Citrus Sinensis ID: 026992

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MGDSDDGSFSVSSLMCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKGNCINND
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccc
cccccccHHHHHHHHcHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccHHHEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccc
mgdsddgsfsvsslmcqedesclsqesgdekscdgsyycdpccfvlgngdEEFIEKLVDKetdfgskgcgfsddcstrTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRflskrsiddGKLWAIRLLSVACLSLAAKMeecqvpalsefqvddfdFENKVIQRMELLVLSTLdwkmgsitpfAFLHYFMIKLCGECRPKELVSRAVELIMTITkgncinnd
mgdsddgsfSVSSLMCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVDKETDFgskgcgfsddcstrTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELImtitkgncinnd
MgdsddgsfsvssLMCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKGNCINND
********************************CDGSYYCDPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKGNCI***
************SLMCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVDKETDFGSKGCG*****STRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKGNCIN**
***********SSLMC*****************DGSYYCDPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKGNCINND
*******SFSV********E*******************DPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKGNCI***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGDSDDGSFSVSSLMCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKGNCINND
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query229 2.2.26 [Sep-21-2011]
Q2V3B2 323 Cyclin-D5-1 OS=Arabidopsi yes no 0.886 0.628 0.409 3e-34
Q4KYM5 383 Cyclin-D4-2 OS=Oryza sati yes no 0.729 0.436 0.409 1e-31
Q6YXH8 356 Cyclin-D4-1 OS=Oryza sati no no 0.899 0.578 0.379 9e-31
P42751 339 Cyclin-D1-1 OS=Arabidopsi no no 0.633 0.427 0.459 5e-29
Q2QMW1 365 Cyclin-D5-2 OS=Oryza sati no no 0.519 0.326 0.537 6e-29
Q0J233308 Cyclin-D2-1 OS=Oryza sati no no 0.812 0.603 0.383 9e-29
Q10QA2 345 Cyclin-D5-3 OS=Oryza sati no no 0.602 0.4 0.482 2e-28
Q67V81363 Cyclin-D1-1 OS=Oryza sati no no 0.567 0.358 0.470 2e-28
Q8LGA1308 Cyclin-D4-1 OS=Arabidopsi no no 0.733 0.545 0.422 3e-28
Q0DQA9 367 Cyclin-D5-1 OS=Oryza sati no no 0.489 0.305 0.529 5e-28
>sp|Q2V3B2|CCD51_ARATH Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/232 (40%), Positives = 135/232 (58%), Gaps = 29/232 (12%)

Query: 1   MGDSDDGSFSVSSLMCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVDK 60
           MG+  D   S++  +C E ES L+++  D+++ + S   +P  F     DE+++  LV K
Sbjct: 1   MGEPKD---SLALFLCHESESSLNED--DDETIERSDKQEPH-FTTTIDDEDYVADLVLK 54

Query: 61  ET----DFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLD 116
           E        SK    SD             RL AI+WI   R  FGFQ +TAY+++ + D
Sbjct: 55  ENLRFETLPSKTTSSSD-------------RLIAIDWILTTRTRFGFQHQTAYIAISYFD 101

Query: 117 RFLSKRSI--DDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVD-DFDFENKVIQRME 173
            FL KR I     + WA+RLLSVACLSLAAKMEE  VP LS++  D DF F+  VI++ E
Sbjct: 102 LFLHKRFIGLQKDETWAMRLLSVACLSLAAKMEERIVPGLSQYPQDHDFVFKPDVIRKTE 161

Query: 174 LLVLSTLDWKMGSITPFAFLHYFMIKLCGECR--PKELV-SRAVELIMTITK 222
           LL+LSTLDWKM  ITPF + +YF+ K+  +     K+LV  R+ + ++ +TK
Sbjct: 162 LLILSTLDWKMNLITPFHYFNYFLAKISQDNHSVSKDLVLLRSSDSLLALTK 213

Arabidopsis thaliana (taxid: 3702)
>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2 Back     alignment and function description
>sp|Q6YXH8|CCD41_ORYSJ Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2 Back     alignment and function description
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3 Back     alignment and function description
>sp|Q2QMW1|CCD52_ORYSJ Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYCD5-2 PE=2 SV=1 Back     alignment and function description
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2 Back     alignment and function description
>sp|Q10QA2|CCD53_ORYSJ Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYCD5-3 PE=2 SV=1 Back     alignment and function description
>sp|Q67V81|CCD11_ORYSJ Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1 Back     alignment and function description
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2 Back     alignment and function description
>sp|Q0DQA9|CCD51_ORYSJ Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYCD5-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
224071313 337 predicted protein [Populus trichocarpa] 0.951 0.646 0.611 5e-64
359359236 337 D5-type cyclin [Populus x canadensis] 0.951 0.646 0.607 3e-63
296087323 330 unnamed protein product [Vitis vinifera] 0.917 0.636 0.538 1e-58
356495506321 PREDICTED: cyclin-D5-1-like [Glycine max 0.947 0.676 0.544 2e-58
356540631327 PREDICTED: cyclin-D5-3-like [Glycine max 0.921 0.645 0.546 6e-58
225458826317 PREDICTED: cyclin-D5-1 [Vitis vinifera] 0.838 0.605 0.552 2e-57
255538076327 cyclin d, putative [Ricinus communis] gi 0.877 0.614 0.529 8e-55
356518130314 PREDICTED: cyclin-D5-1-like [Glycine max 0.877 0.640 0.521 7e-52
449530548242 PREDICTED: cyclin-D5-1-like, partial [Cu 0.855 0.809 0.526 3e-51
449447295317 PREDICTED: cyclin-D5-1-like [Cucumis sat 0.855 0.618 0.526 5e-51
>gi|224071313|ref|XP_002303399.1| predicted protein [Populus trichocarpa] gi|159025723|emb|CAN88862.1| D5-type cyclin [Populus trichocarpa] gi|222840831|gb|EEE78378.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 137/224 (61%), Positives = 167/224 (74%), Gaps = 6/224 (2%)

Query: 1   MGDSDDGSFSVSSLMCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNG-DEEFIEKLVD 59
           MGD D+   S+SSL+C E+ESC   +S  + S   +   D   F L    D E++EKLV+
Sbjct: 1   MGDFDNSL-SLSSLLCHENESCFFNDSISDHS---NIKHDRSRFGLETEVDVEYVEKLVE 56

Query: 60  KET-DFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRF 118
           +ET  FG +     DDC   + +WLK ARLDAIEWI N RA++GF+F TAYLSV + DRF
Sbjct: 57  RETITFGYRCHASFDDCLITSHNWLKFARLDAIEWILNTRAIYGFRFHTAYLSVTYFDRF 116

Query: 119 LSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQRMELLVLS 178
           +SKRSID+GKLWAIRLLSVACLSLAAKMEE +VP LSEF V+D+ F NKVIQRMELLVL+
Sbjct: 117 VSKRSIDEGKLWAIRLLSVACLSLAAKMEERKVPPLSEFPVEDYCFGNKVIQRMELLVLN 176

Query: 179 TLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITK 222
           TL+W+M SITPFA+LHYF+ K CGE  PKE VSRAVELI+ + K
Sbjct: 177 TLEWRMNSITPFAYLHYFIHKTCGESTPKETVSRAVELIVAMIK 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359359236|gb|AEV41136.1| D5-type cyclin [Populus x canadensis] Back     alignment and taxonomy information
>gi|296087323|emb|CBI33697.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356495506|ref|XP_003516618.1| PREDICTED: cyclin-D5-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356540631|ref|XP_003538790.1| PREDICTED: cyclin-D5-3-like [Glycine max] Back     alignment and taxonomy information
>gi|225458826|ref|XP_002283315.1| PREDICTED: cyclin-D5-1 [Vitis vinifera] gi|302142205|emb|CBI19408.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255538076|ref|XP_002510103.1| cyclin d, putative [Ricinus communis] gi|223550804|gb|EEF52290.1| cyclin d, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356518130|ref|XP_003527735.1| PREDICTED: cyclin-D5-1-like [Glycine max] Back     alignment and taxonomy information
>gi|449530548|ref|XP_004172256.1| PREDICTED: cyclin-D5-1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449447295|ref|XP_004141404.1| PREDICTED: cyclin-D5-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
TAIR|locus:2120081 323 CYCD5;1 "AT4G37630" [Arabidops 0.855 0.606 0.425 1.8e-32
UNIPROTKB|Q10QA2 345 CYCD5-3 "Cyclin-D5-3" [Oryza s 0.899 0.597 0.399 7.7e-32
TAIR|locus:2020663 339 CYCD1;1 "CYCLIN D1;1" [Arabido 0.628 0.424 0.463 2.8e-27
TAIR|locus:2083128 361 CYCD3;3 "AT3G50070" [Arabidops 0.606 0.385 0.429 5.2e-26
TAIR|locus:2124331 376 CYCD3;1 "CYCLIN D3;1" [Arabido 0.764 0.465 0.383 5.2e-26
TAIR|locus:2142504298 CYCD4;2 "AT5G10440" [Arabidops 0.733 0.563 0.385 1.1e-25
TAIR|locus:2157172 367 CYCD3;2 "AT5G67260" [Arabidops 0.620 0.386 0.386 2.9e-23
TAIR|locus:2125522 302 CYCD6;1 "AT4G03270" [Arabidops 0.524 0.397 0.368 8.6e-17
TAIR|locus:2185178 341 CYCD7;1 "AT5G02110" [Arabidops 0.641 0.431 0.256 3e-13
UNIPROTKB|E2RQA2432 CCNA2 "Uncharacterized protein 0.537 0.284 0.328 4.1e-11
TAIR|locus:2120081 CYCD5;1 "AT4G37630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 91/214 (42%), Positives = 128/214 (59%)

Query:    15 MCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDD 74
             +C E ES L+++  D+++ + S   +P  F     DE+++  LV KE         F   
Sbjct:    12 LCHESESSLNED--DDETIERSDKQEPH-FTTTIDDEDYVADLVLKEN------LRFETL 62

Query:    75 CSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSI--DDGKLWAI 132
              S  T S     RL AI+WI   R  FGFQ +TAY+++ + D FL KR I     + WA+
Sbjct:    63 PSKTTSS---SDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWAM 119

Query:   133 RLLSVACLSLAAKMEECQVPALSEFQVD-DFDFENKVIQRMELLVLSTLDWKMGSITPFA 191
             RLLSVACLSLAAKMEE  VP LS++  D DF F+  VI++ ELL+LSTLDWKM  ITPF 
Sbjct:   120 RLLSVACLSLAAKMEERIVPGLSQYPQDHDFVFKPDVIRKTELLILSTLDWKMNLITPFH 179

Query:   192 FLHYFMIKLCGECRP--KELVS-RAVELIMTITK 222
             + +YF+ K+  +     K+LV  R+ + ++ +TK
Sbjct:   180 YFNYFLAKISQDNHSVSKDLVLLRSSDSLLALTK 213
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0042023 "DNA endoreduplication" evidence=RCA;IMP
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0010440 "stomatal lineage progression" evidence=RCA
GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA
UNIPROTKB|Q10QA2 CYCD5-3 "Cyclin-D5-3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2020663 CYCD1;1 "CYCLIN D1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083128 CYCD3;3 "AT3G50070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124331 CYCD3;1 "CYCLIN D3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142504 CYCD4;2 "AT5G10440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157172 CYCD3;2 "AT5G67260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125522 CYCD6;1 "AT4G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185178 CYCD7;1 "AT5G02110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQA2 CCNA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_III000666
SubName- Full=D5-type cyclin; (337 aa)
(Populus trichocarpa)
Predicted Functional Partners:
KRP-7
SubName- Full=Putative uncharacterized protein; (206 aa)
      • 0.687
RBL901
SubName- Full=Putative uncharacterized protein;; Regulator of biological processes that recruit [...] (965 aa)
    • • 0.534

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 2e-27
cd0004388 cd00043, CYCLIN, Cyclin box fold 4e-11
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 2e-10
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-08
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  101 bits (253), Expect = 2e-27
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 4/100 (4%)

Query: 87  RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
           R   I+W+      F     T YL+V++LDRFLSK+ +       ++L+ V CL +AAK 
Sbjct: 31  RAILIDWLVEVHEEFKLLPETLYLAVNYLDRFLSKQPV---PRTKLQLVGVTCLLIAAKY 87

Query: 147 EECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMG 185
           EE   P++ +F  + D  +  + I RMELL+LSTL+W + 
Sbjct: 88  EEIYPPSVEDFVYITDNAYTKEEILRMELLILSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 229
KOG0656 335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
KOG0655 408 consensus G1/S-specific cyclin E [Cell cycle contr 99.97
KOG0653391 consensus Cyclin B and related kinase-activating p 99.97
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.95
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.94
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.73
TIGR00569 305 ccl1 cyclin ccl1. University). 99.65
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.54
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.49
KOG0834 323 consensus CDK9 kinase-activating protein cyclin T 99.46
COG5333 297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.25
KOG0835 367 consensus Cyclin L [General function prediction on 98.99
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 98.91
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.71
PRK00423310 tfb transcription initiation factor IIB; Reviewed 98.61
KOG2496 325 consensus Cdk activating kinase (CAK)/RNA polymera 98.27
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 98.24
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 97.26
KOG1597308 consensus Transcription initiation factor TFIIB [T 97.08
KOG1674218 consensus Cyclin [General function prediction only 96.74
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.18
PRK00423310 tfb transcription initiation factor IIB; Reviewed 94.11
KOG1598 521 consensus Transcription initiation factor TFIIIB, 92.72
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 87.84
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 87.56
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 85.02
KOG1675343 consensus Predicted cyclin [General function predi 83.58
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-41  Score=300.50  Aligned_cols=205  Identities=34%  Similarity=0.567  Sum_probs=168.3

Q ss_pred             ccccccCCccCccC-CCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHH
Q 026992           13 SLMCQEDESCLSQE-SGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAI   91 (229)
Q Consensus        13 ~l~C~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v   91 (229)
                      .|+|+|.+...+.+ ...++.... ..+..-.|  .-+++|.+++|+++|..+.|+.++..    .....+++.+|..++
T Consensus        10 ~l~c~E~~~~~~~~~~~~D~~~~~-~~~~~~~~--~~~~e~~i~~ll~kEe~~~p~~~~~~----~~~~~~~~~~R~~A~   82 (335)
T KOG0656|consen   10 QLLCHEESTSDEQDRADNDESSTE-SSIPQLGF--LLWDERVLANLLEKEEQHNPSLDYFL----CVQKLILSSMRKQAL   82 (335)
T ss_pred             ccccCCCCcccccccccCCccccc-cccccccc--ccccHHHHHHHHHHHHHhCCCCchhh----hcccccccHHHHHHH
Confidence            58999976544321 222221111 11121112  34689999999999999999876322    233457888999999


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCccceec--ccCCCcHHHH
Q 026992           92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQV--DDFDFENKVI  169 (229)
Q Consensus        92 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~~--~~~~~t~~~i  169 (229)
                      +||++||++++++++|++|||||||||++..++++.++|++||+|+|||+||||+||+.+|.+.++++  .++.|.++.|
T Consensus        83 ~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI  162 (335)
T KOG0656|consen   83 DWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTI  162 (335)
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999983  5699999999


Q ss_pred             HHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHhhhh
Q 026992          170 QRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRP-KELVSRAVELIMTITKGN  224 (229)
Q Consensus       170 ~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~~-~~i~~~~~~~~l~~~~~~  224 (229)
                      ++||+.||++|+|+|+.+||++|+++|+++++..... ..+.+++..++++.++++
T Consensus       163 ~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~~~~~~~~~s~~ll~~~~d~  218 (335)
T KOG0656|consen  163 QRMELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHNKHLFLKHASLFLLSVITDI  218 (335)
T ss_pred             HHHHHHHHhhccccccCCCchHHHHHHHHHcCcccchHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999987555 456677788888877665

>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 3e-11
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 3e-11
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 3e-11
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 3e-11
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 4e-11
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 4e-11
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 4e-11
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 4e-11
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 4e-11
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 4e-11
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 4e-11
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 5e-11
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 5e-11
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 5e-11
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 5e-11
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 5e-11
1vin_A268 Bovine Cyclin A3 Length = 268 5e-11
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 1e-10
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 1e-10
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 1e-10
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 7e-08
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 3e-07
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 4e-07
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-04
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-04
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure 
Iteration: 1

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 91  IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
           ++W+      +  Q  T +L+V+++DRFLS  S+  GKL   +L+  A + LA+K EE  
Sbjct: 48  VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 104
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECR 205
            P ++EF  + D  +  K + RME LVL  L + + + T   FL  YF+ +    C+
Sbjct: 105 PPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK 161
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-26
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 3e-26
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 2e-22
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 3e-22
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-21
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 2e-21
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 4e-20
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 9e-19
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 2e-10
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 3e-09
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 2e-06
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 2e-06
2ivx_A257 Cyclin-T2; transcription regulation, cell division 5e-05
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 5e-04
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
 Score =  103 bits (258), Expect = 1e-26
 Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 26/211 (12%)

Query: 3   DSDDGSFSVSS-LMCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVDKE 61
           D DD S   S  L+C E      +   D +                 GD+  ++ L+  E
Sbjct: 5   DDDDKSPGGSMELLCCEGTRHAPRAGPDPRLL---------------GDQRVLQSLLRLE 49

Query: 62  TDFGSKGCGFSDDCSTRTQSWLKCA-RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLS 120
             +               Q  +K   R     W+         +     L++++LDR+LS
Sbjct: 50  ERYVP-----RASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLS 104

Query: 121 KRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEF-QVDDFDFENKVIQRMELLVLST 179
                  +L   +LL   C+ LA+K+ E     + +     D     + ++  E+LVL  
Sbjct: 105 CVPTRKAQL---QLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGK 161

Query: 180 LDWKMGSITPFAFLHYFMIKLCGECRPKELV 210
           L W + ++    FL + + +L      + LV
Sbjct: 162 LKWDLAAVIAHDFLAFILHRLSLPRDRQALV 192
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.92
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.92
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.91
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.91
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.9
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 99.86
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.73
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.51
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.02
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.58
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 98.32
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.49
1c9b_A207 General transcription factor IIB; protein-DNA comp 94.06
2ivx_A257 Cyclin-T2; transcription regulation, cell division 90.32
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 90.3
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 86.78
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 86.36
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 84.9
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.6e-37  Score=272.41  Aligned_cols=164  Identities=20%  Similarity=0.368  Sum_probs=147.4

Q ss_pred             chHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcc
Q 026992           49 GDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGK  128 (229)
Q Consensus        49 ~~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~  128 (229)
                      +++|++++|+++|.++.|+++|+...    ..++++.+|..+|+||.+|+..|+++++|+++||+|||||+++..+.+.+
T Consensus        37 ~~~~i~~~l~~~E~~~~p~~~y~~~~----q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~  112 (306)
T 3g33_B           37 GDQRVLQSLLRLEERYVPRASYFQCV----QREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQ  112 (306)
T ss_dssp             CHHHHHHHHHHHGGGGSCSSCCTTTS----TTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGG
T ss_pred             chHHHHHHHHHHHHHhCCCcHHHhhc----CccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHH
Confidence            58999999999999999998887631    23588999999999999999999999999999999999999999988776


Q ss_pred             hhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCCcH
Q 026992          129 LWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPK  207 (229)
Q Consensus       129 ~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~~~  207 (229)
                      +   ||+|+|||+||+|+||..+|.+.++. ++++.|++++|++||+.||++|+|+++.|||++|+.+|++.++......
T Consensus       113 l---qLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~  189 (306)
T 3g33_B          113 L---QLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQ  189 (306)
T ss_dssp             H---HHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTH
T ss_pred             H---HHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHH
Confidence            5   99999999999999999999999999 8999999999999999999999999999999999999999988776655


Q ss_pred             HHHHHHHHHHHH
Q 026992          208 ELVSRAVELIMT  219 (229)
Q Consensus       208 ~i~~~~~~~~l~  219 (229)
                      ..+.+.+..++.
T Consensus       190 ~~~~~~a~~~l~  201 (306)
T 3g33_B          190 ALVKKHAQTFLA  201 (306)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555554443
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 229
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 2e-21
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 7e-21
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 3e-20
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 3e-20
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 9e-20
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 2e-16
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 6e-14
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 1e-13
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (209), Expect = 2e-21
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 87  RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
           R   ++W+     ++     T YL+ DF DR+++ +         ++L+ ++ L +AAK+
Sbjct: 43  RAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENV--VKTLLQLIGISSLFIAAKL 100

Query: 147 EECQVPALSEFQVD-DFDFENKVIQRMELLVLSTLDWKM 184
           EE   P L +F    D       I  MEL+++  L W++
Sbjct: 101 EEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRL 139
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 100.0
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.97
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.96
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.78
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.78
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.79
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.66
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.26
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.6
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 96.22
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 92.9
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=221.53  Aligned_cols=130  Identities=24%  Similarity=0.456  Sum_probs=119.1

Q ss_pred             CchHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcC-ccCC
Q 026992           48 NGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKR-SIDD  126 (229)
Q Consensus        48 ~~~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~-~i~~  126 (229)
                      .+++|++++|+++|.+|.++.+|+..+     .++++++|..+|+||++++..++++++|+|+||+|||||++.. .+++
T Consensus         9 ~~~~dI~~~l~~~E~~~~~~~~~l~~q-----~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~v~~   83 (140)
T d1w98b2           9 ANREEVWKIMLNKEKTYLRDQHFLEQH-----PLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVK   83 (140)
T ss_dssp             SCHHHHHHHHHHHTTTSCCCTTGGGGC-----TTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCG
T ss_pred             cCHHHHHHHHHHHHHhhCCChHHHhCC-----CCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhccccccH
Confidence            568999999999999998887766543     4578999999999999999999999999999999999999865 4676


Q ss_pred             cchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCccc
Q 026992          127 GKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMG  185 (229)
Q Consensus       127 ~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~  185 (229)
                      ++   +||+|+|||+||+|+||..+|.+.++. ++++.|+.++|.+||+.||++|+|+|+
T Consensus        84 ~~---lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          84 TL---LQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             GG---HHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             HH---HhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            66   499999999999999999999999998 999999999999999999999999985
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure