+ ++ E+AA L+A L                P     +A YN P+   + R 
Sbjct: 120 IRFSGRASEEDVAEKAAELRAWLEADGLK----------PRGEPFLAGYNPPWTPPFLRR 169

Query: 216 NEIWL 220
           NE+W+
Sbjct: 170 NEVWV 174

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	100.0
PRK10016	156	DNA gyrase inhibitor; Provisional	97.39
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	97.33
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	93.83
smart00871	158	AraC_E_bind Bacterial transcription activator, eff	90.81
PRK10016	156	DNA gyrase inhibitor; Provisional	90.62
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	89.75
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	88.43

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=100.00  E-value=1.4e-53  Score=355.16  Aligned_cols=172  Identities=40%  Similarity=0.748  Sum_probs=137.2

Q ss_pred             CCCCCCeEEEeecCCeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEEcCCCCCcc
Q 026987           41 RIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFC  120 (230)
Q Consensus        41 ~~e~P~Y~vl~~~~~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~~~~~  120 (230)
                      +.|||+|+||++.++||||+|++++||||+ +.+++++.|..+||++|++||+|+|+++.+|+||+||++++.+++...|
T Consensus         1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~-~~~~~~~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~   79 (176)
T PF04832_consen    1 DIECPPYEVLKKGDDYEIRRYPPAKWASTT-VSGCSFEEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESC   79 (176)
T ss_dssp             --BS-SEEEECCCSSCEEEEE--CEEEEEE-EECS-HHHHHHHHHHHHHHHHCT-CTT------BS-EEEEEEETTTTTC
T ss_pred             CCcCCCeEEEEeCCCEEEEEECCceEEEEE-ecCCChhHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEEcCCCccc
Confidence            479999999999999999999999999998 7778999999999999999999999999999999999999976655578


Q ss_pred             cceEEEEEEeeCCCC-CCCCCC--CCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCC
Q 026987          121 ESSFTVSFYVPKVNQ-ANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPT  197 (230)
Q Consensus       121 ~~~~tmsF~lP~~~~-~~PP~p--~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~  197 (230)
                      ++.++|||+||++|+ .+||.|  ++|+|+++|++++||++|+|++++.++.+++++|+++|+++|+.          +.
T Consensus        80 ~~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~----------~~  149 (176)
T PF04832_consen   80 EKEYTMSFFLPSEYQAENPPKPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDGLK----------DK  149 (176)
T ss_dssp             ECEEEEEEE--HHHC-TS---BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTTHH----------CC
T ss_pred             CCcEEEEEEcCcccccccCCCCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCC----------cC
Confidence            899999999999999 777765  68999999999999999999999999999999999999999974          46


Q ss_pred             CceEEEEeCCCCCC-CCceeeEEEEEe
Q 026987          198 SSYIVAQYNSPFEF-YNRVNEIWLLFD  223 (230)
Q Consensus       198 ~~~~~A~Yd~P~~~-~~RrNEV~i~~~  223 (230)
                      +.+++|+||+||++ ++|||||||+++
T Consensus       150 ~~~~~a~Yd~P~~~~~~R~NEV~i~v~  176 (176)
T PF04832_consen  150 GYYYVAGYDPPFTPPFNRRNEVWIPVK  176 (176)
T ss_dssp             CEEEEEESSSS-SSSSSSCEEEEEE--
T ss_pred             CCeEEEEcCCCCCCccCcceEEEEecC
Confidence            79999999999765 899999999985

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=97.39  E-value=0.029  Score=45.22  Aligned_cols=149  Identities=14%  Similarity=0.117  Sum_probs=93.5

Q ss_pred             CeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEE--cCCCCCcccceEEEEEEeeC
Q 026987           55 GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV--LPSDGPFCESSFTVSFYVPK  132 (230)
Q Consensus        55 ~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~--~~~~~~~~~~~~tmsF~lP~  132 (230)
                      +++|+..++...++.. .. +++.+...++|.+|+.++..+|-.     .+. .+.-.  .|...+..+-.+-++.-+|.
T Consensus         2 ~v~i~~~~~~~va~ir-~~-g~~~~~~~~~~~~L~~~~~~~~l~-----~~~-~~~i~~D~p~~~~~~~~R~d~~i~v~~   73 (156)
T PRK10016          2 NYEIKQEQKRTIAGFH-LV-GPWEQTVKQGFEQLMMWVDSHNIV-----PKE-WVAVYYDNPDEVPAEKLRCDTVVTVPD   73 (156)
T ss_pred             ceEEEEccCceEEEEE-ee-cCchhHHHHHHHHHHHHHHHcCCC-----CCc-EEEEECCCCCCCChHHceeeEEEEeCC
Confidence            4788999999888875 33 344445678999999999766532     122 23222  12111111114788999997


Q ss_pred             CCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHH-HHHHHhcCCchhhhhhhccCCCCCceEEEEeC-CCCC
Q 026987          133 VNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAA-LQASLAGTNWAAAIEKRRAEDPTSSYIVAQYN-SPFE  210 (230)
Q Consensus       133 ~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~-L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd-~P~~  210 (230)
                      +... ++...++.+..+|+..+||..+.|.  -+.+.+.... +.+||..+|++.         .. .+.+-.|. .|..
T Consensus        74 ~~~~-~~~~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~~---------~~-~p~~E~Y~~~~~~  140 (156)
T PRK10016         74 DFVL-PENSEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQM---------AP-KPCFEVYLNDGAE  140 (156)
T ss_pred             Cccc-CCCCCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCcc---------CC-CCCEEEeCCCCCC
Confidence            6422 1122468889999999999999995  4456776666 778999988753         11 22233444 3433


Q ss_pred             CCCceeeEEEEEec
Q 026987          211 FYNRVNEIWLLFDL  224 (230)
Q Consensus       211 ~~~RrNEV~i~~~~  224 (230)
                      ...-.-||||+++.
T Consensus       141 ~~~~~tei~iPI~~  154 (156)
T PRK10016        141 DGYWDIEMYVPVQK  154 (156)
T ss_pred             CCcEEEEEEEEeEE
Confidence            32324699999983

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=97.33  E-value=0.019  Score=44.29  Aligned_cols=148  Identities=15%  Similarity=0.103  Sum_probs=96.3

Q ss_pred             CeEEEEeCCeeEEEeccccCccHhHH--HHHHHHHHHhhhcCCCCcCccccCCccEEEEEc--CCCCCcccceEEEEEEe
Q 026987           55 GFEIRHYNSSMWMSTSPIQDISLVQA--TRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVL--PSDGPFCESSFTVSFYV  130 (230)
Q Consensus        55 ~yEiR~Y~~~~wasT~~~~~~~~~~a--~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~--~~~~~~~~~~~tmsF~l  130 (230)
                      +++|+.-++...+... . ..++...  ....+++|..++.-.+...    ...+.+.-..  +...+...-.+.+++.+
T Consensus         2 ~~~i~~~p~~~v~~~~-~-~~~~~~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   75 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIR-R-KGPYEEEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNITDDEEFRYDIGVEV   75 (155)
T ss_dssp             CEEEEEEEEEEEEEEE-E-EEEHHHHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTSSTGCEEEEEEEEEE
T ss_pred             CcEEEEECCEEEEEEE-E-EECCchhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEeccccccCCcceEEEEEEEE
Confidence            4788888888888875 2 2344444  5688899988886322111    3445443332  22222223355556665


Q ss_pred             eCCCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHH-HHhcCCchhhhhhhccCCCCCceEEEEeCCCC
Q 026987          131 PKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQA-SLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPF  209 (230)
Q Consensus       131 P~~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~-~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~  209 (230)
                      +...    +.++++....+|+..+++..|.|..  +.+.+....|.. +|.++|+..         ..+..+-...+.|.
T Consensus        76 ~~~~----~~~~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~~---------~~~~~~E~y~~~~~  140 (155)
T PF06445_consen   76 DEDV----PNPDGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYER---------RDGPDFEIYLNDPD  140 (155)
T ss_dssp             CTTC----SGCTTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCEE---------ESSEEEEEEESSTT
T ss_pred             cccc----cCCceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCcc---------CCCCcEEEECCCCC
Confidence            5433    5567899999999999999999977  778889999999 999999731         12333344445555


Q ss_pred             C-CCCceeeEEEEEe
Q 026987          210 E-FYNRVNEIWLLFD  223 (230)
Q Consensus       210 ~-~~~RrNEV~i~~~  223 (230)
                      . ...-.=||||+++
T Consensus       141 ~~~~~~~~ei~iPik  155 (155)
T PF06445_consen  141 TDEEEYVTEIYIPIK  155 (155)
T ss_dssp             TTSCGEEEEEEEEEE
T ss_pred             CCCCceEEEEEEEEC
Confidence            3 2455679999985

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=93.83  E-value=1.8  Score=35.60  Aligned_cols=144  Identities=15%  Similarity=0.158  Sum_probs=89.6

Q ss_pred             CeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEE--EEcCCCCCcccceEEEEEEeeC
Q 026987           55 GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVIT--EVLPSDGPFCESSFTVSFYVPK  132 (230)
Q Consensus        55 ~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~--~~~~~~~~~~~~~~tmsF~lP~  132 (230)
                      +++|+..++...|... ..+  ...-..++|.+|..+-.-++---    -+..-+.  +-.|...+..+=.+-.|..+|.
T Consensus         2 dv~I~e~p~~~VA~~r-h~G--~~~~~~~~~~~l~~W~~~~~l~p----~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~~   74 (154)
T COG3449           2 DVEIIELPPIPVAYLR-HVG--DPATLKQTFEQLIAWRRENGLLP----EQSETLGIYQDDPDTTPAEKCRYDACVVVPE   74 (154)
T ss_pred             CceEEecCCceEEEEE-eeC--cHHHHHHHHHHHHHHHHHcCCCC----CCceEEEEecCCCCCCCHHHceeeEEEEcCC
Confidence            6899999999998875 344  34557789999999987655321    1222111  1134433433446777888883


Q ss_pred             CCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHH-HHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC
Q 026987          133 VNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEA-AALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF  211 (230)
Q Consensus       133 ~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~-~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~  211 (230)
                      ..   ++.+..|..-.+|+..+||.+|.|..  +++.+-. .-+.++|..+|..          ..+.+.+.+|=...- 
T Consensus        75 ~~---~~n~~~v~~~~i~GG~YAV~r~~~~~--d~~~~aw~~if~ewlp~Sg~~----------~~d~P~~e~y~n~~~-  138 (154)
T COG3449          75 PI---PENSEGVQLGEIPGGLYAVARFRGTA--DDLAKAWGYIFGEWLPASGYE----------PRDRPILERYLNFPA-  138 (154)
T ss_pred             cc---CCCCCceeEeeecCCceEEEEEeccH--HHHHHHHHHHHhhhccccCcc----------cCCCchHHHHhccCC-
Confidence            22   33346799999999999999999954  3455544 4455666666653          234566777744433 


Q ss_pred             CCceeeEEEE
Q 026987          212 YNRVNEIWLL  221 (230)
Q Consensus       212 ~~RrNEV~i~  221 (230)
                      ..-.-|+.+.
T Consensus       139 ~~~~~e~~vd  148 (154)
T COG3449         139 EDPEHEIEVD  148 (154)
T ss_pred             CCcceeEEEE
Confidence            2333444443

>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain

Probab=90.81  E-value=5.9  Score=30.14  Aligned_cols=130  Identities=16%  Similarity=0.086  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhhhcCCCCcCccccCCccEEEEE-cCCCCCcccceEEEEEEeeCCCCCCCCCCCCceEEEecCeEEEEEEe
Q 026987           81 TRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV-LPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQF  159 (230)
Q Consensus        81 ~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~-~~~~~~~~~~~~tmsF~lP~~~~~~PP~p~~V~I~~~p~~~vaV~~F  159 (230)
                      ..+.|.+|++++...+....... ..+..... .+...+...-.+.+++.++...    ..+..+.+..+|+..+++.+|
T Consensus        26 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~----~~~~~~~~~~~p~~~y~~~~~  100 (158)
T smart00871       26 IPELWQRLIAWAKELGLLPIGPS-GPPYGVYYDDPDDTPEGEFRYDAGVEVSDEV----ENPEGVETKEIPAGKYAVFTH  100 (158)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCC-ccEEEEECCCCCCCChhHeEEEEEEEeCCCC----CCCCCceEEEECCCcEEEEEE
Confidence            45778888888765443222111 12222211 1221111122455555555432    224568888999999999999


Q ss_pred             cCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC--CCceeeEEEEEe
Q 026987          160 SGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF--YNRVNEIWLLFD  223 (230)
Q Consensus       160 ~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~--~~RrNEV~i~~~  223 (230)
                      .|. ..+.+.+...+|..++..+++...       ...+..+--.++.|...  ....-|++|+++
T Consensus       101 ~g~-~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~E~y~~~~~~~~~~~~~~ei~ipv~  158 (158)
T smart00871      101 KGG-SYDEIQETWEAIYGEWLPNSGYEL-------RDAGPDFEIYLNDPADTDPEELVTEIYIPIK  158 (158)
T ss_pred             cCC-CHHHHHHHHHHHHHhhcccCCCcc-------CcCCceEEEEeCCCCCCChhHeEEEEEEEcC
Confidence            993 466788889999988887764210       11122222234444331  244678888873

This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=90.62  E-value=1.8  Score=34.65  Aligned_cols=68  Identities=13%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             CceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCC--CCCCCceeeEEE
Q 026987          143 GLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSP--FEFYNRVNEIWL  220 (230)
Q Consensus       143 ~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P--~~~~~RrNEV~i  220 (230)
                      +|+|..+|+..++.++..|...+ .+.+...+|.+++.++|+.          .. ..+...||.|  ....+-|-.|.|
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~----------~~-~~~~i~~D~p~~~~~~~~R~d~~i   69 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV----------PK-EWVAVYYDNPDEVPAEKLRCDTVV   69 (156)
T ss_pred             ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC----------CC-cEEEEECCCCCCCChHHceeeEEE
Confidence            58899999999999999997643 4778889999999998863          12 3677889999  433333444444


Q ss_pred             EE
Q 026987          221 LF  222 (230)
Q Consensus       221 ~~  222 (230)
                      .+
T Consensus        70 ~v   71 (156)
T PRK10016         70 TV   71 (156)
T ss_pred             Ee
Confidence            33

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=89.75  E-value=1.4  Score=36.26  Aligned_cols=69  Identities=10%  Similarity=0.015  Sum_probs=53.5

Q ss_pred             CceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC--CCceeeEEE
Q 026987          143 GLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF--YNRVNEIWL  220 (230)
Q Consensus       143 ~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~--~~RrNEV~i  220 (230)
                      +|.|.+.|+..||..+=.|  ....+.+-.++|.+|.+++|+-+         ..+...-..||.|-+-  ..=|--+.+
T Consensus         2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p---------~~S~~~gI~~ddP~~Tp~e~~R~D~cv   70 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLP---------EQSETLGIYQDDPDTTPAEKCRYDACV   70 (154)
T ss_pred             CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCC---------CCceEEEEecCCCCCCCHHHceeeEEE
Confidence            6899999999999999999  78889999999999999999742         3467777788999853  233344444


Q ss_pred             EE
Q 026987          221 LF  222 (230)
Q Consensus       221 ~~  222 (230)
                      .+
T Consensus        71 ~v   72 (154)
T COG3449          71 VV   72 (154)
T ss_pred             Ec
Confidence            44

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=88.43  E-value=2.1  Score=32.61  Aligned_cols=72  Identities=15%  Similarity=0.023  Sum_probs=53.7

Q ss_pred             CceEEEecCeEEEEEEecCcCChhh-HHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCCCCceeeEEEE
Q 026987          143 GLHIQQWKATYAAVRQFSGFVSDSN-IGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL  221 (230)
Q Consensus       143 ~V~I~~~p~~~vaV~~F~G~~~~~~-~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~RrNEV~i~  221 (230)
                      +|+|.++|+++++..+..|...+.. +.+..++|.+++...++.         .....++...||.|.........+.+-
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~   72 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLS---------TDPGPIIGIYYDNPNITDDEEFRYDIG   72 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC---------CSSSSEEEEEEECCTSSTGCEEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcc---------cCCCcceeEEeccccccCCcceEEEEE
Confidence            5889999999999999999887776 889999999999876542         134567777888886444555555544


Q ss_pred             Ee
Q 026987          222 FD  223 (230)
Q Consensus       222 ~~  223 (230)
                      +.
T Consensus        73 ~~   74 (155)
T PF06445_consen   73 VE   74 (155)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
3r8j_A	212	Crystal Structure Of Human Soul Protein (Orthorhomb		9e-25
4b0y_A	227	Determination Of X-Ray Structure Of Human Soul By M		1e-24
4ayz_A	208	X-Ray Structure Of Human Soul Length = 208		8e-20
4ayz_B	208	X-Ray Structure Of Human Soul Length = 208		7e-19
2hva_A	192	Solution Structure Of The Haem-Binding Protein P22h		3e-09
4a1m_A	195	Nmr Structure Of Protoporphyrin-Ix Bound Murine P22		3e-09
2gov_A	195	Solution Structure Of Murine P22hbp Length = 195		3e-09

>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic Form) Length = 212

Iteration: 1
 Score =  110 bits (274), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 12/168 (7%)
Query: 56  FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
           +EIRHY  + W+STS ++ +    A +TGF +L  YIQGKNE E  I+MTAPV + V P 
Sbjct: 41  YEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG 99
Query: 116 DGPFCESSFTVSFYVPKVNQANPPP--AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
            GPF ES+ T+S Y+P   Q +PP      + I+        VR F GF S     E+  
Sbjct: 100 SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLL 159
Query: 174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
            L AS+   +     EK         Y  A YNSP +  NR NE+WL+
Sbjct: 160 TL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 198

>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By Molecular Replacement Length = 227

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 12/168 (7%)
Query: 56  FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
           +EIRHY  + W+STS ++ +    A +TGF +L  YIQGKNE E  I+MTAPV + V P 
Sbjct: 60  YEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG 118
Query: 116 DGPFCESSFTVSFYVPKVNQANPPP--AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
            GPF ES+ T+S Y+P   Q +PP      + I+        VR F GF S     E+  
Sbjct: 119 SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLL 178
Query: 174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
            L AS+   +     EK         Y  A YNSP +  NR NE+WL+
Sbjct: 179 TL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 217

>pdb|4AYZ|A Chain A, X-Ray Structure Of Human Soul Length = 208

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 87/168 (51%), Gaps = 12/168 (7%)
Query: 56  FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
           +EIRHY  + W+STS ++      A +TGF +L  YIQGKNE E  I+ TAPV + V P 
Sbjct: 41  YEIRHYGPAKWVSTS-VESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPG 99
Query: 116 DGPFCESSFTVSFYVPKVNQANPPP--AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
            GPF ES+ T+S Y+P   Q +PP      + I+        VR F GF S     E+  
Sbjct: 100 SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQLL 159
Query: 174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
            L AS+   +     EK         Y  A YNSP +  NR NE+WL+
Sbjct: 160 TL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 198

>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul Length = 208

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 56  FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
           +EIRHY  + W+STS ++      A +TGF +L  YIQGKNE E  I+ TAPV + V P 
Sbjct: 41  YEIRHYGPAKWVSTS-VESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPG 99
Query: 116 DGPFCESSFTVSFYVPKVNQANPPP--AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
            GPF  S+ T+S Y+P   Q +PP      + I+        VR F GF S     E+  
Sbjct: 100 SGPFESSTITISLYIPSEQQFDPPRPLESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQLL 159
Query: 174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
            L AS+   +     EK         Y  A YNSP +  NR NE+WL+
Sbjct: 160 TL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 198

>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp Length = 192

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 68  STSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVS 127
           +T  + D  + +A R    ++  Y+ G N+    + MT PV   V P++    +    V 
Sbjct: 44  ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 103
Query: 128 FYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWA 185
           F +P   Q +PP    + + I++ +       QF G+  +++    A  L+ +L GT   
Sbjct: 104 FRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-- 161
Query: 186 AAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
                  A      Y  A Y+ P + Y R NE+WL+
Sbjct: 162 -------ATYQGDVYYCAGYDPPMKPYGRRNEVWLV 190

>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp Length = 195

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 68  STSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVS 127
           +T  + D  + +A R    ++  Y+ G N+    + MT PV   V P++    +    V 
Sbjct: 47  ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 106
Query: 128 FYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWA 185
           F +P   Q +PP    + + I++ +       QF G+  +++    A  L+ +L GT   
Sbjct: 107 FRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-- 164
Query: 186 AAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
                  A      Y  A Y+ P + Y R NE+WL+
Sbjct: 165 -------ATYQGDVYYCAGYDPPMKPYGRRNEVWLV 193

>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp Length = 195

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 68  STSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVS 127
           +T  + D  + +A R    ++  Y+ G N+    + MT PV   V P++    +    V 
Sbjct: 47  ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 106
Query: 128 FYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWA 185
           F +P   Q +PP    + + I++ +       QF G+  +++    A  L+ +L GT   
Sbjct: 107 FRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-- 164
Query: 186 AAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
                  A      Y  A Y+ P + Y R NE+WL+
Sbjct: 165 -------ATYQGDVYYCAGYDPPMKPYGRRNEVWLV 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	1e-44
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	1e-43
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	4e-43

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195

 Score =  147 bits (371), Expect = 1e-44
 Identities = 42/201 (20%), Positives = 79/201 (39%), Gaps = 16/201 (7%)

Query: 27  ESSKGLKIFPPTCNRIECPSFETVHVGN----GFEIRHYNSSMWMSTSPIQDISLVQATR 82
           +S+            +E   ++ +  G      +E R      + +   + D  + +A R
Sbjct: 3   QSTHHHHHHNSLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVE-VTDKPVDEALR 61

Query: 83  TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP--P 140
               ++  Y+ G N+    + MT PV   V P++    +    V F +P   Q +PP   
Sbjct: 62  EAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPS 121

Query: 141 AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSY 200
            + + I++ +       QF G+  +++    A  L+ +L GT                 Y
Sbjct: 122 DESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQ---------GDVY 172

Query: 201 IVAQYNSPFEFYNRVNEIWLL 221
             A Y+ P + Y R NE+WL+
Sbjct: 173 YCAGYDPPMKPYGRRNEVWLV 193

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score =  145 bits (367), Expect = 1e-43
 Identities = 67/199 (33%), Positives = 91/199 (45%), Gaps = 16/199 (8%)

Query: 34  IFPPTCNRIECPSFETVHVGN----GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLF 89
                   +E P ++           +EIRHY  + W+STS ++ +    A +TGF +L 
Sbjct: 34  AEDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLN 92

Query: 90  DYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPA--KGLHIQ 147
            YIQGKNE E  I+MTAPV + V P  GPF ES+ T+S Y+P   Q +PP      + I+
Sbjct: 93  SYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIE 152

Query: 148 QWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNS 207
                   VR F GF S     E+   L + L                    Y  A YNS
Sbjct: 153 DRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFD---------EKVYYTAGYNS 203

Query: 208 PFEFYNRVNEIWLLFDLEE 226
           P +  NR NE+WL+   E 
Sbjct: 204 PVKLLNRNNEVWLIQKNEP 222

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score =  143 bits (362), Expect = 4e-43
 Identities = 67/199 (33%), Positives = 91/199 (45%), Gaps = 16/199 (8%)

Query: 34  IFPPTCNRIECPSFETVHVG----NGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLF 89
                   +E P ++           +EIRHY  + W+STS ++ +    A +TGF +L 
Sbjct: 15  AEDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLN 73

Query: 90  DYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP--PAKGLHIQ 147
            YIQGKNE E  I+MTAPV + V P  GPF ES+ T+S Y+P   Q +PP      + I+
Sbjct: 74  SYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIE 133

Query: 148 QWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNS 207
                   VR F GF S     E+   L + L                    Y  A YNS
Sbjct: 134 DRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFD---------EKVYYTAGYNS 184

Query: 208 PFEFYNRVNEIWLLFDLEE 226
           P +  NR NE+WL+   E 
Sbjct: 185 PVKLLNRNNEVWLIQKNEP 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	100.0
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	100.0
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	100.0
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	98.52
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	98.15
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	96.62
1r8e_A	278	Multidrug-efflux transporter regulator; protein-DN	95.88
1d5y_A	292	ROB transcription factor; protein-DNA complex, DNA	94.34
3lur_A	158	Putative bacterial transcription regulation prote;	91.81
3gk6_A	170	Integron cassette protein VCH_CASS2; novel, oyster	90.1

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=100.00  E-value=8.5e-56  Score=380.84  Aligned_cols=185  Identities=36%  Similarity=0.589  Sum_probs=157.6

Q ss_pred             ccCCCCCCCCCCCCeEEEee----cCCeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccE
Q 026987           33 KIFPPTCNRIECPSFETVHV----GNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPV  108 (230)
Q Consensus        33 ~~~P~~c~~~e~P~Y~vl~~----~~~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV  108 (230)
                      +..++.|.+.|||+|+||++    .++||||+|++++||+|+ +.++++++|...||++|++||+|+|.++.+|+||+||
T Consensus        33 ~~~~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~-v~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV  111 (227)
T 4b0y_A           33 AAEDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPV  111 (227)
T ss_dssp             --------CCBCCCEECCC------CCSEEEEECCEEEEEEE-EEESCHHHHHHHHHHHHHHHHHTCBTTCCCCCCBSCE
T ss_pred             cccccccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEE-EeCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCE
Confidence            44667788999999999999    899999999999999998 7788999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCcccceEEEEEEeeCCCCCCCCCC--CCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchh
Q 026987          109 ITEVLPSDGPFCESSFTVSFYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAA  186 (230)
Q Consensus       109 ~~~~~~~~~~~~~~~~tmsF~lP~~~~~~PP~p--~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~  186 (230)
                      ++++.+++++.|++.|+|+|+||++||.+||.|  ++|+|+++|+++|||++|+|++++.++.+++++|+++|+++|+. 
T Consensus       112 ~t~~~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~~g~~-  190 (227)
T 4b0y_A          112 TSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV-  190 (227)
T ss_dssp             EEEEECCC--CCCEEEEEEEECCGGGSSSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHTCC-
T ss_pred             EEEEecCCCcccCceEEEEEEcChhhccCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHHHHHHhCCCc-
Confidence            999999888888999999999999999888777  58999999999999999999999999999999999999999864 


Q ss_pred             hhhhhccCCCCCceEEEEeCCCCCCCCceeeEEEEEecCCC
Q 026987          187 AIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEEG  227 (230)
Q Consensus       187 ~~~~~~~~~~~~~~~~A~Yd~P~~~~~RrNEV~i~~~~~~~  227 (230)
                              +..+.|++|+||+||++++|||||||.+++++.
T Consensus       191 --------~~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~e~~  223 (227)
T 4b0y_A          191 --------FDEKVYYTAGYNSPVKLLNRNNEVWLIQKNEPT  223 (227)
T ss_dssp             --------BCSSCEEEEECC---CCCSSCEEEEEEBC----
T ss_pred             --------cCCCcEEEEEeCCCCCcCCceeEEEEEECCCCC
Confidence                    456678999999999999999999999988763

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=100.00  E-value=2.1e-55  Score=375.24  Aligned_cols=181  Identities=37%  Similarity=0.614  Sum_probs=164.7

Q ss_pred             CCCCCCCCCCCeEEEee----cCCeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEE
Q 026987           36 PPTCNRIECPSFETVHV----GNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITE  111 (230)
Q Consensus        36 P~~c~~~e~P~Y~vl~~----~~~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~  111 (230)
                      .+-+.+.|||+|+||++    .++||||+|++++||+|+ +.++++++|...||++|++||+|+|.++.+|+||+||+++
T Consensus        17 ~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~-v~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~   95 (212)
T 3r8j_A           17 DAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSY   95 (212)
T ss_dssp             -----CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEE-EEESCHHHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEE
T ss_pred             hhhcCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEE-EeCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEE
Confidence            34445799999999999    899999999999999998 7788999999999999999999999999999999999999


Q ss_pred             EcCCCCCcccceEEEEEEeeCCCCCCCCCC--CCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhh
Q 026987          112 VLPSDGPFCESSFTVSFYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIE  189 (230)
Q Consensus       112 ~~~~~~~~~~~~~tmsF~lP~~~~~~PP~p--~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~  189 (230)
                      +.+++++.|++.|+|+|+||++||.+||.|  ++|+|+++|+++|||++|+|++++.++.+++++|+++|+++|+.    
T Consensus        96 ~~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~----  171 (212)
T 3r8j_A           96 VEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV----  171 (212)
T ss_dssp             EECTTSTTSCEEEEEEEECCHHHHSSCCCBSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCC----
T ss_pred             EecCCCcccCceEEEEEEcChHHccCCCCCCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCc----
Confidence            999888889999999999999999888776  68999999999999999999999999999999999999999864    


Q ss_pred             hhccCCCCCceEEEEeCCCCCCCCceeeEEEEEecCC
Q 026987          190 KRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEE  226 (230)
Q Consensus       190 ~~~~~~~~~~~~~A~Yd~P~~~~~RrNEV~i~~~~~~  226 (230)
                           +..+.|++|+||+||++++|||||||++++++
T Consensus       172 -----~~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~e~  203 (212)
T 3r8j_A          172 -----FDEKVYYTAGYNSPVKLLNRNNEVWLIQKNEP  203 (212)
T ss_dssp             -----BCSSCEEEEESSSSSCCSSSCEEEEEEBCC--
T ss_pred             -----cCCCcEEEEEeCCCCCcCCceeEEEEEeCCCC
Confidence                 45667899999999999999999999999863

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=100.00  E-value=1.5e-55  Score=372.05  Aligned_cols=177  Identities=23%  Similarity=0.442  Sum_probs=164.9

Q ss_pred             CCCCCCCCCCeEEEeecCC----eEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEE
Q 026987           37 PTCNRIECPSFETVHVGNG----FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV  112 (230)
Q Consensus        37 ~~c~~~e~P~Y~vl~~~~~----yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~  112 (230)
                      +-|.+.|||+|+||++.++    ||||+|++++||+|+ +.++++++|...||++|++||+|+|.++.+|+||+||++++
T Consensus        13 ~~~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~-~~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~   91 (195)
T 2gov_A           13 SLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVE-VTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAV   91 (195)
T ss_dssp             CCCCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEE-EESSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEE
T ss_pred             cccCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEE-ecCCChhHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEE
Confidence            4588999999999999877    999999999999998 78889999999999999999999999999999999999998


Q ss_pred             cCCCCCcccceEEEEEEeeCCCCCCCCCC--CCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhh
Q 026987          113 LPSDGPFCESSFTVSFYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEK  190 (230)
Q Consensus       113 ~~~~~~~~~~~~tmsF~lP~~~~~~PP~p--~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~  190 (230)
                      .+.+++.|.+.|+|+|+||++||.+||.|  ++|+|+++|++++||++|+|++++.++.+++++|+++|+++|+.     
T Consensus        92 ~p~~~~~~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~-----  166 (195)
T 2gov_A           92 FPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPAT-----  166 (195)
T ss_dssp             EECTTSCEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCC-----
T ss_pred             cCCCCCCcCceEEEEEEcchhcccCCCCCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHHHHHCCCc-----
Confidence            88888889999999999999999888777  68999999999999999999999999999999999999999864     


Q ss_pred             hccCCCCCceEEEEeCCCCCCCCceeeEEEEEe
Q 026987          191 RRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFD  223 (230)
Q Consensus       191 ~~~~~~~~~~~~A~Yd~P~~~~~RrNEV~i~~~  223 (230)
                          +..+.|++|+||+||++++|||||||+++
T Consensus       167 ----~~~~~~~~a~Yn~P~~~~~RrNEV~i~~~  195 (195)
T 2gov_A          167 ----YQGDVYYCAGYDPPMKPYGRRNEVWLVKA  195 (195)
T ss_dssp             ----EEEEEEEEEESSCCSSSSCCEEEEEEEEC
T ss_pred             ----ccCCcEEEEEeCCCCCcCCceeEEEEEeC
Confidence                34557899999999999999999999863

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=98.52  E-value=4.2e-06  Score=63.77  Aligned_cols=151  Identities=14%  Similarity=0.113  Sum_probs=98.5

Q ss_pred             CeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEE--cCCCCCcccceEEEEEEeeC
Q 026987           55 GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV--LPSDGPFCESSFTVSFYVPK  132 (230)
Q Consensus        55 ~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~--~~~~~~~~~~~~tmsF~lP~  132 (230)
                      +++|+..++...+.+. .. +++.+....++.+|++++...|...     . +.+.-.  .+...+...-.+.+++.+|.
T Consensus         2 ~~~i~~~~~~~v~~~~-~~-g~~~~~i~~~~~~l~~~~~~~~~~~-----~-~~~gi~~~~~~~~~~~~~~~~~~~~v~~   73 (157)
T 1jyh_A            2 NYEIKQEEKRTVAGFH-LV-GPWEQTVKKGFEQLMMWVDSKNIVP-----K-EWVAVYYDNPDETPAEKLRCDTVVTVPG   73 (157)
T ss_dssp             CCEEEEECCEEEEEEE-EE-SCHHHHHHHHHHHHHHHHHHTTCCC-----S-EEEEEECSCTTTSCGGGCEEEEEEEECT
T ss_pred             CCEEEEeCCeEEEEEE-EE-CCchhhHHHHHHHHHHHHHHcCCCC-----C-cEEEEECCCCCCCCHHHheEEEEEEecC
Confidence            4789999999888875 33 3444456789999999987654321     1 333211  12211112346778888886


Q ss_pred             CCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHH-HHHhcCCchhhhhhhccCCCCCceEEEEeC-CCCC
Q 026987          133 VNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQ-ASLAGTNWAAAIEKRRAEDPTSSYIVAQYN-SPFE  210 (230)
Q Consensus       133 ~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd-~P~~  210 (230)
                      .... ||.++++.+..+|+.++||..|.|...  .+.+...+|. ++|.++|+..          .+.+.+-.|. .|..
T Consensus        74 ~~~~-~~~~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~~----------~~~~~~E~Y~~~~~~  140 (157)
T 1jyh_A           74 YFTL-PENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYEM----------LPKPCFEVYLNNGAE  140 (157)
T ss_dssp             TCCC-CSSCTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEEE----------CSSCEEEEECSCHHH
T ss_pred             cccc-CCCCCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCcc----------CCCceEEEecCCCCC
Confidence            5432 233467889999999999999999863  4667777885 8999988752          1234566673 2223


Q ss_pred             CCCceeeEEEEEecCC
Q 026987          211 FYNRVNEIWLLFDLEE  226 (230)
Q Consensus       211 ~~~RrNEV~i~~~~~~  226 (230)
                      ....+.||||+++..+
T Consensus       141 ~~~~~tei~ipi~~~~  156 (157)
T 1jyh_A          141 DGYWDIEMYVAVQPKH  156 (157)
T ss_dssp             HSSEEEEEEEEEEEC-
T ss_pred             cccEEEEEEEEeeeCC
Confidence            3456679999998653

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=98.15  E-value=0.0001  Score=57.65  Aligned_cols=145  Identities=11%  Similarity=0.099  Sum_probs=96.5

Q ss_pred             CeEEEEeCCeeEEEeccccCccHhH---HHHHHHHHHHhhhcCCCCcCccccCCccEEEEEcCCCCCcccceEEEEEEee
Q 026987           55 GFEIRHYNSSMWMSTSPIQDISLVQ---ATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVP  131 (230)
Q Consensus        55 ~yEiR~Y~~~~wasT~~~~~~~~~~---a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~~~~~~~~~tmsF~lP  131 (230)
                      +++|+..++...|... ... ++.+   ....+|.+|++++..++-     ..+.|.+.-....+.  .+-++.+++.++
T Consensus         8 ~v~I~~~p~~~va~ir-~~~-~~~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~~--~~~~~~~~~~v~   78 (158)
T 3e0h_A            8 VCELKELAPVPALLIR-TQT-TMSELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMSA--GTFEVEFGFPVE   78 (158)
T ss_dssp             CEEEEEECCCEEEEEE-EEE-CHHHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCTT--SCEEEEEEEECC
T ss_pred             ccEEEeeCCceEEEEE-eec-CHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCCC--cceEEEEEEEeC
Confidence            5789999999988875 222 2322   234789999999876543     234443333222211  123455566555


Q ss_pred             CCCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCC-
Q 026987          132 KVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFE-  210 (230)
Q Consensus       132 ~~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~-  210 (230)
                      ...    +.+.++.+..+|+.++|+.++.|...+  +.+..++|.++|.++|+..          .+..+-..+|.|.. 
T Consensus        79 ~~~----~~~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~~----------~~~~~E~Y~~~p~~~  142 (158)
T 3e0h_A           79 GGV----EGSGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFDL----------SGEAYEIYLDNPAET  142 (158)
T ss_dssp             SCC----CCBTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCCE----------EEEEEEEECSCTTSS
T ss_pred             CCC----CCCCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCCc----------CCCEEEEEeCCCCCC
Confidence            432    335689999999999999999997653  8888899999999998742          12333334577775 


Q ss_pred             C-CCceeeEEEEEec
Q 026987          211 F-YNRVNEIWLLFDL  224 (230)
Q Consensus       211 ~-~~RrNEV~i~~~~  224 (230)
                      . ...+.||||+++.
T Consensus       143 ~~~~~~tei~ipv~~  157 (158)
T 3e0h_A          143 APDQLRTRVSLMLHE  157 (158)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             CHHHhEEEEEEEEcC
Confidence            2 4678999999975

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=96.62  E-value=0.12  Score=42.37  Aligned_cols=160  Identities=8%  Similarity=-0.051  Sum_probs=95.1

Q ss_pred             CeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhh------cCCCCcCcc-ccCC-ccEEEEE---cCCCC-Ccccc
Q 026987           55 GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYI------QGKNEYEQT-IEMT-APVITEV---LPSDG-PFCES  122 (230)
Q Consensus        55 ~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI------~G~N~~~~k-I~MT-aPV~~~~---~~~~~-~~~~~  122 (230)
                      +++|+.-++...+... ..+.........+|.+|+..+      ..++..... -+.+ .|...-.   .+... +..+-
T Consensus        24 ~v~i~~~p~~~v~~i~-~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~~~~~~~~~~~  102 (211)
T 3b49_A           24 KPERIFVPEMNFLMVD-GKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEGKFDLKDRDAW  102 (211)
T ss_dssp             SCEEEEEEEEEEEEEE-EESCTTSHHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESSSCCTTCGGGE
T ss_pred             CcEEEEECCeeEEEEE-eecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCCccccCchhhe
Confidence            5788888888888875 333222235668999999887      433221111 1111 1322111   11111 22234


Q ss_pred             eEEEEEEeeCCCCC-------------CCC-CCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhh
Q 026987          123 SFTVSFYVPKVNQA-------------NPP-PAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAI  188 (230)
Q Consensus       123 ~~tmsF~lP~~~~~-------------~PP-~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~  188 (230)
                      .|.+++-+|...+.             .|. .+.+|.+..+|+..+++.++.|...  .+.+...+|.++|.++|+... 
T Consensus       103 ~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~~~~-  179 (211)
T 3b49_A          103 LWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQFMETEGLRND-  179 (211)
T ss_dssp             EEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTCCBC-
T ss_pred             EEEEEEEcCCcccHHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHHHHHCCCccc-
Confidence            67788888865431             222 3467999999999999999999765  467778888899998887210 


Q ss_pred             hhhccCCCCCceEEEEeCCCCCC-C-CceeeEEEEEe
Q 026987          189 EKRRAEDPTSSYIVAQYNSPFEF-Y-NRVNEIWLLFD  223 (230)
Q Consensus       189 ~~~~~~~~~~~~~~A~Yd~P~~~-~-~RrNEV~i~~~  223 (230)
                           ....+..+--.+|.|... . .-+-||+++++
T Consensus       180 -----~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~  211 (211)
T 3b49_A          180 -----TGAIRKHHEIYLSDPRKANPEKMKTILRLPVS  211 (211)
T ss_dssp             -----BTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred             -----cCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence                 000133333344667643 2 33679999874

>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*

Probab=95.88  E-value=0.16  Score=43.03  Aligned_cols=150  Identities=9%  Similarity=-0.036  Sum_probs=88.5

Q ss_pred             CCeEEEEeCCeeEEEeccccCccHhHHH-HHHHHHHHhhhcCCCCcCccccCCccEEEEEcCCC-CCcccceE-EEEEEe
Q 026987           54 NGFEIRHYNSSMWMSTSPIQDISLVQAT-RTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSD-GPFCESSF-TVSFYV  130 (230)
Q Consensus        54 ~~yEiR~Y~~~~wasT~~~~~~~~~~a~-~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~-~~~~~~~~-tmsF~l  130 (230)
                      .+++|+..++...+... ....+. ... ...|.+|..++...+     +..+.|+.......+ .+.....+ .+++.+
T Consensus       122 ~~v~I~~~p~~~v~~~~-~~~~~~-~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~~~~~~~~~~~~~~v~v  194 (278)
T 1r8e_A          122 GEVFVLDEEEIRIIQTE-AEGIGP-ENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQPYTSIDEMTYRHIFTPV  194 (278)
T ss_dssp             TCCEEEEECCEEEEEEE-CTTCCT-TTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCCCSCGGGCCCSEEEEEC
T ss_pred             CceEEEEcCCeEEEEee-cCCCCh-HhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHHhhcCCCcceeEEEEEe
Confidence            46888999998877764 212222 122 467888888885432     333556544332211 11101111 244444


Q ss_pred             eCCCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCC
Q 026987          131 PKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFE  210 (230)
Q Consensus       131 P~~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~  210 (230)
                      +..... -|.+.++.+..+|+..+++..+.|..  +.+.+....|.+||.++|+..          .+..+--.++.|+.
T Consensus       195 ~~~~~~-l~~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~~----------~g~~~E~y~~~~~~  261 (278)
T 1r8e_A          195 LTNKQI-SSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLTV----------VSDVYELIIPIHYS  261 (278)
T ss_dssp             CCCSCC-SSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCCE----------EEEEEEEEEESCCC
T ss_pred             cCcccc-ccccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCcc----------CCCeEEEEeecccc
Confidence            432210 02345789999999999999999965  456777888889999998742          22333344455654


Q ss_pred             C---CCceeeEEEEEe
Q 026987          211 F---YNRVNEIWLLFD  223 (230)
Q Consensus       211 ~---~~RrNEV~i~~~  223 (230)
                      .   ..-.-||+|+++
T Consensus       262 ~~~~~~~~teI~iPv~  277 (278)
T 1r8e_A          262 PKKQEEYRVEMKIRIA  277 (278)
T ss_dssp             SSSCCCEEEEEEEEEC
T ss_pred             cCChhheEEEEEEEec
Confidence            2   234689999986

>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2

Probab=94.34  E-value=1.3  Score=37.28  Aligned_cols=76  Identities=9%  Similarity=0.010  Sum_probs=51.7

Q ss_pred             CCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHH-HHHhcCCchhhhhhhccCCCCCceEEEEeC----CCCCCC--C
Q 026987          141 AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQ-ASLAGTNWAAAIEKRRAEDPTSSYIVAQYN----SPFEFY--N  213 (230)
Q Consensus       141 p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd----~P~~~~--~  213 (230)
                      ++++....+|+.++||.++.|.  .+.+.+-...|. +||.++|+..          .+.+.+-.|.    ++....  .
T Consensus       209 ~~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~~----------~~~p~~E~Y~~~~~~~~~~~~~~  276 (292)
T 1d5y_A          209 VLTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLTR----------RKGQDIERYYPAEDAKAGDRPIN  276 (292)
T ss_dssp             CTTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCEE----------CSSCEEEEECGGGC----CCSCE
T ss_pred             CCcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCcc----------CCCCcEEEEeeccccCCCCCCCc
Confidence            4578889999999999999994  567888888886 8999888642          1223445564    333221  2


Q ss_pred             ceeeEEEEEecCCCc
Q 026987          214 RVNEIWLLFDLEEGF  228 (230)
Q Consensus       214 RrNEV~i~~~~~~~~  228 (230)
                      =.-||||+|+....+
T Consensus       277 ~~tEI~iPI~~k~~~  291 (292)
T 1d5y_A          277 LRCELLIPIRRKLAA  291 (292)
T ss_dssp             EEEEEEEEEECCCCC
T ss_pred             eEEEEEEEeehhhcc
Confidence            246999999876543

>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}

Probab=91.81  E-value=1.3  Score=34.03  Aligned_cols=73  Identities=11%  Similarity=0.077  Sum_probs=51.0

Q ss_pred             CCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHH-HHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC-CCceeeE
Q 026987          141 AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQ-ASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF-YNRVNEI  218 (230)
Q Consensus       141 p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~-~~RrNEV  218 (230)
                      |+++....+|+.++||-++.|... +.+++-.+.+. ++|-++|+..          ...+-+-.|+..-.. .+-.-||
T Consensus        84 p~~~~~~~ip~g~Yavf~~~G~~~-~~i~~~~~~i~~~wlp~sgy~~----------~~~p~fE~Y~~~~~~~~~~~~ei  152 (158)
T 3lur_A           84 IAKYDVITLASSKYMVFEAQGAVP-KAVQQKMEEVHHYIHQYQANTV----------KSAPFFELYQDGDTTSEKYITEI  152 (158)
T ss_dssp             GGGSEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHHHHCTTTB----------CSSCEEEEECSSCTTSTTCEEEE
T ss_pred             CCCcEEEEECCceEEEEEEecChH-HHHHHHHHHHHHhhcccCCCee----------CCCccEEEECCCCCCCcceEEEE
Confidence            467888999999999999999653 45666666655 5798888642          223556678764322 3456799


Q ss_pred             EEEEec
Q 026987          219 WLLFDL  224 (230)
Q Consensus       219 ~i~~~~  224 (230)
                      ||+++.
T Consensus       153 ~iPI~~  158 (158)
T 3lur_A          153 WMPVKG  158 (158)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999863

>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}

Probab=90.10  E-value=3.7  Score=32.25  Aligned_cols=67  Identities=9%  Similarity=-0.069  Sum_probs=47.6

Q ss_pred             CCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCC--chhhhhhhccCCCCCceEEEEeCCCCCCCCceeeE
Q 026987          141 AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTN--WAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEI  218 (230)
Q Consensus       141 p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g--~~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~RrNEV  218 (230)
                      |+++....+|+.++||-++.|... +.+++-.+.+..+|-..|  +..          ...+-+-.|+...     .-||
T Consensus       102 p~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~~----------~~~pdfE~Y~~~~-----~~eI  165 (170)
T 3gk6_A          102 LSESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHKR----------AYTTDFEYYKSAN-----TVEI  165 (170)
T ss_dssp             STTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCCB----------CCSEEEEECCSSS-----EEEE
T ss_pred             CCCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCccee----------cCcCCEEEECCCC-----eEEE
Confidence            578899999999999999999543 467777777777998877  531          2245666776542     6799


Q ss_pred             EEEEe
Q 026987          219 WLLFD  223 (230)
Q Consensus       219 ~i~~~  223 (230)
                      ||+|+
T Consensus       166 ~IpI~  170 (170)
T 3gk6_A          166 SIAVR  170 (170)
T ss_dssp             EEEBC
T ss_pred             EEEEC
Confidence            99985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	1e-47

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  153 bits (387), Expect = 1e-47
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 16/186 (8%)

Query: 42  IECPSFETVHVGN----GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNE 97
           +E   ++ +  G      +E R      + +   + D  + +A R    ++  Y+ G N+
Sbjct: 7   VETWPWQVLSTGGKEDVSYEERACEGGKFATVE-VTDKPVDEALREAMPKIMKYVGGTND 65

Query: 98  YEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPPA--KGLHIQQWKATYAA 155
               + MT PV   V P++    +    V F +P   Q +PP    + + I++ +     
Sbjct: 66  KGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVY 125

Query: 156 VRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRV 215
             QF G+  +++    A  L+ +L GT                 Y  A Y+ P + Y R 
Sbjct: 126 STQFGGYAKEADYVAHATQLRTTLEGTPATYQ---------GDVYYCAGYDPPMKPYGRR 176

Query: 216 NEIWLL 221
           NE+WL+
Sbjct: 177 NEVWLV 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	100.0
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	98.17
d1r8ea2	157	Multidrug-binding domain of transcription activato	96.91
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	82.95

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-54  Score=357.77  Aligned_cols=173  Identities=24%  Similarity=0.459  Sum_probs=160.3

Q ss_pred             CCCCCCCeEEEeecC----CeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEEcCC
Q 026987           40 NRIECPSFETVHVGN----GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS  115 (230)
Q Consensus        40 ~~~e~P~Y~vl~~~~----~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~  115 (230)
                      ..+|||+|+||++.+    +||||+|++++||||+ +.++++++|..+||++|++||+|+|+++++|+||+||++++.+.
T Consensus         5 ~~~E~~~y~v~~~~~~~~~~fE~R~Y~~~~wv~t~-~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~   83 (184)
T d2gova1           5 GSVETWPWQVLSTGGKEDVSYEERACEGGKFATVE-VTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPN   83 (184)
T ss_dssp             CSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEE-EESSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEEEC
T ss_pred             ccccCCCcEEEEECCccCCCEEEEecCCceEEEEE-ecCCChhhHHHhhhHHHhheeccCCCCCcccccccceEEEEecC
Confidence            478999999999865    7999999999999997 78899999999999999999999999999999999999999888


Q ss_pred             CCCcccceEEEEEEeeCCCCCCCCCC--CCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhcc
Q 026987          116 DGPFCESSFTVSFYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRA  193 (230)
Q Consensus       116 ~~~~~~~~~tmsF~lP~~~~~~PP~p--~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~  193 (230)
                      +++.|.+.|+|+|+||++|+.+||.|  ++|+|+++|+.++||++|+|++++.++.+++++|+++|+++|+.        
T Consensus        84 ~~~~~~~~~~m~F~lP~~~~~~~P~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~--------  155 (184)
T d2gova1          84 EDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPAT--------  155 (184)
T ss_dssp             TTSCEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCC--------
T ss_pred             CCCcccCcEEEEEEcchhhcccCCCCccccceeeccCcceEEEEEeCCcccHHHHHHHHHHHHHHHHHCCCc--------
Confidence            88889999999999999998888776  57999999999999999999999999999999999999999975        


Q ss_pred             CCCCCceEEEEeCCCCCCCCceeeEEEEE
Q 026987          194 EDPTSSYIVAQYNSPFEFYNRVNEIWLLF  222 (230)
Q Consensus       194 ~~~~~~~~~A~Yd~P~~~~~RrNEV~i~~  222 (230)
                       +..+.|++|+||+||++++|||||||..
T Consensus       156 -~~~~~~~~a~Yd~P~~p~~R~NEVw~vk  183 (184)
T d2gova1         156 -YQGDVYYCAGYDPPMKPYGRRNEVWLVK  183 (184)
T ss_dssp             -EEEEEEEEEESSCCSSSSCCEEEEEEEE
T ss_pred             -ccCCCEEEEEeCCCCCCCCcceeEEEEe
Confidence             3345678999999999999999999964

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=3.3e-05  Score=58.30  Aligned_cols=150  Identities=15%  Similarity=0.114  Sum_probs=99.3

Q ss_pred             CeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEE-cCCCCCcccceEEEEEEeeCC
Q 026987           55 GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV-LPSDGPFCESSFTVSFYVPKV  133 (230)
Q Consensus        55 ~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~-~~~~~~~~~~~~tmsF~lP~~  133 (230)
                      +|||+..++.+.+... .. +++.+...++|.+|..++..++     +..+.+...-. .+...+...-.+.+++.++..
T Consensus         2 ~~~I~~l~~~~V~g~r-~~-g~~~e~i~~~w~~l~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~v~v~~~   74 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFH-LV-GPWEQTVKKGFEQLMMWVDSKN-----IVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGY   74 (155)
T ss_dssp             CCEEEEECCEEEEEEE-EE-SCHHHHHHHHHHHHHHHHHHTT-----CCCSEEEEEECSCTTTSCGGGCEEEEEEEECTT
T ss_pred             CcEEEEECCEEEEEEE-EE-cCcHHHHHHHHHHHHHHHHHhC-----CCCCCceEEEecCcCcCCccceeEEEEEEcCCc
Confidence            6899999999999986 33 4566778899999999998643     33344432221 222222233468888888875


Q ss_pred             CCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHH-HHHHhcCCchhhhhhhccCCCCCceEEEEeC-CCCCC
Q 026987          134 NQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAAL-QASLAGTNWAAAIEKRRAEDPTSSYIVAQYN-SPFEF  211 (230)
Q Consensus       134 ~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd-~P~~~  211 (230)
                      .. .|..+.++.+..+|+.++|+..+.|...  .+.+...+| .+||.++|++.          .+.+.+-.|. .|...
T Consensus        75 ~~-~~~~~~~i~~~~lp~g~yA~~~~~G~~~--~~~~~~~~~~~~wl~~~gy~~----------~~~p~~E~Y~~~~~~~  141 (155)
T d1jyha_          75 FT-LPENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYEM----------LPKPCFEVYLNNGAED  141 (155)
T ss_dssp             CC-CCSSCTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEEE----------CSSCEEEEECSCHHHH
T ss_pred             cc-cCcccceEEEEEECCccEEEEEEccChH--HHHHHHHHHHhhhhhhcCCeE----------CCCccEEEEcCCCCCC
Confidence            53 2344567999999999999999999754  344555555 57999998752          1233444554 33222


Q ss_pred             CCceeeEEEEEec
Q 026987          212 YNRVNEIWLLFDL  224 (230)
Q Consensus       212 ~~RrNEV~i~~~~  224 (230)
                      ..-.=||||+|+.
T Consensus       142 ~~~~~ei~iPIk~  154 (155)
T d1jyha_         142 GYWDIEMYVAVQP  154 (155)
T ss_dssp             SSEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            2223499999985

>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Multidrug-binding domain of transcription activator BmrR
domain: Multidrug-binding domain of transcription activator BmrR
species: Bacillus subtilis [TaxId: 1423]

Probab=96.91  E-value=0.0067  Score=45.92  Aligned_cols=150  Identities=9%  Similarity=-0.034  Sum_probs=92.0

Q ss_pred             CeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEEcCCC-CCcccceEEEEEEeeCC
Q 026987           55 GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSD-GPFCESSFTVSFYVPKV  133 (230)
Q Consensus        55 ~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~-~~~~~~~~tmsF~lP~~  133 (230)
                      +.-|+.=+....+++. .+..+-.+....+|++|++|+...|.     -.+.++-....-.+ .......+.-.|.....
T Consensus         3 ev~i~~~~ei~i~~~~-~e~i~p~~~~~~~~~~L~~~~~~~~~-----~~~~~~G~~~~~~~~~~~~~~~y~~~~~~~~~   76 (157)
T d1r8ea2           3 EVFVLDEEEIRIIQTE-AEGIGPENVLNASYSKLKKFIESADG-----FTNNSYGATFSFQPYTSIDEMTYRHIFTPVLT   76 (157)
T ss_dssp             CCEEEEECCEEEEEEE-CTTCCTTTCCGGGGHHHHHHHHHHHS-----SCCCCEEEEECCCCCSCGGGCCCSEEEEECCC
T ss_pred             ceEEeccCcEEEEEEE-ecccCchHHHHHHHHHHHHHHHHcCC-----CCCCceEEEEECCCcccCcceEEEEEEEeccc
Confidence            4556666777777775 33222233456799999999986543     23445544442111 11112233333333322


Q ss_pred             CCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC--
Q 026987          134 NQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF--  211 (230)
Q Consensus       134 ~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~--  211 (230)
                      -...+..+.++.+...|+.++++..|.|...  .+.+.-++|.+++.++|+..          .+..+=-..+.|+..  
T Consensus        77 ~~~~~~~~~~~~~~~lp~G~ya~~~~~G~y~--~~~~~y~~l~~~~~~~g~~~----------~g~~~E~y~~d~~~~~~  144 (157)
T d1r8ea2          77 NKQISSITPDMEITTIPKGRYACIAYNFSPE--HYFLNLQKLIKYIADRQLTV----------VSDVYELIIPIHYSPKK  144 (157)
T ss_dssp             CSCCSSCCTTSEEEEECSEEEEEEEEECCHH--HHHHHHHHHHHHHHHTTCCE----------EEEEEEEEEESCCCSSS
T ss_pred             ccccCCccCCceEEecCCeEEEEEEEEECcc--chHHHHHHHHHHHHhcCcCc----------CCCeEEEEEcCCCCCCC
Confidence            2222234578999999999999999999764  67888889999999999752          223333445777653  


Q ss_pred             -CCceeeEEEEE
Q 026987          212 -YNRVNEIWLLF  222 (230)
Q Consensus       212 -~~RrNEV~i~~  222 (230)
                       .+-.-||.|++
T Consensus       145 ~~~~~teI~ipv  156 (157)
T d1r8ea2         145 QEEYRVEMKIRI  156 (157)
T ss_dssp             CCCEEEEEEEEE
T ss_pred             HHHeEEEEEEEe
Confidence             24467888876

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=82.95  E-value=3.9  Score=28.78  Aligned_cols=71  Identities=13%  Similarity=0.069  Sum_probs=51.3

Q ss_pred             CceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC--CCceeeEEE
Q 026987          143 GLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF--YNRVNEIWL  220 (230)
Q Consensus       143 ~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~--~~RrNEV~i  220 (230)
                      +++|+++|+.+|+..+-.|.. .+.+.+--++|.+++.++++.           ........||.|-..  ..-+-++.+
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~-~e~i~~~w~~l~~~~~~~~~~-----------~~~~~~~~~~~p~~~~~~~~~~~~~v   69 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIV-----------PKEWVAVYYDNPDETPAEKLRCDTVV   69 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCH-HHHHHHHHHHHHHHHHHTTCC-----------CSEEEEEECSCTTTSCGGGCEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEEcCc-HHHHHHHHHHHHHHHHHhCCC-----------CCCceEEEecCcCcCCccceeEEEEE
Confidence            578999999999999988864 345778888899988887752           234556667877753  234578888


Q ss_pred             EEecC
Q 026987          221 LFDLE  225 (230)
Q Consensus       221 ~~~~~  225 (230)
                      .+...
T Consensus        70 ~v~~~   74 (155)
T d1jyha_          70 TVPGY   74 (155)
T ss_dssp             EECTT
T ss_pred             EcCCc
Confidence            77543