Citrus Sinensis ID: 026994

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
ccccHcHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHccc
Coil and Loop (DISEMBL)
mgkllepvwgskefLKFIFIVNFLTSLCIFITAVALYYITRLETYLymplsgfqGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYlqkkpetklsgdpsddfafssffpefirpvidPIASIFHRMlcgrrtetsgddhgytlggaslpgsdpieaSRRRERGARALEERLATEKLAAAQSVEESKKDAAENV
Flexible Loop (DISEMBL)
mgkllepvwgsKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYtlggaslpgsdpieaSRRRERGARALEERLATeklaaaqsveeskkdaaenv
Low Complexity Region (SEG)
MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGdpsddfafssffpefIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIeasrrrergaraleerlateklaaaQSVEESKKDAAENV
Disordered region (IsUnstruct)
****LEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQK************DFAFSSFFPEFIRPVIDPIASIFHRMLCGRR**************************************************************
Disordered Region (DISOPRED)
MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQ*************DFAFSSFFPEFIRPVIDPIASIFHRMLCGRRT****************************ERGARA***************************
Disordered Region (DISEMBL)
MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATE*******************
Disordered Region (DISPRO)
*GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSG****************************R****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q12893	351	Transmembrane protein 115	yes	no	0.969	0.632	0.330	7e-22
Q9WUH1	350	Transmembrane protein 115	yes	no	0.969	0.634	0.324	7e-22
A4FUB8	351	Transmembrane protein 115	yes	no	0.969	0.632	0.334	7e-22
Q12239	342	Uncharacterized membrane	yes	no	0.903	0.605	0.261	5e-11

>sp|Q12893|TM115_HUMAN Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1

 Score =  103 bits (258), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 11/233 (4%)

Query: 2   GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGF 60
           G+LLEP+WG+ E L F  +VN    L      +  Y  +    YL+ + + G  G L G 
Sbjct: 86  GRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGV 145

Query: 61  LVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYL 119
           LV +KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+YL
Sbjct: 146 LVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYL 205

Query: 120 RYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCG----RRTETSGDDH 175
           R+ Q+   ++  GD +D FAF++FFPE ++PV+  +A++ H +L      ++T    D  
Sbjct: 206 RFYQR--HSRGRGDMADHFAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVG 263

Query: 176 GYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAEN 228
             +    SLPG+DP +A RRR+   +AL ERL   K    QS+  S  D  E 
Sbjct: 264 APSSITISLPGTDPQDAERRRQLALKALNERL---KRVEDQSIWPSMDDDEEE 313

Homo sapiens (taxid: 9606)

>sp|Q9WUH1|TM115_MOUSE Transmembrane protein 115 OS=Mus musculus GN=Tmem115 PE=1 SV=1

 Score =  103 bits (258), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 2   GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGF 60
           G+LLEP+WG+ E L F  +VN    L   +  +  Y  +    YL+ + + G  G L G 
Sbjct: 86  GRLLEPLWGALELLIFFSVVNVSVGLLGALAYLLTYMASFNLVYLFTIRIHGALGFLGGV 145

Query: 61  LVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYL 119
           LV +KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+YL
Sbjct: 146 LVALKQTMGDCVVLRVPQVRVSVVPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYL 205

Query: 120 RYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLC----GRRTETSGDDH 175
           R+ Q+    +  GD +D FAF++FFPE ++PV+  +A++ H +L      ++T    D  
Sbjct: 206 RFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVKVKICQKTVKRYDVG 263

Query: 176 GYTLGGASLPGSDPIEASRRRERGARALEERLA-TEKLAAAQSVEESKKDA 225
             +    SLPG+DP +A RRR+   +AL ERL   E  +A  S+++ +++A
Sbjct: 264 APSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQSAWPSMDDDEEEA 314

Mus musculus (taxid: 10090)

>sp|A4FUB8|TM115_BOVIN Transmembrane protein 115 OS=Bos taurus GN=TMEM115 PE=2 SV=1

 Score =  103 bits (258), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 120/233 (51%), Gaps = 11/233 (4%)

Query: 2   GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGF 60
           G+LLEP+WG+ E L F  +VN    L      +  Y  +    YL+ + + G  G L G 
Sbjct: 86  GRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGV 145

Query: 61  LVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYL 119
           LV +KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+YL
Sbjct: 146 LVALKQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLATLLQSPALASYGFGLISSWVYL 205

Query: 120 RYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLC----GRRTETSGDDH 175
           R+ Q+    +  GD +D FAF++FFPE ++PV+  +A++ H +L      ++T    D  
Sbjct: 206 RFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVKVKICQKTVKRYDVG 263

Query: 176 GYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAEN 228
             +    SLPG+DP +A RRR+   +AL ERL   K    QSV  S  D  E 
Sbjct: 264 APSSITISLPGTDPQDAERRRQLALKALNERL---KRVEDQSVWPSMDDDEEE 313

Bos taurus (taxid: 9913)

>sp|Q12239|YO107_YEAST Uncharacterized membrane protein YOL107W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL107W PE=1 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%)

Query: 2   GKLLEPVWGS-KEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           G  +E  W S KE  KFI ++  LT++ I +  + + + +  +  L +PL G   +L GF
Sbjct: 106 GSFIERNWNSSKEMFKFIIVLGSLTNVLIIMLTLLVSFFSN-KVRLDIPLDGNYTILIGF 164

Query: 61  LVGIKQIVPDQELYLLK--------IKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGT 112
            +  +Q++P+  +  LK         + K LP  ++              A L ++    
Sbjct: 165 PIIYRQLLPETTIIHLKTPQFLAKNFRFKLLPIFVMFTMTVTQIIWFHHFAQLFSIWVTF 224

Query: 113 YMGWIYLRYLQKK--------PETK-------LSGDPSDDFAFSSFFPEFIRPVIDPIAS 157
           +  W YLR+ QK         P T        L GD SD F    FFP+ I+P++ PI +
Sbjct: 225 FASWSYLRFFQKLAPLNCPSLPTTNSQGGQEILVGDASDTFQLIYFFPDLIKPILRPIFN 284

Query: 158 -IFHRMLCGRRTETSGDDHGYTLGG--ASLPGSDPIEA--SRRRERGARALEERLAT 209
            I++ ++   +      D    +G   A   G+  I     RRR+   + LEER+  
Sbjct: 285 FIYNVVVVKFKVIKPFHDIDIDIGNTIAESRGAKKIMTVEERRRQLALQVLEERMVN 341

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
118485684	303	unknown [Populus trichocarpa]	0.973	0.735	0.825	1e-105
225449084	311	PREDICTED: transmembrane protein 115 [Vi	0.995	0.733	0.780	1e-102
297829360	304	hypothetical protein ARALYDRAFT_896969 [	0.995	0.75	0.772	1e-101
6648207	384	unknown protein [Arabidopsis thaliana]	0.995	0.593	0.764	1e-100
18398108	304	rhomboid protein-like protein [Arabidops	0.995	0.75	0.764	1e-100
255585086	308	Transmembrane protein, putative [Ricinus	0.995	0.740	0.820	3e-98
357443327	317	Transmembrane protein [Medicago truncatu	0.995	0.719	0.733	8e-95
388513695	317	unknown [Medicago truncatula]	0.995	0.719	0.729	3e-94
224113005	275	hypothetical protein POPTRDRAFT_659857 [	0.851	0.709	0.836	2e-93
224097969	275	predicted protein [Populus trichocarpa]	0.851	0.709	0.846	3e-93

>gi|118485684|gb|ABK94692.1| unknown [Populus trichocarpa]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/229 (82%), Positives = 206/229 (89%), Gaps = 6/229 (2%)

Query: 1   MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           MGKLLEPVWGSKEFLKFIFIVNFL S+C+FITA++LYYITR E YLYMP+SGFQG+LAGF
Sbjct: 81  MGKLLEPVWGSKEFLKFIFIVNFLISICVFITAISLYYITRQENYLYMPISGFQGILAGF 140

Query: 61  LVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR 120
           LVGIKQI+PDQEL LL+IKAKW PSLMLL++IAISFFTAESAAYLPTLIFGTYM WIYLR
Sbjct: 141 LVGIKQIIPDQELSLLRIKAKWFPSLMLLIAIAISFFTAESAAYLPTLIFGTYMSWIYLR 200

Query: 121 YLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLG 180
           Y Q+KPETKL GDPSDDFAFSSFFPE +RP+IDPIASIFHRMLCG R ETS + HG TLG
Sbjct: 201 YFQRKPETKLRGDPSDDFAFSSFFPESLRPIIDPIASIFHRMLCG-RFETSTEAHGDTLG 259

Query: 181 GASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV 229
            ASLPGSDPIEA+RRRERGARALEERLAT     A S EE K+DA+ENV
Sbjct: 260 DASLPGSDPIEATRRRERGARALEERLAT-----APSAEELKRDASENV 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449084|ref|XP_002275709.1| PREDICTED: transmembrane protein 115 [Vitis vinifera] gi|296086036|emb|CBI31477.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/232 (78%), Positives = 207/232 (89%), Gaps = 4/232 (1%)

Query: 1   MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           +GKLLEP+WG++EFLKFIF+VNFLTS+C+FITA+ALYYITR E YLYMPLSGF GVL+GF
Sbjct: 81  LGKLLEPIWGTREFLKFIFVVNFLTSVCVFITAIALYYITRQENYLYMPLSGFHGVLSGF 140

Query: 61  LVGIKQIVPDQELYL---LKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWI 117
           LVGIKQI+PDQEL L   LKI+A+WLPSLMLLLSIAISFFT ESAAYLP LIFGTYMGWI
Sbjct: 141 LVGIKQIIPDQELSLFSLLKIRARWLPSLMLLLSIAISFFTTESAAYLPALIFGTYMGWI 200

Query: 118 YLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGY 177
           YLRYLQ+KPET+L GDPSD+FAFS+FFPEF+RPVIDPI S+F R+ CG R E S +D G+
Sbjct: 201 YLRYLQRKPETRLKGDPSDEFAFSTFFPEFLRPVIDPIGSVFGRLCCG-RFEISDEDRGH 259

Query: 178 TLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV 229
           TLGGA LPGSDPIEASRRRERGARALEERLA E+L A +S +ES +DA E+V
Sbjct: 260 TLGGAPLPGSDPIEASRRRERGARALEERLAVERLTAGESAKESGRDAVEDV 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829360|ref|XP_002882562.1| hypothetical protein ARALYDRAFT_896969 [Arabidopsis lyrata subsp. lyrata] gi|297328402|gb|EFH58821.1| hypothetical protein ARALYDRAFT_896969 [Arabidopsis lyrata subsp. lyrata]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/229 (77%), Positives = 200/229 (87%), Gaps = 1/229 (0%)

Query: 1   MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           MGK LEPVWGSKEFLKFIF+VNFL  LC+F+TA+ALYYITRLE YLYMP +GF GVLAG 
Sbjct: 77  MGKFLEPVWGSKEFLKFIFVVNFLAYLCVFVTAIALYYITRLEIYLYMPFAGFHGVLAGL 136

Query: 61  LVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR 120
           LVGIKQI+PDQE+ LLKIKAKWLPS+ML+LSIA SFFT  SAAYLPTLIFGTYMGW+YLR
Sbjct: 137 LVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLNSAAYLPTLIFGTYMGWLYLR 196

Query: 121 YLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLG 180
           YLQ++PETKL GDPSDDFAFS+FFPEF+RPVIDPIA IFHRMLCGR   TS +DHGY+  
Sbjct: 197 YLQRRPETKLRGDPSDDFAFSTFFPEFLRPVIDPIALIFHRMLCGRSNATS-EDHGYSTS 255

Query: 181 GASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV 229
           GA LPGSD  EASRRRERGARALEERL TE+L  A++ +E + DA ++V
Sbjct: 256 GAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDELQSDALDSV 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6648207|gb|AAF21205.1|AC013483_29 unknown protein [Arabidopsis thaliana]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/229 (76%), Positives = 198/229 (86%), Gaps = 1/229 (0%)

Query: 1   MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           MGK LEPVWGS EFLKFIF+VNFLT LC+F+TA+ALYYITRLE YLYMP +GF GVLAG 
Sbjct: 157 MGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYITRLEVYLYMPFAGFHGVLAGL 216

Query: 61  LVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR 120
           LVGIKQI+PDQE+ LLKIKAKWLPS+ML+LSIA SFFT +SAAYLPTLIFGTYMGW+YLR
Sbjct: 217 LVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLDSAAYLPTLIFGTYMGWLYLR 276

Query: 121 YLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLG 180
           YLQ++PETKL GDPSDDFAFS+FFPE +RPVIDPIA IFHRMLCGR   TS +DH Y+  
Sbjct: 277 YLQRRPETKLRGDPSDDFAFSTFFPELLRPVIDPIALIFHRMLCGRSNATS-EDHDYSTS 335

Query: 181 GASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV 229
           GA LPGSD  EASRRRERGARALEERL TE+L  A++ +E + D  +NV
Sbjct: 336 GAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDELQSDGLDNV 384

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398108|ref|NP_566326.1| rhomboid protein-like protein [Arabidopsis thaliana] gi|21537325|gb|AAM61666.1| unknown [Arabidopsis thaliana] gi|25083369|gb|AAN72066.1| expressed protein [Arabidopsis thaliana] gi|31711794|gb|AAP68253.1| At3g07950 [Arabidopsis thaliana] gi|332641103|gb|AEE74624.1| rhomboid protein-like protein [Arabidopsis thaliana]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/229 (76%), Positives = 198/229 (86%), Gaps = 1/229 (0%)

Query: 1   MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           MGK LEPVWGS EFLKFIF+VNFLT LC+F+TA+ALYYITRLE YLYMP +GF GVLAG 
Sbjct: 77  MGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYITRLEVYLYMPFAGFHGVLAGL 136

Query: 61  LVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR 120
           LVGIKQI+PDQE+ LLKIKAKWLPS+ML+LSIA SFFT +SAAYLPTLIFGTYMGW+YLR
Sbjct: 137 LVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLDSAAYLPTLIFGTYMGWLYLR 196

Query: 121 YLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLG 180
           YLQ++PETKL GDPSDDFAFS+FFPE +RPVIDPIA IFHRMLCGR   TS +DH Y+  
Sbjct: 197 YLQRRPETKLRGDPSDDFAFSTFFPELLRPVIDPIALIFHRMLCGRSNATS-EDHDYSTS 255

Query: 181 GASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV 229
           GA LPGSD  EASRRRERGARALEERL TE+L  A++ +E + D  +NV
Sbjct: 256 GAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDELQSDGLDNV 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585086|ref|XP_002533249.1| Transmembrane protein, putative [Ricinus communis] gi|223526929|gb|EEF29134.1| Transmembrane protein, putative [Ricinus communis]

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 188/229 (82%), Positives = 211/229 (92%), Gaps = 1/229 (0%)

Query: 1   MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           MGKLLEPVWGSKEFLKFIFIVNFLTS+C+FITA+ALYYIT  E YLYMP+SGFQGVL+GF
Sbjct: 81  MGKLLEPVWGSKEFLKFIFIVNFLTSVCVFITAIALYYITTQENYLYMPISGFQGVLSGF 140

Query: 61  LVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR 120
           LVG+KQI+PDQEL +L+IKAKWLPSL LLLSIA+SFFT ES  YLPT+IFGTY+ WIYLR
Sbjct: 141 LVGMKQIIPDQELSVLRIKAKWLPSLALLLSIAVSFFTPESVTYLPTIIFGTYLSWIYLR 200

Query: 121 YLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLG 180
           YLQ+KPETKL GDP+DDFAFS+FFPEF+RPVIDPIASIFHRMLCG R+ETS +  GYTLG
Sbjct: 201 YLQRKPETKLRGDPNDDFAFSTFFPEFLRPVIDPIASIFHRMLCG-RSETSTEAQGYTLG 259

Query: 181 GASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV 229
           GA LPGSDPIEASRRRERGARALEERLA E+LAAA+S ++ KKDA+ENV
Sbjct: 260 GAPLPGSDPIEASRRRERGARALEERLAAERLAAARSSDDLKKDASENV 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443327|ref|XP_003591941.1| Transmembrane protein [Medicago truncatula] gi|355480989|gb|AES62192.1| Transmembrane protein [Medicago truncatula]

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 168/229 (73%), Positives = 191/229 (83%), Gaps = 1/229 (0%)

Query: 1   MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           +GKLLEPVWG +EF+KFIFIVN LTSLCIFITA+ALYYITR E YLY PLSGF GV++GF
Sbjct: 90  IGKLLEPVWGPREFIKFIFIVNILTSLCIFITAIALYYITRQEIYLYTPLSGFHGVISGF 149

Query: 61  LVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR 120
           LV IKQI+PDQEL  + IK KWLPS+ LL SIA+SF+  E+  YLPT+IFGTYM WIYLR
Sbjct: 150 LVSIKQIIPDQELPFVNIKMKWLPSIALLCSIALSFWIIEATTYLPTVIFGTYMSWIYLR 209

Query: 121 YLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLG 180
           Y QKKPETKL GDPS+DFAFS+FFPE +RPVIDPIASIFHRMLCG R++ S D   Y LG
Sbjct: 210 YWQKKPETKLKGDPSEDFAFSTFFPEILRPVIDPIASIFHRMLCG-RSDASNDAEDYDLG 268

Query: 181 GASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV 229
              LPGSDPIEASRRRERGARALEERLA E+LA ++S  E + +AA NV
Sbjct: 269 SEHLPGSDPIEASRRRERGARALEERLANERLATSRSAGELQTNAAGNV 317

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513695|gb|AFK44909.1| unknown [Medicago truncatula]

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 167/229 (72%), Positives = 191/229 (83%), Gaps = 1/229 (0%)

Query: 1   MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           +GKLLEPVWG +EF+KFIFIVN LTSLCIFITA+ALYYITR E YLY PLSGF GV++GF
Sbjct: 90  IGKLLEPVWGPREFIKFIFIVNILTSLCIFITAIALYYITRQEIYLYTPLSGFHGVISGF 149

Query: 61  LVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR 120
           LV IKQI+PDQEL  + IK KWLPS+ LL SIA+SF+  E+  YLPT+IFGTYM WI+LR
Sbjct: 150 LVSIKQIIPDQELPFVNIKMKWLPSIALLCSIALSFWIIEATTYLPTVIFGTYMSWIHLR 209

Query: 121 YLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLG 180
           Y QKKPETKL GDPS+DFAFS+FFPE +RPVIDPIASIFHRMLCG R++ S D   Y LG
Sbjct: 210 YWQKKPETKLKGDPSEDFAFSTFFPEILRPVIDPIASIFHRMLCG-RSDASNDAEDYDLG 268

Query: 181 GASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV 229
              LPGSDPIEASRRRERGARALEERLA E+LA ++S  E + +AA NV
Sbjct: 269 SEHLPGSDPIEASRRRERGARALEERLANERLATSRSAGELQTNAAGNV 317

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113005|ref|XP_002316359.1| hypothetical protein POPTRDRAFT_659857 [Populus trichocarpa] gi|222865399|gb|EEF02530.1| hypothetical protein POPTRDRAFT_659857 [Populus trichocarpa]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 164/196 (83%), Positives = 180/196 (91%), Gaps = 1/196 (0%)

Query: 1   MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           MGKLLEPVWGSKEFLKFIFIVNFLTS+C+FITA++LYYITR E YLYMP+SGFQG+LAGF
Sbjct: 81  MGKLLEPVWGSKEFLKFIFIVNFLTSVCVFITAISLYYITRQENYLYMPISGFQGILAGF 140

Query: 61  LVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR 120
           LVG KQI+PDQEL LL++KAKW PSLMLL++I ISFFTAESA YLPT+IFGTYM WIYLR
Sbjct: 141 LVGTKQIIPDQELSLLRLKAKWFPSLMLLIAIVISFFTAESAKYLPTIIFGTYMSWIYLR 200

Query: 121 YLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLG 180
           Y  +KPETKL GDPSDDFAFSSFFPEF+RPVIDPIASIFHRMLCG R ETS + HG+TLG
Sbjct: 201 YFHRKPETKLRGDPSDDFAFSSFFPEFLRPVIDPIASIFHRMLCG-RFETSTEAHGHTLG 259

Query: 181 GASLPGSDPIEASRRR 196
           GA LPGSDPIEASRRR
Sbjct: 260 GAPLPGSDPIEASRRR 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097969|ref|XP_002311100.1| predicted protein [Populus trichocarpa] gi|222850920|gb|EEE88467.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 166/196 (84%), Positives = 181/196 (92%), Gaps = 1/196 (0%)

Query: 1   MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           MGKLLEPVWGSKEFLKFIFIVNFL S+C+FITA++LYYITR E YLYMP+SGFQG+LAGF
Sbjct: 81  MGKLLEPVWGSKEFLKFIFIVNFLISICVFITAISLYYITRQENYLYMPISGFQGILAGF 140

Query: 61  LVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR 120
           LVGIKQI+PDQEL LL+IKAKW PSLMLL++IAISFFTAESAAYLPTLIFGTYM WIYLR
Sbjct: 141 LVGIKQIIPDQELSLLRIKAKWFPSLMLLIAIAISFFTAESAAYLPTLIFGTYMSWIYLR 200

Query: 121 YLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLG 180
           Y Q+KPETKL GDPSDDFAFSSFFPE +RP+IDPIASIFHRMLCG R ETS + HG TLG
Sbjct: 201 YFQRKPETKLRGDPSDDFAFSSFFPESLRPIIDPIASIFHRMLCG-RFETSTEAHGDTLG 259

Query: 181 GASLPGSDPIEASRRR 196
            ASLPGSDPIEA+RRR
Sbjct: 260 DASLPGSDPIEATRRR 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2077377	304	AT3G07950 "AT3G07950" [Arabido	0.995	0.75	0.615	6.7e-72
DICTYBASE|DDB_G0278061	288	tmem115 "transmembrane protein	0.707	0.562	0.335	6.8e-24
UNIPROTKB|H9L111	258	H9L111 "Uncharacterized protei	0.790	0.701	0.296	6.9e-15
UNIPROTKB|Q12893	351	TMEM115 "Transmembrane protein	0.803	0.524	0.285	1.2e-13
MGI|MGI:1930765	350	Tmem115 "transmembrane protein	0.803	0.525	0.285	1.5e-13
RGD|1310540	350	Tmem115 "transmembrane protein	0.803	0.525	0.285	2e-13
UNIPROTKB|A4FUB8	351	TMEM115 "Transmembrane protein	0.803	0.524	0.285	4.3e-13
UNIPROTKB|E2QWQ9	351	TMEM115 "Uncharacterized prote	0.803	0.524	0.285	4.3e-13
UNIPROTKB|F1SJ20	351	TMEM115 "Uncharacterized prote	0.803	0.524	0.285	4.3e-13
ZFIN|ZDB-GENE-050913-157	361	tmem115 "transmembrane protein	0.794	0.504	0.281	7.7e-12

TAIR|locus:2077377 AT3G07950 "AT3G07950" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 141/229 (61%), Positives = 162/229 (70%)

Query:     1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
             MGK LEPVWGS EFLKFIF+VNFLT LC+F+TA+ALYYITRLE YLYMP +GF GVLAG 
Sbjct:    77 MGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYITRLEVYLYMPFAGFHGVLAGL 136

Query:    61 LVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR 120
             LVGIKQI+PDQE+ LLKIKAKWLPS+ML+LSIA SFFT +SAAYLPTLIFGTYMGW+YLR
Sbjct:   137 LVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLDSAAYLPTLIFGTYMGWLYLR 196

Query:   121 YLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLG 180
             YLQ++PETKL G               +RPVIDPIA IFHRMLCGR   TS +DH Y+  
Sbjct:   197 YLQRRPETKLRGDPSDDFAFSTFFPELLRPVIDPIALIFHRMLCGRSNATS-EDHDYSTS 255

Query:   181 GASLPGSDPIXXXXXXXXXXXXXXXXXXXXXXXXXQSVEESKKDAAENV 229
             GA LPGSD                           ++ +E + D  +NV
Sbjct:   256 GAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDELQSDGLDNV 304

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

DICTYBASE|DDB_G0278061 tmem115 "transmembrane protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 56/167 (33%), Positives = 93/167 (55%)

Query:     1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALY-YITRLETYLYMPLSGFQGVLAG 59
             +GK LEP+WGS+EF+KFI +V F +SLC F   V  + +   ++  +   + GF GV+A 
Sbjct:    39 IGKYLEPIWGSREFIKFILVVIFFSSLCSFFFFVFKFMFFGGIDLIMKANVCGFSGVIAA 98

Query:    60 FLVGIKQIVPDQEL--YLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWI 117
             F V +KQ++ +QE   +L+KI+AKW+P +++L  + +  F          +I+G ++ WI
Sbjct:    99 FSVALKQLITEQEFNFFLIKIRAKWIPFILILFRVIVFSFIGFQDRSFTLVIYGVFIAWI 158

Query:   118 YLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRMLC 164
             YLR+ Q K   K  G               ++  I  I++I  ++LC
Sbjct:   159 YLRFYQVKSGVK--GDLNESFSFYTFFPDPVQAPIKVISNIVFKILC 203

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H9L111 H9L111 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 59/199 (29%), Positives = 95/199 (47%)

Query:     2 GKLLEPVWGSKEFLKFIFIVN----FLTSLCIFITAVALYYITRLETYLY-MPLSGFQGV 56
             G+LLEP WG+ E L F  +V+     L +   F+T  A +++     YL+ + + G  G 
Sbjct:    60 GRLLEPRWGALELLVFFAVVHASVGLLGAAAYFLTYAATFHVA----YLFDVHIHGGLGF 115

Query:    57 LAGFLVGIKQIVPDQE-LYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMG 115
             LAG LV +KQ + D   L + +++ K +P L+LLL  A+   T   +  L +  FG    
Sbjct:   116 LAGVLVALKQTMGDSTVLRVPQVRMKAVPVLLLLLLAALRLATLIESPALASYGFGLLSS 175

Query:   116 WIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTET 170
             W+YLR+ Q+    +  G               ++P +   A++ H +L     C R+T  
Sbjct:   176 WVYLRFYQRHSRGR--GDMSDHFAFATFFPEILQPAVGLAANLVHTLLVKVRLC-RKTVK 232

Query:   171 SGDDHGYTLGGASLPGSDP 189
               D    +    SLPG+DP
Sbjct:   233 RYDVGAPSSITISLPGTDP 251

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|Q12893 TMEM115 "Transmembrane protein 115" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 56/196 (28%), Positives = 92/196 (46%)

Query:     2 GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-TYLY-MPLSGFQGVLAG 59
             G+LLEP+WG+ E L F  +VN    L +   A  L Y+      YL+ + + G  G L G
Sbjct:    86 GRLLEPLWGALELLIFFSVVNVSVGL-LGAFAYLLTYMASFNLVYLFTVRIHGALGFLGG 144

Query:    60 FLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIY 118
              LV +KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+Y
Sbjct:   145 VLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVY 204

Query:   119 LRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTETSGD 173
             LR+ Q+    +  G               ++PV+  +A++ H +L     C ++T    D
Sbjct:   205 LRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHSLLVKVKIC-QKTVKRYD 261

Query:   174 DHGYTLGGASLPGSDP 189
                 +    SLPG+DP
Sbjct:   262 VGAPSSITISLPGTDP 277

GO:0016021 "integral to membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008285 "negative regulation of cell proliferation" evidence=NAS

MGI|MGI:1930765 Tmem115 "transmembrane protein 115" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 56/196 (28%), Positives = 92/196 (46%)

Query:     2 GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-TYLY-MPLSGFQGVLAG 59
             G+LLEP+WG+ E L F  +VN    L +   A  L Y+      YL+ + + G  G L G
Sbjct:    86 GRLLEPLWGALELLIFFSVVNVSVGL-LGALAYLLTYMASFNLVYLFTIRIHGALGFLGG 144

Query:    60 FLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIY 118
              LV +KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+Y
Sbjct:   145 VLVALKQTMGDCVVLRVPQVRVSVVPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVY 204

Query:   119 LRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTETSGD 173
             LR+ Q+    +  G               ++PV+  +A++ H +L     C ++T    D
Sbjct:   205 LRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVKVKIC-QKTVKRYD 261

Query:   174 DHGYTLGGASLPGSDP 189
                 +    SLPG+DP
Sbjct:   262 VGAPSSITISLPGTDP 277

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1310540 Tmem115 "transmembrane protein 115" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 56/196 (28%), Positives = 92/196 (46%)

Query:     2 GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-TYLY-MPLSGFQGVLAG 59
             G+LLEP+WG+ E L F  +VN    L +   A  L Y+      YL+ + + G  G L G
Sbjct:    86 GRLLEPLWGALELLIFFSVVNVSVGL-LGAFAYLLTYMASFNLVYLFTIRIHGALGFLGG 144

Query:    60 FLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIY 118
              LV +KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+Y
Sbjct:   145 VLVALKQTMGDCVVLRVPQVRVSVVPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVY 204

Query:   119 LRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTETSGD 173
             LR+ Q+    +  G               ++PV+  +A++ H +L     C ++T    D
Sbjct:   205 LRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVKVKIC-QKTVKRYD 261

Query:   174 DHGYTLGGASLPGSDP 189
                 +    SLPG+DP
Sbjct:   262 VGAPSSITISLPGTDP 277

GO:0001302 "replicative cell aging" evidence=IEP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A4FUB8 TMEM115 "Transmembrane protein 115" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 4.3e-13, P = 4.3e-13
 Identities = 56/196 (28%), Positives = 92/196 (46%)

Query:     2 GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-TYLY-MPLSGFQGVLAG 59
             G+LLEP+WG+ E L F  +VN    L +   A  L Y+      YL+ + + G  G L G
Sbjct:    86 GRLLEPLWGALELLIFFSVVNVSVGL-LGAFAYLLTYMASFNLVYLFTVRIHGALGFLGG 144

Query:    60 FLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIY 118
              LV +KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+Y
Sbjct:   145 VLVALKQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLATLLQSPALASYGFGLISSWVY 204

Query:   119 LRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTETSGD 173
             LR+ Q+    +  G               ++PV+  +A++ H +L     C ++T    D
Sbjct:   205 LRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVKVKIC-QKTVKRYD 261

Query:   174 DHGYTLGGASLPGSDP 189
                 +    SLPG+DP
Sbjct:   262 VGAPSSITISLPGTDP 277

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QWQ9 TMEM115 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 4.3e-13, P = 4.3e-13
 Identities = 56/196 (28%), Positives = 92/196 (46%)

Query:     2 GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-TYLY-MPLSGFQGVLAG 59
             G+LLEP+WG+ E L F  +VN    L +   A  L Y+      YL+ + + G  G L G
Sbjct:    86 GRLLEPLWGALELLIFFSVVNVSVGL-LGAFAYLLTYMASFNLVYLFTIRIHGALGFLGG 144

Query:    60 FLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIY 118
              LV +KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+Y
Sbjct:   145 VLVALKQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLATLLQSPALASYGFGLLSSWVY 204

Query:   119 LRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTETSGD 173
             LR+ Q+    +  G               ++PV+  +A++ H +L     C ++T    D
Sbjct:   205 LRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVKVKIC-QKTVKRYD 261

Query:   174 DHGYTLGGASLPGSDP 189
                 +    SLPG+DP
Sbjct:   262 VGAPSSITISLPGTDP 277

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SJ20 TMEM115 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 4.3e-13, P = 4.3e-13
 Identities = 56/196 (28%), Positives = 92/196 (46%)

Query:     2 GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-TYLY-MPLSGFQGVLAG 59
             G+LLEP+WG+ E L F  +VN    L +   A  L Y+      YL+ + + G  G L G
Sbjct:    86 GRLLEPLWGALELLIFFSVVNVSVGL-LGAFAYLLTYMASFNLVYLFTIRIHGSLGFLGG 144

Query:    60 FLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIY 118
              LV +KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+Y
Sbjct:   145 VLVALKQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLATLLQSPALASYGFGLLSSWVY 204

Query:   119 LRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTETSGD 173
             LR+ Q+    +  G               ++PV+  +A++ H +L     C ++T    D
Sbjct:   205 LRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVKVKIC-QKTVKRYD 261

Query:   174 DHGYTLGGASLPGSDP 189
                 +    SLPG+DP
Sbjct:   262 VGAPSSITISLPGTDP 277

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-050913-157 tmem115 "transmembrane protein 115" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 7.7e-12, P = 7.7e-12
 Identities = 56/199 (28%), Positives = 90/199 (45%)

Query:     2 GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGF 60
             G+LLEP+WG+ E L F  +VN    L   ++ +  Y  T    YL+ + + G    L G 
Sbjct:    87 GRLLEPLWGALELLIFFAVVNVAAGLLSGLSYLFTYAATFDLDYLFAVRVYGAPAFLGGV 146

Query:    61 LVGIKQIVPDQE-LYLLKIKAKWLPSLMLLLSIAISFFTA--ESAAYLPTLIFGTYMGWI 117
             LV +KQ   D   L + +++ K  P+L LL +IA+       +++A L    +G   GW+
Sbjct:   147 LVALKQTAGDTTVLRVPQVRLKAAPALALL-AIAVLRLAGLLDTSAPLAACGYGALSGWV 205

Query:   118 YLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTETS- 171
             YLR+ Q+    +  G               ++P +   A + H  L     C +  +   
Sbjct:   206 YLRFYQRHSRGR--GDMSDHFAFASFFPEALQPAVGFAAGLVHAALVKIKICRKMVKRYD 263

Query:   172 -GDDHGYTLGGASLPGSDP 189
              G     T+   SLPG+DP
Sbjct:   264 VGAPSSITI---SLPGTDP 279

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018212001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (311 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023249001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (294 aa)				•			•		0.469
	GSVIVG00001974001	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_124, whole genome shot [...] (271 aa)							•		0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam08551	99	pfam08551, DUF1751, Eukaryotic integral membrane p	2e-26

>gnl|CDD|219898 pfam08551, DUF1751, Eukaryotic integral membrane protein (DUF1751)

 Score = 97.7 bits (244), Expect = 2e-26
 Identities = 38/66 (57%), Positives = 48/66 (72%)

Query: 1  MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
           GK LE +WGSKE LKFI +VN +T+L +F+  + LY ITR E YL +P+SG  G+LAGF
Sbjct: 34 GGKYLERLWGSKELLKFILVVNVITNLLVFLYYLLLYMITRSERYLDVPISGGYGILAGF 93

Query: 61 LVGIKQ 66
          LV  KQ
Sbjct: 94 LVAFKQ 99

This domain is found in eukaryotic integral membrane proteins. YOL107W, a Saccharomyces cerervisiae protein, has been shown to localise COP II vesicles. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG2890	326	consensus Predicted membrane protein [Function unk	100.0
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	99.64
COG0705	228	Membrane associated serine protease [Amino acid tr	99.13
PTZ00101	278	rhomboid-1 protease; Provisional	98.9
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	98.68
PRK10907	276	intramembrane serine protease GlpG; Provisional	98.62
KOG2632	258	consensus Rhomboid family proteins [Function unkno	97.52
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	97.2
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	97.17
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	96.97
KOG2980	310	consensus Integral membrane protease of the rhombo	93.67
KOG0858	239	consensus Predicted membrane protein [Function unk	93.35
KOG4463	323	consensus Uncharacterized conserved protein [Funct	89.27

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=4e-57  Score=391.76  Aligned_cols=222  Identities=43%  Similarity=0.687  Sum_probs=196.6

Q ss_pred             ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHhcCCeeEE---ee
Q 026994            1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL---LK   77 (229)
Q Consensus         1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l---~~   77 (229)
                      .|+.+||.||+.|+++||.+++.+++++.++.++++|+++.|..+++.+++|+.|+++|++||+||++||+.+..   .+
T Consensus        93 ~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r  172 (326)
T KOG2890|consen   93 GGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSGR  172 (326)
T ss_pred             cceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccchh
Confidence            489999999999999999999999999999999999999999999999999999999999999999999999876   66


Q ss_pred             echhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCCCCccccccCccccccccccccc
Q 026994           78 IKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIAS  157 (229)
Q Consensus        78 ir~k~lp~~~l~~~~~~~~~~~~~~~~~~~~l~G~l~gw~YlRf~q~~~~~~~rGD~sd~Faf~~fFP~~~~p~v~~i~~  157 (229)
                      +..|++|++.+.+++++++......+.++..++|+++||.|+||||+|+++..|||+||+|+|++|||+.+||.+.+++|
T Consensus       173 ~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~~~~~rGD~Sd~F~fvsFFP~v~qp~~~li~n  252 (326)
T KOG2890|consen  173 FLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHPTDELRGDCSDSFTFVSFFPEVLQPFFHLIAN  252 (326)
T ss_pred             hhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCCcccccCCchhceehhhhchhhhhHHHHHHHH
Confidence            77778999999999988888766677778899999999999999999998889999999999999999999999999999


Q ss_pred             ceeeeeecCccc--ccCC-CCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHhcchhhhcccccccc
Q 026994          158 IFHRMLCGRRTE--TSGD-DHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESK  222 (229)
Q Consensus       158 ~~~~~~c~~~~~--~~~~-~~~~~~~~~~lpg~~~~eaeRRR~~AlkaL~eRl~~~~~~~~~~~~~~~  222 (229)
                      .+|+++|++...  +..| +.+.+...+++||.|++|||||||+|||||||||++..++++++.++.+
T Consensus       253 ~~~~~l~~~~~~~~~~~d~~~~~~s~~~~lpg~d~~d~eRRRQ~alkaL~eRl~~~~~~p~~~~~~~~  320 (326)
T KOG2890|consen  253 TIYRILVRMGVVKKPHVDIDLDSGSVGANLPGLDPKDAERRRQLALKALEERLKKTRTAPVASYDEWD  320 (326)
T ss_pred             HHHHHHHHhccccccceecccCcccccccCCCCChhHHHHHHHHHHHHHHHHhcCcccCccccccchh
Confidence            999998554321  1112 2455666689999999999999999999999999988877665554444

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=99.64  E-value=7.4e-17  Score=121.69  Aligned_cols=66  Identities=59%  Similarity=1.068  Sum_probs=63.8

Q ss_pred             ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Q 026994            1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQ   66 (229)
Q Consensus         1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~q   66 (229)
                      .||++||.||++||++|++++++++|+++++.+++.|.+++++.+++.+++|.+|+++|++||+||
T Consensus        34 ~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~~~~~~g~lVa~kQ   99 (99)
T PF08551_consen   34 GGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGFMGVLAGFLVAFKQ   99 (99)
T ss_pred             hhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCcHHhHhheEEEEeC
Confidence            489999999999999999999999999999999999999999988889999999999999999998

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.13  E-value=5.9e-10  Score=95.26  Aligned_cols=114  Identities=24%  Similarity=0.265  Sum_probs=81.7

Q ss_pred             ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHhcCCeeEE-e---
Q 026994            1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL-L---   76 (229)
Q Consensus         1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l-~---   76 (229)
                      +|+.+|+.+|+.+|+.+|+++|+++++.+..       +... +  ..+..|+||+++|++.++.++.|...+.. .   
T Consensus        94 fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~-------~~~~-~--~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~  163 (228)
T COG0705          94 FGSNLERRLGTLRFLLFYLLSGLLAGLAQVL-------FGPK-G--GAPSLGASGAIFGLLGAYFLLFPFARILLLFLSL  163 (228)
T ss_pred             hhHHHHHHhchhHHHHHHHHHHHHHHHHHHH-------Hccc-c--cCcccchhHHHHHHHHHHHHHccccchhhhhccC
Confidence            5899999999999999999999999998633       2322 1  15788999999999999999999987655 2   


Q ss_pred             eechhHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHhhcC
Q 026994           77 KIKAKWLPSLMLLLSIAISFFTAE-SAAYLPTLIFGTYMGWIYLRYLQKK  125 (229)
Q Consensus        77 ~ir~k~lp~~~l~~~~~~~~~~~~-~~~~~~~~l~G~l~gw~YlRf~q~~  125 (229)
                      +..+..+..++++.+++....+.. ++++.+ |++|++.|++|...+.+.
T Consensus       164 ~~~~~~~i~~~~~~~~~~~~~~~~~~va~~a-Hl~G~i~G~l~~~~~~~~  212 (228)
T COG0705         164 PRPALILILIWLLYSLFSGAGSFGPSVAWSA-HLGGLIGGLLLAALLSRK  212 (228)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCchHHHHHH-HHHHHHHHHHHHHHHhhh
Confidence            222333333333344333222222 355665 999999999999877764

>PTZ00101 rhomboid-1 protease; Provisional

Probab=98.90  E-value=8.3e-09  Score=91.19  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=67.7

Q ss_pred             ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHhcCCeeEEeeech
Q 026994            1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKA   80 (229)
Q Consensus         1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l~~ir~   80 (229)
                      +|..+|+.||+++|+..|+++|+++|+++.+       +...     ...+|+||+++|+++++...+=..-. ..+.|.
T Consensus       128 ~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~-------~~~~-----~~svGASgAifGLiGa~~~~lil~w~-~~~~~~  194 (278)
T PTZ00101        128 MGFTLEKNYGIVKIIILYFLTGIYGNILSSS-------VTYC-----PIKVGASTSGMGLLGIVTSELILLWH-VIRHRE  194 (278)
T ss_pred             HHHHHHHHHChHHHHHHHHHHHHHHHHHHHH-------HccC-----CcEEehhHHHHHHHHHHHHHHHHHHH-hhccHH
Confidence            4889999999999999999999999998743       1111     24689999999999988643100000 012233


Q ss_pred             hHHHHH--HHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHHHhhcC
Q 026994           81 KWLPSL--MLLLSIAISFF-TAESAAYLPTLIFGTYMGWIYLRYLQKK  125 (229)
Q Consensus        81 k~lp~~--~l~~~~~~~~~-~~~~~~~~~~~l~G~l~gw~YlRf~q~~  125 (229)
                      +.+..+  ++++.+.+.+. .+.++.+.+ |++|++.|+++.-.+.++
T Consensus       195 ~~~~~~i~~~li~~~l~~~~~g~~Id~~a-HlGG~i~G~llg~~~~~~  241 (278)
T PTZ00101        195 RVVFNIIFFSLISFFYYFTFNGSNIDHVG-HLGGLLSGISMGILYNSQ  241 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHHHHHHhh
Confidence            333221  12222222122 123444554 888887777776666654

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.68  E-value=7.7e-09  Score=81.58  Aligned_cols=112  Identities=23%  Similarity=0.395  Sum_probs=72.1

Q ss_pred             ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHhcCCeeEE-eeec
Q 026994            1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL-LKIK   79 (229)
Q Consensus         1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l-~~ir   79 (229)
                      +|..+|+.+|++++...|+++++++++...+       .....    .+..|+||+++|++.++....|+..... .+.+
T Consensus        32 ~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~-------~~~~~----~~~~G~Sg~~~~l~~~~~~~~~~~~~~~~~~~~  100 (145)
T PF01694_consen   32 FGSLLERRLGSRRFLALYLLSGLLGSLLSLL-------FSPPN----QPYVGASGAVFGLLGAFLFLYPQNKKRLRFIYL  100 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-S---------SSHHHHHHHHHHHHHHHHCCCCCS---HC
T ss_pred             hhhhHhhhccchHHHHHHHHHHHhhhhcccc-------ccccc----cccCCCcccchHHHHHHHHHHhhccchhhcchH
Confidence            4789999999999999999999999888643       22221    1678999999999999999999875433 1222


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhhcCC
Q 026994           80 AKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKP  126 (229)
Q Consensus        80 ~k~lp~~~l~~~~~~~~~~~~~~~~~~~~l~G~l~gw~YlRf~q~~~  126 (229)
                      ...++..++.+....  .......+.+ |+.|+++|++|...+.+++
T Consensus       101 ~~~~~~~~~~~~~~~--~~~~~~~~~~-hl~G~~~G~~~~~~~~~~~  144 (145)
T PF01694_consen  101 ALVVPIIVLVIILLL--GFIPNISFLG-HLGGFLAGLLYGFLILRRP  144 (145)
T ss_dssp             CCCCCCCCCCHHHCT--SSSSTTTHHH-HHHHHHHHHHHHHHHCH--
T ss_pred             HHHHHHHHHHHHHHH--HHHHhHHHHH-HHHHHHHHHHHHHHHHHcc
Confidence            222222222222211  1133445554 8999999998888777664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=98.62  E-value=4.4e-07  Score=80.23  Aligned_cols=104  Identities=17%  Similarity=0.231  Sum_probs=63.1

Q ss_pred             ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH---HhcCCeeEEee
Q 026994            1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQ---IVPDQELYLLK   77 (229)
Q Consensus         1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~q---l~Pe~~v~l~~   77 (229)
                      +|+.+|+.+|+++|+.+|+++++++|+.+++       +.+      ..+.|+||+++|+++....   ..|+..+.   
T Consensus       161 lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~-------~~~------~~~gGaSGvVygL~g~~~~~~~~~p~~~~~---  224 (276)
T PRK10907        161 LGGAVEKRLGSGKLIVITLISALLSGWVQSK-------FSG------PWFGGLSGVVYALMGYVWLRGERDPQSGIY---  224 (276)
T ss_pred             HHHHHHHHHChHHHHHHHHHHHHHHHHHHHH-------Hcc------chhhHHHHHHHHHHHHHHHHhccccccchh---
Confidence            5889999999999999999999999998632       222      2367999999999975432   22333221   


Q ss_pred             echhHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHhh
Q 026994           78 IKAKWLPSLMLLLSIAISFFT--AESAAYLPTLIFGTYMGWIYLRYLQ  123 (229)
Q Consensus        78 ir~k~lp~~~l~~~~~~~~~~--~~~~~~~~~~l~G~l~gw~YlRf~q  123 (229)
                      ++...  ++++++.++.++..  +.++++.+ |++|+++|.+..-+..
T Consensus       225 lp~~~--~~f~llwl~~g~~~~~g~~Ian~A-HlgGli~Gll~g~~~~  269 (276)
T PRK10907        225 LPRGL--IAFALLWLVAGYFDLFGMSIANAA-HVAGLAVGLAMAFWDT  269 (276)
T ss_pred             hhHHH--HHHHHHHHHHHHHHccCcccHHHH-HHHHHHHHHHHHHHhh
Confidence            11111  12222222222221  23455554 7777777766554433

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=97.52  E-value=0.00085  Score=58.47  Aligned_cols=111  Identities=18%  Similarity=0.339  Sum_probs=79.1

Q ss_pred             ChhhhhhhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccccccccchHHHHHHHHHHHHHHhcCCeeEE---
Q 026994            1 MGKLLEPVWG-SKEFLKFIFIVNFLTSLCIFITAVALYY-ITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL---   75 (229)
Q Consensus         1 ~G~~lE~~wG-s~efl~f~lv~gi~~~l~~~~~~~~~y~-i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l---   75 (229)
                      .|...|+-.| +-+++.|..+.++.++++.++    .|. ....+.......+|.++...++++.-...-|.....+   
T Consensus        79 ~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll----~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~  154 (258)
T KOG2632|consen   79 LGSQFERTHGTTVRILMFTVLLALFSGILYLL----AYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGL  154 (258)
T ss_pred             chhHHHhhccceehHHHHHHHHHHHHHHHHHH----HHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhccc
Confidence            3678899999 888888888888888887544    333 2222222234689999999999988788888887333   


Q ss_pred             eeechhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 026994           76 LKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR  120 (229)
Q Consensus        76 ~~ir~k~lp~~~l~~~~~~~~~~~~~~~~~~~~l~G~l~gw~YlR  120 (229)
                      ..++.++.|.++++...+   .. .....+ +|++|+++|+.|..
T Consensus       155 ~siP~~l~Pw~lLi~~~~---lv-p~aSFl-ghl~GllvG~ay~~  194 (258)
T KOG2632|consen  155 FSIPIVLAPWALLIATQI---LV-PQASFL-GHLCGLLVGYAYAF  194 (258)
T ss_pred             ccccHHHHHHHHHHHHHH---Hc-cCchHH-HHHHHHHHHHHHHH
Confidence            778889999887654432   21 233444 49999999999876

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=97.20  E-value=0.0056  Score=51.43  Aligned_cols=105  Identities=21%  Similarity=0.341  Sum_probs=70.1

Q ss_pred             hhhhhhh-hC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHhcCCeeEE---
Q 026994            2 GKLLEPV-WG--SKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL---   75 (229)
Q Consensus         2 G~~lE~~-wG--s~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l---   75 (229)
                      ++.+|+. +.  +.+|+.+.+++++...+++.+.    +...-+     .++.| .+....++=.+.+..|+.++.+   
T Consensus        70 s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~----~~~~~~-----~~~l~-~~l~~~l~Y~wsr~np~~~v~~~g~  139 (197)
T PF04511_consen   70 SSSLEEGHFQGRSADYLWFLLFGASLILILSLLI----GPYFFN-----IPFLG-SSLSFALTYIWSRKNPNAQVSFFGL  139 (197)
T ss_pred             hhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh----ccchhH-----HHHHH-HHHHHHHHHHHHHhCcccceeeEEE
Confidence            5678887 44  3689999887766666555321    110001     12223 4577788888999999999976   


Q ss_pred             eeechhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhh
Q 026994           76 LKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQ  123 (229)
Q Consensus        76 ~~ir~k~lp~~~l~~~~~~~~~~~~~~~~~~~~l~G~l~gw~YlRf~q  123 (229)
                      +++|++|+|.+.++++.+.   + +. ... ..+.|+++|.+|. |++
T Consensus       140 ~~i~a~ylP~~~~~~~~l~---~-~~-~~~-~~l~Gi~~Ghly~-fl~  180 (197)
T PF04511_consen  140 FTIKAKYLPWVLLAFSLLF---G-GS-SPI-PDLLGILVGHLYY-FLK  180 (197)
T ss_pred             EEEChhhHHHHHHHHHHHh---C-CC-cHH-HHHHHHHHHHHHH-HHH
Confidence            7999999999887766543   2 21 222 3789999999988 443

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=97.17  E-value=0.00012  Score=65.76  Aligned_cols=107  Identities=18%  Similarity=0.182  Sum_probs=67.7

Q ss_pred             ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHH-hcCCeeEEeeec
Q 026994            1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQI-VPDQELYLLKIK   79 (229)
Q Consensus         1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql-~Pe~~v~l~~ir   79 (229)
                      +|-.+|...|..++...|+++++.+++++.+       +..+     .+.+|+||+++|++.|...- .-+-+.  .+=|
T Consensus       145 iGi~LE~~~G~~RiglIYl~gg~aGSlls~l-------~d~~-----~~sVGASggvfaLlgA~Ls~l~~Nw~~--m~~~  210 (316)
T KOG2289|consen  145 IGIPLEQVHGFLRIGLIYLAGGVAGSLLSSL-------FDPN-----SISVGASGGVFALLGAHLSNLLTNWTI--MKNK  210 (316)
T ss_pred             ccccHHhhcCceEEeeehhhhhhhhHHHHHH-------hccC-----CceecccHHHHHHHHHHHHHHHhhHHH--hcch
Confidence            5778999999999999999999999999854       2322     35899999999999987532 112111  1111


Q ss_pred             hhHHHHHH--HHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHH
Q 026994           80 AKWLPSLM--LLLSIAISFFT-AESAAYLPTLIFGTYMGWIYLRY  121 (229)
Q Consensus        80 ~k~lp~~~--l~~~~~~~~~~-~~~~~~~~~~l~G~l~gw~YlRf  121 (229)
                      .+.+-.+.  +++.+-+++.. .++.+|+.++..|+..||+...-
T Consensus       211 ~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~  255 (316)
T KOG2289|consen  211 FAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIG  255 (316)
T ss_pred             HHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhc
Confidence            22222222  22333232222 23446666677788888887653

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=96.97  E-value=0.00052  Score=64.00  Aligned_cols=103  Identities=20%  Similarity=0.266  Sum_probs=60.5

Q ss_pred             hhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH-HHhcCCeeEEeeechh
Q 026994            3 KLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIK-QIVPDQELYLLKIKAK   81 (229)
Q Consensus         3 ~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~-ql~Pe~~v~l~~ir~k   81 (229)
                      +.+|++-|++++.+.|+.+|+.+|+.+.+        +    ..|.+-+|.+|..+|++..+. -++-..++    +.-|
T Consensus       479 rdlEkL~g~~riAIiy~~SGitGNLASAI--------F----lpY~~eVgPa~sQ~Gila~l~vEl~qs~~i----l~~~  542 (652)
T KOG2290|consen  479 RDLEKLAGWHRIAIIYFLSGITGNLASAI--------F----LPYRAEVGPAGSQFGILACLFVELFQSWQI----LERP  542 (652)
T ss_pred             HHHHHhhcchhhheeeecccccccchhee--------e----eccccccCCcccccchHHHHHHHHHhhhHh----hhhH
Confidence            67999999999999999999999999732        1    123467788888888885543 33333333    1224


Q ss_pred             HHHHHHH-HHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHH
Q 026994           82 WLPSLML-LLSIAISFFTA---ESAAYLPTLIFGTYMGWIYLRY  121 (229)
Q Consensus        82 ~lp~~~l-~~~~~~~~~~~---~~~~~~~~~l~G~l~gw~YlRf  121 (229)
                      |-.++-+ +..++++....   ++.+|+.+.++|.+.+.+.+.+
T Consensus       543 w~a~~~Lia~~L~L~iGliPWiDN~aHlfG~i~GLl~s~~~~PY  586 (652)
T KOG2290|consen  543 WRAFFHLIATLLVLCIGLIPWIDNWAHLFGTIFGLLTSIIFLPY  586 (652)
T ss_pred             HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhhcc
Confidence            4333322 22223332222   4445554555555555554443

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=93.67  E-value=0.17  Score=45.30  Aligned_cols=75  Identities=20%  Similarity=0.216  Sum_probs=47.8

Q ss_pred             ccccchHHHHHHHHHHHHHHhcCCeeEE---eeechh-HHHHHHHHHHHHHHHhc-----CCchhHHHHHHHHHHHHHHH
Q 026994           48 MPLSGFQGVLAGFLVGIKQIVPDQELYL---LKIKAK-WLPSLMLLLSIAISFFT-----AESAAYLPTLIFGTYMGWIY  118 (229)
Q Consensus        48 ~~~~G~sg~i~g~lvA~~ql~Pe~~v~l---~~ir~k-~lp~~~l~~~~~~~~~~-----~~~~~~~~~~l~G~l~gw~Y  118 (229)
                      +|..|+||++++++.....++|+++..+   .+++.- ++++-.+ +..-++...     .+..+|..++++|..++|+.
T Consensus       221 gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~~i-~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~  299 (310)
T KOG2980|consen  221 GPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFKAI-AAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYL  299 (310)
T ss_pred             ccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHHHH-HHhhhcceeeccccchhHhhhcchHHHHHHHHHH
Confidence            4778999999999999999999999776   565553 3443322 222111111     23346666677777777765


Q ss_pred             -HHHhh
Q 026994          119 -LRYLQ  123 (229)
Q Consensus       119 -lRf~q  123 (229)
                       -|..+
T Consensus       300 ~~ri~k  305 (310)
T KOG2980|consen  300 WARIRK  305 (310)
T ss_pred             HHHHHc
Confidence             34433

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=93.35  E-value=0.79  Score=39.72  Aligned_cols=87  Identities=24%  Similarity=0.388  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHhcCCeeEE---eeechhHHHHHH
Q 026994           11 SKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL---LKIKAKWLPSLM   87 (229)
Q Consensus        11 s~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l---~~ir~k~lp~~~   87 (229)
                      +..|+.++++++++-.+.+..    .+.          .+.| .+.++.++=.+.+..|+.++.+   ++++++|+|.+.
T Consensus        93 tadf~~mllf~~~l~~~~~~~----~~~----------~fLg-~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvl  157 (239)
T KOG0858|consen   93 TADFLYMLLFGAVLLTLTGLF----VYI----------VFLG-QSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVL  157 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH----HHH----------HHHH-HHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHH
Confidence            577888888777776655432    111          1123 4577778888999999999986   899999999998


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 026994           88 LLLSIAISFFTAESAAYLPTLIFGTYMGWIYL  119 (229)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~~~l~G~l~gw~Yl  119 (229)
                      ++++.+.    +++.  +. .+.|+++|-+|.
T Consensus       158 l~fs~l~----g~~~--~~-dllGi~~GHiy~  182 (239)
T KOG0858|consen  158 LGFSFLF----GGSI--LV-DLLGIIVGHIYY  182 (239)
T ss_pred             HHHHHHh----CCch--HH-HHHhhhhheeEE
Confidence            8776543    2332  33 688999998875

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.27  E-value=0.05  Score=47.74  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=54.2

Q ss_pred             hhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHhcCCeeEE---eeec
Q 026994            3 KLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL---LKIK   79 (229)
Q Consensus         3 ~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l---~~ir   79 (229)
                      |.+||..||-+|..|++.+++.+-++.+++..++-..++|..++     +-.|.+++.+.-+-...|-....-   +++.
T Consensus        78 R~~ERlLGShky~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~~-----qp~~liFa~~~~~y~~ip~~~f~r~f~~~f~  152 (323)
T KOG4463|consen   78 RVFERLLGSHKYSVFIVFSGTVSLLLEVILLSLLKDTTANLLTS-----QPYGLIFASFIPFYLDIPVSTFFRVFGVNFS  152 (323)
T ss_pred             HHHHHHhccccceeehhHHHHHHHHHHHHHHHHHHHHHhhhhhc-----CCCceeeeeccceEEEecceeEEEeeccccc
Confidence            67899999999999999999999999988877777777775543     444456655544444444433221   4454


Q ss_pred             hhHHHHHH
Q 026994           80 AKWLPSLM   87 (229)
Q Consensus        80 ~k~lp~~~   87 (229)
                      -|..-+++
T Consensus       153 dkni~~i~  160 (323)
T KOG4463|consen  153 DKNISFIY  160 (323)
T ss_pred             ccceeeec
Confidence            45443333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.06
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	98.85
1g70_B	26	RSG-1.2 peptide; peptide-RNA complex, non-canonica	91.89

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.06  E-value=1e-09  Score=89.82  Aligned_cols=105  Identities=18%  Similarity=0.211  Sum_probs=73.2

Q ss_pred             ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH---HHhcCCeeEEee
Q 026994            1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIK---QIVPDQELYLLK   77 (229)
Q Consensus         1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~---ql~Pe~~v~l~~   77 (229)
                      +|+.+|+.||+++|+.+|+++++.+++.+++       +.+.      +..|+||+++|+++++.   ...|+.++.   
T Consensus        71 ~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~-------~~~~------~~vGaSGai~gl~g~~~~~~~~~p~~~~~---  134 (181)
T 2xov_A           71 LGGAVEKRLGSGKLIVITLISALLSGYVQQK-------FSGP------WFGGLSGVVYALMGYVWLRGERDPQSGIY---  134 (181)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-------HHCS------CCCCSHHHHHHHHHHHHHHHHHCGGGSCC---
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-------hcCC------CceeHHHHHHHHHHHHHHHHhhCcCceee---
Confidence            4889999999999999999999999998743       1221      27799999999998764   467877652   


Q ss_pred             echhHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHhhc
Q 026994           78 IKAKWLPSLMLLLSIAISFFT--AESAAYLPTLIFGTYMGWIYLRYLQK  124 (229)
Q Consensus        78 ir~k~lp~~~l~~~~~~~~~~--~~~~~~~~~~l~G~l~gw~YlRf~q~  124 (229)
                      ++.+...+  +++.++.++..  ..+..+.+ |++|++.|+++...++|
T Consensus       135 l~~~~~~~--~~~~~~~~~~~~~~~~v~~~a-HlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          135 LQRGLIIF--ALIWIVAGWFDLFGMSMANGA-HIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             CCHHHHHH--HHHHHHHHHTTSSCCSSCHHH-HHHHHHHHHHHHHHHHH
T ss_pred             eHHHHHHH--HHHHHHHHHHHhccccchHHH-HHHHHHHHHHHHHHHhc
Confidence            22222211  11222333332  23566776 99999999999887765

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=98.85  E-value=2.1e-09  Score=89.00  Aligned_cols=108  Identities=17%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH---HhcCCeeEEee
Q 026994            1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQ---IVPDQELYLLK   77 (229)
Q Consensus         1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~q---l~Pe~~v~l~~   77 (229)
                      +|+.+|+.||+++|+.+|+++++++++.+++       +.++      ...|+||+++|+++++..   ..|+. + .++
T Consensus        76 ~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~-------~~~~------~~vGaSGai~gl~g~~~~~~~~~~~~-~-~~~  140 (196)
T 2nr9_A           76 FGGMIERTFGSVKLLMLYVVASAITGYVQNY-------VSGP------AFFGLSGVVYAVLGYVFIRDKLNHHL-F-DLP  140 (196)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-------HHCS------CCCCSHHHHHHHHHHHHHHHHSSTTS-C-CCC
T ss_pred             HHHHHHHHHChHHHHHHHHHHHHHHHHHHHH-------hcCC------CeeeHHHHHHHHHHHHHHHHHhcchh-h-cch
Confidence            4889999999999999999999999998743       2222      267999999999986543   23433 1 123


Q ss_pred             echhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhhcC
Q 026994           78 IKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKK  125 (229)
Q Consensus        78 ir~k~lp~~~l~~~~~~~~~~~~~~~~~~~~l~G~l~gw~YlRf~q~~  125 (229)
                      .+...+..+++.+.+. ......++.+.+ |++|++.|+++...+.++
T Consensus       141 ~~~~~~~~~~~~~~~~-~~~~~~~v~~~a-HlgG~l~G~l~~~~~~~~  186 (196)
T 2nr9_A          141 EGFFTMLLVGIALGFI-SPLFGVEMGNAA-HISGLIVGLIWGFIDSKL  186 (196)
T ss_dssp             CSSTTTTTTTTTHHHH-SCSSCCTTCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HhccCCCccHHH-HHHHHHHHHHHHHHHHhc
Confidence            3332222222222221 110123556665 888888888877666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	98.78
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	98.76

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.4e-08  Score=80.53  Aligned_cols=106  Identities=15%  Similarity=0.108  Sum_probs=68.0

Q ss_pred             ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHhcCCeeEEeeech
Q 026994            1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKA   80 (229)
Q Consensus         1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l~~ir~   80 (229)
                      +|+.+|+.||+++++.+|+++++++++...+.       ..      ....|+||++.|+++......+...........
T Consensus        71 ~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~-------~~------~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~  137 (180)
T d3b45a1          71 LGGAVEKRLGSGKLIVITLISALLSGYVQQKF-------SG------PWFGGLSGVVYALMGYVWLRGERDPQSGIYLQR  137 (180)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-------HC------SCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCH
T ss_pred             HHHHHHHhccchhheeeeeHHHHHHHHHHHHH-------hc------cccccccchHHHHHHHHHHHhhhcchhHHhhHH
Confidence            48999999999999999999999999986431       11      245699999999987776665544432212211


Q ss_pred             hHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHh
Q 026994           81 KWLPSLMLLLSIAISFFT--AESAAYLPTLIFGTYMGWIYLRYL  122 (229)
Q Consensus        81 k~lp~~~l~~~~~~~~~~--~~~~~~~~~~l~G~l~gw~YlRf~  122 (229)
                      .......+  .+...+..  ..+..+.+ |++|+++|+++.-+.
T Consensus       138 ~~~~~~~~--~~~~~~~~~~~~~v~~~a-HlgG~l~G~~~~~~~  178 (180)
T d3b45a1         138 GLIIFALI--WIVAGWFDLFGMSMANGA-HIAGLAVGLAMAFVD  178 (180)
T ss_dssp             HHHHHHHH--HHHHHHTTSSCCSSCHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHHHHHHHhccCchHHHH-HHHHHHHHHHHHHHH
Confidence            11111111  11122221  24456665 999999999886543

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=98.76  E-value=3.4e-09  Score=85.00  Aligned_cols=109  Identities=16%  Similarity=0.123  Sum_probs=67.3

Q ss_pred             ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHhcCCeeEE-eeec
Q 026994            1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL-LKIK   79 (229)
Q Consensus         1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~ql~Pe~~v~l-~~ir   79 (229)
                      +|+.+|+.||+++++.+|++++++++++..+       ..+      .+..|+||+++|++.++....|...... .+.+
T Consensus        73 ~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~-------~~~------~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~  139 (189)
T d2nr9a1          73 FGGMIERTFGSVKLLMLYVVASAITGYVQNY-------VSG------PAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEG  139 (189)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-------HHC------SCCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCS
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-------cCC------CCcccchHHHHHHHHHHHHHHHHhhhHhccHHH
Confidence            4889999999999999999999999987632       122      3568999999999987776666555433 2333


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhhc
Q 026994           80 AKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQK  124 (229)
Q Consensus        80 ~k~lp~~~l~~~~~~~~~~~~~~~~~~~~l~G~l~gw~YlRf~q~  124 (229)
                      ......+.+.+..+.. ....+..+.+ |++|+++|.+|.-.++|
T Consensus       140 ~~~~~~~~~~~~~~~~-~~~~~v~~~a-Hl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         140 FFTMLLVGIALGFISP-LFGVEMGNAA-HISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             STTTTTTTTTHHHHSC-SSCCTTCHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ccCCChHHHH-HHHHHHHHHHHHHHHHc
Confidence            3222222222221111 1123444554 77777666665544443