Citrus Sinensis ID: 026999
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 229 | 2.2.26 [Sep-21-2011] | |||||||
| Q5R3I4 | 469 | Tetratricopeptide repeat | yes | no | 0.524 | 0.255 | 0.338 | 2e-09 | |
| Q5RFF7 | 469 | Tetratricopeptide repeat | yes | no | 0.524 | 0.255 | 0.330 | 1e-08 | |
| A3KMP2 | 465 | Tetratricopeptide repeat | yes | no | 0.524 | 0.258 | 0.303 | 2e-07 | |
| Q6DIV2 | 469 | Tetratricopeptide repeat | yes | no | 0.855 | 0.417 | 0.270 | 2e-07 | |
| A2VD82 | 469 | Tetratricopeptide repeat | N/A | no | 0.502 | 0.245 | 0.314 | 3e-07 | |
| A3KPN8 | 466 | Tetratricopeptide repeat | yes | no | 0.925 | 0.454 | 0.239 | 8e-06 |
| >sp|Q5R3I4|TTC38_HUMAN Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH--AH----DCCFKEAVQFMEEC 76
++ GI +F L+E AE+ AK+ L IN D WS H AH K+ ++FM+
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240
Query: 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 136
+ W S + HN+WH AL YL L IYD HI L+ DA+ V ++
Sbjct: 241 ETFWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANDAMLDVV--DSC 296
Query: 137 GLLLRVYVRG 146
+L R+ + G
Sbjct: 297 SMLYRLQMEG 306
|
Homo sapiens (taxid: 9606) |
| >sp|Q5RFF7|TTC38_PONAB Tetratricopeptide repeat protein 38 OS=Pongo abelii GN=TTC38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH--AH----DCCFKEAVQFMEEC 76
++ GI +F L+E AE+ AK+ L IN D WS H AH K+ ++FM+
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240
Query: 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 136
+ W S + HN+WH AL YL L IYD HI L+ A+ V ++
Sbjct: 241 ETLWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANGAMLDVV--DSC 296
Query: 137 GLLLRVYVRG 146
+L R+ + G
Sbjct: 297 SMLYRLQMEG 306
|
Pongo abelii (taxid: 9601) |
| >sp|A3KMP2|TTC38_MOUSE Tetratricopeptide repeat protein 38 OS=Mus musculus GN=Ttc38 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
+G + D + +V P+ + ++ GI +F L+E A++ AK+ L I D
Sbjct: 151 LGYQEQMRDSVARVYPFWTPDIPLNSYVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDA 210
Query: 57 WSQH--AH----DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 110
WS H AH K+ ++FM++ W S + HN+WH AL YL L
Sbjct: 211 WSVHTVAHVHEMRAEIKDGLEFMQQSEGHWKD-SDMLACHNYWHWAL-YLIEKGDYEAAL 268
Query: 111 EIYDNHIWKELE 122
IYD+HI L+
Sbjct: 269 TIYDSHILPSLQ 280
|
Mus musculus (taxid: 10090) |
| >sp|Q6DIV2|TTC38_XENTR Tetratricopeptide repeat protein 38 OS=Xenopus tropicalis GN=ttc38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 9 DIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH--AH 62
D + +VLPY ++ G+ +F LLE A + AK+ L +++ D WS H AH
Sbjct: 162 DSVARVLPYWKPGTPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVDQTDSWSVHTVAH 221
Query: 63 ----DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118
+ FM+E + W S + H +WH AL ++E L +YDNHI
Sbjct: 222 VHEMRADLDSGLAFMQETENNWKG-SDMLACHVYWHWALYFIE-KGDYEAALTLYDNHI- 278
Query: 119 KELEKPDAVHPEVYLNAL---GLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLD 175
P L+ + +L R+ + G ++V G+R K L ++ D
Sbjct: 279 ----APQCFASGTMLDVVDNSSMLYRLQLEG-VNV-GDRWKNLLQITKSHTQDHMLIFND 332
Query: 176 LLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 217
L L +++ G SK ED+ + L ++ K E Q G+
Sbjct: 333 LHFL--MSSLG--SKDEDMTRELVESMQELSKSPGENQQHGL 370
|
Xenopus tropicalis (taxid: 8364) |
| >sp|A2VD82|TTC38_XENLA Tetratricopeptide repeat protein 38 OS=Xenopus laevis GN=ttc38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
+G D + +VLPY + E ++ G+ +F LLE A + AK+ L + + D
Sbjct: 154 LGEQRQMRDSVARVLPYWKPETPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVERTDS 213
Query: 57 WSQH--AH----DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 110
WS H AH + FM+E + W S + H +WH AL YL L
Sbjct: 214 WSVHTIAHVHEMKADLDSGLSFMQETENNWKG-SDMLACHVYWHWAL-YLIEKGDYEAAL 271
Query: 111 EIYDNHI 117
+YDNHI
Sbjct: 272 TLYDNHI 278
|
Xenopus laevis (taxid: 8355) |
| >sp|A3KPN8|TTC38_DANRE Tetratricopeptide repeat protein 38 OS=Danio rerio GN=ttc38 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 26/238 (10%)
Query: 1 MGRPDLCFDIIHQVLP--------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52
+G D + +V+P Y Q I G+ +F LLE +AE+ AK+ L +
Sbjct: 154 LGEQTQMRDSVARVMPHWKPHMPLYRQ----IKGMYSFGLLETRLYDEAEKMAKEALSLT 209
Query: 53 KHDCWSQHA----HD--CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 106
D WS HA H+ ++ + FM W+ C + HN+WH AL ++E +
Sbjct: 210 PEDGWSVHAVAHVHEMKAEVEKGLNFMASTEKNWTVC-DMLACHNYWHWALYHIEKGN-Y 267
Query: 107 RKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQA 166
L+I+D + + K A+ V ++ LL R+ + G G R + L +
Sbjct: 268 EAALKIFDEQVSQRCVKSGAMLDIV--DSCSLLYRLELEGV--SVGERYRELLQVTQPHS 323
Query: 167 NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDIC 224
+ DL L + + + LL+ L+ + +Q +Q +V +C
Sbjct: 324 EDHTLLFNDLHFLMVSLGSKDTGTTQRLLESLQELAKDPAENRQ--LQIAERVGLPMC 379
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Danio rerio (taxid: 7955) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 229 | ||||||
| 224100425 | 472 | predicted protein [Populus trichocarpa] | 0.960 | 0.466 | 0.721 | 5e-87 | |
| 357486429 | 468 | Tetratricopeptide repeat protein [Medica | 0.947 | 0.463 | 0.659 | 5e-84 | |
| 357486431 | 392 | Tetratricopeptide repeat protein [Medica | 0.947 | 0.553 | 0.659 | 7e-84 | |
| 225424865 | 468 | PREDICTED: tetratricopeptide repeat prot | 0.947 | 0.463 | 0.681 | 2e-79 | |
| 356500732 | 468 | PREDICTED: tetratricopeptide repeat prot | 0.956 | 0.467 | 0.623 | 2e-78 | |
| 18396209 | 468 | StaR-like protein domain-containing prot | 0.973 | 0.476 | 0.624 | 2e-77 | |
| 13605637 | 468 | At1g27150/T7N9_21 [Arabidopsis thaliana] | 0.973 | 0.476 | 0.624 | 3e-77 | |
| 21537367 | 468 | unknown [Arabidopsis thaliana] | 0.973 | 0.476 | 0.620 | 4e-76 | |
| 449434849 | 469 | PREDICTED: tetratricopeptide repeat prot | 0.947 | 0.462 | 0.618 | 1e-75 | |
| 356497832 | 469 | PREDICTED: tetratricopeptide repeat prot | 0.960 | 0.469 | 0.628 | 4e-75 |
| >gi|224100425|ref|XP_002311871.1| predicted protein [Populus trichocarpa] gi|222851691|gb|EEE89238.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 163/226 (72%), Positives = 191/226 (84%), Gaps = 6/226 (2%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MGRPDL D++ QVLP NQ+ED+I+G+LAFSLLELG+M+DAEEAA+KG +INK D W+QH
Sbjct: 138 MGRPDLSLDLVQQVLPRNQEEDYIYGMLAFSLLELGRMADAEEAARKGYEINKQDYWAQH 197
Query: 61 A------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
A + C FK+AV FMEECSS+WSSC SFM THNWWHVALCYLEGH+P+RKVLE+YD
Sbjct: 198 AMCHVLQYQCRFKDAVDFMEECSSSWSSCLSFMLTHNWWHVALCYLEGHAPVRKVLEVYD 257
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
HIWKELEK DAV PEVYLNALGLLLRVY+RGELD+F +RL LA C+ DQANWYLE HL
Sbjct: 258 QHIWKELEKADAVPPEVYLNALGLLLRVYLRGELDIFDDRLNTLASCITDQANWYLEWHL 317
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVS 220
D+LILWALA TGE SKAEDLL+GLKSR KM KKKQ+ MQ ++++
Sbjct: 318 DVLILWALAKTGEPSKAEDLLEGLKSRIQKMSKKKQQRMQKVIRLA 363
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486429|ref|XP_003613502.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355514837|gb|AES96460.1| Tetratricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 147/223 (65%), Positives = 185/223 (82%), Gaps = 6/223 (2%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MGRPDL +++QVLP N+ E+FI+G+LAF LLELGQM +AEEAAK+G +IN D WSQH
Sbjct: 137 MGRPDLSLSLVNQVLPQNEGENFIYGMLAFPLLELGQMKEAEEAAKRGFEINNQDGWSQH 196
Query: 61 A------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
A ++C F+EAV+FMEECS +W+S SFM THNWWHVALCYLEG++PM++VLE+YD
Sbjct: 197 ATCHVLQYECRFREAVEFMEECSPSWNSFLSFMLTHNWWHVALCYLEGNAPMQRVLEVYD 256
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
N+IWKEL+K DA EVYLNA+ LLLR+ VR EL+ FG+RLK+LAD +ADQANWYLE HL
Sbjct: 257 NYIWKELDKTDATVAEVYLNAVALLLRLCVRDELEFFGDRLKMLADRLADQANWYLEWHL 316
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 217
D+L +WALA TG++SKAE+LLKGLK R S+M KKKQ++MQ G+
Sbjct: 317 DILTVWALAKTGQISKAEELLKGLKERISRMTKKKQQIMQKGM 359
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486431|ref|XP_003613503.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355514838|gb|AES96461.1| Tetratricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 147/223 (65%), Positives = 185/223 (82%), Gaps = 6/223 (2%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MGRPDL +++QVLP N+ E+FI+G+LAF LLELGQM +AEEAAK+G +IN D WSQH
Sbjct: 137 MGRPDLSLSLVNQVLPQNEGENFIYGMLAFPLLELGQMKEAEEAAKRGFEINNQDGWSQH 196
Query: 61 A------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
A ++C F+EAV+FMEECS +W+S SFM THNWWHVALCYLEG++PM++VLE+YD
Sbjct: 197 ATCHVLQYECRFREAVEFMEECSPSWNSFLSFMLTHNWWHVALCYLEGNAPMQRVLEVYD 256
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
N+IWKEL+K DA EVYLNA+ LLLR+ VR EL+ FG+RLK+LAD +ADQANWYLE HL
Sbjct: 257 NYIWKELDKTDATVAEVYLNAVALLLRLCVRDELEFFGDRLKMLADRLADQANWYLEWHL 316
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 217
D+L +WALA TG++SKAE+LLKGLK R S+M KKKQ++MQ G+
Sbjct: 317 DILTVWALAKTGQISKAEELLKGLKERISRMTKKKQQIMQKGM 359
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424865|ref|XP_002274190.1| PREDICTED: tetratricopeptide repeat protein 38 [Vitis vinifera] gi|296086448|emb|CBI32037.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 152/223 (68%), Positives = 182/223 (81%), Gaps = 6/223 (2%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MGRPDL F+++ QVL NQ E++I+G+LAFSLLE GQM DAE+AAK+G +INK DCWSQH
Sbjct: 137 MGRPDLSFNLVQQVLHENQNENYIYGMLAFSLLECGQMVDAEKAAKRGFEINKQDCWSQH 196
Query: 61 A------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
A ++C FKEAV+FMEECSS+WS CSSFM THNWWHV+LCYLEGHS +RKVLE+YD
Sbjct: 197 ALCHVLQYECRFKEAVEFMEECSSSWSLCSSFMLTHNWWHVSLCYLEGHSSIRKVLEVYD 256
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
N+IWKELE+PDA EVYLNALGLLLRVYVRG VF +RLK L + DQ+ WY+E HL
Sbjct: 257 NYIWKELERPDAASAEVYLNALGLLLRVYVRGHAVVFEDRLKTLVSRLTDQSTWYIEWHL 316
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 217
DLL +WALA+TGE+ K E LL+GLKSR S+M KKKQ+ MQ G+
Sbjct: 317 DLLTIWALASTGELVKTEALLQGLKSRLSRMSKKKQQTMQRGI 359
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500732|ref|XP_003519185.1| PREDICTED: tetratricopeptide repeat protein 38-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/226 (62%), Positives = 184/226 (81%), Gaps = 7/226 (3%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG P L +I +VLP+N+ E+FI+G+LAF LLELG+M +AE+AAK+G +INK D W+QH
Sbjct: 138 MGLPGLSLSLIQKVLPHNEGENFIYGMLAFPLLELGRMEEAEKAAKRGFEINKQDSWAQH 197
Query: 61 A------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
A + CCF+EAV+FMEECSS+ SSFM THNWWHVALCYLEG++P ++VLEIYD
Sbjct: 198 ALCHVLQYKCCFREAVKFMEECSSS-WGSSSFMLTHNWWHVALCYLEGNAPRQRVLEIYD 256
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
N+IWKEL++ D++ EVYLNA GLLLR+YVRGELD+ G+RLK+LA+C+ +Q NWY+E H
Sbjct: 257 NYIWKELDRNDSMSAEVYLNAAGLLLRLYVRGELDIIGDRLKMLAECLTNQENWYMEWHF 316
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVS 220
D+LI+W LA TGE+SKAEDLLKGLK+R +M KKKQ+ MQ G+ ++
Sbjct: 317 DVLIVWTLAKTGEISKAEDLLKGLKNRFLRMTKKKQQRMQRGMMLA 362
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18396209|ref|NP_564271.1| StaR-like protein domain-containing protein [Arabidopsis thaliana] gi|8778861|gb|AAF79860.1|AC000348_13 T7N9.21 [Arabidopsis thaliana] gi|332192666|gb|AEE30787.1| StaR-like protein domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/229 (62%), Positives = 174/229 (75%), Gaps = 6/229 (2%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG+PD ++ QVLP NQ+E +I G+LAF LLELG+M +A A++KG +INK D W+ H
Sbjct: 137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196
Query: 61 ------AHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
H+C FKEAV+FME + TW SCSSFMYTHNWWHVALCYLEG SPM KV EIYD
Sbjct: 197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWWHVALCYLEGGSPMSKVEEIYD 256
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
+HIWKELEK DAV PEVYLNALGLL+R+ VR LD F +RLK LA + +QANWYLE HL
Sbjct: 257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQANWYLEWHL 316
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 223
D+LI+WALA GE S+A +LL+GLK R SK KKKQ++MQ G+Q+ +
Sbjct: 317 DILIVWALAKVGETSRAHELLEGLKFRLSKKNKKKQQVMQKGIQLGEAV 365
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13605637|gb|AAK32812.1|AF361799_1 At1g27150/T7N9_21 [Arabidopsis thaliana] gi|27363406|gb|AAO11622.1| At1g27150/T7N9_21 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 143/229 (62%), Positives = 173/229 (75%), Gaps = 6/229 (2%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG+PD ++ QVLP NQ+E +I G+LAF LLELG+M +A A++KG +INK D W+ H
Sbjct: 137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196
Query: 61 ------AHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
H+C FKEAV+FME + TW SCSSFMYTHNWWHVALCYLEG SPM KV EIYD
Sbjct: 197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWWHVALCYLEGGSPMSKVEEIYD 256
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
+HIWKELEK DAV PEVYLNALGLL+R+ VR LD F +RLK LA + +QANWYLE HL
Sbjct: 257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQANWYLEWHL 316
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 223
D+LI+WALA GE S+A LL+GLK R SK KKKQ++MQ G+Q+ +
Sbjct: 317 DILIVWALAKVGETSRAHKLLEGLKFRLSKKNKKKQQVMQKGIQLGEAV 365
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21537367|gb|AAM61708.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 142/229 (62%), Positives = 173/229 (75%), Gaps = 6/229 (2%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG+PD ++ QVLP NQ+E +I G+LAF LLELG+M +A A++KG +INK D W+ H
Sbjct: 137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196
Query: 61 ------AHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
H+C FKEAV+FME + TW SCSSFMYTHNW HVALCYLEG SPM KV EIYD
Sbjct: 197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWRHVALCYLEGGSPMSKVEEIYD 256
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
+HIWKELEK DAV PEVYLNALGLL+R+ VR LD F +RLK LA + +QANWYLE HL
Sbjct: 257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQANWYLEWHL 316
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 223
D+LI+WALA GE S+A +LL+GLK R SK KKKQ++MQ G+Q+ +
Sbjct: 317 DILIVWALAKVGETSRAHELLEGLKFRLSKKNKKKQQVMQKGIQLGEAV 365
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434849|ref|XP_004135208.1| PREDICTED: tetratricopeptide repeat protein 38-like [Cucumis sativus] gi|449478487|ref|XP_004155331.1| PREDICTED: tetratricopeptide repeat protein 38-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/223 (61%), Positives = 170/223 (76%), Gaps = 6/223 (2%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
+G DL ++ QVLP NQ+E FI+G+LAF LLELG M +AE+AA++GL INK D W+QH
Sbjct: 137 LGSADLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKAARRGLDINKKDGWAQH 196
Query: 61 A------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
A + C FKEAV+FME CS +W C SFM THNWWHVALCYLE +SP+ K+LEIYD
Sbjct: 197 ALCHVLQYRCHFKEAVEFMETCSPSWHDCVSFMVTHNWWHVALCYLEANSPLSKILEIYD 256
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
N+IWKELEKPDA+ PEVYLNALGL+LR++VRGE D RLK+LA+ + D+ANW+LE H
Sbjct: 257 NYIWKELEKPDAIGPEVYLNALGLMLRLFVRGEYDPCEGRLKILANVLTDKANWHLEWHF 316
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 217
D+L LWALA GE+ A++LL LKSR SKM KK+E MQ V
Sbjct: 317 DILTLWALAKAGEIFAADELLGSLKSRLSKMTAKKREKMQRRV 359
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497832|ref|XP_003517761.1| PREDICTED: tetratricopeptide repeat protein 38-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 142/226 (62%), Positives = 186/226 (82%), Gaps = 6/226 (2%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG P L +I Q+LP+N+ E++I+G+LAF LLELG+M +AEEAAK+G +INK DCWSQH
Sbjct: 137 MGLPGLSLSLIQQILPHNEGENYIYGMLAFPLLELGRMEEAEEAAKRGFEINKQDCWSQH 196
Query: 61 A------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
A + CCF+EAV+FMEECSS+W S SSFM THNWWHVALCYLEG++P ++VLEIYD
Sbjct: 197 ALCHVLQYKCCFREAVKFMEECSSSWGSSSSFMLTHNWWHVALCYLEGNAPRQRVLEIYD 256
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
N+IWKELE+ D++ +VYLNA LLL++YVRGELD+ G+RLK+L++C+ +Q NWY+E H
Sbjct: 257 NYIWKELERNDSMSADVYLNAAALLLQLYVRGELDIVGDRLKILSECLTNQENWYMEWHF 316
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVS 220
D+LI+W LA TGE+SKAEDLLKGLK+R +M KKKQ+ MQ G+ ++
Sbjct: 317 DVLIVWTLAKTGEISKAEDLLKGLKNRLLRMTKKKQQRMQRGMMLA 362
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 229 | ||||||
| TAIR|locus:2205809 | 468 | AT1G27150 [Arabidopsis thalian | 0.973 | 0.476 | 0.598 | 1.4e-69 | |
| TAIR|locus:2205764 | 483 | AT1G27110 "AT1G27110" [Arabido | 0.973 | 0.461 | 0.482 | 4.3e-54 | |
| UNIPROTKB|Q0C3E4 | 438 | HNE_1027 "Putative uncharacter | 0.786 | 0.410 | 0.306 | 2.1e-12 | |
| WB|WBGene00013216 | 467 | Y54G11A.7 [Caenorhabditis eleg | 0.807 | 0.396 | 0.276 | 3.9e-09 | |
| MGI|MGI:2146198 | 465 | Ttc38 "tetratricopeptide repea | 0.768 | 0.378 | 0.246 | 1.1e-06 | |
| UNIPROTKB|Q5LPG1 | 456 | SPO2887 "Uncharacterized prote | 0.799 | 0.401 | 0.287 | 2.5e-06 | |
| TIGR_CMR|SPO_2887 | 456 | SPO_2887 "conserved hypothetic | 0.799 | 0.401 | 0.287 | 2.5e-06 | |
| ZFIN|ZDB-GENE-050522-318 | 466 | ttc38 "tetratricopeptide repea | 0.877 | 0.431 | 0.237 | 1.4e-05 |
| TAIR|locus:2205809 AT1G27150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 137/229 (59%), Positives = 167/229 (72%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG+PD ++ QVLP NQ+E +I G+LAF LLELG+M +A A++KG +INK D W+ H
Sbjct: 137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196
Query: 61 A------HDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
H+C FKEAV+FME FMYTHNWWHVALCYLEG SPM KV EIYD
Sbjct: 197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWWHVALCYLEGGSPMSKVEEIYD 256
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
+HIWKELEK DAV PEVYLNALGLL+R+ VR LD F +RLK LA + +QANWYLE HL
Sbjct: 257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQANWYLEWHL 316
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 223
D+LI+WALA GE S+A +LL+GLK R SK KKKQ++MQ G+Q+ +
Sbjct: 317 DILIVWALAKVGETSRAHELLEGLKFRLSKKNKKKQQVMQKGIQLGEAV 365
|
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| TAIR|locus:2205764 AT1G27110 "AT1G27110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 111/230 (48%), Positives = 156/230 (67%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MGR DL + ++LP N+ + ++ G+LAF L+ELG + +AEEAA+KG +IN++D W+ H
Sbjct: 148 MGRHDLSLPLFRKILPQNEGQVYVNGMLAFCLIELGHLREAEEAARKGCEINENDSWAHH 207
Query: 61 A--H----DCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
A H +C FKEAV+FMEE ++HNWWHVA+CYLEG S + KV E+YD
Sbjct: 208 ALCHVLQTECRFKEAVKFMEEHSDSWDSCSSLRFSHNWWHVAVCYLEGGSHISKVEEVYD 267
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDV-FGNRLKVLADCVADQANWYLECH 173
+ +WKELEK DAV +VY +ALGLLLR+ RG+LD F +RL+ LAD + D+A WY +
Sbjct: 268 HQMWKELEKDDAVARDVYTDALGLLLRLDTRGKLDDGFQDRLEKLADSLTDKAMWYQDWL 327
Query: 174 LDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 223
D+ +WAL+ + S A +LL+GLKSR S M KKQ+LMQ + ++ +
Sbjct: 328 FDITTIWALSKVEKTSLAHELLEGLKSRTSAMNPKKQKLMQKAILLAEAV 377
|
|
| UNIPROTKB|Q0C3E4 HNE_1027 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 60/196 (30%), Positives = 91/196 (46%)
Query: 9 DIIHQVLP-YNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--HD 63
D I + LP +++ + F+ G+LAF L E G AE A ++ L+ D W+ HA H
Sbjct: 144 DRIARALPAWDKLPERSFLLGMLAFGLEEAGDYPRAEAAGREALEREPTDSWAHHAVVHV 203
Query: 64 CCFK----EAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119
+ E F+ F+ HNWWH+ALC+LE L++YD+ I +
Sbjct: 204 LEMQGRAEEGRDFIRRRREHWAQPDSFLKIHNWWHLALCHLE-LGEFEAALQLYDDEI-R 261
Query: 120 ELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLIL 179
E A++ +A LL R++V G +D+ G R + LAD A+ D+
Sbjct: 262 AGESGIAMN---LADAAALLWRLHVIG-VDL-GERWEELADAWTQHADGRCYPFNDMHAA 316
Query: 180 WALANTGEVSKAEDLL 195
A G + A DLL
Sbjct: 317 MAFIGAGRRNDALDLL 332
|
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| WB|WBGene00013216 Y54G11A.7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 153 (58.9 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 58/210 (27%), Positives = 99/210 (47%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--H----DCCFKEAVQFMEEX 76
++ G+ AF L E G DAE A + L++N+ DCW+ HA H + KE +FM +
Sbjct: 181 YLHGMYAFGLEECGIYDDAETQADRALQLNRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 240
Query: 77 XXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 136
+ +HN+WH AL ++E ++ L I+D I K +++ V +A
Sbjct: 241 EDDWRQGW-MLASHNYWHTALFHIE-YAEYESALGIFDREIANRFNKTNSLLDMV--DAS 296
Query: 137 GLLLRVYVRGELDVFGNR---LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAED 193
LL R+ + G ++V +R ++ L+ + + + + + HL L I + ED
Sbjct: 297 SLLWRLELEG-VNVGRDRWRKIEHLSKFIDNHSIVFNDVHLGLAIY----------RQED 345
Query: 194 LLKGLKSRHSKMIKKKQELMQTGVQVSSDI 223
L K R+S + K L + Q+S I
Sbjct: 346 LETEKKLRNS-LEKYSSLLSEDNAQISKTI 374
|
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| MGI|MGI:2146198 Ttc38 "tetratricopeptide repeat domain 38" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 47/191 (24%), Positives = 79/191 (41%)
Query: 15 LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS----QHAHDCC--FKE 68
+P N ++ GI +F L+E A++ AK+ L I D WS H H+ K+
Sbjct: 172 IPLNS---YVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDAWSVHTVAHVHEMRAEIKD 228
Query: 69 AVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH 128
++FM++ + HN+WH AL YL L IYD+HI L+ +
Sbjct: 229 GLEFMQQSEGHWKDSD-MLACHNYWHWAL-YLIEKGDYEAALTIYDSHILPSLQASGTML 286
Query: 129 PEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEV 188
V ++ +L R+ + G G R + + ++ D L A ++
Sbjct: 287 DVV--DSCSMLYRLQMEGV--PLGQRWQTVLPVTQKHTRDHILLFNDAHFLMASLGARDL 342
Query: 189 SKAEDLLKGLK 199
+LL L+
Sbjct: 343 QTTRELLTTLQ 353
|
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| UNIPROTKB|Q5LPG1 SPO2887 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 59/205 (28%), Positives = 94/205 (45%)
Query: 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----HDCCFKE--A 69
P + ++ G AF+L E G AE A ++ L + D W HA H+ +
Sbjct: 157 PDHAGRGYLLGCHAFALEETGAYDKAEIAGRQALWMVSDDAWGLHAVAHVHEMKGQSELG 216
Query: 70 VQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP 129
+ ++ F Y H WWH AL +L+ + +V ++YD+ I K+ K D +
Sbjct: 217 LDWLAGREAAWSHCNNFRY-HVWWHKALMHLD-QGQIDQVFDLYDSAIRKD--KTDD-YR 271
Query: 130 EVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVS 189
++ NA LL R+ + G ++V G+R + LAD A + DL L AL TG+
Sbjct: 272 DIS-NATSLLSRLELEG-VNV-GDRWEELADLSAARTEDGCLIFADLHYLLAL--TGDTR 326
Query: 190 KAEDLLKGLKSRHSKMIKKKQELMQ 214
ED + SR IK+ ++ Q
Sbjct: 327 --EDAI----SRMLHRIKRDADMAQ 345
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| TIGR_CMR|SPO_2887 SPO_2887 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 59/205 (28%), Positives = 94/205 (45%)
Query: 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----HDCCFKE--A 69
P + ++ G AF+L E G AE A ++ L + D W HA H+ +
Sbjct: 157 PDHAGRGYLLGCHAFALEETGAYDKAEIAGRQALWMVSDDAWGLHAVAHVHEMKGQSELG 216
Query: 70 VQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP 129
+ ++ F Y H WWH AL +L+ + +V ++YD+ I K+ K D +
Sbjct: 217 LDWLAGREAAWSHCNNFRY-HVWWHKALMHLD-QGQIDQVFDLYDSAIRKD--KTDD-YR 271
Query: 130 EVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVS 189
++ NA LL R+ + G ++V G+R + LAD A + DL L AL TG+
Sbjct: 272 DIS-NATSLLSRLELEG-VNV-GDRWEELADLSAARTEDGCLIFADLHYLLAL--TGDTR 326
Query: 190 KAEDLLKGLKSRHSKMIKKKQELMQ 214
ED + SR IK+ ++ Q
Sbjct: 327 --EDAI----SRMLHRIKRDADMAQ 345
|
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| ZFIN|ZDB-GENE-050522-318 ttc38 "tetratricopeptide repeat domain 38" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 51/215 (23%), Positives = 91/215 (42%)
Query: 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----HDCCFK--EA 69
P+ +I G+ +F LLE +AE+ AK+ L + D WS HA H+ + +
Sbjct: 173 PHMPLYSYIKGMYSFGLLETRLYDEAEKMAKEALSLTPEDGWSVHAVAHVHEMKAEVDKG 232
Query: 70 VQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP 129
+ FM + HN+WH AL ++E + L+I+D + + K A+
Sbjct: 233 LNFMASTEKNWMVCD-MLACHNYWHWALYHIEKGN-YEAALKIFDEQVSQRCVKSGAMLD 290
Query: 130 EVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVS 189
V ++ LL R+ + G + V G R + L + + DL L + +
Sbjct: 291 IV--DSCSLLYRLELEG-VSV-GERYRELLQVTQPHSEDHTLLFNDLHFLMVSLGSKDTG 346
Query: 190 KAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDIC 224
+ LL+ L+ + +Q +Q +V +C
Sbjct: 347 TTQRLLESLQELAKDPAENRQ--LQIAERVGLPMC 379
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.139 0.448 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 229 219 0.00092 112 3 11 22 0.47 32
32 0.39 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 610 (65 KB)
Total size of DFA: 210 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.36u 0.09s 19.45t Elapsed: 00:00:01
Total cpu time: 19.36u 0.09s 19.45t Elapsed: 00:00:01
Start: Thu May 9 18:21:32 2013 End: Thu May 9 18:21:33 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00082006 | hypothetical protein (472 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 229 | |||
| cd05804 | 355 | cd05804, StaR_like, StaR_like; a well-conserved pr | 2e-63 |
| >gnl|CDD|100115 cd05804, StaR_like, StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Score = 200 bits (512), Expect = 2e-63
Identities = 79/225 (35%), Positives = 102/225 (45%), Gaps = 12/225 (5%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
G D ++ P N ++ G+LAF L E GQ AEEAA++ L++N D W+ H
Sbjct: 93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVH 152
Query: 61 A------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114
A FKE + FME TW CSS + HNWWH+AL YLE L IYD
Sbjct: 153 AVAHVLEMQGRFKEGIAFMESWRDTW-DCSSMLRGHNWWHLALFYLERGDY-EAALAIYD 210
Query: 115 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174
HI E A L+A LL R+ + G G+R + LAD A +
Sbjct: 211 THIAPSAESDPA---LDLLDAASLLWRLELAGH-VDVGDRWEDLADYAAWHFPDHGLAFN 266
Query: 175 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQV 219
DL ALA G+ + LL LK R S KQ G+ +
Sbjct: 267 DLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPL 311
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A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. Length = 355 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.94 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.12 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.03 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.01 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.98 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.97 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.88 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.87 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.67 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.67 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.64 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.63 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.62 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.6 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.59 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.58 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 98.54 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.53 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 98.48 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.48 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.44 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.4 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.39 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.37 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.34 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.33 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.26 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.25 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.25 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.23 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.21 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.21 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.15 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.12 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.1 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.1 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.1 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.08 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.08 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.02 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.01 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.96 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.93 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.93 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.93 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.92 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.89 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.89 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.88 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.87 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.86 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.85 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.83 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.82 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.8 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.78 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.75 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 97.72 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.71 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.68 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.61 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.58 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.43 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.39 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.37 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.3 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.29 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.25 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.25 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.22 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.19 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.18 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.16 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.14 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.12 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.1 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.08 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.06 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 97.04 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.01 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.0 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 96.97 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.95 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.95 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.94 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 96.82 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.82 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 96.81 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 96.78 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 96.78 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 96.76 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 96.72 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 96.68 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 96.67 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 96.63 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 96.57 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.54 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 96.53 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 96.51 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.47 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 96.44 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 96.37 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.29 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.13 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.12 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.03 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 95.89 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 95.83 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.73 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 95.67 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 95.64 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 95.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 95.51 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.41 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 95.4 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.36 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 95.35 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.28 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 95.22 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.93 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.83 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 94.82 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.81 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 94.65 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 94.6 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 94.52 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.46 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 94.07 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 93.94 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.85 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.81 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 93.78 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.73 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.62 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 93.46 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.35 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 93.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 93.03 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.95 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 92.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 92.66 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.64 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.39 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 92.11 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.06 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 92.01 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 91.88 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 91.65 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 91.58 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.53 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 91.32 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 91.18 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 90.9 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 90.78 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 90.69 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.63 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.51 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.9 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.64 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.63 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 89.42 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 89.29 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 89.18 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 88.54 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 88.45 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.2 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 88.18 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.39 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 86.92 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 86.5 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 86.2 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 86.16 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.7 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 85.48 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 85.0 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.97 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 84.83 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.59 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.05 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 83.66 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 83.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 83.27 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 82.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 82.52 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 82.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 82.04 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 81.99 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 81.97 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.79 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.03 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 80.96 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 80.34 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 80.08 |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=296.87 Aligned_cols=208 Identities=34% Similarity=0.548 Sum_probs=181.5
Q ss_pred CCChhHHHHHHHhhCCCC----CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYN----QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~----~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi 70 (229)
+|+..++++.++|++|.| |.++|++||+||+|+|+|.|++||+.++|||+|||+|+||+|+ |.||++||+
T Consensus 150 ~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 150 NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence 589999999999999985 3478999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccc
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDV 150 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~ 150 (229)
+||+..+++|.. +.++.+|||||.||||++.+ +|+.|++|||++|+++++| .|++|++|||++.|+++
T Consensus 230 eFM~~ted~Wr~-s~mlasHNyWH~Al~~iE~a-eye~aleIyD~ei~k~l~k---------~Da~a~~~~ld~dgv~~- 297 (491)
T KOG2610|consen 230 EFMYKTEDDWRQ-SWMLASHNYWHTALFHIEGA-EYEKALEIYDREIWKRLEK---------DDAVARDVYLDLDGVDL- 297 (491)
T ss_pred HHHHhcccchhh-hhHHHhhhhHHHHHhhhccc-chhHHHHHHHHHHHHHhhc---------cchhhhhhhhhhhhHHh-
Confidence 999999999995 88999999999999999975 9999999999999998754 48999999999999975
Q ss_pred ccccHHH---HHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhh
Q 026999 151 FGNRLKV---LADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 223 (229)
Q Consensus 151 vg~rW~~---la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 223 (229)
-.++|.. |++....+..++.-+..|+-..|++..-.....+..|++ ++++...++ .|..++++|.|.+.+
T Consensus 298 ~~d~~~kld~la~~l~d~a~~~~d~~~~itt~~~~~~~~~~~l~~~ll~-~~~~ls~~n--~q~~~t~gi~l~~~~ 370 (491)
T KOG2610|consen 298 RSDLWRKLDKLADSLTDKAMWYQDWLFDITTIWALSKVEKTSLAHELLE-LKSLLSEDN--AQISKTKGIPLYDGM 370 (491)
T ss_pred HHHHHHHHHhhhhhhcchhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHH-HHHHhhhhh--hhhhhhhccchHHHh
Confidence 2478884 455555555555555556666899999999999999999 888876643 567799999998875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=198.79 Aligned_cols=216 Identities=35% Similarity=0.502 Sum_probs=180.9
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
..+...+....|..|.++++++++|+++.++|++++|++.++++++++|+++|++|. .+|++++|+.+++++.+
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 97 DHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred hhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 334444444557788999999999999999999999999999999999999999988 79999999999999999
Q ss_pred hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHH
Q 026999 79 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVL 158 (229)
Q Consensus 79 ~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~l 158 (229)
.|+. ++....|+|||+|.+++..| ++++|+++|++.+.+.. .+....+++|+++++||+.+.|.. ++.+||+.+
T Consensus 177 ~~~~-~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~w~~~ 250 (355)
T cd05804 177 TWDC-SSMLRGHNWWHLALFYLERG-DYEAALAIYDTHIAPSA---ESDPALDLLDAASLLWRLELAGHV-DVGDRWEDL 250 (355)
T ss_pred ccCC-CcchhHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcccc---CCChHHHHhhHHHHHHHHHhcCCC-ChHHHHHHH
Confidence 8876 44567899999999999997 99999999999876531 123455567999999999999964 368999999
Q ss_pred HHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhhhh
Q 026999 159 ADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDICLI 226 (229)
Q Consensus 159 a~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (229)
++...+.++++...|+++|.++++...|+.+.+.++|+.++..+..++..........+.++.++..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 99887776778899999999999999999999999999999998775333334456666777777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-09 Score=102.79 Aligned_cols=112 Identities=8% Similarity=-0.048 Sum_probs=95.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++....++++..+|+++.++..+|+++...|++++|++..++|+++||+++.++.. .+|++++|+.++++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999987765 79999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.+ .+|..+... .+++..++..| ++++|++.|++.+..
T Consensus 398 Al~----l~P~~~~~~-~~~~~~~~~~g-~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 398 CLK----LDPTRAAAG-ITKLWITYYHT-GIDDAIRLGDELRSQ 435 (553)
T ss_pred HHh----cCCCChhhH-HHHHHHHHhcc-CHHHHHHHHHHHHHh
Confidence 998 666533222 23444456666 899999999887654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.7e-09 Score=90.98 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=102.5
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
||...++..++++|.++|++.-++..+|+.++..|+.+-|.+..|+||.++|+++..+.. -+|++++|..++++
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFER 128 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999988 69999999999999
Q ss_pred chhhccCCCCcchhh--hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTH--NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H--~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++. .+ ..+.+ -|-++++|.+..| +.+.|.+.|.+.+.-
T Consensus 129 Al~----~P-~Y~~~s~t~eN~G~Cal~~g-q~~~A~~~l~raL~~ 168 (250)
T COG3063 129 ALA----DP-AYGEPSDTLENLGLCALKAG-QFDQAEEYLKRALEL 168 (250)
T ss_pred HHh----CC-CCCCcchhhhhhHHHHhhcC-CchhHHHHHHHHHHh
Confidence 987 33 33333 6677999999997 999999999998876
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.5e-09 Score=84.35 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=88.9
Q ss_pred HHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhcc
Q 026999 8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWS 81 (229)
Q Consensus 8 ~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~ 81 (229)
.+..++++..+|++.+ .+|+++...|+|++|.+.+++++.++|+++.++.. ..|++++|+.+++++..
T Consensus 13 ~~~~~~al~~~p~~~~---~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--- 86 (144)
T PRK15359 13 EDILKQLLSVDPETVY---ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--- 86 (144)
T ss_pred HHHHHHHHHcCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---
Confidence 3567788888887633 57889999999999999999999999999999888 79999999999999998
Q ss_pred CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 82 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 82 ~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|- ....+.++|.++...| ++++|++.|++.|..
T Consensus 87 -l~p~-~~~a~~~lg~~l~~~g-~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 87 -LDAS-HPEPVYQTGVCLKMMG-EPGLAREAFQTAIKM 121 (144)
T ss_pred -cCCC-CcHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 5553 3356678999999997 999999999999876
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-08 Score=96.09 Aligned_cols=176 Identities=11% Similarity=0.054 Sum_probs=119.7
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFK 67 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~---------g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~ 67 (229)
+.++++...++++..+|+++.++..+|.++... +++++|++.+++|++++|+++.++.. .+|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 356889999999999999999998888766533 34899999999999999999998776 799999
Q ss_pred HHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCC
Q 026999 68 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGE 147 (229)
Q Consensus 68 egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~ 147 (229)
+|+..++++.. .+|-.+ -.+.++|..++..| ++++|+..|++.+... +.. ...... +++-+...|
T Consensus 356 ~A~~~~~~Al~----l~P~~~-~a~~~lg~~l~~~G-~~~eAi~~~~~Al~l~--P~~---~~~~~~---~~~~~~~~g- 420 (553)
T PRK12370 356 VGSLLFKQANL----LSPISA-DIKYYYGWNLFMAG-QLEEALQTINECLKLD--PTR---AAAGIT---KLWITYYHT- 420 (553)
T ss_pred HHHHHHHHHHH----hCCCCH-HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC--CCC---hhhHHH---HHHHHHhcc-
Confidence 99999999998 454322 23457899999987 9999999999988762 221 111111 111111222
Q ss_pred cccccccHHHHHHHHHhhhhc--cccchhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 026999 148 LDVFGNRLKVLADCVADQANW--YLECHLDLLILWALANTGEVSKAEDLLKGLK 199 (229)
Q Consensus 148 ~v~vg~rW~~la~~~~~~~~~--~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 199 (229)
+.++-......-... +..+..-.....++...|+.+.+.+.+..+.
T Consensus 421 ------~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 421 ------GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred ------CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 233333333222111 2212222233566778899888888776654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.9e-08 Score=94.22 Aligned_cols=202 Identities=12% Similarity=0.098 Sum_probs=112.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.+....++++..+|+++.++..+|-.+...|++++|++..+++++++|++..++.. .+|++++++..+++
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 458 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666666666666666666666666666666777777777777777777776666544 56777777777777
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc---hhhhhhHHHHHHHHhhcCCccccc
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH---PEVYLNALGLLLRVYVRGELDVFG 152 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~---~~~~~Da~sLLwRL~l~G~~v~vg 152 (229)
+....+. + ...+..++..+...| ++++|++.|++.+.-. +..... ...+++.+..+++. .
T Consensus 459 al~~~P~-~----~~~~~~lg~~~~~~g-~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~---------~ 521 (615)
T TIGR00990 459 CKKNFPE-A----PDVYNYYGELLLDQN-KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQW---------K 521 (615)
T ss_pred HHHhCCC-C----hHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHH---------h
Confidence 6663322 1 123344667777765 7777777777766542 111000 00111222222220 1
Q ss_pred ccHHHHHHHHHhhh-hccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhhh
Q 026999 153 NRLKVLADCVADQA-NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDICL 225 (229)
Q Consensus 153 ~rW~~la~~~~~~~-~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 225 (229)
.++++-...+..-. -++...-.-.+....+...|+.+.+.+.++...+.+... ++ ...+...+++++.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~-~e----~~~a~~~~~a~~~ 590 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE-GE----LVQAISYAEATRT 590 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH-HH----HHHHHHHHHHHHH
Confidence 12333333333211 122222234556778888999988888877766665431 22 5566666666654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.7e-07 Score=73.84 Aligned_cols=114 Identities=15% Similarity=0.214 Sum_probs=87.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.+.+..++++...|.+..++..+|..+...|++++|++..+++++++|+++.+... .+|++++++..+++
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 124 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQ 124 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 777888888888888888888888888888888888888888888888888888765544 68888888888888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....-. .+. ....+..++.+++..| ++++|...|++.+..
T Consensus 125 ~~~~~~--~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 125 AIEDPL--YPQ-PARSLENAGLCALKAG-DFDKAEKYLTRALQI 164 (234)
T ss_pred HHhccc--ccc-chHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 875211 111 2335566888888886 888888888877765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.8e-08 Score=82.17 Aligned_cols=112 Identities=10% Similarity=0.070 Sum_probs=96.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCC--HHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCC--FKEAVQF 72 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr--~~egi~~ 72 (229)
++..++....++++..+|+++....++|..+...|++++|....++|++++|+|+..+.. ..|+ .++++..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 345777888899999999999999999999999999999999999999999999988776 3466 5999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++.. .+|-. .-.+..+|..+++.| +|++|+..|++.+..
T Consensus 133 l~~al~----~dP~~-~~al~~LA~~~~~~g-~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 133 IDKALA----LDANE-VTALMLLASDAFMQA-DYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHH----hCCCC-hhHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 999988 44431 234457999999997 999999999998876
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.6e-08 Score=92.04 Aligned_cols=121 Identities=10% Similarity=0.076 Sum_probs=99.1
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHc
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~ 76 (229)
+...+++.+.|++..+|.|+++++++|+++.-.|+++.|....+||++||||.+-++-. +.|+.++|++.++++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999876655 799999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHH-HHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHH
Q 026999 77 SSTWSSCSSFMYTHNWWHVAL-CYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 136 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL-~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~ 136 (229)
.+ ++|+-..-..=-+-+ .|... ..|+++++|-+.... ..-++++|..
T Consensus 399 lr----LsP~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~ 446 (458)
T PRK11906 399 LQ----LEPRRRKAVVIKECVDMYVPN--PLKNNIKLYYKETES-------ESHRVIIDNI 446 (458)
T ss_pred hc----cCchhhHHHHHHHHHHHHcCC--chhhhHHHHhhcccc-------ccchhhHHHH
Confidence 99 898755443333444 66674 589999999664433 3355677754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.8e-08 Score=99.65 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=101.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.++++...++++...|+ +-++..+|.++.+.|++++|++..++|++++|+++-++.. ..|++++++..++
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48999999999999999996 8889999999999999999999999999999999987776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.. .+|- ....++++|.++...| ++++|++.|++.+..
T Consensus 668 ~AL~----l~P~-~~~a~~nLA~al~~lG-d~~eA~~~l~~Al~l 706 (987)
T PRK09782 668 RAHK----GLPD-DPALIRQLAYVNQRLD-DMAATQHYARLVIDD 706 (987)
T ss_pred HHHH----hCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 9998 4443 2357789999999997 999999999999876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=85.25 Aligned_cols=112 Identities=14% Similarity=0.066 Sum_probs=87.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+...++....+++..+|+++.++..+|..+...|++++|++..++||+++|+++.++.. ..|++++|+..++
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4788888888999999999999999999999999999999999999999999999888776 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.. .+|-.+....|. .+. ... +++++|++.|.+.+..
T Consensus 157 ~al~----~~P~~~~~~~~~-~l~-~~~-~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 157 AFYQ----DDPNDPYRALWL-YLA-ESK-LDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHH----hCCCCHHHHHHH-HHH-Hcc-CCHHHHHHHHHHHHhh
Confidence 9987 333323334343 222 233 4899999999776543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-07 Score=91.03 Aligned_cols=140 Identities=12% Similarity=0.055 Sum_probs=104.0
Q ss_pred CChhH----HHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 2 GRPDL----CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 2 G~~~~----~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
|+.+. ++...++++...|+++.++..+|.++.+.|++++|+...+++++++|+++.+... ..|++++|++
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55553 7888999999999999999999999999999999999999999999999876655 6899999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc----hhhhhhHHHHH--------
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH----PEVYLNALGLL-------- 139 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~----~~~~~Da~sLL-------- 139 (229)
.+++... .+|... ......|..+...| ++++|++.|++.+...-. ..... ...+.++.+..
T Consensus 340 ~l~~al~----~~P~~~-~~~~~~a~al~~~G-~~deA~~~l~~al~~~P~-~~~~~~~ea~~~~~~~~~~~~~~~~~~~ 412 (656)
T PRK15174 340 EFVQLAR----EKGVTS-KWNRYAAAALLQAG-KTSEAESVFEHYIQARAS-HLPQSFEEGLLALDGQISAVNLPPERLD 412 (656)
T ss_pred HHHHHHH----hCccch-HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhChh-hchhhHHHHHHHHHHHHHhcCCccchhh
Confidence 9998887 343322 22223577777886 999999999988766311 11111 12245555555
Q ss_pred HHHhhcCCc
Q 026999 140 LRVYVRGEL 148 (229)
Q Consensus 140 wRL~l~G~~ 148 (229)
|..+|.|-+
T Consensus 413 W~~~~~~~~ 421 (656)
T PRK15174 413 WAWEVAGRQ 421 (656)
T ss_pred HHHHHhccc
Confidence 888888854
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-07 Score=80.75 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=94.4
Q ss_pred CChhHHHHHHHhhCC--CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp--~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.+.+.++++.. ..+.++.++.++|-.+...|+.++|++..++||+++|+|+.+.-. ..|+.+++...+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 667777777777543 346788999999999999999999999999999999999987766 689999999998
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR 145 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~ 145 (229)
+......+. +|. +|+.+|..++.+| ++++|+.+|.+.+... ++ .+..++.-+..|....-.
T Consensus 204 ~~~~~~~~~-~~~----~~~~la~~~~~lg-~~~~Al~~~~~~~~~~--p~---d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 204 KRLLKAAPD-DPD----LWDALAAAYLQLG-RYEEALEYLEKALKLN--PD---DPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHHH-HT-SCC----HCHHHHHHHHHHT--HHHHHHHHHHHHHHS--TT----HHHHHHHHHHHT-----
T ss_pred HHHHHHCcC-HHH----HHHHHHHHhcccc-cccccccccccccccc--cc---cccccccccccccccccc
Confidence 888776544 332 4567999999997 9999999999977642 22 244455555555544433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.3e-07 Score=69.33 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=89.1
Q ss_pred HHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCC
Q 026999 10 IIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSC 83 (229)
Q Consensus 10 ~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~ 83 (229)
+..+++...|.+..+...+|..+...|++++|.+..++++.++|+++.++.. .+|++++++..+++.....+.
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~- 83 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD- 83 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 4678888899988889899999999999999999999999999999988877 699999999999999874332
Q ss_pred CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 84 SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 84 ~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+ .-.+.++|.+++..| ++++|+..|++.+..
T Consensus 84 ~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 84 D----PRPYFHAAECLLALG-EPESALKALDLAIEI 114 (135)
T ss_pred C----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 1 223346999999997 999999999888776
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-07 Score=91.47 Aligned_cols=153 Identities=10% Similarity=-0.029 Sum_probs=121.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++...|++.-+...++-+|.+.+++++|...++++|..+|+++-+++. ..|+++||++..+
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999999988 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc----hhhhhhHHHHHHHHhhcCCccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH----PEVYLNALGLLLRVYVRGELDV 150 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~----~~~~~Da~sLLwRL~l~G~~v~ 150 (229)
+... .+|- ....+=-+|..+.+.| +.++|...|++.|.... +++-- ..++---+.+|=||+.+|..++
T Consensus 179 ~~~~----~~p~-~~~~~~~~a~~l~~~G-~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (694)
T PRK15179 179 RLSR----QHPE-FENGYVGWAQSLTRRG-ALWRARDVLQAGLDAIG--DGARKLTRRLVDLNADLAALRRLGVEGDGRD 250 (694)
T ss_pred HHHh----cCCC-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhC--cchHHHHHHHHHHHHHHHHHHHcCcccccCC
Confidence 9997 3332 1233334778878887 99999999999988742 22211 1112233678889999988654
Q ss_pred ccccHHHHHHH
Q 026999 151 FGNRLKVLADC 161 (229)
Q Consensus 151 vg~rW~~la~~ 161 (229)
+.-|.-.+-..
T Consensus 251 ~~~~~~~~~~~ 261 (694)
T PRK15179 251 VPVSILVLEKM 261 (694)
T ss_pred CceeeeeHHHH
Confidence 45555444333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-07 Score=88.39 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=94.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.+.++...++++..+|.++..+..+|..+.+.|++++|+...+++|+++|+++.++.. ..|++++|+..++
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4888999999999999999988888889999999999999999999999999999877666 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++....+. . ...+-.+|..++.+| ++++|+..|++.+..
T Consensus 424 kal~l~P~---~--~~~~~~la~~~~~~g-~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 424 KSIDLDPD---F--IFSHIQLGVTQYKEG-SIASSMATFRRCKKN 462 (615)
T ss_pred HHHHcCcc---C--HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 99873322 1 122335888888887 999999999887764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-07 Score=75.13 Aligned_cols=78 Identities=9% Similarity=-0.172 Sum_probs=75.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.+.+.....+++..+|.++.++..+|.++...|+|++|+...++|++++|+++.+++. ..|++++|+..++
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999987 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 117 ~Al~ 120 (144)
T PRK15359 117 TAIK 120 (144)
T ss_pred HHHH
Confidence 9988
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.8e-07 Score=85.24 Aligned_cols=110 Identities=13% Similarity=-0.005 Sum_probs=88.6
Q ss_pred hhHHHHHHHhhC---CCCCCchhHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhCCCChhhHHH------hhCC
Q 026999 4 PDLCFDIIHQVL---PYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHA------HDCC 65 (229)
Q Consensus 4 ~~~~~~~~~ral---p~~~~~~~~~g~~AF~L~e~---------g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr 65 (229)
..+++....|++ |.+|+++-+++++||.+... ....+|.+.++||++++|+|++|+.. +.|+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 356788899999 99999999999999987764 24556889999999999999999988 7999
Q ss_pred HHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 66 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 66 ~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.|+.+++++.. +||-...-. -=.|+.+...| +.++|++..++.++.
T Consensus 354 ~~~a~~~f~rA~~----L~Pn~A~~~-~~~~~~~~~~G-~~~~a~~~i~~alrL 401 (458)
T PRK11906 354 AKVSHILFEQAKI----HSTDIASLY-YYRALVHFHNE-KIEEARICIDKSLQL 401 (458)
T ss_pred hhhHHHHHHHHhh----cCCccHHHH-HHHHHHHHHcC-CHHHHHHHHHHHhcc
Confidence 9999999999988 666433222 22455555555 999999999996655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-06 Score=84.97 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=123.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+-+.+.+.-+|++...|..+.++..+|-+|-+.|+.++|+....+||.++|+.+.++.. ++|.+++|+.+.+.
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999999999999988 89999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcc-ccccc
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELD-VFGNR 154 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v-~vg~r 154 (229)
+..-.+. |-..|+ .+|..|-.+| .+++|+..|...|+- . .. .-||.|= .|..- ..|+.
T Consensus 380 al~v~p~---~aaa~n--NLa~i~kqqg-nl~~Ai~~YkealrI--~-P~------fAda~~N------mGnt~ke~g~v 438 (966)
T KOG4626|consen 380 ALEVFPE---FAAAHN--NLASIYKQQG-NLDDAIMCYKEALRI--K-PT------FADALSN------MGNTYKEMGDV 438 (966)
T ss_pred HHhhChh---hhhhhh--hHHHHHHhcc-cHHHHHHHHHHHHhc--C-ch------HHHHHHh------cchHHHHhhhH
Confidence 9985555 335675 6999988886 999999999999887 1 21 3354432 23210 12333
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHh
Q 026999 155 LKVLADCVADQANWYLECHLDLLILWALA 183 (229)
Q Consensus 155 W~~la~~~~~~~~~~~~~F~d~H~~~al~ 183 (229)
=..+..+-....-.+ .|+|.|.=++..
T Consensus 439 ~~A~q~y~rAI~~nP--t~AeAhsNLasi 465 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINP--TFAEAHSNLASI 465 (966)
T ss_pred HHHHHHHHHHHhcCc--HHHHHHhhHHHH
Confidence 333444433333344 499999876665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.2e-07 Score=79.56 Aligned_cols=111 Identities=9% Similarity=0.060 Sum_probs=93.1
Q ss_pred ChhHHHHHHHhhCC---CCC-CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHH
Q 026999 3 RPDLCFDIIHQVLP---YNQ-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQF 72 (229)
Q Consensus 3 ~~~~~~~~~~ralp---~~~-~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~ 72 (229)
..+.++..+.+++. ..| ..+-.+...|.++...|++++|+...++|++++|+++.++.. ..|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34567778888884 444 346778889999999999999999999999999999998888 79999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++.. .+|- ....|..+|..++..| ++++|++.|++.+..
T Consensus 121 ~~~Al~----l~P~-~~~a~~~lg~~l~~~g-~~~eA~~~~~~al~~ 161 (296)
T PRK11189 121 FDSVLE----LDPT-YNYAYLNRGIALYYGG-RYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHH----hCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 999988 4543 2345567999999987 999999999999876
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-05 Score=71.99 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
++..+|..+...|++++|++..+++++++|.+..+... .+|++++++..+++..
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 34444444444455555555555554444444433333 3444444444444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-06 Score=82.69 Aligned_cols=113 Identities=10% Similarity=0.044 Sum_probs=85.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHH----HHHHHHHHHhhCCCChhhHHH------hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD----AEEAAKKGLKINKHDCWSQHA------HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~----Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi 70 (229)
.|+.+.+.....+++...|+++.++..+|..+.+.|++++ |++..+++++++|+++-++.. .+|++++|+
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3677778888888888888888888888888888888875 788888888888888766666 678888888
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..+++.... +|..+ -.+-+++..+...| ++++|++.|++.+..
T Consensus 305 ~~l~~al~l----~P~~~-~a~~~La~~l~~~G-~~~eA~~~l~~al~~ 347 (656)
T PRK15174 305 PLLQQSLAT----HPDLP-YVRAMYARALRQVG-QYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHh----CCCCH-HHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 888888772 33212 23335788888876 888888888776654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-05 Score=70.97 Aligned_cols=111 Identities=9% Similarity=-0.029 Sum_probs=75.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH----HH-------hhCCHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ----HA-------HDCCFKEAV 70 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~----Ha-------~~Gr~~egi 70 (229)
|+.+.++....+++...|.+..++..++.++...|++++|++..++++..+|++.... +. .+|++++++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 6777777777777776666677777777777777888888877777777777664310 00 467778888
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
..+++..+. +|. ....+..++..+...| ++++|+++|++.+.
T Consensus 201 ~~~~~al~~----~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~ 242 (389)
T PRK11788 201 ALLKKALAA----DPQ-CVRASILLGDLALAQG-DYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHHhH----CcC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence 777777762 222 1234445777777775 77888877776654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-05 Score=83.08 Aligned_cols=113 Identities=11% Similarity=0.129 Sum_probs=95.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH----------------H---
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH----------------A--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H----------------a--- 61 (229)
.|+.+.+....++++..+|+++.++..+|.++...|++++|++..++|++++|++....+ +
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999998763210 1
Q ss_pred -hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 -HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 -~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|++++|+..++++...-+. + ...+-.+|..++..| ++++|++.|++.+..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~-~----~~a~~~Lg~~~~~~g-~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNT-D----SYAVLGLGDVAMARK-DYAAAERYYQQALRM 414 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-C----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 689999999999999884333 1 122336899999987 999999999998876
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-05 Score=71.13 Aligned_cols=204 Identities=11% Similarity=0.048 Sum_probs=119.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh-H----HH-----hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS-Q----HA-----HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA-~----Ha-----~~Gr~~egi 70 (229)
.|+.+.+....++++...|++++++.++|-++.+.|++++|++..++++.+.|.++-. . |. .+|++++++
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 4889999999999999999999999999999999999999999999999999865321 1 12 799999999
Q ss_pred HHHHHchhhccCCCCcchhhhH-HHHHHHHHhCCCCHHHHHHH--HHhhchhhccCCCCCchhhhhhHHHHHHHHhhc-C
Q 026999 71 QFMEECSSTWSSCSSFMYTHNW-WHVALCYLEGHSPMRKVLEI--YDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR-G 146 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~-WHlAL~~l~~gg~~d~Al~~--yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~-G 146 (229)
+.+++....-....+.....+. +++....++ |..+.+.++ ......+.. ++ ......+.. .-|..+. |
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~w~~~~~~~~~~~--~~--~~~~~~~~~--~a~~~~~~~ 278 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELA--GHVDVGDRWEDLADYAAWHF--PD--HGLAFNDLH--AALALAGAG 278 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhc--CCCChHHHHHHHHHHHHhhc--Cc--ccchHHHHH--HHHHHhcCC
Confidence 9999985321111111111132 555555444 243433333 211111210 11 111122322 1122221 1
Q ss_pred CcccccccHHHHHHHHHh---hhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchHHHHH
Q 026999 147 ELDVFGNRLKVLADCVAD---QANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQEL 212 (229)
Q Consensus 147 ~~v~vg~rW~~la~~~~~---~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~ 212 (229)
.....-...+.+...... ........-..+-.+++..+.|+.+.+-++|...-..+...||+..|+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~ 347 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQR 347 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 100011222222222221 111122234445556666788998888888887778887888877665
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-06 Score=82.53 Aligned_cols=113 Identities=10% Similarity=0.018 Sum_probs=98.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+..++....++++...|++..++..+|..+...|++++|++..+++++.+|+++.+... ..|+ .+++.+++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988877 6788 88999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
+.....+. ++ ..+-.++..+...| ++++|+++|++.+...
T Consensus 828 ~~~~~~~~-~~----~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 828 KALKLAPN-IP----AILDTLGWLLVEKG-EADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhhCCC-Cc----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence 99875443 22 23346888889987 9999999999999874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.4e-06 Score=66.71 Aligned_cols=113 Identities=11% Similarity=0.097 Sum_probs=92.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--CChhhHHH------hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK--HDCWSQHA------HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP--~dawA~Ha------~~Gr~~egi~~ 72 (229)
.|+.+.++....+++...|.++.++..++..+...|++++|++..++++...+ ........ ..|++++++..
T Consensus 78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 48899999999999999999999999999999999999999999999998753 33222222 78999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++.....+. + .-.+..+|..+...| ++++|+..+++.+..
T Consensus 158 ~~~~~~~~~~-~----~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 158 LTRALQIDPQ-R----PESLLELAELYYLRG-QYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHhCcC-C----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9999874333 1 124457899999987 999999999887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-05 Score=81.99 Aligned_cols=185 Identities=15% Similarity=0.080 Sum_probs=121.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.++++...++++..+|++++++..+|..+...|++++|++..+++++++|+++-++.+ .+|+.+++++.++
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3889999999999999999999999999999999999999999999999999999877655 4677777777766
Q ss_pred Hchh-hccC------------------------------------CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 75 ECSS-TWSS------------------------------------CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 75 ~~~~-~w~~------------------------------------~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
+... .|+. .++....+ --+|..+++.| ++++|++.|++.+
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~--~~La~~~~~~g-~~~~A~~~y~~al 630 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRID--LTLADWAQQRG-DYAAARAAYQRVL 630 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHH--HHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 5421 1111 00111112 23788888886 9999999998888
Q ss_pred hhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHH
Q 026999 118 WKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLK 196 (229)
Q Consensus 118 ~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~ 196 (229)
... +. .. ++---|-++....- +.++-......-.. .+..+..-...+.++...|+.+.+.++++
T Consensus 631 ~~~--P~---~~----~a~~~la~~~~~~g------~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 631 TRE--PG---NA----DARLGLIEVDIAQG------DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HhC--CC---CH----HHHHHHHHHHHHCC------CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 752 21 12 22222222222211 22222222222111 11222233344667778999999998888
Q ss_pred HHHHHhh
Q 026999 197 GLKSRHS 203 (229)
Q Consensus 197 ~~~~~~~ 203 (229)
.+.....
T Consensus 696 ~al~~~~ 702 (1157)
T PRK11447 696 RLIPQAK 702 (1157)
T ss_pred HHhhhCc
Confidence 8776543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.9e-05 Score=75.49 Aligned_cols=111 Identities=12% Similarity=-0.001 Sum_probs=64.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++...++++...|++..++..+|..+...|++++|++..++++..+|++..+... ..|++++++..+++
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555556666655555555555555555666666666666666666666666554443 46666666666666
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
.... +|. ....+..++..++..| ++++|++.|++.+.
T Consensus 355 ~~~~----~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 391 (899)
T TIGR02917 355 ALGL----DPD-DPAALSLLGEAYLALG-DFEKAAEYLAKATE 391 (899)
T ss_pred HHhc----CCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHh
Confidence 6542 221 1223334666666665 77777777766554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.6e-07 Score=78.26 Aligned_cols=112 Identities=19% Similarity=0.198 Sum_probs=77.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++...|+++.+...+++.+.++|+++++.+..++.....|+|+..+.. ..|++++|+.+++
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 4899999999999999999999999999999999999999999999988888888766555 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+.....+. + +. ...|+|.++...| +.++|++++.+...
T Consensus 239 ~~~~~~p~-d---~~-~~~~~a~~l~~~g-~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPD-D---PL-WLLAYADALEQAG-RKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT-----HH-HHHHHHHHHT------------------
T ss_pred cccccccc-c---cc-ccccccccccccc-cccccccccccccc
Confidence 99884444 2 22 2248999988886 99999999976543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=59.73 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da 56 (229)
.|+.++++...++++..+|+++.++..+|.++...|++++|++..+++++++|+||
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 37788888888888888888888888888888888888888888888888888875
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-05 Score=81.39 Aligned_cols=111 Identities=11% Similarity=-0.017 Sum_probs=81.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.+.....+++...|++......++..+...|++++|+...++|++++|+ +-++.. ..|++++++.++++
T Consensus 556 Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 556 GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777778888887777777777777766677778888888888888888885 544443 68888888888888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+... +|-.+ -.+-.+|.++.+.| ++++|++.|++.+..
T Consensus 635 AL~l----~Pd~~-~a~~nLG~aL~~~G-~~eeAi~~l~~AL~l 672 (987)
T PRK09782 635 ALEL----EPNNS-NYQAALGYALWDSG-DIAQSREMLERAHKG 672 (987)
T ss_pred HHHh----CCCCH-HHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 8773 33211 22236787778876 888888888887765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-05 Score=78.66 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=88.8
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++++...++.|..|....++..+|..+...|++++|++..+++|+++|+++.+... .+|++++++..+++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 788888888888888778888888888888888889999999999999999988877666 68888999988888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....-+. ... +-.+|..+...| ++++|+..|++.+..
T Consensus 109 ~l~~~P~----~~~--~~~la~~l~~~g-~~~~Al~~l~~al~~ 145 (765)
T PRK10049 109 LVSGAPD----KAN--LLALAYVYKRAG-RHWDELRAMTQALPR 145 (765)
T ss_pred HHHhCCC----CHH--HHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 8774332 122 334777777776 888898888888776
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.3e-06 Score=81.59 Aligned_cols=97 Identities=9% Similarity=-0.119 Sum_probs=84.9
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhh
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTH 90 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H 90 (229)
.+|.++-++.++|-++++.|.|++|+..-++++++.|++.-|.+. .+++++||+...++..+.=++ | ...|
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~--~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-S--AREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-C--HHHH
Confidence 367788999999999999999999999999999999999999998 799999999999999883333 2 2334
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 91 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+ ++|.+..+.| +|++|+++|++.+.+
T Consensus 158 ~--~~a~~l~~~g-~~~~A~~~y~~~~~~ 183 (694)
T PRK15179 158 L--LEAKSWDEIG-QSEQADACFERLSRQ 183 (694)
T ss_pred H--HHHHHHHHhc-chHHHHHHHHHHHhc
Confidence 4 6999989997 999999999999975
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=79.01 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=117.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|..+.+..+-.+++..+|+.+-+++.+|-++.+.|.+++|....++||.+.|+.+.|+-. ..|+..+|+.-.++
T Consensus 368 ~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 566777888888888889988999999999999999999999999999999999988887 78999999999999
Q ss_pred chhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 76 CSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 76 ~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
++. .||- --.|+ .+|-.|-+.| ++.+|+.-|++.+-- |.+. .... +-||--|+...-+.|...|
T Consensus 448 AI~----~nPt~AeAhs--NLasi~kDsG-ni~~AI~sY~~aLkl---kPDf--pdA~---cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 448 AIQ----INPTFAEAHS--NLASIYKDSG-NIPEAIQSYRTALKL---KPDF--PDAY---CNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHh----cCcHHHHHHh--hHHHHhhccC-CcHHHHHHHHHHHcc---CCCC--chhh---hHHHHHHHHHhcccchHHH
Confidence 988 6664 33564 5999988886 999999999887754 2332 2112 4466667776555455677
Q ss_pred HHHHHHHHHhhhhc
Q 026999 155 LKVLADCVADQANW 168 (229)
Q Consensus 155 W~~la~~~~~~~~~ 168 (229)
-++|........+.
T Consensus 513 ~~kl~sivrdql~~ 526 (966)
T KOG4626|consen 513 MKKLVSIVRDQLEK 526 (966)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888777766543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-05 Score=67.53 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=86.1
Q ss_pred CCChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--------h-------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--------H------- 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--------~------- 62 (229)
.|+.+.+....++++..+|.++ .++..+|-++...|++++|+...+++++..|+++.+.-+ +
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 3788888888888888887765 466788888999999999999999999999988764222 1
Q ss_pred --hCCHHHHHHHHHHchhhccCCCCcchhhh--------------HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 63 --DCCFKEAVQFMEECSSTWSSCSSFMYTHN--------------WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 63 --~Gr~~egi~~le~~~~~w~~~~~~~~~H~--------------~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.|++++++..+++....++... . .... ..-+|.+|+..| ++++|+..|.+.+..
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p~~~-~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYPNSE-Y-APDAKKRMDYLRNRLAGKELYVARFYLKRG-AYVAAINRFETVVEN 195 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCh-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Confidence 2778888988888887666622 1 1111 124677888886 899999988888753
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.4e-05 Score=61.74 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=86.7
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEA 69 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~eg 69 (229)
|+...+...+++.+..+|+.+ .+.-.+|-.+.+.|++++|.+..+++++-.|++.+.--+ .+|++++|
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA 104 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 566677777788888888774 455567778999999999999999999998887654333 69999999
Q ss_pred HHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 70 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 70 i~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
+..++...+ +++ ..-.+.-.|..++..| ++++|+..|...|
T Consensus 105 l~~L~~~~~-----~~~-~~~~~~~~Gdi~~~~g-~~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQIPD-----EAF-KALAAELLGDIYLAQG-DYDEARAAYQKAL 145 (145)
T ss_pred HHHHHhccC-----cch-HHHHHHHHHHHHHHCC-CHHHHHHHHHHhC
Confidence 999977432 444 4456778999999997 9999999998754
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-05 Score=70.73 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=98.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|++.++...+.|+....|.||-++.-+|.+|.+.|++++|+...++|++|.|+++-.+.. -+|+.+.+...+..
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999988877 59999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.-.=.. ++. ..|| +|+.--..| ++++|.+|.+..+.+
T Consensus 194 a~l~~~a-d~~-v~~N---LAl~~~~~g-~~~~A~~i~~~e~~~ 231 (257)
T COG5010 194 AYLSPAA-DSR-VRQN---LALVVGLQG-DFREAEDIAVQELLS 231 (257)
T ss_pred HHhCCCC-chH-HHHH---HHHHHhhcC-ChHHHHhhccccccc
Confidence 9763333 223 4577 999988886 999999988776555
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.5e-06 Score=78.67 Aligned_cols=93 Identities=15% Similarity=0.060 Sum_probs=77.9
Q ss_pred hHHHHHHHhh--CCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHc
Q 026999 5 DLCFDIIHQV--LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 5 ~~~~~~~~ra--lp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~ 76 (229)
..+.+.++++ +|..+.++.++..+|+.....|++++|+...+||+++||+ +.++-. ++|++++|++.++++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455666664 3457788899999999988999999999999999999994 554444 799999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhC
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEG 102 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~ 102 (229)
.+ .+|..++.+|||-..||-..
T Consensus 480 ~~----L~P~~pt~~~~~~~~f~~~~ 501 (517)
T PRK10153 480 FN----LRPGENTLYWIENLVFQTSV 501 (517)
T ss_pred Hh----cCCCCchHHHHHhccccccH
Confidence 99 89999999999999887544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-05 Score=53.08 Aligned_cols=89 Identities=17% Similarity=0.186 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHH
Q 026999 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 98 (229)
Q Consensus 25 ~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~ 98 (229)
+..+|..+.+.|++++|+...++++.++|++..++.. .+|++++|+..+++.... +|-.. -.++.++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL----DPDNA-KAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcch-hHHHHHHHH
Confidence 4567778888999999999999999999999755544 689999999999998873 32211 356689999
Q ss_pred HHhCCCCHHHHHHHHHhhchh
Q 026999 99 YLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 99 ~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++..| ++++|.+.+...+..
T Consensus 78 ~~~~~-~~~~a~~~~~~~~~~ 97 (100)
T cd00189 78 YYKLG-KYEEALEAYEKALEL 97 (100)
T ss_pred HHHHH-hHHHHHHHHHHHHcc
Confidence 99987 999999999876643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0002 Score=72.27 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=93.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+..++....++++...|.++.+...++..+.+.|++++|....+++++++|+++. +.. .+|++++++..++
T Consensus 62 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 62 LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999998 555 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
+....-+. + ...+ -.++..+...+ +.++|++.+++..
T Consensus 141 ~al~~~P~-~--~~~~--~~la~~l~~~~-~~e~Al~~l~~~~ 177 (765)
T PRK10049 141 QALPRAPQ-T--QQYP--TEYVQALRNNR-LSAPALGAIDDAN 177 (765)
T ss_pred HHHHhCCC-C--HHHH--HHHHHHHHHCC-ChHHHHHHHHhCC
Confidence 99883333 1 1223 35788877765 9999999997544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.2e-05 Score=76.13 Aligned_cols=110 Identities=9% Similarity=-0.037 Sum_probs=88.5
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC--------CHHHHHHHHHHHHhh--CCCChhhHHH------hhCCH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--------QMSDAEEAAKKGLKI--NKHDCWSQHA------HDCCF 66 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g--------~~d~Ae~~a~rAL~L--nP~dawA~Ha------~~Gr~ 66 (229)
+..+++++.++++..+|++++++..+++++.... ++.++.+.+++++++ .|.++.++-+ .+|++
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 3568899999999999999999999999876642 355677888888885 7777744333 79999
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++|.+.++++.. ++|....|+ -+|.++...| ++++|++.|.+.+.-
T Consensus 437 ~~A~~~l~rAl~----L~ps~~a~~--~lG~~~~~~G-~~~eA~~~~~~A~~L 482 (517)
T PRK10153 437 DEAYQAINKAID----LEMSWLNYV--LLGKVYELKG-DNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHH----cCCCHHHHH--HHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 999999999998 776433443 5788888886 999999999998876
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.9e-05 Score=72.85 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=82.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+...+++...+++...|.++.++..+|.++...|+|++|+..+++||.++|+++.++.. ..|++++|+..+++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999988887 79999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLE 101 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~ 101 (229)
+...-+. ....+.|-..+...+.
T Consensus 96 al~l~P~---~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 96 GASLAPG---DSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHH
Confidence 9883222 2245566555554553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.3e-05 Score=70.62 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=97.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChhhHHH------hhCCH--HHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHA------HDCCF--KEAVQF 72 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~--~egi~~ 72 (229)
+++.+++....+++..+|.+.-+....+.+|...| .++++.....++++.||++..++|- ..|+. ++.+++
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 57889999999999999999999999999999998 7899999999999999999888885 45553 678999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++.. .+|- -.|.|.|.+...-..| +++++++.|++.|..
T Consensus 131 ~~kal~----~dpk-Ny~AW~~R~w~l~~l~-~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 131 TRKILS----LDAK-NYHAWSHRQWVLRTLG-GWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHH----hCcc-cHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 999987 4443 4689999998888886 999999999999886
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00032 Score=59.59 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=81.1
Q ss_pred CCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCc
Q 026999 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSF 86 (229)
Q Consensus 16 p~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~ 86 (229)
|..+..+-.+...|-.+...|++++|....++++.++|++++...+ .+|++++|+..+++..+..++ ++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~ 105 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPD 105 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCc
Confidence 4455566778888888999999999999999999999999876544 689999999999999986666 333
Q ss_pred chhhhHHHHHHHHHhC--------CCCHHHHHHHHHhhchh
Q 026999 87 MYTHNWWHVALCYLEG--------HSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 87 ~~~H~~WHlAL~~l~~--------gg~~d~Al~~yd~~i~~ 119 (229)
.+ -.+.-++.+++.. | ++++|++.|++.+..
T Consensus 106 ~~-~a~~~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 106 AD-YAYYLRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRR 144 (235)
T ss_pred hH-HHHHHHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHH
Confidence 21 2344578887765 5 899999999998876
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.7e-05 Score=77.59 Aligned_cols=131 Identities=10% Similarity=0.141 Sum_probs=110.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
+|.+.++...+|++-.+|.+.|++..+|.=+..+.+||.|...+|.||.++|++=.|+-- .+++.+.|.-++++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999999887776 69999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY 143 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~ 143 (229)
+.. .||. -.-+-=|.+-++..+| +.|+|+.+|++.+--. +. .+.-...-+++|+-++
T Consensus 515 A~~----INP~-nsvi~~~~g~~~~~~k-~~d~AL~~~~~A~~ld--~k---n~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 515 AVE----INPS-NSVILCHIGRIQHQLK-RKDKALQLYEKAIHLD--PK---NPLCKYHRASILFSLG 571 (638)
T ss_pred hhc----CCcc-chhHHhhhhHHHHHhh-hhhHHHHHHHHHHhcC--CC---CchhHHHHHHHHHhhc
Confidence 998 6765 3344457788888887 9999999999988763 22 2333667777775443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.9e-05 Score=65.99 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=73.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHH-HHhCC--HHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSL-LELGQ--MSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L-~e~g~--~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
+|+.+.+....++++...|+++.++..+|.++ ...|+ +++|++..+++++++|+++-++.. ..|++++|+.
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 58999999999999999999999999999986 56677 599999999999999999988777 7999999999
Q ss_pred HHHHchhhccC
Q 026999 72 FMEECSSTWSS 82 (229)
Q Consensus 72 ~le~~~~~w~~ 82 (229)
..++..+.-+.
T Consensus 166 ~~~~aL~l~~~ 176 (198)
T PRK10370 166 LWQKVLDLNSP 176 (198)
T ss_pred HHHHHHhhCCC
Confidence 99999874333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0001 Score=60.15 Aligned_cols=111 Identities=11% Similarity=0.073 Sum_probs=78.9
Q ss_pred ChhHHHHHHHhhCCCCCCc--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hhhHHH------hhCCHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQE--DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~--~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---awA~Ha------~~Gr~~egi~ 71 (229)
++.++.+...+.+...+.+ .+.+..+|..+...|++++|+...++|+.+.|+. ++++.. ..|++++++.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456667777776666554 5777888999999999999999999999998874 344444 7999999999
Q ss_pred HHHHchhhccCCCCcchhh-----hHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 72 FMEECSSTWSSCSSFMYTH-----NWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H-----~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
.++++....+. ....| +++.++..+..+| ++++|+..|++.+
T Consensus 94 ~~~~Al~~~~~---~~~~~~~la~i~~~~~~~~~~~g-~~~~A~~~~~~a~ 140 (168)
T CHL00033 94 YYFQALERNPF---LPQALNNMAVICHYRGEQAIEQG-DSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHhCcC---cHHHHHHHHHHHHHhhHHHHHcc-cHHHHHHHHHHHH
Confidence 99999874333 11233 3333333333876 8887777776544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.6e-05 Score=59.74 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=74.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+....+++++.+|.++.++..+|..+...|++++|++..+++++++|+++-.+.. ..|++++|+.+++
T Consensus 30 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 30 QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3788899999999999999999999999999999999999999999999999999877665 7999999999999
Q ss_pred HchhhccC
Q 026999 75 ECSSTWSS 82 (229)
Q Consensus 75 ~~~~~w~~ 82 (229)
+..+..+.
T Consensus 110 ~al~~~p~ 117 (135)
T TIGR02552 110 LAIEICGE 117 (135)
T ss_pred HHHHhccc
Confidence 99884444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.3e-05 Score=55.58 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhC-CHHHHHHHHHHchh
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDC-CFKEAVQFMEECSS 78 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~G-r~~egi~~le~~~~ 78 (229)
++..+..+|-.+...|+|++|+....+|++++|+++.++-. .+| ++++++..+++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777765555 566 57777777777665
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.9e-05 Score=61.43 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 97 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL 97 (229)
.+.-+|+-+.+.|++++|++.++....++|+++-.+-. .+|++++||.....+.. ++|-.| .-..|.|.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~----L~~ddp-~~~~~ag~ 111 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ----IKIDAP-QAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCc-hHHHHHHH
Confidence 44456677899999999999999999999999988777 79999999999999976 333212 33468999
Q ss_pred HHHhCCCCHHHHHHHHHhhchhh
Q 026999 98 CYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 98 ~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
++|..| +.++|.+.|+..|.--
T Consensus 112 c~L~lG-~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACD-NVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcC-CHHHHHHHHHHHHHHh
Confidence 999997 9999999999988873
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00017 Score=53.84 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 94 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH 94 (229)
.+...|-.+.+.|++++|++..++++..+|+++....+ ..|++++++..++......+. +++. .-.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~-~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK-SPKA-PDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC-CCcc-cHHHHH
Confidence 34567777899999999999999999999988543222 689999999999999875554 3222 234567
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|.++...| ++++|+..|++.+..
T Consensus 82 ~~~~~~~~~-~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELG-DKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhC-ChHHHHHHHHHHHHH
Confidence 889999987 999999999998876
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0011 Score=61.84 Aligned_cols=186 Identities=9% Similarity=0.001 Sum_probs=123.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH---H----hhCCHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH---A----HDCCFKEAVQFME 74 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H---a----~~Gr~~egi~~le 74 (229)
||...+++...++....|+....+-..|-+..+.|++++|.+..+++.+..|++.-++. + .+|+++++++.++
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 89999999999998876665555556678899999999999999999999999864322 2 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
...+.-++ + + ...-=++..++..| ++++|++++....... .....+..+.....|.=.+.... ....
T Consensus 178 ~l~~~~P~-~---~-~~l~ll~~~~~~~~-d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~--~~~~ 244 (409)
T TIGR00540 178 KLLEMAPR-H---K-EVLKLAEEAYIRSG-AWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAM--ADEG 244 (409)
T ss_pred HHHHhCCC-C---H-HHHHHHHHHHHHHh-hHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH--HhcC
Confidence 99884444 2 2 22223888889987 9999999997765442 11233333333333322231111 1233
Q ss_pred HHHHHHHHHhhhhc-cccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 155 LKVLADCVADQANW-YLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 155 W~~la~~~~~~~~~-~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
.+.+...|...... ...+=..+.++-.+...|+.+.+.++++..-+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 56666666654321 01122344456678888888888777766554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.7e-05 Score=54.01 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=50.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINK 53 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP 53 (229)
.|+.+.++....+++..+|+++.++..+|.++.+.| ++++|++..++||++||
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 478999999999999999999999999999999999 79999999999999999
|
... |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00028 Score=62.62 Aligned_cols=130 Identities=10% Similarity=0.091 Sum_probs=102.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.||.+..+....+.+-.+|.+.+++..++-.+..+|+|.+|+...+||..++|+|.=++.. ..||++++..-+.
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 3788888888888888899999999999999999999999999999999999999876666 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHH
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 142 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL 142 (229)
++.+-....+ . +.-| ++..++-.| |++.|.+++....... +. ...+.-...|++.+
T Consensus 159 qAl~L~~~~p-~-~~nN---lgms~~L~g-d~~~A~~lll~a~l~~--~a----d~~v~~NLAl~~~~ 214 (257)
T COG5010 159 QALELAPNEP-S-IANN---LGMSLLLRG-DLEDAETLLLPAYLSP--AA----DSRVRQNLALVVGL 214 (257)
T ss_pred HHHHhccCCc-h-hhhh---HHHHHHHcC-CHHHHHHHHHHHHhCC--CC----chHHHHHHHHHHhh
Confidence 9988666633 3 3334 777777766 9999999997766553 11 12244555666543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.6e-05 Score=53.63 Aligned_cols=55 Identities=20% Similarity=0.188 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhcc
Q 026999 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWS 81 (229)
Q Consensus 27 ~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~ 81 (229)
.+|-.+.+.|+|++|++..+++++.+|+++.++.. .+|++++|+.++++.....+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46778999999999999999999999999999988 79999999999999977433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00076 Score=62.87 Aligned_cols=181 Identities=9% Similarity=0.005 Sum_probs=111.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF-~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~l 73 (229)
||.+.++....+. |..++.+.++..++- .-.+.|++++|.+..++|.+.+|++.++... .+|+++++++.+
T Consensus 98 Gd~~~A~k~l~~~-~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 98 GDYQQVEKLMTRN-ADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888777663 333444666656644 5589999999999999999999999876532 799999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhh----hHHHHHHHHhhcCCcc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYL----NALGLLLRVYVRGELD 149 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~----Da~sLLwRL~l~G~~v 149 (229)
+++.+.-++ + + ...-.++..|+..| ++++|++++....... . ....+.- .+...|.+......+.
T Consensus 177 ~~~~~~~P~-~---~-~al~ll~~~~~~~g-dw~~a~~~l~~l~k~~---~--~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 177 DKLLEVAPR-H---P-EVLRLAEQAYIRTG-AWSSLLDILPSMAKAH---V--GDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHhcCCC-C---H-HHHHHHHHHHHHHH-hHHHHHHHHHHHHHcC---C--CCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 999883333 2 2 33345788888887 9999999996655432 1 1122111 2222222221111110
Q ss_pred -cccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 150 -VFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 150 -~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
.....|+.+.....+ + +-.-+-++-++...|+.+.+.++++..-+
T Consensus 246 ~~l~~~w~~lp~~~~~---~---~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 246 EGLKRWWKNQSRKTRH---Q---VALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHhCCHHHhC---C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 112344444433221 1 11223346677788888888877755443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.1e-05 Score=72.76 Aligned_cols=62 Identities=16% Similarity=0.031 Sum_probs=56.5
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh---HHH------hhCCHHHHHHHHHHchh
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS---QHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA---~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.+|+++..+..+|.+|...|+|++|...+++||++||+++.+ +.. .+|+.+||++.+++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999855 333 79999999999999988
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.9e-05 Score=68.15 Aligned_cols=85 Identities=7% Similarity=-0.013 Sum_probs=71.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhC
Q 026999 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG 102 (229)
Q Consensus 29 AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~ 102 (229)
|-.+...|+|++|++.+++||+++|+++-++.. ..|++++|+..+++++. .+|-.+ -.+..+|.+++.+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~----l~P~~~-~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE----LDPSLA-KAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCCH-HHHHHHHHHHHHh
Confidence 445567899999999999999999999877655 79999999999999988 444322 2345689999999
Q ss_pred CCCHHHHHHHHHhhchh
Q 026999 103 HSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 103 gg~~d~Al~~yd~~i~~ 119 (229)
| +|++|+..|++.+..
T Consensus 84 g-~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 E-EYQTAKAALEKGASL 99 (356)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 7 999999999998876
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00056 Score=56.15 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=79.4
Q ss_pred hHHHHHHHhhCCCCC--CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh---hhHHH------hhCCHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 5 ~~~~~~~~ralp~~~--~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da---wA~Ha------~~Gr~~egi~~l 73 (229)
.-|-+.+.+.+|..+ .....+..+|..+...|++++|....++|++++|+.. ++++. ..|++++|+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (172)
T PRK02603 16 TVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYY 95 (172)
T ss_pred HHHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356778888888654 5667788888899999999999999999999988754 34444 789999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCC--------------HHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSP--------------MRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~--------------~d~Al~~yd~~i~~ 119 (229)
+++.+.-+. .... +-.++.++...| + +++|++++.+.+..
T Consensus 96 ~~al~~~p~---~~~~--~~~lg~~~~~~g-~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 96 HQALELNPK---QPSA--LNNIAVIYHKRG-EKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHhCcc---cHHH--HHHHHHHHHHcC-ChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 999883222 1122 236788877765 5 45566666555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.2e-05 Score=55.05 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=55.8
Q ss_pred HhCCHHHHHHHHHHHHhhCCCC--hhhHH--H----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCC
Q 026999 34 ELGQMSDAEEAAKKGLKINKHD--CWSQH--A----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP 105 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~d--awA~H--a----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~ 105 (229)
++|+|++|+..+++.++.+|++ .-.+. + .+|++++++.++++ .+ .+. . . .-..+.+|.+++++| +
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~-~-~--~~~~~l~a~~~~~l~-~ 73 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDP-S-N--PDIHYLLARCLLKLG-K 73 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHH-C-H--HHHHHHHHHHHHHTT--
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCC-C-C--HHHHHHHHHHHHHhC-C
Confidence 4789999999999999999964 32333 2 79999999999998 32 222 1 1 223346899999997 9
Q ss_pred HHHHHHHHHh
Q 026999 106 MRKVLEIYDN 115 (229)
Q Consensus 106 ~d~Al~~yd~ 115 (229)
|++|++.|++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999975
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00018 Score=67.16 Aligned_cols=112 Identities=13% Similarity=0.001 Sum_probs=83.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhH--HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh--hhHHH------hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFI--FGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHA------HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~--~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da--wA~Ha------~~Gr~~egi 70 (229)
.|+.+++.+.+++++...|++... .-+........++.+.+++..+++++.+|+|+ ..+.+ .+|++++|.
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~ 355 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAA 355 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHH
Confidence 378888999999999877766532 13444455556788889999999999999999 66555 689999999
Q ss_pred HHHHH--chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 71 QFMEE--CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 71 ~~le~--~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++. ... .+|-.. .+.|+|..+..+| +.++|.++|.+.+.+
T Consensus 356 ~~le~a~a~~----~~p~~~--~~~~La~ll~~~g-~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 356 DAFKNVAACK----EQLDAN--DLAMAADAFDQAG-DKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHhHHhh----cCCCHH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 99994 444 233212 2458899988886 899999999876655
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.1e-05 Score=49.05 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
.++.++|..+.+.|++++|++..+++|+++|+|+.+++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 467789999999999999999999999999999988764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00016 Score=49.20 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=69.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+...+.....+++...|.++.++..+|..+...|++++|++..++++.++|.+..+... ..|+.+++...++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3788899999999999889888899999999999999999999999999999999866554 6899999999998
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
+..+
T Consensus 93 ~~~~ 96 (100)
T cd00189 93 KALE 96 (100)
T ss_pred HHHc
Confidence 8766
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.1e-05 Score=52.34 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=47.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS 58 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA 58 (229)
++.+.++..+++++..+|+++.++..+|..+...|++++|.+..+++++++|+++-+
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 677888888888888888888888888888888888888888888888888877654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0004 Score=70.91 Aligned_cols=110 Identities=11% Similarity=-0.036 Sum_probs=86.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.++++..++|+++-.+...+.+-.+|-.+...|+|++|++..+++++++|+++-++.. ..|+.++++..++
T Consensus 81 ~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 81 AGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3788899999999994444455555555779999999999999999999999999877766 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHh--CCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLE--GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~--~gg~~d~Al~~yd~~i~~ 119 (229)
+..+ .+|- +.+-+++.++. .+ ++.+|++.|++.+..
T Consensus 161 ~l~~----~dp~----~~~~l~layL~~~~~-~~~~AL~~~ekll~~ 198 (822)
T PRK14574 161 ELAE----RDPT----VQNYMTLSYLNRATD-RNYDALQASSEAVRL 198 (822)
T ss_pred Hhcc----cCcc----hHHHHHHHHHHHhcc-hHHHHHHHHHHHHHh
Confidence 9988 3432 22337777776 33 465699999998877
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=65.85 Aligned_cols=135 Identities=11% Similarity=0.052 Sum_probs=92.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHH
Q 026999 26 GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 98 (229)
Q Consensus 26 g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~ 98 (229)
=+-|=-+++.++|.+|.....+||+|+|+|+ ..+. ..|.++.||.-.+.++. .+|. +.--|==++++
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA-VyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~-yskay~RLG~A 158 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNA-VYYCNRAAAYSKLGEYEDAVKDCESALS----IDPH-YSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHh----cChH-HHHHHHHHHHH
Confidence 3445567889999999999999999999998 4444 78999999999999988 6665 45566779999
Q ss_pred HHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhccccchh
Q 026999 99 YLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 174 (229)
Q Consensus 99 ~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~ 174 (229)
|+.+| +|++|++.|.+.+-- ++++ ..+..=+..+....|-.- .+..+.+=.+++.... .+++....|+
T Consensus 159 ~~~~g-k~~~A~~aykKaLel--dP~N-e~~K~nL~~Ae~~l~e~~---~~~~~~~~~d~~~~ig-~~Pd~~s~~~ 226 (304)
T KOG0553|consen 159 YLALG-KYEEAIEAYKKALEL--DPDN-ESYKSNLKIAEQKLNEPK---SSAQASGSFDMAGLIG-AFPDSRSMFN 226 (304)
T ss_pred HHccC-cHHHHHHHHHhhhcc--CCCc-HHHHHHHHHHHHHhcCCC---cccccccchhhhhhcc-CCccchhhhc
Confidence 99987 999999999888765 3333 234444666666555433 1112334444444433 2345555554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00025 Score=52.90 Aligned_cols=82 Identities=11% Similarity=-0.025 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHhhCCCCCCc---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hhhHHH------hhCCHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHA------HDCCFKE 68 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~---~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---awA~Ha------~~Gr~~e 68 (229)
.|+.+++.....+++..+|++ +.++..+|.++.+.|++++|....++++..+|++ ++++.. ..|+.++
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 94 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEK 94 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHH
Confidence 378899999999999887765 4688889999999999999999999999999997 444444 6899999
Q ss_pred HHHHHHHchhhccC
Q 026999 69 AVQFMEECSSTWSS 82 (229)
Q Consensus 69 gi~~le~~~~~w~~ 82 (229)
++..+++.....+.
T Consensus 95 A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 95 AKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHCcC
Confidence 99999999886555
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0021 Score=61.84 Aligned_cols=112 Identities=13% Similarity=0.200 Sum_probs=91.9
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHc
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~ 76 (229)
++..+......+...+|.++-++.-.|=.+--.++|++|.+-+++|++|+|++++++-- .++++++.....+.+
T Consensus 375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777888888666666666666688999999999999999999998876 799999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
...+++|+- +.+ ..|-.+.+++ +++.|++.||..|.-+
T Consensus 455 kkkFP~~~E---vy~--~fAeiLtDqq-qFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 455 KKKFPNCPE---VYN--LFAEILTDQQ-QFDKAVKQYDKAIELE 492 (606)
T ss_pred HHhCCCCch---HHH--HHHHHHhhHH-hHHHHHHHHHHHHhhc
Confidence 999999773 222 3677778886 9999999999999773
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00056 Score=54.14 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHH
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW 93 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~W 93 (229)
.++...|.++-..|+.++|+...++|++..+.++-..-+ ..|++++++..+++....++.... ..-..=
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~--~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL--NAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--cHHHHH
Confidence 456778899999999999999999999988777643322 799999999999999987766221 222222
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|+.....| ++++|++++-..+.+
T Consensus 80 f~Al~L~~~g-r~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 80 FLALALYNLG-RPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 4888888887 999999999777765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00087 Score=64.01 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=110.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++......+...|+++|+.-+.+=.+.+.|++.+|.+..++++++.|+.+|..-. ..|+++|+|..|.
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 3677888888888888899999999999999999999999999999999999999888777 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
.....-+. .+ -.|==+|-.|-++| +..++...+-....-. + .+-.|..+|-|..=.... + --.
T Consensus 399 ~~~~~~p~----dp-~~w~~LAqay~~~g-~~~~a~~A~AE~~~~~----G-----~~~~A~~~l~~A~~~~~~-~-~~~ 461 (484)
T COG4783 399 RYLFNDPE----DP-NGWDLLAQAYAELG-NRAEALLARAEGYALA----G-----RLEQAIIFLMRASQQVKL-G-FPD 461 (484)
T ss_pred HHhhcCCC----Cc-hHHHHHHHHHHHhC-chHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHHHhccC-C-cHH
Confidence 99873333 12 23334899998987 8999999997766652 1 145677777776544321 0 134
Q ss_pred HHHHHHHH
Q 026999 155 LKVLADCV 162 (229)
Q Consensus 155 W~~la~~~ 162 (229)
|..+-+..
T Consensus 462 ~aR~dari 469 (484)
T COG4783 462 WARADARI 469 (484)
T ss_pred HHHHHHHH
Confidence 55554444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00015 Score=43.31 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
+.++..+|.++.+.|+|++|++..++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567889999999999999999999999999997
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.8e-05 Score=51.69 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=29.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da 56 (229)
|+.+++....++++..+|+++.+...+|.++.+.|++++|++..++.+..+|+++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 4555555555555555555555555555555555555555555555555555543
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0011 Score=59.02 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=78.8
Q ss_pred hhHHHHHHHHH-HHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 22 DFIFGILAFSL-LELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 22 ~~~~g~~AF~L-~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
.-.....|+.+ ...|+|++|...+++.+...|++.++--+ .+|++++|+..++.....++. ++. ..-.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-s~~-~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-SPK-AADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-Ccc-hhHH
Confidence 35566777777 56799999999999999999999764444 699999999999999988887 434 3456
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+..+|..+.++| ++++|+++|++.|..
T Consensus 220 l~klg~~~~~~g-~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKG-DTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 677999999987 999999999988876
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00051 Score=55.99 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHhhCCCCCC---chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~---~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
+|+.+.+.....+++...++ .++++..+|.++...|++++|++..++|++++|..+.++..
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 48899999999999776543 56789999999999999999999999999999999876544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00062 Score=66.91 Aligned_cols=109 Identities=15% Similarity=0.032 Sum_probs=86.2
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh-HHH-----hhCCHHHHHHHHHHc
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS-QHA-----HDCCFKEAVQFMEEC 76 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA-~Ha-----~~Gr~~egi~~le~~ 76 (229)
+++.+..+-..++-.+|.+--+..=+|.++..+++++.||-..++|+++||.+.-- .|. ..|+.++++.+++++
T Consensus 470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 45677888888888888766666566667999999999999999999999999643 343 799999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
.. .+|-- .|--.|.|..++.++ +|++|+..++.-.
T Consensus 550 ~~----ld~kn-~l~~~~~~~il~~~~-~~~eal~~LEeLk 584 (638)
T KOG1126|consen 550 IH----LDPKN-PLCKYHRASILFSLG-RYVEALQELEELK 584 (638)
T ss_pred Hh----cCCCC-chhHHHHHHHHHhhc-chHHHHHHHHHHH
Confidence 76 33321 133357899999997 9999999997643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0095 Score=57.10 Aligned_cols=113 Identities=12% Similarity=0.175 Sum_probs=94.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
++++.+....+|++..+|.+.-+....|-=++|......|.+..|+|+++||.|-=|+-. ..+=+.=++=+.++
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 567888899999999999999999999999999999999999999999999999666655 56667778888888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
+.. |-|.. .-+|=-++-+|..++ +.++|++-|.+.|...
T Consensus 424 A~~----~kPnD-sRlw~aLG~CY~kl~-~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 424 ALE----LKPND-SRLWVALGECYEKLN-RLEEAIKCYKRAILLG 462 (559)
T ss_pred HHh----cCCCc-hHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcc
Confidence 877 55542 356667888888886 8899999998888763
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0027 Score=55.82 Aligned_cols=149 Identities=11% Similarity=0.046 Sum_probs=108.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~ 71 (229)
.|+.+.+.++-++++...|.++-+++.+|.=|+..|+|++|-...++|++. |+-+----+ ..|+++.+..
T Consensus 82 ~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 82 LGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred cCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 488899999999999999999999999999999999999999999999973 443322222 6999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHH--HHHHhhcCCcc
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGL--LLRVYVRGELD 149 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sL--LwRL~l~G~~v 149 (229)
.++++...=++ +.+.- =-+|-.+++.| +|-.|.-.+++.-.+. + ..|.|| .||+.=.=-+.
T Consensus 161 ~l~raL~~dp~---~~~~~--l~~a~~~~~~~-~y~~Ar~~~~~~~~~~----~-------~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 161 YLKRALELDPQ---FPPAL--LELARLHYKAG-DYAPARLYLERYQQRG----G-------AQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHHHHHHhCcC---CChHH--HHHHHHHHhcc-cchHHHHHHHHHHhcc----c-------ccHHHHHHHHHHHHHhccH
Confidence 99999883333 22222 13677788886 9999999998766552 1 244454 45555433333
Q ss_pred cccccHHHHHHHHHhhhh
Q 026999 150 VFGNRLKVLADCVADQAN 167 (229)
Q Consensus 150 ~vg~rW~~la~~~~~~~~ 167 (229)
+...||+......-|.+.
T Consensus 224 ~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 224 AAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHHHHhCCCcH
Confidence 334678777666555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.027 Score=57.83 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=48.0
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhh
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTH 90 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H 90 (229)
..|..+....-.+......|+|+.|....+++++.+|+++-+++. ..|+.++|+..++++.. . .|. ..+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~---p-~n~-~~~ 103 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS---S-MNI-SSR 103 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc---C-CCC-CHH
Confidence 345555455555555556666666666666666666665322112 45666666666666552 1 111 111
Q ss_pred hHHHH--HHHHHhCCCCHHHHHHHHHhhchh
Q 026999 91 NWWHV--ALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHl--AL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
. -+ |..+...| +|++|+++|++.+..
T Consensus 104 ~--llalA~ly~~~g-dyd~Aiely~kaL~~ 131 (822)
T PRK14574 104 G--LASAARAYRNEK-RWDQALALWQSSLKK 131 (822)
T ss_pred H--HHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 1 13 33545554 666666666555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=54.47 Aligned_cols=77 Identities=9% Similarity=-0.110 Sum_probs=68.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++...-+-..-.+|.+.-....+|-++...|+|.+|+....+|+.|+||||.++-. ..|+.+++..-++.
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 778888888888887888877777778888999999999999999999999999988755 79999999999999
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
++.
T Consensus 129 Ai~ 131 (157)
T PRK15363 129 VVR 131 (157)
T ss_pred HHH
Confidence 986
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.061 Score=54.49 Aligned_cols=118 Identities=11% Similarity=0.002 Sum_probs=85.0
Q ss_pred CCChhHHHHHHHhhCCCCC------CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--------hhhHHH-----
Q 026999 1 MGRPDLCFDIIHQVLPYNQ------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--------CWSQHA----- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~------~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d--------awA~Ha----- 61 (229)
.|+.+.++...++++.... ...+.+..+|.++.+.|++++|++..++++++.... .+....
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4888899888888886422 123567778889999999999999999999974321 111111
Q ss_pred -hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 -HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 -~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|++++|.+.+++..+.....++......+.-+|..++..| ++++|.+.+++.+.-
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG-DLDNARRYLNRLENL 641 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 689999999999998765443332222334344788888886 999999999887653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00085 Score=46.09 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=42.5
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
|.+.|+|++|++..++++..+|+++.+... .+|++++|...+++...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 468899999999999999999999988887 79999999999999987
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00098 Score=60.34 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=72.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
+++..+++.=.+++..+|.++-++.+.|-+|.+.|+|+.|.+-++.||.+||+..=++-. -+|++++|++...+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 578889999999999999999999999999999999999999999999999999877777 59999999999999
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
+..
T Consensus 175 aLe 177 (304)
T KOG0553|consen 175 ALE 177 (304)
T ss_pred hhc
Confidence 988
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0073 Score=53.02 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=95.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHH---HHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--hhCC-----------
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIF---GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--HDCC----------- 65 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~---g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--~~Gr----------- 65 (229)
|+.+.+...-+++++.+|..+++. -++|.++-..++|++|...+++.+.+.|+++.+--+ +.|.
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~ 125 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQ 125 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhh
Confidence 788999999999999999877654 789999999999999999999999999999988766 3331
Q ss_pred --------------HHHHHHHHHHchhhccCCCCcch----------hh---hHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 66 --------------FKEAVQFMEECSSTWSSCSSFMY----------TH---NWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 66 --------------~~egi~~le~~~~~w~~~~~~~~----------~H---~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
..+++.-+++-++.+++.. ..+ .+ .-.+.|-+|+..| .|..|+.-++..|.
T Consensus 126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~-ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~-~y~AA~~r~~~v~~ 203 (243)
T PRK10866 126 GFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ-YTTDATKRLVFLKDRLAKYELSVAEYYTKRG-AYVAVVNRVEQMLR 203 (243)
T ss_pred hccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHH
Confidence 3578888888888888733 211 11 2246899999997 99999999999887
Q ss_pred hh
Q 026999 119 KE 120 (229)
Q Consensus 119 ~~ 120 (229)
..
T Consensus 204 ~Y 205 (243)
T PRK10866 204 DY 205 (243)
T ss_pred HC
Confidence 74
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00077 Score=40.53 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
.++..+|..+...|++++|+...++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567889999999999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0066 Score=57.24 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=85.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
++.+.++...++....+|+ +...+|-++..+++-.+|.+...++|..+|+|+-.++. .+|+.+.|+...++
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5667788888887776665 44567777888899999999999999999999888877 79999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHH
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 114 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd 114 (229)
+.. +.|. ..-.|-.||.+|+.+| ++++|+....
T Consensus 260 av~----lsP~-~f~~W~~La~~Yi~~~-d~e~ALlaLN 292 (395)
T PF09295_consen 260 AVE----LSPS-EFETWYQLAECYIQLG-DFENALLALN 292 (395)
T ss_pred HHH----hCch-hHHHHHHHHHHHHhcC-CHHHHHHHHh
Confidence 998 4543 2335667999999997 9999997763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0019 Score=57.58 Aligned_cols=81 Identities=11% Similarity=-0.034 Sum_probs=73.9
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEA 69 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~eg 69 (229)
|+.+++....++++..+|+.. .++..+|..+...|+|++|...+++.+...|+++++-.+ ..|+.+++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 788899999999999898875 599999999999999999999999999999999888887 58999999
Q ss_pred HHHHHHchhhccC
Q 026999 70 VQFMEECSSTWSS 82 (229)
Q Consensus 70 i~~le~~~~~w~~ 82 (229)
+..+++.+..++.
T Consensus 237 ~~~~~~vi~~yP~ 249 (263)
T PRK10803 237 KAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHCcC
Confidence 9999999987766
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=46.20 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=36.3
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 31 ~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
++...++|++|.+..+++++++|+++..+-. .+|++++|+..++++..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4667788888888888888888887766655 57777777777777765
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0051 Score=56.33 Aligned_cols=111 Identities=11% Similarity=0.079 Sum_probs=88.6
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCH--HHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM--SDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~--d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+..++++.+.+++..+|.+..+....++++...|.. +++.....++|+++|+|.+|++- ..|++++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 457899999999999999998999999999888863 77889999999999999888887 7899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhC---CCCH----HHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEG---HSPM----RKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~---gg~~----d~Al~~yd~~i~~ 119 (229)
+.++ .++. -.+.|.|.+.....+ | .+ ++.+..+++.|..
T Consensus 167 ~~I~----~d~~-N~sAW~~R~~vl~~~~~l~-~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 167 QLLE----EDVR-NNSAWNQRYFVITRSPLLG-GLEAMRDSELKYTIDAILA 212 (320)
T ss_pred HHHH----HCCC-chhHHHHHHHHHHhccccc-cccccHHHHHHHHHHHHHh
Confidence 9988 4433 346677777654433 2 23 4677777777765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0061 Score=56.84 Aligned_cols=96 Identities=8% Similarity=0.031 Sum_probs=59.7
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----hhCCHHHHHHHHHHchhhccCCCCcchhhhH
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 92 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~ 92 (229)
..|.++.++..+|-.+...|+.++|++..++++..+| |+-..-. ..|++++++..++++.+.-++ ++. .++
T Consensus 258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~--l~l- 332 (398)
T PRK10747 258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPL--LWS- 332 (398)
T ss_pred HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhccCCChHHHHHHHHHHHhhCCC-CHH--HHH-
Confidence 3566777777777777777777777777777777444 3322222 457777777777777664444 211 121
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 93 WHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 93 WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
-+|-.++..+ ++++|.+.|+..+..
T Consensus 333 -~lgrl~~~~~-~~~~A~~~le~al~~ 357 (398)
T PRK10747 333 -TLGQLLMKHG-EWQEASLAFRAALKQ 357 (398)
T ss_pred -HHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 2555666665 777777777777665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00079 Score=48.73 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=60.4
Q ss_pred CChhHHHHHHHhhCCCCCC--chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~--~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.++...++++...|. ++-....+|-++-..|+|++|.+..++ +.++|.++....- ..|+++||+..+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7888999999999998774 444555589999999999999999999 9999988655544 799999999998
Q ss_pred HHc
Q 026999 74 EEC 76 (229)
Q Consensus 74 e~~ 76 (229)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 863
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=61.72 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=88.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHH-HHHHHhCCH-HHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILA-FSLLELGQM-SDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~A-F~L~e~g~~-d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|...++.-.+.-++...|..+-.+..+| -++.+.-.. ++|.+.++++|.+||.-.=|+-. +.|+.++||..+
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 4445555555555555666666666664 455565544 45999999999999999988887 999999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++....+++++ .|+ |+|.+.-... .++++++.|...++.
T Consensus 462 e~~L~~~~D~~----LH~--~Lgd~~~A~N-e~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 462 EKHLIIFPDVN----LHN--HLGDIMRAQN-EPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhccccH----HHH--HHHHHHHHhh-hHHHHHHHHHHHHhc
Confidence 99999888866 466 8999988886 999999999888876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0055 Score=59.06 Aligned_cols=122 Identities=11% Similarity=0.162 Sum_probs=91.9
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------Ch--hhHHH-----hhCCHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH------DC--WSQHA-----HDCCFKEAVQ 71 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~------da--wA~Ha-----~~Gr~~egi~ 71 (229)
+.+....+.+....|.-+.++...|=+|.-.++++.|++....|++|.|. ++ ..+-+ .++++.+|+.
T Consensus 445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~ 524 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAEN 524 (606)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHH
Confidence 34445555566667888888888999999999999999999999999999 42 22222 7899999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHH
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGL 138 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sL 138 (229)
.++++++-=+.|. --+--+|-+.+.+| +.++|+++|.+.+.-. || -.+++.+.||
T Consensus 525 Ll~KA~e~Dpkce-----~A~~tlaq~~lQ~~-~i~eAielFEksa~lA--rt----~~E~~~a~s~ 579 (606)
T KOG0547|consen 525 LLRKAIELDPKCE-----QAYETLAQFELQRG-KIDEAIELFEKSAQLA--RT----ESEMVHAYSL 579 (606)
T ss_pred HHHHHHccCchHH-----HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH--Hh----HHHHHHHHHH
Confidence 9999998333332 23345899999997 9999999999887663 33 3446666665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=53.54 Aligned_cols=109 Identities=12% Similarity=0.062 Sum_probs=86.5
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEE 75 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~ 75 (229)
+......+..+..+|+|+.---++|=+++.+|+++.|..+.++|+.|.|+++-..-. -+-...++...+.+
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 344555666777799998888899999999999999999999999999999987776 13346788899999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.. ..|.-. ---|-+|..+++.| +|.+|+..+...+..
T Consensus 219 al~----~D~~~i-ral~lLA~~afe~g-~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 219 ALA----LDPANI-RALSLLAFAAFEQG-DYAEAAAAWQMLLDL 256 (287)
T ss_pred HHh----cCCccH-HHHHHHHHHHHHcc-cHHHHHHHHHHHHhc
Confidence 987 333211 22356999999997 999999999887765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0053 Score=59.62 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=87.6
Q ss_pred CCChhHHHHHHHhhCCC--------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-----CCChhhHHH------
Q 026999 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-----KHDCWSQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~--------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln-----P~dawA~Ha------ 61 (229)
.|+++++...+++++.. .|.-+-.+..++-.++-.+++++|+...++++++= ++++-.-+.
T Consensus 296 ~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~ 375 (508)
T KOG1840|consen 296 QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE 375 (508)
T ss_pred cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 38888999998888874 22344677888889999999999999999999864 344222222
Q ss_pred ---hhCCHHHHHHHHHHchhhccCC---CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSC---SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~---~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++|+++||.++.++++..-... ..+...-..||+|..|.+++ ++++|-.+|.+.+.-
T Consensus 376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k-~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK-KYEEAEQLFEEAKDI 438 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc-ccchHHHHHHHHHHH
Confidence 7999999999999996533111 11122345699999999987 999999999876544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.023 Score=55.22 Aligned_cols=189 Identities=15% Similarity=0.114 Sum_probs=118.6
Q ss_pred CChhHHHHHHHhhCCC--------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-------ChhhHHH-----
Q 026999 2 GRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------DCWSQHA----- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~--------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~-------dawA~Ha----- 61 (229)
|.+.++...-++++.. +|..+-++..+|..+...|+|++|+..+++|++|-.. +.-+.+.
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 4556666666666653 4456678999999999999999999999999998655 2222222
Q ss_pred --hhCCHHHHHHHHHHchhhcc----CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc---hhhh
Q 026999 62 --HDCCFKEAVQFMEECSSTWS----SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH---PEVY 132 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~----~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~---~~~~ 132 (229)
..+++++++..+.++..... ..++.. .+..=.+|-.|+..| +|++|.++|.+.|..-.+..+... -..+
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~-a~~~~nl~~l~~~~g-k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL-AKIYANLAELYLKMG-KYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHH-HHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 79999999999998865544 223232 344556999999997 999999999999987543222111 1112
Q ss_pred hhHHHHHHHHhhcCCcccccccHHHHHHHHHhh----hhccc-cchhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 026999 133 LNALGLLLRVYVRGELDVFGNRLKVLADCVADQ----ANWYL-ECHLDLLILWALANTGEVSKAEDLLKGLK 199 (229)
Q Consensus 133 ~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~----~~~~~-~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 199 (229)
-+-++.. .++... ..|..+....... .+++. +-+.=.-.+-++.+.|+.+.+.++...+-
T Consensus 413 ~~la~~~--~~~k~~-----~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 413 NQLAEAY--EELKKY-----EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHH--HHhccc-----chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2222222 222222 2355555443332 22332 22222222446678899988888776655
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.02 Score=53.18 Aligned_cols=181 Identities=17% Similarity=0.093 Sum_probs=128.1
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHc
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~ 76 (229)
.+..++..+...+...|.+--.+-=.|=++++.+++++|.+..+++|.+.|++.-++.. +.|+++=++.+..+-
T Consensus 271 QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 45677888888888899887666667889999999999999999999999999988877 899999999999888
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc--
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR-- 154 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r-- 154 (229)
..-=.. +|- ++=+++||.+-.+ +||=++.-|.+.++..- . .. -++-.-|-|...-| +.||-
T Consensus 351 LqmG~~-spe----Lf~NigLCC~yaq-Q~D~~L~sf~RAlstat---~---~~---~aaDvWYNlg~vaV--~iGD~nl 413 (478)
T KOG1129|consen 351 LQMGAQ-SPE----LFCNIGLCCLYAQ-QIDLVLPSFQRALSTAT---Q---PG---QAADVWYNLGFVAV--TIGDFNL 413 (478)
T ss_pred HHhcCC-ChH----HHhhHHHHHHhhc-chhhhHHHHHHHHhhcc---C---cc---hhhhhhhccceeEE--eccchHH
Confidence 762222 332 2335999999976 99999999998887631 1 10 12223344443333 34641
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 155 LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 155 W~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
=..-......+-.+|....|.+- .--.+.|+.+.++.|+.+-++..
T Consensus 414 A~rcfrlaL~~d~~h~ealnNLa--vL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 414 AKRCFRLALTSDAQHGEALNNLA--VLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHhccCcchHHHHHhHH--HHHhhcCchHHHHHHHHHhhhhC
Confidence 11222222333456777777763 33458899999999998877653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0074 Score=53.92 Aligned_cols=110 Identities=20% Similarity=0.166 Sum_probs=88.8
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHc
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~ 76 (229)
+..-+...+.+.-...|...-+..+.|.-|+-+|.|++|++...+-|+=||+|.-..-- -+|+.-++|.-+-.-
T Consensus 67 ~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~Y 146 (289)
T KOG3060|consen 67 RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEY 146 (289)
T ss_pred chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33444444544444468889999999999999999999999999999999999743333 799999999999988
Q ss_pred hhhccCCCCcchhh-hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 77 SSTWSSCSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 77 ~~~w~~~~~~~~~H-~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+. |+..| .||-+|-.|+..| +|++|.=-|...|-.
T Consensus 147 L~~------F~~D~EAW~eLaeiY~~~~-~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 147 LDK------FMNDQEAWHELAEIYLSEG-DFEKAAFCLEELLLI 183 (289)
T ss_pred HHH------hcCcHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHc
Confidence 883 44455 6777999999997 999999999887755
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.063 Score=51.57 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=96.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh
Q 026999 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 101 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~ 101 (229)
.|....+.|++|+|+...+.-++..|+|+|-.-. ..++.++|++.++++....+. + ..++=.+|-.++.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~----~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-S----PLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-c----cHHHHHHHHHHHh
Confidence 4556678999999999999999999999999988 799999999999999884333 1 2344459999999
Q ss_pred CCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHH
Q 026999 102 GHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWA 181 (229)
Q Consensus 102 ~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~a 181 (229)
.| ++.+|+.+.++.+... +++ .+-|+-|+.......+. .=...=++-.
T Consensus 387 ~g-~~~eai~~L~~~~~~~--p~d--------------------------p~~w~~LAqay~~~g~~---~~a~~A~AE~ 434 (484)
T COG4783 387 GG-KPQEAIRILNRYLFND--PED--------------------------PNGWDLLAQAYAELGNR---AEALLARAEG 434 (484)
T ss_pred cC-ChHHHHHHHHHHhhcC--CCC--------------------------chHHHHHHHHHHHhCch---HHHHHHHHHH
Confidence 86 9999999998877662 221 22344444443331111 1112222334
Q ss_pred HhcCCCcHHHHHHHHHHHHHhhc
Q 026999 182 LANTGEVSKAEDLLKGLKSRHSK 204 (229)
Q Consensus 182 l~~ag~~~~~~~ll~~~~~~~~~ 204 (229)
+..+|+.+.+...+...++..+.
T Consensus 435 ~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 435 YALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HHhCCCHHHHHHHHHHHHHhccC
Confidence 45577777777777777776654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0063 Score=49.87 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=60.6
Q ss_pred CCChhHHHHHHHhhCCCCCC---chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hh-------C
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HD-------C 64 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~---~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~-------G 64 (229)
.|+.+.+....++++...|+ .+.++..+|.++...|++++|++..++|+.++|+++.++-. .. |
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhh
Confidence 48899999999999865443 35788899999999999999999999999999999876533 33 4
Q ss_pred CHHHHHHHHHHchh
Q 026999 65 CFKEAVQFMEECSS 78 (229)
Q Consensus 65 r~~egi~~le~~~~ 78 (229)
+.++++...+++.+
T Consensus 128 ~~~~A~~~~~~A~~ 141 (172)
T PRK02603 128 DQDEAEALFDKAAE 141 (172)
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555555544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.014 Score=59.92 Aligned_cols=124 Identities=17% Similarity=0.188 Sum_probs=90.6
Q ss_pred HhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 026999 34 ELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d 107 (229)
+.+.+++|.+.+.++|..+|.|.||-.- ..|++.+|++.+.+..+.|+.+. .+++ ++|.+|++.| +|-
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~---dv~l--Nlah~~~e~~-qy~ 697 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE---DVWL--NLAHCYVEQG-QYR 697 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC---ceee--eHHHHHHHHH-HHH
Confidence 4678899999999999999999998766 89999999999999999998644 2332 5999999997 999
Q ss_pred HHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHh----hhhccccchhhH
Q 026999 108 KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVAD----QANWYLECHLDL 176 (229)
Q Consensus 108 ~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~----~~~~~~~~F~d~ 176 (229)
.|+..|.+.+..-..++ -++-...|-|--.+- ++|++--+...+ .+.++..-||=.
T Consensus 698 ~AIqmYe~~lkkf~~~~-------~~~vl~~Lara~y~~------~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKN-------RSEVLHYLARAWYEA------GKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHhcccC-------CHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 99999999998754222 234445555554442 235554444433 244556566543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.011 Score=59.40 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=93.7
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH--HH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ--FM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~--~l 73 (229)
|..++++-.+..+--.+|..++.+.+.|-.++..|...+|.+...-||.+||+++-++++ ..|+..=+.. ++
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 455677777777777788999999999999999999999999999999999999999999 6777666665 88
Q ss_pred HHchhhccCCCCcchhhhHH-HHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 74 EECSSTWSSCSSFMYTHNWW-HVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~W-HlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
..+.+ ..|. .|=|| -+|-.+..+| +.++|.+-|+..+.-+
T Consensus 744 ~dalr----~dp~--n~eaW~~LG~v~k~~G-d~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 744 SDALR----LDPL--NHEAWYYLGEVFKKLG-DSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHh----hCCC--CHHHHHHHHHHHHHcc-chHHHHHHHHHHHhhc
Confidence 88887 5553 56444 5788877786 9999999999998873
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.01 Score=46.97 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCChhHHHHHHHhhCCCCCC---chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh--HHH-------hhCCHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS--QHA-------HDCCFKE 68 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~---~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA--~Ha-------~~Gr~~e 68 (229)
+|+.+++...-++++..... -..+.-.+|.++...|++++|+...++++.-.|+|.|. +.. ..||++|
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE 93 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence 58999999999999986332 24577789999999999999999999999999997662 222 6899999
Q ss_pred HHHHHHHchh
Q 026999 69 AVQFMEECSS 78 (229)
Q Consensus 69 gi~~le~~~~ 78 (229)
|++++..+.-
T Consensus 94 Al~~~l~~la 103 (120)
T PF12688_consen 94 ALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.073 Score=53.96 Aligned_cols=118 Identities=11% Similarity=-0.023 Sum_probs=84.3
Q ss_pred CCChhHHHHHHHhhCCCCCC-c----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------hhHHH------hh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ-E----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHA------HD 63 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~-~----~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da------wA~Ha------~~ 63 (229)
.|+.+.++...++++...+. + ..+...+|.++...|++++|+...++++++.+... ++... .+
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 47888999999888764332 2 24667888899999999999999999998755432 22211 69
Q ss_pred CCHHHHHHHHHHchhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~---~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|...++++...-...+. ......++-+|..++..| ++++|.+.+++.+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~ 602 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEV 602 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHh
Confidence 9999999999888654332210 111223445787888886 999999999887664
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=56.74 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=69.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcch--hhhHHHHHHHH
Q 026999 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMY--THNWWHVALCY 99 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~--~H~~WHlAL~~ 99 (229)
+|.=+..++.+..|++...+|++++|+||...|- ..+.+.+|+.+++.+...=...++--+ .-.+=.+++.+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 4444666889999999999999999999999999 588999999999998622111111111 01222488888
Q ss_pred HhCCCCHHHHHHHHHhhchh
Q 026999 100 LEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 100 l~~gg~~d~Al~~yd~~i~~ 119 (229)
-.++ .|++|+.-|.+.+..
T Consensus 466 Rkl~-~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 466 RKLN-KYEEAIDYYQKALLL 484 (611)
T ss_pred HHHh-hHHHHHHHHHHHHHc
Confidence 8887 999999999999887
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.079 Score=53.93 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=17.9
Q ss_pred HHHHhcCCCcHHHHHHHHHHH
Q 026999 179 LWALANTGEVSKAEDLLKGLK 199 (229)
Q Consensus 179 ~~al~~ag~~~~~~~ll~~~~ 199 (229)
+-+++++|+.+++.++++.|.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCC
Confidence 567899999999999998873
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.13 Score=54.23 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=10.6
Q ss_pred HHHhcCCCcHHHHHHHHHHHH
Q 026999 180 WALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 180 ~al~~ag~~~~~~~ll~~~~~ 200 (229)
-+++..|+.+.+.+++..|+.
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 344455555555555555543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.057 Score=53.74 Aligned_cols=109 Identities=9% Similarity=-0.044 Sum_probs=58.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~--LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.++....+..+ .+...++.+.-++..+|++++|.++.++-.+ +.|+. ....+ ..|+.++|....
T Consensus 273 g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ-FTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhccchHHHHHHH
Confidence 555666665555432 3445556666667777777777777766654 33432 23333 466666666666
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+...+.--..+ ...+=-+-..|...| ++++|.++|++...+
T Consensus 349 ~~m~~~g~~~d----~~~~~~Li~~y~k~G-~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 349 AGLIRTGFPLD----IVANTALVDLYSKWG-RMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHhCCCCC----eeehHHHHHHHHHCC-CHHHHHHHHHhCCCC
Confidence 66554211111 111113444555554 666666666655443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=59.29 Aligned_cols=107 Identities=14% Similarity=0.255 Sum_probs=86.5
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-CChhhHHH------hhCCHHHHHHHHHHch
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK-HDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP-~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
...+...++++..+|.|+.+...+|.=+.+.++.+.|...++++|++|| .++-++|- -++|+.+|+...+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999955 45777777 6999999999999999
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
..|.. | +--.|.-=|+-+. .+ |.++++..+...+
T Consensus 541 ~E~~~-N-~~l~~~~~~i~~~---~~-~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 541 EEFGD-N-HVLMDGKIHIELT---FN-DREEALDTCIHKL 574 (799)
T ss_pred HHhhh-h-hhhchhhhhhhhh---cc-cHHHHHHHHHHHH
Confidence 99988 3 3233432244443 44 7788887765544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.21 Score=52.78 Aligned_cols=196 Identities=15% Similarity=0.105 Sum_probs=101.6
Q ss_pred CChhHHHHHHHhhCCC---CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCChhhHHH------hhCCHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPY---NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-KHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 2 G~~~~~~~~~~ralp~---~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln-P~dawA~Ha------~~Gr~~egi~ 71 (229)
|+.+.+++...+.... ...+.+.++.+--++..+|++++|+++.++..+.+ +.+.-...+ ..|++++|+.
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 4555555555555321 12234455555556677777777777777777665 223333333 5677777777
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhh----------hhHHHHHHH
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY----------LNALGLLLR 141 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~----------~Da~sLLwR 141 (229)
.+++....= ..|- ...|=.+-..+...| ++++|+++++..+..... .+...+..+ -+|..++-.
T Consensus 636 lf~eM~~~G--v~PD--~~TynsLI~a~~k~G-~~eeA~~l~~eM~k~G~~-pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 636 IYDDMKKKG--VKPD--EVFFSALVDVAGHAG-DLDKAFEILQDARKQGIK-LGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHcC--CCCC--HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777665411 1111 112223444445554 777777777776655331 111122222 234445555
Q ss_pred HhhcCCcccccccHHHHHHHHHhh--hhccccchhhH-------------HHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 026999 142 VYVRGELDVFGNRLKVLADCVADQ--ANWYLECHLDL-------------LILWALANTGEVSKAEDLLKGLKSRHSK 204 (229)
Q Consensus 142 L~l~G~~v~vg~rW~~la~~~~~~--~~~~~~~F~d~-------------H~~~al~~ag~~~~~~~ll~~~~~~~~~ 204 (229)
+.-.|+..++ .-|..|....... .+.-...|..+ -.+-+++..|+.+.+.+++..+.+..-.
T Consensus 710 M~~~g~~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 710 IKSIKLRPTV-STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHcCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 5545553221 2355544444221 11111111111 1245788899999999999999876544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.099 Score=52.03 Aligned_cols=185 Identities=16% Similarity=0.067 Sum_probs=96.5
Q ss_pred ChhHHHHHHHhhCCC-CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPY-NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 3 ~~~~~~~~~~ralp~-~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
+.+.+....+..+.. .+.+..++..+--++..+|++++|++..++..+ | |...+.+ ..|+.++|++.+++
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444433332 244555566666667777777777777776543 2 3444444 67888888888877
Q ss_pred chhhccCCCCcchhhhHH-HHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhh----------hhHHHHHHHHhh
Q 026999 76 CSSTWSSCSSFMYTHNWW-HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY----------LNALGLLLRVYV 144 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~W-HlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~----------~Da~sLLwRL~l 144 (229)
.... + ..|....+ .+--++...| ++++++++|+........+.+...+.-+ -+|..++=+
T Consensus 417 M~~~----g-~~Pd~~T~~~ll~a~~~~g-~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~--- 487 (697)
T PLN03081 417 MIAE----G-VAPNHVTFLAVLSACRYSG-LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR--- 487 (697)
T ss_pred HHHh----C-CCCCHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH---
Confidence 6541 2 12222222 2333334444 7888888887665421111111122222 233343322
Q ss_pred cCCcccccccHHHHHHHHHhhh----------------hccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 145 RGELDVFGNRLKVLADCVADQA----------------NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 145 ~G~~v~vg~rW~~la~~~~~~~----------------~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
.+...+ ..-|..|......+. ++....+ .-.+-.++.+|+.+.+.++++.|++..
T Consensus 488 ~~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y--~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 488 APFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY--VVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred CCCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch--HHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 122111 234666665553321 1111122 222446889999999999999999875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.019 Score=56.29 Aligned_cols=171 Identities=15% Similarity=0.094 Sum_probs=79.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----hhCCHHHHHHHHHHc
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----HDCCFKEAVQFMEEC 76 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~~Gr~~egi~~le~~ 76 (229)
|+++++...+.+++...|++..+.-+.=.++...+.|++|.+..++=..+.-++..-.|- ..++.+|++.-++.+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~ 105 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGL 105 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcc
Confidence 344555555555555555555555555555555555555554444333333333322222 355555555555544
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHH
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLK 156 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~ 156 (229)
.+ ++++ .-|+ -|-..+.+| +|++++++|. ++.. ++.....+.. -++|+-+--.. +++ |.
T Consensus 106 ~~----~~~~-ll~L---~AQvlYrl~-~ydealdiY~-~L~k----n~~dd~d~~~-r~nl~a~~a~l-----~~~-~~ 164 (652)
T KOG2376|consen 106 DR----LDDK-LLEL---RAQVLYRLE-RYDEALDIYQ-HLAK----NNSDDQDEER-RANLLAVAAAL-----QVQ-LL 164 (652)
T ss_pred cc----cchH-HHHH---HHHHHHHHh-hHHHHHHHHH-HHHh----cCCchHHHHH-HHHHHHHHHhh-----hHH-HH
Confidence 43 3322 2344 455555554 6666666663 2322 1111111110 01111111000 011 22
Q ss_pred HHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHH
Q 026999 157 VLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGL 198 (229)
Q Consensus 157 ~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~ 198 (229)
...+... .+.+.+.||.. ..++..|+...+.++|+.-
T Consensus 165 q~v~~v~--e~syel~yN~A---c~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 165 QSVPEVP--EDSYELLYNTA---CILIENGKYNQAIELLEKA 201 (652)
T ss_pred HhccCCC--cchHHHHHHHH---HHHHhcccHHHHHHHHHHH
Confidence 2221111 23566677765 4777889998888888876
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0029 Score=44.75 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=47.5
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHHhhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
-...+..+|.++.+.|+|++|+...++|+.+....+ + .++. ....+..+|.++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---------------------~----~~~~-~a~~~~~lg~~~~ 57 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG---------------------D----DHPD-TANTLNNLGECYY 57 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---------------------T----HHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC---------------------C----CCHH-HHHHHHHHHHHHH
Confidence 345778889999999999999999998887621111 0 0111 1334445777777
Q ss_pred hCCCCHHHHHHHHHhhchh
Q 026999 101 EGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~ 119 (229)
..| ++++|++.|++.+.-
T Consensus 58 ~~g-~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 58 RLG-DYEEALEYYQKALDI 75 (78)
T ss_dssp HTT-HHHHHHHHHHHHHHH
T ss_pred HcC-CHHHHHHHHHHHHhh
Confidence 776 788888888776653
|
... |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.031 Score=54.49 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=92.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh--hHHH----hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW--SQHA----HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw--A~Ha----~~Gr~~egi~~le 74 (229)
+|+...++..|.+++.+.|..+-++-+.|=+|-..|++.+|-+..+.|-.|++.|-+ .-.+ ..|+.++|...+.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999964 3444 7999999999998
Q ss_pred Hchhhc-cCCCCcchhh-hHHH--HHHHHHhCCCCHHHHHHHHHhhc
Q 026999 75 ECSSTW-SSCSSFMYTH-NWWH--VALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 75 ~~~~~w-~~~~~~~~~H-~~WH--lAL~~l~~gg~~d~Al~~yd~~i 117 (229)
...+.= +..++..-.- +|.. .|.+|+..| ++-.|++.|....
T Consensus 287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~-~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQG-DYGLALKRFHAVL 332 (517)
T ss_pred hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 886522 1111111122 4444 578888886 9999999885433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.12 Score=51.38 Aligned_cols=190 Identities=14% Similarity=0.138 Sum_probs=108.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---hhCCHHHHHHHHHHch
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---HDCCFKEAVQFMEECS 77 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---~~Gr~~egi~~le~~~ 77 (229)
||+.+.+.+.|.+.+.-++..+.---++|...-...+|++|++..+.||.+.|||--.+-- -|-+...=-.+++.+.
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 5777788888888877666554444455555666778888888888888888887655443 1111111112223333
Q ss_pred hhccCCCCcchhh-hHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHH
Q 026999 78 STWSSCSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLK 156 (229)
Q Consensus 78 ~~w~~~~~~~~~H-~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~ 156 (229)
.-|+. .| ..| +|-=.|..+...| +|..|+.+.+..+... ..++...++-=.-++|+|-...-.. .+-+
T Consensus 134 ~LLql-~~--~~ra~w~~~Avs~~L~g-~y~~A~~il~ef~~t~---~~~~s~~~~e~se~~Ly~n~i~~E~----g~~q 202 (700)
T KOG1156|consen 134 QLLQL-RP--SQRASWIGFAVAQHLLG-EYKMALEILEEFEKTQ---NTSPSKEDYEHSELLLYQNQILIEA----GSLQ 202 (700)
T ss_pred HHHHh-hh--hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHc----ccHH
Confidence 33333 21 234 5555888888886 9999999998877763 1345677788889999997765432 2233
Q ss_pred HHHHHHHhhhhccccchhhHHH-HHHHhcCCCcHHHHHHHHHHHHH
Q 026999 157 VLADCVADQANWYLECHLDLLI-LWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 157 ~la~~~~~~~~~~~~~F~d~H~-~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
...+.....-+.-..-|+-.|. +--+-.-++.+.+..+...+..+
T Consensus 203 ~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 203 KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 3333333222221212222222 22223445556666555555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.062 Score=45.49 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=86.7
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--h--------------
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--H-------------- 62 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--~-------------- 62 (229)
|+...+....++++..+|..+ -+..++|.++-..|+|+.|....++-+...|+++.+--+ +
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~ 98 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILR 98 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchh
Confidence 788888888888887766544 578899999999999999999999999999999987666 1
Q ss_pred ----hCCHHHHHHHHHHchhhccCCCCcch--------------hhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 63 ----DCCFKEAVQFMEECSSTWSSCSSFMY--------------THNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 63 ----~Gr~~egi~~le~~~~~w~~~~~~~~--------------~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
++...+|+..++.-+..+++ +++.. .| -+..|.+|+..| .|..|+..|+..|..-
T Consensus 99 ~~~D~~~~~~A~~~~~~li~~yP~-S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y~~~~-~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 99 SDRDQTSTRKAIEEFEELIKRYPN-SEYAEEAKKRLAELRNRLAEH-ELYIARFYYKRG-KYKAAIIRFQYVIENY 171 (203)
T ss_dssp TT---HHHHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTT--HHHHHHHHHHHHHHS
T ss_pred cccChHHHHHHHHHHHHHHHHCcC-chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc-cHHHHHHHHHHHHHHC
Confidence 12346788888888888888 43422 22 256899999997 9999999999988763
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.21 Score=50.87 Aligned_cols=176 Identities=13% Similarity=0.174 Sum_probs=103.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~--LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.++....+. +.+...++.+--++...|+.++|.+..++..+ +.||.. ..-+ ..|+.+||..++
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHH
Confidence 5555555555554 34556666777788899999999999997776 556653 2222 689999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 153 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~ 153 (229)
++..+.... .|- ..|+ --+...+-..| ++++|.+++++.- . +.+......+++++ .+.|. ++.++
T Consensus 613 ~~M~~~~gi-~P~-~~~y-~~lv~~l~r~G-~~~eA~~~~~~m~---~-~pd~~~~~aLl~ac------~~~~~-~e~~e 677 (857)
T PLN03077 613 HSMEEKYSI-TPN-LKHY-ACVVDLLGRAG-KLTEAYNFINKMP---I-TPDPAVWGALLNAC------RIHRH-VELGE 677 (857)
T ss_pred HHHHHHhCC-CCc-hHHH-HHHHHHHHhCC-CHHHHHHHHHHCC---C-CCCHHHHHHHHHHH------HHcCC-hHHHH
Confidence 888754444 222 2232 22444445555 9999999998751 1 12222233344443 22332 22232
Q ss_pred cHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 154 RLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 154 rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
.+++...+-.++.... =+-..-.++.+|+-+.+.++.+.|++..
T Consensus 678 ---~~a~~l~~l~p~~~~~--y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 678 ---LAAQHIFELDPNSVGY--YILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred ---HHHHHHHhhCCCCcch--HHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 2233333222222211 1112235788999999999999999874
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.014 Score=56.95 Aligned_cols=94 Identities=7% Similarity=0.073 Sum_probs=79.9
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCC-cchhhhH
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNW 92 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~ 92 (229)
.|+-++..+|..+--.|+|++|....+.||..+|+|.--+.- -..|.+|||.-..++.. +-| |.+ .+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR--~R 501 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVR--VR 501 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeee--ee
Confidence 688888888888999999999999999999999999866655 57789999999999987 333 444 44
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 93 WHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 93 WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
-.+|..++-+| .|.||++.|=+.|.-.
T Consensus 502 yNlgIS~mNlG-~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 502 YNLGISCMNLG-AYKEAVKHLLEALSMQ 528 (579)
T ss_pred hhhhhhhhhhh-hHHHHHHHHHHHHHhh
Confidence 47999999997 9999999998887764
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0085 Score=35.70 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
++.++|-.+.+.|++++|.+..+++++++|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56788889999999999999999999999964
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.091 Score=41.78 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=66.0
Q ss_pred HhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCC
Q 026999 34 ELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS 104 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg 104 (229)
..++.+.+.+..++-+.-+|+.+++..+ .+|++++++..++......+. + -+..-...-+|..++..|
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~-~l~~~a~l~LA~~~~~~~- 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-P-ELKPLARLRLARILLQQG- 99 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-H-HHHHHHHHHHHHHHHHcC-
Confidence 5899999999999999999999999887 589999999999999885533 2 223344556899999997
Q ss_pred CHHHHHHHHHh
Q 026999 105 PMRKVLEIYDN 115 (229)
Q Consensus 105 ~~d~Al~~yd~ 115 (229)
+|++|+.+++.
T Consensus 100 ~~d~Al~~L~~ 110 (145)
T PF09976_consen 100 QYDEALATLQQ 110 (145)
T ss_pred CHHHHHHHHHh
Confidence 99999999955
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.047 Score=45.65 Aligned_cols=90 Identities=10% Similarity=-0.017 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 97 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL 97 (229)
...-+|+-+-+.|+|++|+..++--..++|.|+-=+-. .++++++|+....-+.--= ..+|. | + .|.|.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~-p-~--f~agq 113 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYR-P-V--FFTGQ 113 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCC-c-c--chHHH
Confidence 33445566778999999999999999988888653333 8999999999887774311 23444 2 2 37999
Q ss_pred HHHhCCCCHHHHHHHHHhhchh
Q 026999 98 CYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 98 ~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++.+| +.++|+..|...|..
T Consensus 114 C~l~l~-~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQLLMR-KAAKARQCFELVNER 134 (165)
T ss_pred HHHHhC-CHHHHHHHHHHHHhC
Confidence 999997 999999999887774
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.085 Score=43.26 Aligned_cols=95 Identities=12% Similarity=-0.010 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHH
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 96 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlA 96 (229)
-.+-..|.++.|.|+++.|.+.+-+||.+.|..+-+... .+|+.+++++-+.++.+--..- ..-.+|-+=.-+
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg 122 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHH
Confidence 456677889999999999999999999999999988887 7999999999999997632221 133566666788
Q ss_pred HHHHhCCCCHHHHHHHHHhhchh
Q 026999 97 LCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 97 L~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.|-.+| +-|.|..=|...-.-
T Consensus 123 ~lyRl~g-~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 123 LLYRLLG-NDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHhC-chHHHHHhHHHHHHh
Confidence 8887776 889999888665443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.025 Score=54.05 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=50.4
Q ss_pred CCChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKI-NKHD 55 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-nP~d 55 (229)
+|+.++++...++++..+|++. +++..+|.+|...|++++|++..++||++ ||..
T Consensus 88 lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 88 KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 5899999999999999999988 56999999999999999999999999998 4443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.086 Score=54.33 Aligned_cols=116 Identities=8% Similarity=0.136 Sum_probs=88.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHH---HHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIF---GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~---g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
||+...++-..+|++..+|...-++ |.+.+..-+.--|..|.....+|..+||+||-++.- +.|+++....
T Consensus 212 l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 212 LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence 5788899999999999999766444 444443334446777999999999999999988765 7999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++.++..= . +..+..+.+.-+|-+|-.+| +||+|...|-..+..
T Consensus 292 la~~ai~~t-~-~~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 292 LAEHAIKNT-E-NKSIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHHhh-h-hhHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHcc
Confidence 999887622 2 22346676677888888886 999999999776654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.24 Score=48.43 Aligned_cols=137 Identities=16% Similarity=0.032 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHH
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 96 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlA 96 (229)
|++..+|--+-..|++++|.+...+||+.+|+.+--+-. ..|++++|.++|+.+.. +..-.+.-| -=.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~----LD~~DRyiN-sK~a 269 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE----LDLADRYIN-SKCA 269 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----CChhhHHHH-HHHH
Confidence 677777888889999999999999999999999887766 79999999999999987 555555555 2356
Q ss_pred HHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHH---------HHHhhcCCcccccccHHHHHHHHHhhhh
Q 026999 97 LCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL---------LRVYVRGELDVFGNRLKVLADCVADQAN 167 (229)
Q Consensus 97 L~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLL---------wRL~l~G~~v~vg~rW~~la~~~~~~~~ 167 (229)
-+.|..| ++++|.++...-.+.+. .+..++.|-=.+- +|..-.|-. =.|+..|........+
T Consensus 270 Ky~LRa~-~~e~A~~~~~~Ftr~~~-----~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A---Lk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 270 KYLLRAG-RIEEAEKTASLFTREDV-----DPLSNLNDMQCMWFETECAEAYLRQGDYGLA---LKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHHCC-CHHHHHHHHHhhcCCCC-----CcccCHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHhc
Confidence 6667776 99999999966655531 2333444333333 333322221 1577777777766555
Q ss_pred ccccchhhHH
Q 026999 168 WYLECHLDLL 177 (229)
Q Consensus 168 ~~~~~F~d~H 177 (229)
|.. |+|
T Consensus 341 DQf----DFH 346 (517)
T PF12569_consen 341 DQF----DFH 346 (517)
T ss_pred ccc----cHH
Confidence 544 777
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0078 Score=36.94 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=21.5
Q ss_pred HhhCCCCCCchhHHHHHHHHHHHhCCHHHHH
Q 026999 12 HQVLPYNQQEDFIFGILAFSLLELGQMSDAE 42 (229)
Q Consensus 12 ~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae 42 (229)
+|++..+|+++.++..+|-.|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4666667777777777777777777777665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.085 Score=48.82 Aligned_cols=110 Identities=14% Similarity=0.027 Sum_probs=67.6
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFMEE 75 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~le~ 75 (229)
+.+.++..+.|++..+|...-+--++|=+....|+|..|.+.-++.++-||...--+-- ..|++++++.|+.+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45567777777777777777777777777777777777777777777777765322211 57777777777777
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++.......- -. ++-.-.+..| .++|.....+.+.+
T Consensus 275 ~~~~~~g~~~~---l~---l~~lie~~~G-~~~Aq~~l~~Ql~r 311 (389)
T COG2956 275 AMETNTGADAE---LM---LADLIELQEG-IDAAQAYLTRQLRR 311 (389)
T ss_pred HHHccCCccHH---HH---HHHHHHHhhC-hHHHHHHHHHHHhh
Confidence 77744442211 11 2222223333 45666655566655
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.28 Score=48.85 Aligned_cols=153 Identities=17% Similarity=0.135 Sum_probs=100.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHH-HHHHHH
Q 026999 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH-VALCYL 100 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH-lAL~~l 100 (229)
-+.=.-|+++|....+.++.-|.--|..+-.+.- -.|+.+||........+ |. ..+|+-|| +|+.+-
T Consensus 13 ~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr-----~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 13 RALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR-----ND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc-----cC-cccchhHHHHHHHHh
Confidence 3344558999999999999999999988887776 58999999999999888 32 37899999 789888
Q ss_pred hCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHh-hhhccccchhhHHHH
Q 026999 101 EGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVAD-QANWYLECHLDLLIL 179 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~-~~~~~~~~F~d~H~~ 179 (229)
..+ +|++|++.|.+.+.- +|++ .+-+-|.+=|= -+|..... .-+.|..+.+.-.. |..+- .|+-.+
T Consensus 87 ~dK-~Y~eaiKcy~nAl~~--~~dN---~qilrDlslLQ--~QmRd~~~-~~~tr~~LLql~~~~ra~w~--~~Avs~-- 153 (700)
T KOG1156|consen 87 SDK-KYDEAIKCYRNALKI--EKDN---LQILRDLSLLQ--IQMRDYEG-YLETRNQLLQLRPSQRASWI--GFAVAQ-- 153 (700)
T ss_pred hhh-hHHHHHHHHHHHHhc--CCCc---HHHHHHHHHHH--HHHHhhhh-HHHHHHHHHHhhhhhHHHHH--HHHHHH--
Confidence 887 999999999999877 4444 22233444332 33333321 12345554444332 23232 244333
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHh
Q 026999 180 WALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 180 ~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
--.|+...+..+++..++-.
T Consensus 154 ---~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 154 ---HLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred ---HHHHHHHHHHHHHHHHHHhh
Confidence 23455556666666666554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.021 Score=55.68 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=71.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+++++.++.+.+|...|.|.-.-.=+|-+|.-..+..+|..+++|||+|.|+..=+--. -.|.++||+..+-.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999766655 69999999999988
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
++.
T Consensus 524 AL~ 526 (579)
T KOG1125|consen 524 ALS 526 (579)
T ss_pred HHH
Confidence 854
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.47 Score=47.72 Aligned_cols=174 Identities=17% Similarity=0.118 Sum_probs=110.3
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCC-hhhHHH----hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHD-CWSQHA----HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF-~L~e~g~~d~Ae~~a~rAL~LnP~d-awA~Ha----~~Gr~~egi~~le~ 75 (229)
||..++|..+.+++..+|. +.=....|+ ..-|+.+|++|..+..+|....|.- .|---+ .+|..+|++.++++
T Consensus 598 gdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred CCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 7889999999999998886 333445566 3446779999999999999988887 343333 89999999999999
Q ss_pred chhhccCCCCcchhh-hHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 76 CSSTWSSCSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H-~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
+...++. +| +|=-++..+-..+ +.+.|.+.|..-+.. .+ ++.+. -=||-+|+=.-- +-.|
T Consensus 677 ~lk~fp~------f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~--cP-~~ipL------WllLakleEk~~---~~~r 737 (913)
T KOG0495|consen 677 ALKSFPD------FHKLWLMLGQIEEQME-NIEMAREAYLQGTKK--CP-NSIPL------WLLLAKLEEKDG---QLVR 737 (913)
T ss_pred HHHhCCc------hHHHHHHHhHHHHHHH-HHHHHHHHHHhcccc--CC-CCchH------HHHHHHHHHHhc---chhh
Confidence 9996655 33 4445677666665 899999999886655 22 21111 112333332211 1124
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHH
Q 026999 155 LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKG 197 (229)
Q Consensus 155 W~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~ 197 (229)
=..+.+...- ..+..+|.=+-.+=.=.++|..+.++.+++.
T Consensus 738 AR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 738 ARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444433 2333233333333344578888877776653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.012 Score=36.05 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=22.8
Q ss_pred HHHHHhhCCCChhhHHH------hhCCHHHHH
Q 026999 45 AKKGLKINKHDCWSQHA------HDCCFKEAV 70 (229)
Q Consensus 45 a~rAL~LnP~dawA~Ha------~~Gr~~egi 70 (229)
.+|||++||+|+-++.. .+|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 05899999999999998 799999986
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.073 Score=50.28 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=67.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh--hhHHH----hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHA----HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da--wA~Ha----~~Gr~~egi~~le~ 75 (229)
++..++.+.+.+++...|.++.++.+.|=-|...++|+.|.+.+++|+.+.|++- |..=+ ..|++++|+..|..
T Consensus 214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 5667888999999999999999999999999999999999999999999999995 55544 79999999998886
Q ss_pred c
Q 026999 76 C 76 (229)
Q Consensus 76 ~ 76 (229)
+
T Consensus 294 ~ 294 (395)
T PF09295_consen 294 C 294 (395)
T ss_pred C
Confidence 6
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.04 Score=30.10 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
++..+|..+.+.|++++|+...+++++++|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 45678889999999999999999999999974
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.1 Score=51.43 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=75.4
Q ss_pred HhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 026999 34 ELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d 107 (229)
.+|+|++|++.+-+-|.+.|+|..++|. ..+++++++.+++...-.- ..+.| + .|.|.+++.++ ..|
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~-~----fEKAYc~Yrln-k~D 96 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSF-F----FEKAYCEYRLN-KLD 96 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchh-h----HHHHHHHHHcc-cHH
Confidence 4789999999999999999999999999 7999999998888765311 11322 1 68999999997 999
Q ss_pred HHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCc
Q 026999 108 KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGEL 148 (229)
Q Consensus 108 ~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~ 148 (229)
+|++.++ - +++.+ ..-+.=-+..||||+.....
T Consensus 97 ealk~~~-~----~~~~~---~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 97 EALKTLK-G----LDRLD---DKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred HHHHHHh-c----ccccc---hHHHHHHHHHHHHHhhHHHH
Confidence 9999997 1 22221 21233356789999876543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.038 Score=51.96 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.|-.+|+++.-.++|.+|++.+.++|+++|+|+=|+-- ..|+++.|+..++++..
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666655544 45666666666666654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.9 Score=46.70 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=75.8
Q ss_pred hHHHHHHH--HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHH
Q 026999 23 FIFGILAF--SLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 94 (229)
Q Consensus 23 ~~~g~~AF--~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH 94 (229)
-+.++++- .+--.|++++|++.+++.+..+|+++-+.-+ .+|+.++++-+---+.. ++|-.+ =.|=+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH----L~p~d~-e~W~~ 212 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH----LNPKDY-ELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCCh-HHHHH
Confidence 34555544 2233589999999999999999999888777 68888888876666555 555433 57778
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHH
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 140 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLw 140 (229)
++....++| .+++|.-.|.+.|... ++ ...-+..=++|+=
T Consensus 213 ladls~~~~-~i~qA~~cy~rAI~~~--p~---n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 213 LADLSEQLG-NINQARYCYSRAIQAN--PS---NWELIYERSSLYQ 252 (895)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHhcC--Cc---chHHHHHHHHHHH
Confidence 888888886 8999999998888763 22 2333455666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.24 Score=39.04 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=45.8
Q ss_pred CChhHHHHHHHhhCCCCCC--------chh--------------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH
Q 026999 2 GRPDLCFDIIHQVLPYNQQ--------EDF--------------IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~--------~~~--------------~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~ 59 (229)
|+........++++..|.+ ++| ++.-++-.+.+.|++++|+..++++++++|.|-.++
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~ 99 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAY 99 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 5666777777788776532 122 222233345667888888888888888888876555
Q ss_pred HH------hhCCHHHHHHHHHHchh
Q 026999 60 HA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 60 Ha------~~Gr~~egi~~le~~~~ 78 (229)
-. .+|+..++++..++..+
T Consensus 100 ~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 100 RLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 54 46777777766666644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.032 Score=39.29 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=42.5
Q ss_pred CCChhHHHHHHHhhCCC---CC----CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 026999 1 MGRPDLCFDIIHQVLPY---NQ----QEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~---~~----~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln 52 (229)
+|+.+++++..++++.. .+ .-...+..+|.++...|++++|++..++|+++.
T Consensus 18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 47888888888888864 22 235688999999999999999999999999874
|
... |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.18 Score=49.51 Aligned_cols=112 Identities=14% Similarity=0.196 Sum_probs=88.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHH----hhCCCCh-h------hHHH--hhCCHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGL----KINKHDC-W------SQHA--HDCCFKE 68 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL----~LnP~da-w------A~Ha--~~Gr~~e 68 (229)
+....+-....+++...|.||+++.-+|.+--+.+.|.+|....+.+| +.+|.-+ | -=|+ ..++.+|
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 455667778888999999999999999988888999999999999999 3333333 2 2344 8999999
Q ss_pred HHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 69 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 69 gi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
||.+.+++..-=+. ....|- =+|+.|..+| ..|.|++.|.+.++.
T Consensus 474 AI~~~q~aL~l~~k---~~~~~a--sig~iy~llg-nld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK---DASTHA--SIGYIYHLLG-NLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHHcCCC---chhHHH--HHHHHHHHhc-ChHHHHHHHHHHHhc
Confidence 99999999872222 223443 3788888887 999999999999987
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.4 Score=42.78 Aligned_cols=117 Identities=10% Similarity=0.083 Sum_probs=92.1
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----------------
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----------------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----------------- 61 (229)
|+..++.+.-+++...+|..+ -+.-|++|+..-.++|++|+..++|=+.+.|+++.+--+
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~r 127 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTR 127 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcccc
Confidence 677777777777766666544 588999999999999999999999999999999988776
Q ss_pred hhCCHHHHHHHHHHchhhccCCC-------------CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCS-------------SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~-------------~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
-+....+++.-+..-+..|++.. ..+..|. =..|.+|++.| .+..|...++..+...
T Consensus 128 Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E-m~IaryY~kr~-~~~AA~nR~~~v~e~y 197 (254)
T COG4105 128 DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE-MAIARYYLKRG-AYVAAINRFEEVLENY 197 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHhc-ChHHHHHHHHHHHhcc
Confidence 24456788888888888888732 1223443 24899999997 9999999998888763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.18 Score=45.54 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=45.3
Q ss_pred HHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCH-HHHHHHHHHchh
Q 026999 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCF-KEAVQFMEECSS 78 (229)
Q Consensus 11 ~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~-~egi~~le~~~~ 78 (229)
.+......+..+..+...|......|+|++|++..++||+.+|+|+..+-. +.|+. ++.-+++.+-..
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 333333455667778888888888888888888888888888888876666 67877 445566666555
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.15 Score=49.48 Aligned_cols=101 Identities=7% Similarity=0.024 Sum_probs=72.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCChh------hHHHhhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCC
Q 026999 31 SLLELGQMSDAEEAAKKGLKINKHDCW------SQHAHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS 104 (229)
Q Consensus 31 ~L~e~g~~d~Ae~~a~rAL~LnP~daw------A~Ha~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg 104 (229)
...+.|+|+.|...+-.|+.|.|.+-- |-++..|++++++.-..++++ ++|- ..--|--++-.++-+|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~----l~p~-w~kgy~r~Gaa~~~lg- 84 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR----LNPD-WAKGYSRKGAALFGLG- 84 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh----cCCc-hhhHHHHhHHHHHhcc-
Confidence 345789999999999999999999531 122279999999999988876 5543 1233345777888887
Q ss_pred CHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHH
Q 026999 105 PMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL 139 (229)
Q Consensus 105 ~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLL 139 (229)
+|++|+..|..-+.. ++++.....-+.++.+..
T Consensus 85 ~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~ 117 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEK--DPSNKQLKTGLAQAYLED 117 (539)
T ss_pred cHHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHH
Confidence 999999999998876 455544444455666333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.34 Score=43.44 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHH
Q 026999 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 95 (229)
Q Consensus 25 ~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHl 95 (229)
..-.||.+...|+|+.|+..++.=+.-=|++..+-.+ -+|+++++........+.|+.++ --| -..-=+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-KAp-dallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-KAP-DALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-CCh-HHHHHH
Confidence 6788999999999999999999999999999998888 59999999999999999999855 323 222468
Q ss_pred HHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 96 ALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 96 AL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
|.+..++| +.|+|-+.|+..|...
T Consensus 222 g~~~~~l~-~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLG-NTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHHC
Confidence 99999997 9999999999888774
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=94.52 E-value=2.9 Score=43.16 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=97.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh--hhHHH----hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHA----HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da--wA~Ha----~~Gr~~egi~~le 74 (229)
.||.+.+...+..++-.+|..+-++.++|-++++.|+...+-...-.|=-|||+|. |..-+ .+|..++|+-...
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999995 55444 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++. .+|.- --+.|-.+-.|...| ++-+|++-|.+.+.-
T Consensus 232 rAI~----~~p~n-~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 232 RAIQ----ANPSN-WELIYERSSLYQKTG-DLKRAMETFLQLLQL 270 (895)
T ss_pred HHHh----cCCcc-hHHHHHHHHHHHHhC-hHHHHHHHHHHHHhh
Confidence 9988 55542 346678888888887 999999999665543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.39 Score=40.58 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhH
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 92 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~ 92 (229)
+-.+.-.|..+.+.|+|++|.+..++.+..-|+.+++-.+ .+|++++++..+++.++..+..+ ..+ ...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~-~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KAD-YAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THH-HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chh-hHH
Confidence 3455667778889999999999999999999999999998 69999999999999999888844 433 344
Q ss_pred HHHHHHHHhCC----------CCHHHHHHHHHhhchhh
Q 026999 93 WHVALCYLEGH----------SPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 93 WHlAL~~l~~g----------g~~d~Al~~yd~~i~~~ 120 (229)
..+|++++... +...+|+..|...|...
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence 45666655431 13457788887777663
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.19 Score=52.32 Aligned_cols=110 Identities=16% Similarity=0.301 Sum_probs=69.9
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
...++...-|++..++..+-+...+|-.+.+.-++-+|.+.+++|++|+|.|+-+.-+ ..-..+++........
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 3455666677888899999999999999999889999999999999999999766655 3444444444433332
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
+ ..+-+....||=|.+++|++.+ +.-.++..+...+
T Consensus 554 q---ka~a~~~k~nW~~rG~yyLea~-n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 554 Q---KAPAFACKENWVQRGPYYLEAH-NLHGAVCEFQSAL 589 (1238)
T ss_pred h---hchHHHHHhhhhhccccccCcc-chhhHHHHHHHHh
Confidence 2 1111223334444444444443 4444444444433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.15 Score=34.70 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH
Q 026999 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60 (229)
Q Consensus 25 ~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H 60 (229)
+..+|+++--.|+|++|.+..++.|+++|+|.-|.-
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 567899999999999999999999999999987653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.36 Score=43.81 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g---~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
.|+...+...-.+++...|+++..++-+|=+|.... .-.+++++.++||+++|+|+=+.-- ++|++++|+.
T Consensus 169 ~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 169 LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 367788888888888889999988888888776643 4456999999999999999877655 8999999999
Q ss_pred HHHHchhhccC
Q 026999 72 FMEECSSTWSS 82 (229)
Q Consensus 72 ~le~~~~~w~~ 82 (229)
..+.-.+.-+.
T Consensus 249 ~Wq~lL~~lp~ 259 (287)
T COG4235 249 AWQMLLDLLPA 259 (287)
T ss_pred HHHHHHhcCCC
Confidence 99988874433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.12 Score=31.63 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKH 54 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~ 54 (229)
++..+|-++...|+|++|++..+++|++.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3678899999999999999999997766543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.52 Score=47.55 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=101.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
+++..+.+..++.+..+|...-...-+|.+-.+.+++..|-+.+-+.+.++|+++-++.+ ..|+-.++-.-+.+
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 577788888889998888655444455555567789999999999999999999988887 58888999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 144 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l 144 (229)
+.. || .-+--+|-+.-+...+-| .+|+|++.|.+.+.-+..++ ...++.+-+-.+-++..
T Consensus 579 AlK----cn-~~~w~iWENymlvsvdvg-e~eda~~A~~rll~~~~~~~---d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 579 ALK----CN-YQHWQIWENYMLVSVDVG-EFEDAIKAYHRLLDLRKKYK---DDEVLLIIVRTVLEGMT 638 (777)
T ss_pred Hhh----cC-CCCCeeeechhhhhhhcc-cHHHHHHHHHHHHHhhhhcc---cchhhHHHHHHHHhhcc
Confidence 998 77 322227777888888987 99999999988776643222 34445555555555555
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.7 Score=44.43 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=39.8
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----------hhCCHHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----------HDCCFKEAVQFME 74 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----------~~Gr~~egi~~le 74 (229)
..+.+...+....+|+...++.+.|-.+.-.|+.++|.+...+|+.....=.-..|- +++++++|.....
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 344444555555566666666666666666666666666666666333332322332 4666666666555
Q ss_pred Hch
Q 026999 75 ECS 77 (229)
Q Consensus 75 ~~~ 77 (229)
.-.
T Consensus 330 ~L~ 332 (468)
T PF10300_consen 330 RLL 332 (468)
T ss_pred HHH
Confidence 554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.23 Score=42.26 Aligned_cols=75 Identities=20% Similarity=0.114 Sum_probs=50.0
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCChhhHHH----------hh
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHA----------HD 63 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~----------~d~Ae~~a~rAL~LnP~dawA~Ha----------~~ 63 (229)
++.++...+.....+|.|+..+..-|.+|.|..+ +++|+.-.++||.|||+...|+-. .+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 4678888888888899999999999998888643 456888899999999998666544 45
Q ss_pred CCHHHHHHHHHHchh
Q 026999 64 CCFKEAVQFMEECSS 78 (229)
Q Consensus 64 Gr~~egi~~le~~~~ 78 (229)
.+..++-.+.+++..
T Consensus 87 ~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 87 PDTAEAEEYFEKATE 101 (186)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 555555555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.59 Score=44.92 Aligned_cols=113 Identities=15% Similarity=0.198 Sum_probs=83.1
Q ss_pred CChhHHHHHHHhhCCCCCCch-----hHHHHHHHHH----H--HhCCHHHHHHHHHHHHhhCCCChhhHHH------hhC
Q 026999 2 GRPDLCFDIIHQVLPYNQQED-----FIFGILAFSL----L--ELGQMSDAEEAAKKGLKINKHDCWSQHA------HDC 64 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~-----~~~g~~AF~L----~--e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~G 64 (229)
||.+..++...++.....-.+ ..++.|.++. . .....++|++.-.+.++.=|+.++=+-. .+|
T Consensus 202 gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g 281 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKG 281 (468)
T ss_pred CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 788888888888877433211 1233333322 2 3447788999999999999999765544 899
Q ss_pred CHHHHHHHHHHch---hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 65 CFKEAVQFMEECS---STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 65 r~~egi~~le~~~---~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++|++.++++. ..|.+ +..-.+|=++.+|+-+. +|++|.+.|+.-+..
T Consensus 282 ~~~~Ai~~~~~a~~~q~~~~Q----l~~l~~~El~w~~~~~~-~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 282 NLEEAIESFERAIESQSEWKQ----LHHLCYFELAWCHMFQH-DWEEAAEYFLRLLKE 334 (468)
T ss_pred CHHHHHHHHHHhccchhhHHh----HHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHhc
Confidence 9999999999765 44544 23347889999999997 999999999776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.1 Score=41.59 Aligned_cols=112 Identities=15% Similarity=0.119 Sum_probs=87.4
Q ss_pred ChhHHHHHHHhhCCCCCC-----chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQ-----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~-----~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
+...+.+.+++.+.+.+. -+.++--+|-......++++|.....||++-||+..=|--- -+|+++.|++
T Consensus 156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVE 235 (389)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHH
Confidence 456677778877776553 34677778888888899999999999999999999766544 6999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++..+ .||-+-.-+---+.-+|-.+| +.++.+....+.+..
T Consensus 236 ~~e~v~e----Qn~~yl~evl~~L~~~Y~~lg-~~~~~~~fL~~~~~~ 278 (389)
T COG2956 236 ALERVLE----QNPEYLSEVLEMLYECYAQLG-KPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHH----hChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc
Confidence 9999988 455334445556788888887 999999888777665
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.4 Score=42.47 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=67.3
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|-.+-+|--..+++...|.-+-+.+.+|.=|.+.|+||.|-++..--++|+|..-+++-. +-||++-|.+-+.+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 344555666678899999999999999999999999999999999999999999999988 89999999877777
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
.-.
T Consensus 159 fYQ 161 (297)
T COG4785 159 FYQ 161 (297)
T ss_pred HHh
Confidence 655
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.75 Score=47.80 Aligned_cols=110 Identities=13% Similarity=0.026 Sum_probs=71.7
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-------------------hhHHH-
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------------------WSQHA- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da-------------------wA~Ha- 61 (229)
|+.+.+.+.++.++...|+..-++.+.|+.+.+.++++.+-.+ +++.+-|.+. .|+-+
T Consensus 45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~L 122 (906)
T PRK14720 45 NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTL 122 (906)
T ss_pred CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHH
Confidence 5667777777777777777777777777777777777777666 6777666665 33332
Q ss_pred -----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 62 -----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 62 -----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
..|+.+++++.+++..+-.+. |+. .-| ++|.+|-+. +.++|+.+|.+.+...
T Consensus 123 A~~Ydk~g~~~ka~~~yer~L~~D~~-n~~--aLN--n~AY~~ae~--dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 123 AEAYAKLNENKKLKGVWERLVKADRD-NPE--IVK--KLATSYEEE--DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCcc-cHH--HHH--HHHHHHHHh--hHHHHHHHHHHHHHHH
Confidence 347777777777777763322 321 222 577776664 6777777777766654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=1.6 Score=38.26 Aligned_cols=98 Identities=9% Similarity=-0.056 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
.+-.+.-.|..+.+.|+|++|.+..++.+...|+.+++.-+ .+|++++|+...++..+..++.+ ..+ ..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~-~~~-~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-NID-YV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-chH-HH
Confidence 34445566777888999999999999999999999999866 69999999999999999888844 323 22
Q ss_pred HHHHHHHHHhCC-----------------CCHHHHHHHHHhhchhh
Q 026999 92 WWHVALCYLEGH-----------------SPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 92 ~WHlAL~~l~~g-----------------g~~d~Al~~yd~~i~~~ 120 (229)
.-=+|+++...+ ....+|+..+++-|...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y 154 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY 154 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC
Confidence 224565543321 01346778888877763
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.65 Score=37.94 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchh
Q 026999 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 27 ~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~ 78 (229)
--|....+.|+|++|++..++-..-=|..+++--+ .+|++++|++-+++.++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34444445555555555555544445555544444 34555555555555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.1 Score=43.07 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=38.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCChhhHHH----hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--KHDCWSQHA----HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln--P~dawA~Ha----~~Gr~~egi~~le~ 75 (229)
||..++....+++.-.+|..--..-.+|.-|...|+|++=+++..+-+.+. ...+|-+|. +..+++.|+.+.++
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 777777777777777776544333444444444444444444444444433 122344443 34444444444444
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
+++
T Consensus 326 ~I~ 328 (564)
T KOG1174|consen 326 CID 328 (564)
T ss_pred Hhc
Confidence 443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.44 Score=45.43 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=22.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK 53 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP 53 (229)
|+.+.+....-+++..++.+.+++.+-+-.+-.+.+.+.|.....++|.++|
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp 234 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDP 234 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccCh
Confidence 4444444444444444444444444444333333333333333333333333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.25 Score=30.03 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINK 53 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP 53 (229)
..+..+|..+...|++++|++..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 3577899999999999999999999998754
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.34 Score=28.04 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
++..+|.++.+.|++++|.+..++.++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56678889999999999999999999999974
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.61 Score=41.33 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=63.5
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----hhCCHHHHHHHHHHc
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----HDCCFKEAVQFMEEC 76 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~~Gr~~egi~~le~~ 76 (229)
|+++.+.+....+++.+|.+.|++-..|..+-.-|+|.-|..-..+=..-+|+||.-.-. ..=++.+|..-+.+.
T Consensus 113 ~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR 192 (297)
T COG4785 113 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQR 192 (297)
T ss_pred ccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999976655 344566666544443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.73 Score=41.30 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=72.4
Q ss_pred CCChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKE 68 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~e 68 (229)
.||...+.+.....+-.+|+.. -+++-+|=++-..|+|++|...+.+.+.-.|+.++|--+ ..|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3778888888888888888755 477778888999999999999999999999999999877 6899999
Q ss_pred HHHHHHHchhhccCC
Q 026999 69 AVQFMEECSSTWSSC 83 (229)
Q Consensus 69 gi~~le~~~~~w~~~ 83 (229)
|.+.+++....++..
T Consensus 234 A~atl~qv~k~YP~t 248 (262)
T COG1729 234 ACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHHCCCC
Confidence 999999999988773
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.11 E-value=2.4 Score=39.93 Aligned_cols=144 Identities=19% Similarity=0.226 Sum_probs=101.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------------------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------------- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------------- 61 (229)
||+...++.-..||+..-|+..-+--..|-+|..+|++++|+.=+++-|.-+|++.-..-+
T Consensus 85 mGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 85 MGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred hcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 6888888999999999999988888889999999999999999999999999977655544
Q ss_pred --hhCCHHHHHHHHHHchh--hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHH
Q 026999 62 --HDCCFKEAVQFMEECSS--TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALG 137 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~--~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~s 137 (229)
-.|+...+|+++..-.+ -|+. ++ +---|-+|++.| +.-.|+.=. .....+ +++ .....---+.
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda--~l-----~~~Rakc~i~~~-e~k~AI~Dl--k~askL-s~D--nTe~~ykis~ 231 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDA--SL-----RQARAKCYIAEG-EPKKAIHDL--KQASKL-SQD--NTEGHYKISQ 231 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchh--HH-----HHHHHHHHHhcC-cHHHHHHHH--HHHHhc-ccc--chHHHHHHHH
Confidence 37888889998888765 2444 22 223788888886 776666444 333322 222 2233455666
Q ss_pred HHHHHhhcCCcccccccHHHHHHHHH
Q 026999 138 LLLRVYVRGELDVFGNRLKVLADCVA 163 (229)
Q Consensus 138 LLwRL~l~G~~v~vg~rW~~la~~~~ 163 (229)
|||-+. |+.+-..++-+.+.
T Consensus 232 L~Y~vg------d~~~sL~~iRECLK 251 (504)
T KOG0624|consen 232 LLYTVG------DAENSLKEIRECLK 251 (504)
T ss_pred HHHhhh------hHHHHHHHHHHHHc
Confidence 776532 23455666666554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.06 E-value=2.1 Score=34.97 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=51.4
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--hhC
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--HDC 64 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--~~G 64 (229)
|+...+....+.+..-+|..+ .+.-.++.++-.+|+|++|.+.++|=++|+|+++.+--+ +.|
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 667777777777766666433 577789999999999999999999999999999987777 444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.8 Score=42.11 Aligned_cols=107 Identities=17% Similarity=0.266 Sum_probs=76.2
Q ss_pred CChhHHHHHHHhhCCCCCC---chhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~---~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
||..++.+ +.+|+..-++ .+-+...-+.-+++-| ++..|-..+..||.+++.++-|+.. +.|+.+++..
T Consensus 433 ~d~~~aie-ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIE-ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHH-HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 44555543 4556654322 2233333334445555 9999999999999999999988887 8999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 115 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~ 115 (229)
|..++.+.=.+|. --..+.+|-+-.+| +.|+|++.|-+
T Consensus 512 ~ykeal~ndasc~-----ealfniglt~e~~~-~ldeald~f~k 549 (840)
T KOG2003|consen 512 FYKEALNNDASCT-----EALFNIGLTAEALG-NLDEALDCFLK 549 (840)
T ss_pred HHHHHHcCchHHH-----HHHHHhcccHHHhc-CHHHHHHHHHH
Confidence 9999988333322 23346889888887 99999998854
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.31 Score=50.55 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.+++-+++..+|..+..+|++++|.++.+++|+++|+|+-++.. .. +.++|+.+..++..
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555544 23 55555555555533
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.6 Score=42.36 Aligned_cols=109 Identities=12% Similarity=0.025 Sum_probs=56.7
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
...+.++=.|++..+|-|--+-.=+|=+++-.+-.--|.=..+||+++.|||+--+-+ ..++.+|||.-..++.
T Consensus 380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555556666555544333333334444555555555566666666666554444 3556666666555555
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
. ++.. -+-..|-+|-.|-+++ ++++|...|.+.|.
T Consensus 460 ~----~~dt-e~~~l~~LakLye~l~-d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 460 L----LGDT-EGSALVRLAKLYEELK-DLNEAAQYYEKYVE 494 (559)
T ss_pred h----cccc-chHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 4 2321 2233455565555554 55666555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.2 Score=39.57 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=61.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------------hh-CCHHHHHHHHHHchhhccCCCC-cchhhhHHH
Q 026999 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------HD-CCFKEAVQFMEECSSTWSSCSS-FMYTHNWWH 94 (229)
Q Consensus 29 AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------~~-Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WH 94 (229)
+-.+. .+++++|....++|+.+--...----+ .. |++++|+.+.+++..-+...+. ....-..-.
T Consensus 82 a~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 82 ANCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 33443 449999999999999873333221111 45 8999999999999887776553 223346678
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
+|.++..+| +|++|+++|++.+...
T Consensus 161 ~A~l~~~l~-~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 161 AADLYARLG-RYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHTC
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHh
Confidence 999999997 9999999998877653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.2 Score=42.13 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=55.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
+.++..++.++.+||...|.+.=+++--|-++.+.|+|+.|+...++|++++|+|- ++++
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk-a~~~ 329 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK-AARA 329 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH-HHHH
Confidence 45778999999999999999999999999999999999999999999999999994 4444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.81 Score=44.64 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=50.2
Q ss_pred HhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCH
Q 026999 34 ELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPM 106 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~ 106 (229)
..|+|..|.+..-+||..+|+|+-..-. -.|.+.+|++-.+.+++ ++| |..+.+. .|.++..+. +|
T Consensus 370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie----L~p~~~kgy~R--Kg~al~~mk-~y 442 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE----LDPNFIKAYLR--KGAALRAMK-EY 442 (539)
T ss_pred hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCchHHHHHHH--HHHHHHHHH-HH
Confidence 3467777777777777777777655544 56667777766666665 232 3333332 344444554 78
Q ss_pred HHHHHHHHhhchhh
Q 026999 107 RKVLEIYDNHIWKE 120 (229)
Q Consensus 107 d~Al~~yd~~i~~~ 120 (229)
++|++.|...+...
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999888888874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.81 Score=40.61 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=78.0
Q ss_pred ChhHHHHHHHhhCCCCC--C----chhHHHHHHHHHHHh-CCHHHHHHHHHHHHhhCCCChhhHHH------------hh
Q 026999 3 RPDLCFDIIHQVLPYNQ--Q----EDFIFGILAFSLLEL-GQMSDAEEAAKKGLKINKHDCWSQHA------------HD 63 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~--~----~~~~~g~~AF~L~e~-g~~d~Ae~~a~rAL~LnP~dawA~Ha------------~~ 63 (229)
++..+.+...+++..+- + -+..+.-+|=.+++. |++++|.+..++|+++-..+.-...+ ..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 56777788888887532 1 235677778889888 99999999999999985555432222 68
Q ss_pred CCHHHHHHHHHHchhhccCCCCcch--hh-hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSSFMY--TH-NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~~~~--~H-~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|+..+++....-...+ .+. .. .+--..|++|..| |+-.|.+.+++....
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~-l~~~~~~~~~l~a~l~~L~~~-D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENN-LLKYSAKEYFLKAILCHLAMG-DYVAARKALERYCSQ 225 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHC-TTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTT
T ss_pred CCHHHHHHHHHHHHHHhhccc-ccchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 999999999999876443322 222 11 2223677999997 999999999886544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.90 E-value=1.5 Score=41.98 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=80.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHH--HHHHHHHH----------HhCCHHHHHHHHHHHHhhCCCChhhHHH--------
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIF--GILAFSLL----------ELGQMSDAEEAAKKGLKINKHDCWSQHA-------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~--g~~AF~L~----------e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------- 61 (229)
++.+.+...-+++|..+|+..-.- .|..=.|+ .+|.|..|++..-.||.++|++.--..-
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 355666677778888877643222 12211232 3789999999999999999997422221
Q ss_pred --hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 62 --HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
..||.+|||.--+.+.. +++- +.--+---|.+|+.++ ++++|++-|.+.+...
T Consensus 297 ~~rLgrl~eaisdc~~Al~----iD~s-yikall~ra~c~l~le-~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALK----IDSS-YIKALLRRANCHLALE-KWEEAVEDYEKAMQLE 351 (486)
T ss_pred hcccCCchhhhhhhhhhhh----cCHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 68999999999999887 4442 1122223899999997 9999999999988773
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.45 Score=27.74 Aligned_cols=28 Identities=11% Similarity=0.373 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 91 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.|.++|.+++..| ++++|++.|++.+.-
T Consensus 3 ~~~~lg~~~~~~~-~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLG-NYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 3567999999997 999999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.88 Score=41.03 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhC--CHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDC--CFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~G--r~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
+.-....+.-+++...|++|.|++..++.-..+.++.-..-+ .+| .+.++.-++++-....+. ++ ..
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~-t~----~~ 203 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS-TP----KL 203 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS---SH----HH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC-CH----HH
Confidence 445666677778899999999999999999998887655555 455 589999999997765443 22 22
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.=-+|.+++.+| +|++|.+++...+..
T Consensus 204 lng~A~~~l~~~-~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 204 LNGLAVCHLQLG-HYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 225899999997 999999999887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.69 E-value=15 Score=34.77 Aligned_cols=177 Identities=10% Similarity=0.035 Sum_probs=113.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF-~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~l 73 (229)
||+.++...+.|.-.+ .+.|....+.|- +-.+.|++++|-..-.+|=++.|++--++-- -+|+...+..-+
T Consensus 98 G~~~qAEkl~~rnae~-~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEH-GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhc-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 8899999999886554 455555556655 6778999999999999999997777554443 689989998888
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHH--HhhcCCcccc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR--VYVRGELDVF 151 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwR--L~l~G~~v~v 151 (229)
++... .+|..+.-. =-..-+|+..| ++.+++++.++.- |.+.-...+..+-=..-|+ |+=.+.+.+.
T Consensus 177 ~~ll~----~~pr~~~vl-rLa~r~y~~~g-~~~~ll~~l~~L~-----ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 177 DQLLE----MTPRHPEVL-RLALRAYIRLG-AWQALLAILPKLR-----KAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred HHHHH----hCcCChHHH-HHHHHHHHHhc-cHHHHHHHHHHHH-----HccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 88877 344323221 12556788887 9999999995532 2333344455554455555 2212221111
Q ss_pred -c--ccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHH
Q 026999 152 -G--NRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLK 196 (229)
Q Consensus 152 -g--~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~ 196 (229)
| +.|+++.+.....++- -+-++-=+..-|+.+++.+++.
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l------~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPEL------VVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred hHHHHHHHhccHHhhcChhH------HHHHHHHHHHcCChHHHHHHHH
Confidence 3 6888888877753221 2233444556677777666554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.7 Score=37.54 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=74.4
Q ss_pred HHHHhhCCCCCCchh---HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHc
Q 026999 9 DIIHQVLPYNQQEDF---IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 9 ~~~~ralp~~~~~~~---~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~ 76 (229)
..+++..-.++...| +.=.+|=...|+|++++|+..-+.+|....+.-.---+ .+|.+++|+..++.-
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 344455545543333 23345558889999999999999999876665443333 799999999999988
Q ss_pred hh-hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 77 SS-TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 77 ~~-~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.. +|.. +..+. .+..++..| +.++|++.|...+..
T Consensus 153 ~~~~w~~----~~~el---rGDill~kg-~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 153 KEESWAA----IVAEL---RGDILLAKG-DKQEARAAYEKALES 188 (207)
T ss_pred ccccHHH----HHHHH---hhhHHHHcC-chHHHHHHHHHHHHc
Confidence 54 3433 23455 788889987 999999999998876
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.9 Score=41.99 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=75.8
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHH-------HHHHHHHhhCC----CC-hh-hHHH---------
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAE-------EAAKKGLKINK----HD-CW-SQHA--------- 61 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae-------~~a~rAL~LnP----~d-aw-A~Ha--------- 61 (229)
+..-...+.++|..+|+-+.++-++|- +++.-..+|+ ++++..+.... .. .| ..|.
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 344566788899999988888777753 2233344444 44444444322 11 11 1111
Q ss_pred ---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhh
Q 026999 62 ---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY 132 (229)
Q Consensus 62 ---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~ 132 (229)
..|+.+|||+.+..-++..+..+ .+-.| -.+--++|+++ .|+++.++..+.=- ..-+.+-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-~l~Ir--enLie~LLelq-~Yad~q~lL~kYdD-----i~lpkSAti 332 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-NLNIR--ENLIEALLELQ-AYADVQALLAKYDD-----ISLPKSATI 332 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-hhhHH--HHHHHHHHhcC-CHHHHHHHHHHhcc-----ccCCchHHH
Confidence 47999999999999988555433 23344 24888999997 99998887765311 111124456
Q ss_pred hhHHHHH
Q 026999 133 LNALGLL 139 (229)
Q Consensus 133 ~Da~sLL 139 (229)
+-+++||
T Consensus 333 ~YTaALL 339 (539)
T PF04184_consen 333 CYTAALL 339 (539)
T ss_pred HHHHHHH
Confidence 7777766
|
The molecular function of this protein is uncertain. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.46 Score=27.05 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHH
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKK 47 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~r 47 (229)
+.++..+|.++..+|++++|+...++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 35778899999999999999988764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.64 E-value=1.1 Score=38.21 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhhCCCChhhHHH------h-----h-----CCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 37 QMSDAEEAAKKGLKINKHDCWSQHA------H-----D-----CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 37 ~~d~Ae~~a~rAL~LnP~dawA~Ha------~-----~-----Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
.++.|.+.++...+.||+|+.+++- . + .-++++|.=++.++. .+|- ...-.|-++.+|.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~----I~P~-~hdAlw~lGnA~t 80 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK----INPN-KHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH----H-TT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh----cCCc-hHHHHHHHHHHHH
Confidence 3678999999999999999998887 1 1 235677777777777 6664 3346788888887
Q ss_pred hCC---CCHHHHHHHHHhh
Q 026999 101 EGH---SPMRKVLEIYDNH 116 (229)
Q Consensus 101 ~~g---g~~d~Al~~yd~~ 116 (229)
.++ .+..+|-..|+..
T Consensus 81 s~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHH---HHHHHHHHHHH
T ss_pred HHHhhcCChHHHHHHHHHH
Confidence 753 2444555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.58 Score=28.53 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+..+|..|...| ++++|+++|.+.+..
T Consensus 2 l~~Lg~~~~~~g-~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQG-DYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 346899999997 999999999995543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=89.42 E-value=1.8 Score=36.22 Aligned_cols=77 Identities=17% Similarity=-0.021 Sum_probs=61.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH-HH-----hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ-HA-----HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~-Ha-----~~Gr~~egi~~le~ 75 (229)
|+.+.+...-.-..-.++.++-..--+|-++...++|++|....-.|..++++||-.. |+ +.|+.++|+.-++.
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHH
Confidence 6667777666666556665554444456678899999999999999999999997654 44 89999999999999
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
++.
T Consensus 131 a~~ 133 (165)
T PRK15331 131 VNE 133 (165)
T ss_pred HHh
Confidence 987
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.29 E-value=3.9 Score=41.44 Aligned_cols=111 Identities=11% Similarity=0.103 Sum_probs=87.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh--hhHHH----hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHA----HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da--wA~Ha----~~Gr~~egi~~le 74 (229)
+|..+++++++++++..+|.++-++-|+|=+++..++.+.|.+.+-.++...|+.+ |.+-+ ..|.+-.|...++
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999996 55555 6889999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHH--hCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYL--EGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l--~~gg~~d~Al~~yd~~i~~ 119 (229)
+..- -||--. ..| ++...+ ..| ..+.|..+..+.+..
T Consensus 744 rarl----kNPk~~--~lw-le~Ir~ElR~g-n~~~a~~lmakALQe 782 (913)
T KOG0495|consen 744 RARL----KNPKNA--LLW-LESIRMELRAG-NKEQAELLMAKALQE 782 (913)
T ss_pred HHHh----cCCCcc--hhH-HHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9865 344311 222 343333 354 888888887776654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=89.18 E-value=4.4 Score=31.68 Aligned_cols=83 Identities=12% Similarity=0.240 Sum_probs=58.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCC--------hhhHHH--------------------hhCCHHHHHHHHHHchhhccC
Q 026999 31 SLLELGQMSDAEEAAKKGLKINKHD--------CWSQHA--------------------HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 31 ~L~e~g~~d~Ae~~a~rAL~LnP~d--------awA~Ha--------------------~~Gr~~egi~~le~~~~~w~~ 82 (229)
.....|+..++.+..++|+++=..+ .|..-. ..|++++++.++++...
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~---- 90 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA---- 90 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh----
Confidence 3456788899999999999986443 454443 48999999999999988
Q ss_pred CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 83 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 83 ~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|+ .-.+|=.+-.+|...| ++.+|++.|++....
T Consensus 91 ~dP~-~E~~~~~lm~~~~~~g-~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 91 LDPY-DEEAYRLLMRALAAQG-RRAEALRVYERYRRR 125 (146)
T ss_dssp HSTT--HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred cCCC-CHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 5665 3445556667777886 999999999776544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.2 Score=39.91 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.+..+=-++.+.+++++|.+..++.|.++|+|+.-+=. ..|++..|+.-++...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45555567777777777777777777777777764443 57777777776666655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.45 E-value=8.9 Score=28.84 Aligned_cols=110 Identities=19% Similarity=0.311 Sum_probs=66.2
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCC-ChhhHHH--------hhCCHHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKH-DCWSQHA--------HDCCFKEAVQFME 74 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF-~L~e~g~~d~Ae~~a~rAL~LnP~-dawA~Ha--------~~Gr~~egi~~le 74 (229)
..+.....+++...+........... .+...|++++|.....+++.++|. ...+... ..|+.++++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 44555555666555544444444444 677778888888888888776663 2222222 3667777777777
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+........ ....+.-++..+...+ ++++++..+...+..
T Consensus 192 ~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~ 231 (291)
T COG0457 192 KALKLNPDD----DAEALLNLGLLYLKLG-KYEEALEYYEKALEL 231 (291)
T ss_pred HHHhhCccc----chHHHHHhhHHHHHcc-cHHHHHHHHHHHHhh
Confidence 777633331 1223334666666665 778888777776665
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.20 E-value=12 Score=38.92 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=58.9
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----------hhCCHHHHHHHHHHchhhccCCCCcchh
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----------HDCCFKEAVQFMEECSSTWSSCSSFMYT 89 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----------~~Gr~~egi~~le~~~~~w~~~~~~~~~ 89 (229)
...+....|-+....|+.+.|++.+++++..=|.+.|..-. -+|+.+++...|.++.+ +..-
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~-------~a~~ 529 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ-------MARQ 529 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH-------HHHH
Confidence 45677888889999999999999999999999999987666 59999999999999987 2245
Q ss_pred hhHHHHHHH
Q 026999 90 HNWWHVALC 98 (229)
Q Consensus 90 H~~WHlAL~ 98 (229)
|..+|++++
T Consensus 530 ~~~~~l~~~ 538 (894)
T COG2909 530 HDVYHLALW 538 (894)
T ss_pred cccHHHHHH
Confidence 555665544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.18 E-value=1.7 Score=37.76 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=51.3
Q ss_pred CCChhHHHHHHHhhCC-CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--hhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp-~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d--awA~Ha------~~Gr~~egi~ 71 (229)
+||..+++..-++++. .+.+|+-++--+|=++-+.++...|...-++-.+-||.- |..+-. -+|+++++..
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES 181 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH
Confidence 4677777777777776 455666555556666777777777777777777777653 222222 5677776666
Q ss_pred HHHHchhhccC
Q 026999 72 FMEECSSTWSS 82 (229)
Q Consensus 72 ~le~~~~~w~~ 82 (229)
-++.+...++.
T Consensus 182 afe~a~~~ypg 192 (251)
T COG4700 182 AFEVAISYYPG 192 (251)
T ss_pred HHHHHHHhCCC
Confidence 66666664433
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.39 E-value=1.7 Score=28.45 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHH
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 141 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwR 141 (229)
|+|-.|++.| |++.|.++.+..+... .....-.|-+||=+
T Consensus 4 dLA~ayie~G-d~e~Ar~lL~evl~~~-------~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 4 DLARAYIEMG-DLEGARELLEEVIEEG-------DEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHcC-ChHHHHHHHHHHHHcC-------CHHHHHHHHHHHhc
Confidence 7999999997 9999999999988431 24445677777644
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.92 E-value=1.3 Score=41.69 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=38.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da 56 (229)
|.+-+++..+.+||..+|+|..++--.|-++.-.-.||.|+.-.++|+++||+|-
T Consensus 321 ~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 3455666677777777777777777777777666677777777777777777665
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=86.50 E-value=2.4 Score=34.25 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=48.0
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHHhhCC--HHHHHHHHHHchhhccCCCCcchhhhHHHHHH
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCC--FKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 97 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~Gr--~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL 97 (229)
-|.+.|..++-++...|+|+++...+.+||-. -...|. .+||.-|+.-... -|+
T Consensus 53 FDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y--------FNRRGEL~qdeGklWIaaVfs----------------ra~ 108 (144)
T PF12968_consen 53 FDAFCHAGLSGALAGLGRYDECLQSADRALRY--------FNRRGELHQDEGKLWIAAVFS----------------RAV 108 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------HHHH--TTSTHHHHHHHHHHH----------------HHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--------HhhccccccccchhHHHHHHH----------------HHH
Confidence 36788999999999999999999999998731 113343 3566666543322 445
Q ss_pred HHHhCCCCHHHHHHHHHhhc
Q 026999 98 CYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 98 ~~l~~gg~~d~Al~~yd~~i 117 (229)
+.-.+| +.++|+.-|....
T Consensus 109 Al~~~G-r~~eA~~~fr~ag 127 (144)
T PF12968_consen 109 ALEGLG-RKEEALKEFRMAG 127 (144)
T ss_dssp HHHHTT--HHHHHHHHHHHH
T ss_pred HHHhcC-ChHHHHHHHHHHH
Confidence 545676 8898888886543
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.20 E-value=12 Score=28.05 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=77.6
Q ss_pred CChhHHHHHHHhhCC--CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH-------HHhhCCHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ-------HAHDCCFKEAVQF 72 (229)
Q Consensus 2 G~~~~~~~~~~ralp--~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~-------Ha~~Gr~~egi~~ 72 (229)
|+...+.....+.+. ..+.....+...+......+.+.++.+...+++..+|++.... ....|++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL 152 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 445556666666665 4666777777777888888889999999999999888762221 1168999999999
Q ss_pred HHHchhhccCCCC--cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSS--FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~--~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++.. .++ ........-....+...+ ++++++..+++.+..
T Consensus 153 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~ 196 (291)
T COG0457 153 YEKALE----LDPELNELAEALLALGALLEALG-RYEEALELLEKALKL 196 (291)
T ss_pred HHHHHh----cCCCccchHHHHHHhhhHHHHhc-CHHHHHHHHHHHHhh
Confidence 998855 222 122333333444455655 899999999887766
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.16 E-value=12 Score=36.69 Aligned_cols=126 Identities=16% Similarity=0.234 Sum_probs=82.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------h------------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------H------------ 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~------------ 62 (229)
+|+.+++++..-+.-..--++..++..+|-+++-..+-.+|++...++..+=|+||-.+-- .
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 3677777777777655555677778888888888888888888888888888888865543 1
Q ss_pred ----------------------hCCHHHHHHHHHHchhhccCCCCcchhhhHHH--HHHHHHhCCCCHHHHHHHHHhhch
Q 026999 63 ----------------------DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH--VALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 63 ----------------------~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH--lAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+.=.+++|.+++++.- +-|...-|. .|-|.-.. |+|.+|+++|.. |.
T Consensus 617 dsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-------iqp~~~kwqlmiasc~rrs-gnyqka~d~yk~-~h 687 (840)
T KOG2003|consen 617 DSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-------IQPNQSKWQLMIASCFRRS-GNYQKAFDLYKD-IH 687 (840)
T ss_pred hcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHhc-ccHHHHHHHHHH-HH
Confidence 1123455555555532 123334454 45665555 599999999955 43
Q ss_pred hhccCCCCCchhhhhhHHHHHHHHh
Q 026999 119 KELEKPDAVHPEVYLNALGLLLRVY 143 (229)
Q Consensus 119 ~~~~~~~~~~~~~~~Da~sLLwRL~ 143 (229)
+- ..+-+|..-+|-|+-
T Consensus 688 rk--------fpedldclkflvri~ 704 (840)
T KOG2003|consen 688 RK--------FPEDLDCLKFLVRIA 704 (840)
T ss_pred Hh--------CccchHHHHHHHHHh
Confidence 31 234579999998864
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.70 E-value=1.5 Score=25.72 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|-++|.+|+.+| ++++|+..|.+.|.-
T Consensus 4 ~~~~g~~~~~~~-~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLG-DYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 447999999997 999999999998865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.48 E-value=22 Score=36.27 Aligned_cols=175 Identities=14% Similarity=0.148 Sum_probs=103.7
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-hhCCHHHHHHHHHHchhhc
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-HDCCFKEAVQFMEECSSTW 80 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-~~Gr~~egi~~le~~~~~w 80 (229)
|+...+-..+.|-+. .|+++..+..+|=++-.--.|+.|-+..+.-=+- -.-.|+.|. +++++.++...++...+
T Consensus 438 g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-A~r~~~~~~~~~~~fs~~~~hle~sl~-- 513 (777)
T KOG1128|consen 438 GQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-AQRSLALLILSNKDFSEADKHLERSLE-- 513 (777)
T ss_pred cccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-HHHhhccccccchhHHHHHHHHHHHhh--
Confidence 444455555555555 5556666666655555555555555554332211 112233334 67999999999999998
Q ss_pred cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHH
Q 026999 81 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLAD 160 (229)
Q Consensus 81 ~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~ 160 (229)
.||. .--.|.-.+-+.+.++ +++.+++.|.+.+.. ++++ ..--.|-+..+-|+.=. ..-|..+-+
T Consensus 514 --~npl-q~~~wf~~G~~ALqle-k~q~av~aF~rcvtL--~Pd~---~eaWnNls~ayi~~~~k------~ra~~~l~E 578 (777)
T KOG1128|consen 514 --INPL-QLGTWFGLGCAALQLE-KEQAAVKAFHRCVTL--EPDN---AEAWNNLSTAYIRLKKK------KRAFRKLKE 578 (777)
T ss_pred --cCcc-chhHHHhccHHHHHHh-hhHHHHHHHHHHhhc--CCCc---hhhhhhhhHHHHHHhhh------HHHHHHHHH
Confidence 7765 4467778899999997 999999999999887 3333 22244444455454321 345777777
Q ss_pred HHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHH
Q 026999 161 CVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGL 198 (229)
Q Consensus 161 ~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~ 198 (229)
...-....-..+=|++|.+ ...|..+.+-+...++
T Consensus 579 AlKcn~~~w~iWENymlvs---vdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 579 ALKCNYQHWQIWENYMLVS---VDVGEFEDAIKAYHRL 613 (777)
T ss_pred HhhcCCCCCeeeechhhhh---hhcccHHHHHHHHHHH
Confidence 6665433334456666643 3455554444443333
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.00 E-value=1.6 Score=38.90 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=48.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS 58 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA 58 (229)
||.+.+.+...|++..-|+....-.-+++..+..|+++.|-+..++-|+++|.|--+
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 778888888889988888777777778888888999999999999999999988543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.97 E-value=0.98 Score=25.96 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++|.++...| ++++|++.|++.|..
T Consensus 3 ~~~~a~~~~~~g-~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLG-DYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 357999999986 999999999888765
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.83 E-value=3.6 Score=37.33 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=50.6
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.|.-+..+.=.|.+....|+|++|+..-+.||.-.|+|+-.+-. ++|...+..+-......
T Consensus 203 ~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 203 TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 45566677777888999999999999999999999999988776 89999888865555544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.59 E-value=1.4 Score=26.50 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
++|.+|...| ++++|+.++.+.+...
T Consensus 7 ~la~~~~~~g-~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 7 NLANAYRAQG-RYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHCT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh-hcchhhHHHHHHHHHH
Confidence 5999999997 9999999998887764
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.05 E-value=1.5 Score=23.36 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|..+|.++...| ++++|+..|+..|..
T Consensus 4 ~~~~a~~~~~~~-~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLG-DYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHcc
Confidence 567999999997 999999999887753
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=83.66 E-value=9.7 Score=33.86 Aligned_cols=108 Identities=12% Similarity=0.023 Sum_probs=51.7
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHH---hCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLE---LGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e---~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
..+|....++....+..+.+ +.++++.| .++.+.|.+..+++|..=|++.--+-. ..|+.+.+...+++
T Consensus 18 ~~aR~vF~~a~~~~~~~~~v--y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer 95 (280)
T PF05843_consen 18 EAARKVFKRARKDKRCTYHV--YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFER 95 (280)
T ss_dssp HHHHHHHHHHHCCCCS-THH--HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 44555556665322222222 33444443 234555666666666666666433333 56666666666666
Q ss_pred chhhccCCCCcc-hhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 76 CSSTWSSCSSFM-YTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 76 ~~~~w~~~~~~~-~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+... +++-. ..-+|=-+.-|-..-| +.+.+.+++++...
T Consensus 96 ~i~~---l~~~~~~~~iw~~~i~fE~~~G-dl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 96 AISS---LPKEKQSKKIWKKFIEFESKYG-DLESVRKVEKRAEE 135 (280)
T ss_dssp HCCT---SSCHHHCHHHHHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred HHHh---cCchhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 6552 12111 1224444555555554 66666666655444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=83.53 E-value=6.7 Score=37.15 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=77.4
Q ss_pred CCChhHHHHHHHhhCCC-CCCchhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPY-NQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~-~~~~~~~~g~~AF-~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~ 72 (229)
.|+.+.+...+..+++. |++. ...+ .-..-++...=++.+++.+...|++|-.+-+ -.+.+.+|-.+
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh-----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH
Confidence 47888999999999995 3333 2333 3445678888899999999999999966666 57788999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
++.+.+ ..|- .+=|==+|..+...| +.++|-..+...+.-.
T Consensus 351 leaAl~----~~~s--~~~~~~la~~~~~~g-~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 351 LEAALK----LRPS--ASDYAELADALDQLG-EPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHh----cCCC--hhhHHHHHHHHHHcC-ChHHHHHHHHHHHHHh
Confidence 998877 2222 111122788888886 8888888887765433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=83.27 E-value=17 Score=32.24 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=59.1
Q ss_pred hCCHHHHHHHHHHHHhhCC--CChhhHHH----h-hCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 026999 35 LGQMSDAEEAAKKGLKINK--HDCWSQHA----H-DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 35 ~g~~d~Ae~~a~rAL~LnP--~dawA~Ha----~-~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d 107 (229)
++..++|+.+..+|+.-++ -+.|...| . .++.+-|...+|.....+.. + .-+|.+...+++..+ +.+
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~----~~~~~~Y~~~l~~~~-d~~ 87 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-D----PDFWLEYLDFLIKLN-DIN 87 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHTT--HH
T ss_pred hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-C----HHHHHHHHHHHHHhC-cHH
Confidence 3348999999999995444 23444444 2 46666699999999986666 2 357889999999997 999
Q ss_pred HHHHHHHhhchh
Q 026999 108 KVLEIYDNHIWK 119 (229)
Q Consensus 108 ~Al~~yd~~i~~ 119 (229)
.|..+|++.|..
T Consensus 88 ~aR~lfer~i~~ 99 (280)
T PF05843_consen 88 NARALFERAISS 99 (280)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=82.79 E-value=19 Score=33.47 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=75.8
Q ss_pred CCChhHHHHHHHhhCCC--------C------C-------------Cchh--HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 026999 1 MGRPDLCFDIIHQVLPY--------N------Q-------------QEDF--IFGILAFSLLELGQMSDAEEAAKKGLKI 51 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~--------~------~-------------~~~~--~~g~~AF~L~e~g~~d~Ae~~a~rAL~L 51 (229)
.||...+-+.++|+|=. . . +-++ ++..+--.|.+.|.+.-|.+.++--|.|
T Consensus 53 ~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsL 132 (360)
T PF04910_consen 53 QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSL 132 (360)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 47888888888887521 1 1 1112 4445555899999999999999999999
Q ss_pred CCC-ChhhHHH-------hhCCHHHHHHHHHHchh----hc-cCCCCcchhhhHHHHHHHHHhCCCCH------------
Q 026999 52 NKH-DCWSQHA-------HDCCFKEAVQFMEECSS----TW-SSCSSFMYTHNWWHVALCYLEGHSPM------------ 106 (229)
Q Consensus 52 nP~-dawA~Ha-------~~Gr~~egi~~le~~~~----~w-~~~~~~~~~H~~WHlAL~~l~~gg~~------------ 106 (229)
+|. ||.++=- ..++++-=+++.++... .| ...+++.. =.||+++.++ +.
T Consensus 133 dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~-----S~aLA~~~l~-~~~~~~~~~~~~~~ 206 (360)
T PF04910_consen 133 DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF-----SIALAYFRLE-KEESSQSSAQSGRS 206 (360)
T ss_pred CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH-----HHHHHHHHhc-Cccccccccccccc
Confidence 999 9988765 68888888888887644 22 22333322 2555555554 44
Q ss_pred ---HHHHHHHHhhchh
Q 026999 107 ---RKVLEIYDNHIWK 119 (229)
Q Consensus 107 ---d~Al~~yd~~i~~ 119 (229)
++|-....+.|..
T Consensus 207 ~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 207 ENSESADEALQKAILR 222 (360)
T ss_pred cchhHHHHHHHHHHHH
Confidence 6666666665544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.52 E-value=15 Score=36.23 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=86.6
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
...+|.....++-..|-+--+.|..-+-+ ..+++|+..++.++=|+-.|.|+.++-- ..|+.+.+.+..+=++
T Consensus 420 l~~ARkiLG~AIG~cPK~KlFk~YIelEl-qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 420 LTGARKILGNAIGKCPKDKLFKGYIELEL-QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred cHHHHHHHHHHhccCCchhHHHHHHHHHH-HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 45677777777777888877777776655 5689999999999999999999776655 6899999999999887
Q ss_pred hhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 78 STWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 78 ~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
. .|. -+|-.+|=-.=.|-++.| .++.+..+|.+.+..
T Consensus 499 ~----qp~ldmpellwkaYIdFEi~~~-E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 499 S----QPALDMPELLWKAYIDFEIEEG-EFEKARALYERLLDR 536 (677)
T ss_pred c----CcccccHHHHHHHhhhhhhhcc-hHHHHHHHHHHHHHh
Confidence 6 232 246666666677778886 999999999888766
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=82.21 E-value=15 Score=34.72 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=86.0
Q ss_pred CChhHHHHHHHhhCC-CCCCchhHHHHHHHHHH----H-----hCCHHHHHHHHHHHHhhCCCChhhHHH-----hhCCH
Q 026999 2 GRPDLCFDIIHQVLP-YNQQEDFIFGILAFSLL----E-----LGQMSDAEEAAKKGLKINKHDCWSQHA-----HDCCF 66 (229)
Q Consensus 2 G~~~~~~~~~~ralp-~~~~~~~~~g~~AF~L~----e-----~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~~Gr~ 66 (229)
||.+++++.+..++. ..+.++..+|+.|=++- + ...+++|+...+||++++|+-=-++.+ ..|..
T Consensus 196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD 275 (374)
T ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc
Confidence 899999999999555 56788889998886542 2 235888999999999999876555555 34432
Q ss_pred HHHH--------HHHHHchhhccCCCCcchhhhHHHHHHH---HHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhH
Q 026999 67 KEAV--------QFMEECSSTWSSCSSFMYTHNWWHVALC---YLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNA 135 (229)
Q Consensus 67 ~egi--------~~le~~~~~w~~~~~~~~~H~~WHlAL~---~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da 135 (229)
.+.. .+-.-.-+.+. .-..-.||-.|-+ .+-.| ++++|...+.+.+.. +...=.....+..
T Consensus 276 ~~~~~el~~i~~~l~~llg~kg~----~~~~~dYWd~ATl~Ea~vL~~-d~~ka~~a~e~~~~l---~~~~W~l~St~~n 347 (374)
T PF13281_consen 276 FETSEELRKIGVKLSSLLGRKGS----LEKMQDYWDVATLLEASVLAG-DYEKAIQAAEKAFKL---KPPAWELESTLEN 347 (374)
T ss_pred ccchHHHHHHHHHHHHHHHhhcc----ccccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhc---CCcchhHHHHHHH
Confidence 2222 11111112111 1223466776644 23355 999999999888865 2221123335666
Q ss_pred HHHHHHHhhcCC
Q 026999 136 LGLLLRVYVRGE 147 (229)
Q Consensus 136 ~sLLwRL~l~G~ 147 (229)
.-|+=++.-.-.
T Consensus 348 i~Li~~~~~~~~ 359 (374)
T PF13281_consen 348 IKLIRHFRKRPE 359 (374)
T ss_pred HHHHHHHhcCCC
Confidence 666666555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.04 E-value=17 Score=34.22 Aligned_cols=109 Identities=10% Similarity=0.081 Sum_probs=83.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQF 72 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~ 72 (229)
|+++.++..-.|.+..--..|.++..+|......++||-+....+||++...++.-+..- ..|++.-+..-
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 567778888888888877888899999999999999999999999999998876555444 68888888887
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 116 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~ 116 (229)
++=+.. +++.+ +--.-++|......| ++++|..+|...
T Consensus 418 frlaL~---~d~~h--~ealnNLavL~~r~G-~i~~Arsll~~A 455 (478)
T KOG1129|consen 418 FRLALT---SDAQH--GEALNNLAVLAARSG-DILGARSLLNAA 455 (478)
T ss_pred HHHHhc---cCcch--HHHHHhHHHHHhhcC-chHHHHHHHHHh
Confidence 777766 22222 222235888776665 999999998653
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=81.99 E-value=3 Score=25.93 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.1
Q ss_pred HHHHHHHhCCHHHHHHH--HHHHHhhCCCC
Q 026999 28 LAFSLLELGQMSDAEEA--AKKGLKINKHD 55 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~--a~rAL~LnP~d 55 (229)
+|..+-..|+|++|+.. .+-+..++|.|
T Consensus 7 ~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 47788999999999999 77999999876
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=81.97 E-value=6.4 Score=31.00 Aligned_cols=98 Identities=12% Similarity=0.002 Sum_probs=62.2
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHH
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 141 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwR 141 (229)
..|+.++|++|+++..+.-...++.+...+.=-.-+=.+.. |+..+|++...+++.+.. . ....++-+..+||--
T Consensus 13 ~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~-~~~~~Ai~y~r~~l~~~~--~--~~~~~l~~~~~lL~~ 87 (145)
T PF10607_consen 13 LNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLRE-GDIMEAIEYARKHLSPFN--D--EFLEELKKLMSLLAY 87 (145)
T ss_pred HcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHH-HhHHHHHHHHHHHhhhhH--H--HHHHHHHHHHHHHHc
Confidence 68999999999999976554444443433311112222334 489999999999885531 1 246667788898855
Q ss_pred HhhcC---Ccc---cccccHHHHHHHHHh
Q 026999 142 VYVRG---ELD---VFGNRLKVLADCVAD 164 (229)
Q Consensus 142 L~l~G---~~v---~vg~rW~~la~~~~~ 164 (229)
-.... ..+ --.+||+.|++....
T Consensus 88 ~~~~~~~~s~~~~l~~~~~~~~la~~~~~ 116 (145)
T PF10607_consen 88 PDPEEPLPSPYKELLSPERREELAEEFNS 116 (145)
T ss_pred CCcccccchHHHHHhChHHHHHHHHHHHH
Confidence 55443 110 002688888888776
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.79 E-value=5.4 Score=35.08 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=49.2
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHA-----------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
+--+|+|.+|..-+.+||++.|--+--.-+ .++..+.+|.-..+++.-|+.-+ .... --|-.|-
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~---kAl~--RRAeaye 179 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE---KALE--RRAEAYE 179 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH---HHHH--HHHHHHH
Confidence 335677777777777777777766544333 46666777777777777333311 1111 2344555
Q ss_pred hCCCCHHHHHHHHHhhchh
Q 026999 101 EGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~ 119 (229)
... .||+|++=|...+..
T Consensus 180 k~e-k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KME-KYEEALEDYKKILES 197 (271)
T ss_pred hhh-hHHHHHHHHHHHHHh
Confidence 553 778888877777654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.03 E-value=3.5 Score=23.95 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 91 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.|-.+|..|..+| ++++|++.|.+.+.-
T Consensus 3 ~~~~lg~~y~~~~-~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLG-DYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 3446899999997 999999999887764
|
... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.96 E-value=3.2 Score=43.64 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=53.6
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCChhhHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-MSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~-~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
+.+++++...+|+..+|++..++..+|.++-++++ .++|-+....|.+++|++.-|+--
T Consensus 17 ~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkG 76 (1238)
T KOG1127|consen 17 EYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKG 76 (1238)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHH
Confidence 56788999999999999999999999999999997 999999999999999999777644
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.34 E-value=0.67 Score=43.19 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=68.8
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|.++.+.+...++++.+|....+|+-.+-++.+...-..|++=+..|++|||+.+-..-. .+|.++++...+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 677888899999999999999999999999999999999999999999999999866554 78999998888887
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
+..
T Consensus 208 a~k 210 (377)
T KOG1308|consen 208 ACK 210 (377)
T ss_pred HHh
Confidence 754
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.08 E-value=10 Score=31.25 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=67.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-hhhHHH---------hhCCHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-CWSQHA---------HDCCFKEAVQ 71 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d-awA~Ha---------~~Gr~~egi~ 71 (229)
|+.+.+++...+++..-|..+-+++..|-++--.|+-++|..--.+||+|.-.- --+-|+ .+|+-+.+..
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 788999999999999999999999999999999999999999999999996443 334444 6899999998
Q ss_pred HHHHchh
Q 026999 72 FMEECSS 78 (229)
Q Consensus 72 ~le~~~~ 78 (229)
-++.+-+
T Consensus 137 DFe~AA~ 143 (175)
T KOG4555|consen 137 DFEAAAQ 143 (175)
T ss_pred hHHHHHH
Confidence 8888866
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 229 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 39.5 bits (91), Expect = 6e-04
Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 45/208 (21%)
Query: 8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCCFK 67
D I +F L Q ++ ++ L+IN S +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWT-----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 68 EA--VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPD 125
++E+ ++ F + + L+ + +R+ L EL +P
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYN------VSRLQPYLKLRQAL--------LEL-RP- 149
Query: 126 AVHPEVYLNALGLLLRVYVRGELDVFGNRLK-VLADCVADQANWYLECHLDLLILWALAN 184
V ++ + G G K +A V ++ ++C +D I W N
Sbjct: 150 --AKNVLIDGVL--------G----SG---KTWVALDVC--LSYKVQCKMDFKIFW--LN 188
Query: 185 TGEVSKAEDLLKGLKSRHSKMIKKKQEL 212
+ E +L+ L+ ++
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSR 216
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.29 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.23 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.2 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.13 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.13 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.09 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.08 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.07 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.06 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.05 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.03 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.02 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.98 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.94 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.93 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.93 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.92 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.91 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.91 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.91 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.89 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.87 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.86 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.86 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.85 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.84 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.84 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.84 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.84 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.82 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.81 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.81 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.8 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.8 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.79 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.78 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.77 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.75 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.75 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.74 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.74 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.73 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 98.73 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.73 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 98.73 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.73 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.72 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.72 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.7 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.7 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.69 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.69 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.69 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.67 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.65 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.65 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.65 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.63 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.62 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.62 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.61 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.61 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.6 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.59 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.59 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.59 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.59 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.58 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.56 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.56 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.54 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.53 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.53 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.52 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.52 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.48 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.48 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.48 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.48 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.46 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.42 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.39 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.38 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.34 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.34 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.32 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.32 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.32 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.31 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.31 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.31 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.3 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.29 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.29 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.28 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.27 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.27 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.27 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.24 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.23 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.15 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.15 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.14 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.13 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.13 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.13 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.11 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.08 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.07 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.06 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.04 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.03 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.03 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.03 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.03 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.03 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.02 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.01 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.95 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.93 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.89 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.88 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.87 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 97.8 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.8 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.75 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.75 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.67 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.63 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.63 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 97.55 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.5 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.48 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.47 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.45 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 97.41 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.41 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 97.38 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.38 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.3 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.28 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.25 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.16 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.15 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.09 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.94 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 96.88 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.46 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.32 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.27 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.24 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.12 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.09 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 95.9 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 95.53 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.35 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 95.33 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.95 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 94.41 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 94.02 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 92.62 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 92.5 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 91.67 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 91.65 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.53 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.27 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.62 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.2 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.63 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.25 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 83.24 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.73 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 82.52 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.02 |
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.5e-11 Score=96.78 Aligned_cols=113 Identities=16% Similarity=0.094 Sum_probs=101.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hh-----------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HD----------- 63 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~----------- 63 (229)
.|+.++++...++++..+|+++.++..+|.++...|++++|++..+++++++|+++.++.. .+
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 97 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK 97 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 4899999999999999999999999999999999999999999999999999999988776 57
Q ss_pred CCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|+..++++.. .+|-. .-.|-.+|..+...| ++++|++.|++.+..
T Consensus 98 g~~~~A~~~~~~al~----~~P~~-~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 98 GYLEQALSVLKDAER----VNPRY-APLHLQRGLVYALLG-ERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHHHHHHH----HCTTC-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH----hCccc-HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhc
Confidence 999999999999988 34431 234457999999997 999999999999887
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.5e-11 Score=94.98 Aligned_cols=103 Identities=12% Similarity=0.015 Sum_probs=91.1
Q ss_pred HHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCC
Q 026999 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCS 84 (229)
Q Consensus 11 ~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~ 84 (229)
..+++..+|+++.++..+|..+.+.|+|++|++..+++++++|+++.++.. .+|++++|+..++++... +
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----~ 100 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----G 100 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----S
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----C
Confidence 456777889999999999999999999999999999999999999999887 799999999999999883 3
Q ss_pred CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 85 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 85 ~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|-. ...|.++|.+|+.+| ++++|++.|++.+..
T Consensus 101 P~~-~~~~~~lg~~~~~lg-~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 KND-YTPVFHTGQCQLRLK-APLKAKECFELVIQH 133 (151)
T ss_dssp SSC-CHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 321 234558999999997 999999999999886
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=95.82 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=100.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhCCCChhhHHH------hh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-----------GQMSDAEEAAKKGLKINKHDCWSQHA------HD 63 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~-----------g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~ 63 (229)
.|+.+.+....++++...|+++.++..+|.++... |++++|++..++|++++|+++.++.. .+
T Consensus 52 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 52 LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131 (217)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 48999999999999999999999999999999999 99999999999999999999988776 79
Q ss_pred CCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|+..++++...- . + .-.+..+|.+++..| ++++|+..|++.+..
T Consensus 132 g~~~~A~~~~~~al~~~-~-~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-D-T----PEIRSALAELYLSMG-RLDEALAQYAKALEQ 180 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-C-C----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcc-c-c----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 99999999999998732 1 2 234558999999997 999999999998876
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=91.57 Aligned_cols=112 Identities=8% Similarity=-0.037 Sum_probs=97.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.++++...+++++..|+++..+..+|-.+.+.|+|++|++..++||+++|+++.++.. .+|++++|+..+++
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999998887 79999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHH-Hhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY-DNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~y-d~~i~~ 119 (229)
+.. .+|-. .-.+..+|.+++..| +++++.+.| ++.+.-
T Consensus 91 al~----~~p~~-~~~~~~la~~~~~~~-~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 91 SVE----LNPTQ-KDLVLKIAELLCKND-VTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHH----HCTTC-HHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHH
T ss_pred HHH----hCCCC-HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHh
Confidence 988 44432 234557999999987 888877664 777765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-10 Score=89.01 Aligned_cols=105 Identities=12% Similarity=-0.022 Sum_probs=92.2
Q ss_pred HHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccC
Q 026999 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 9 ~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~ 82 (229)
....+++...|.+...+..+|..+...|+|++|++..+++++++|+++.++.. .+|++++|+..++++...
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--- 84 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--- 84 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 45678888999999999999999999999999999999999999999988877 799999999999999873
Q ss_pred CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 83 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 83 ~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|-. .-.+..+|.+++..| ++++|++.|++.+..
T Consensus 85 -~p~~-~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 -DIXE-PRFPFHAAECLLQXG-ELAEAESGLFLAQEL 118 (148)
T ss_dssp -STTC-THHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred -CCCC-chHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 3321 234567999999997 999999999998876
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-09 Score=107.53 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=102.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.+++....++++..+|+++.++..+|.++...|++++|++..++||+++|+++.++.. .+|++++|+..++
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~ 101 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 101 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999887 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.. .+|-. .-.|-.+|..|.++| ++++|++.|++.+..
T Consensus 102 kAl~----l~P~~-~~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 102 RAIQ----INPAF-ADAHSNLASIHKDSG-NIPEAIASYRTALKL 140 (723)
T ss_dssp HHHH----HCTTC-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHH----hCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9988 44431 233447999999997 999999999999876
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-09 Score=83.47 Aligned_cols=104 Identities=12% Similarity=0.004 Sum_probs=89.4
Q ss_pred HHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCC
Q 026999 10 IIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSC 83 (229)
Q Consensus 10 ~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~ 83 (229)
...+++...|++...+..+|..+...|+|++|++..+++++++|+++.++.. .+|++++|+..++++.. .
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~ 81 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL----M 81 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----H
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----c
Confidence 5677888899999999999999999999999999999999999999988877 79999999999999988 3
Q ss_pred CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 84 SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 84 ~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|.. ...+.++|.+++..| ++++|++.|++.+..
T Consensus 82 ~p~~-~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 82 DINE-PRFPFHAAECHLQLG-DLDGAESGFYSARAL 115 (142)
T ss_dssp CTTC-THHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CCCC-cHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 3332 235568999999997 999999999998766
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=82.89 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=87.3
Q ss_pred HHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCC
Q 026999 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCS 84 (229)
Q Consensus 11 ~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~ 84 (229)
..|+...+|+.+..+...|-.+...|+|++|++..++||+++|+++.++.. ..|++++|+..+++++. .+
T Consensus 2 ~ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~ 77 (126)
T 4gco_A 2 NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR----LD 77 (126)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HC
T ss_pred hhHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH----hh
Confidence 356777899999999999999999999999999999999999999988877 79999999999999988 34
Q ss_pred CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 85 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 85 ~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|. ..-.|..+|.+++.+| ++++|++.|++.+.-
T Consensus 78 p~-~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l 110 (126)
T 4gco_A 78 SK-FIKGYIRKAACLVAMR-EWSKAQRAYEDALQV 110 (126)
T ss_dssp TT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred hh-hhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 33 2235567999999997 999999999998876
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-08 Score=77.70 Aligned_cols=180 Identities=10% Similarity=0.033 Sum_probs=127.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hh-CCHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HD-CCFKEAVQFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~-Gr~~egi~~l 73 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|.+..+++++++|+++.+... .. |++++++..+
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988776 68 9999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 153 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~ 153 (229)
++... ...+|. ....+..+|.++...| ++++|+..|++.+... +. .......-+.++.++ |
T Consensus 101 ~~~~~--~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~la~~~~~~---~------- 161 (225)
T 2vq2_A 101 DKALA--DPTYPT-PYIANLNKGICSAKQG-QFGLAEAYLKRSLAAQ--PQ---FPPAFKELARTKMLA---G------- 161 (225)
T ss_dssp HHHHT--STTCSC-HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS--TT---CHHHHHHHHHHHHHH---T-------
T ss_pred HHHHc--CcCCcc-hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC--CC---CchHHHHHHHHHHHc---C-------
Confidence 99987 221222 2356667999999997 9999999999888752 11 122222222222221 1
Q ss_pred cHHHHHHHHHhh---hh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 154 RLKVLADCVADQ---AN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 154 rW~~la~~~~~~---~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
++++-...+..- .+ .....+ ......+...|+.+.+...++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDL--LLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 233333333221 11 222111 22344456788888888888887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=3.6e-10 Score=103.05 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=101.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-MSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~-~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
.|+.++++....+++..+|.+..++..+|.++...|+ +++|++..++||+++|+++.+++. ..|++++++.++
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4788999999999999999999999999999999996 999999999999999999999888 789999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++. .+|- ..+.|-+++.++..+| ++++|++.|++.|..
T Consensus 190 ~kal~----ldP~-~~~a~~~lg~~~~~~g-~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 190 ADILN----QDAK-NYHAWQHRQWVIQEFK-LWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHH----HCTT-CHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHH
T ss_pred HHHHH----hCcc-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh
Confidence 99988 4544 3577889999999987 999999999998876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-09 Score=83.35 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=73.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.++++...++++..+|+++.++..+|.++...|++++|++..++++..+|+++.+... ..+++++++..+++
T Consensus 19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (184)
T 3vtx_A 19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQR 98 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777766555 45666666666666
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+... +|. ....+..+|.++...| ++++|++.|++.+..
T Consensus 99 a~~~----~~~-~~~~~~~lg~~~~~~g-~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 99 AIAL----NTV-YADAYYKLGLVYDSMG-EHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHh----Ccc-chHHHHHHHHHHHHhC-CchhHHHHHHHHHHh
Confidence 5552 221 1123334566666654 666666666665554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.02 E-value=9.1e-09 Score=80.96 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.+.++....+++...|.++.+...+|..+...++++.|.+..+++++++|+++.+... .+|++++|+..++
T Consensus 52 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 52 IGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 3677777777777777777777777777777777777777777777777777777776666 5777777777777
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.. .+|.. ...|-.+|.+|..+| ++++|++.|++.|..
T Consensus 132 ~~l~----~~p~~-~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 132 KTIS----IKPGF-IRAYQSIGLAYEGKG-LRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHH----HCTTC-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred HHHH----hcchh-hhHHHHHHHHHHHCC-CHHHHHHHHHHHHhC
Confidence 7766 23321 234446777777775 777777777776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-09 Score=93.99 Aligned_cols=114 Identities=7% Similarity=-0.006 Sum_probs=100.5
Q ss_pred CCC-hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 1 MGR-PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G~-~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
+|+ .+.++....+++..+|.+..++..+|.++...|++++|++..++||+++|+++.++.. ..|++++++.++
T Consensus 144 ~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 144 LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 475 9999999999999999999999999999999999999999999999999999998887 799999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHH-----HHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV-----LEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~A-----l~~yd~~i~~ 119 (229)
++++. .+|. ....|.+++..+..++|.+++| ++.|++.|..
T Consensus 224 ~~al~----l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 224 DQLLK----EDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp HHHHH----HCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----hCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 99998 4543 2356678999998855465777 5889998876
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5.8e-08 Score=79.34 Aligned_cols=182 Identities=14% Similarity=0.062 Sum_probs=127.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++...|.++.++..+|..+...|++++|++..+++++++|+++.+... .+|++++|+..++
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 129 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4888999999999999999999999999999999999999999999999999999877666 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
+... ...+|. ....+..+|..++..| ++++|++.|++.+... +. .......-+.++ .. ..+
T Consensus 130 ~~~~--~~~~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~--~~---~~~~~~~la~~~----~~------~g~ 190 (252)
T 2ho1_A 130 EASQ--DTLYPE-RSRVFENLGLVSLQMK-KPAQAKEYFEKSLRLN--RN---QPSVALEMADLL----YK------ERE 190 (252)
T ss_dssp HHTT--CTTCTT-HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--SC---CHHHHHHHHHHH----HH------TTC
T ss_pred HHHh--CccCcc-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC--cc---cHHHHHHHHHHH----HH------cCC
Confidence 9987 111222 2345567999999987 9999999999888752 11 121122222222 21 123
Q ss_pred HHHHHHHHHhhhhccccchhhHHH--HHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 155 LKVLADCVADQANWYLECHLDLLI--LWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 155 W~~la~~~~~~~~~~~~~F~d~H~--~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
++.-...+..-..... ...+.+. ...+...|+.+.+.+.++.+.+..
T Consensus 191 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4444444433221111 1223333 344567888888888887776653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.98 E-value=9.9e-09 Score=74.27 Aligned_cols=112 Identities=13% Similarity=0.233 Sum_probs=96.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++...++++...|.++..+..+|..+...|++++|++..++++.++|+++.+... ..|++++|+.++++
T Consensus 15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 788999999999998888899999999999999999999999999999999999877665 78999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....-+. ..-.+..+|..+...| ++++|+..|++.+..
T Consensus 95 ~~~~~~~-----~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 95 ALELDPR-----SAEAWYNLGNAYYKQG-DYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHCTT-----CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHhCCC-----ChHHHHHHHHHHHHHc-cHHHHHHHHHHHHcc
Confidence 9873222 1234567899999987 999999999887754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9.8e-09 Score=78.70 Aligned_cols=112 Identities=9% Similarity=0.066 Sum_probs=78.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++....+++...|.++.++..+|..+...|++++|.+..+++++++|+++.+... ..|++++++..+++
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 101 (186)
T 3as5_A 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101 (186)
T ss_dssp TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 667777777777777777777777777777777777777777777777777777766555 56777777777777
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....-+. ....+..+|..+...| ++++|++.|.+.+..
T Consensus 102 ~~~~~~~-----~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 102 VAEANPI-----NFNVRFRLGVALDNLG-RFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHCTT-----CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCcH-----hHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhc
Confidence 7663222 1233445677777775 777777777776655
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-08 Score=83.40 Aligned_cols=116 Identities=12% Similarity=0.089 Sum_probs=98.5
Q ss_pred CCChhHHHHHHHhhCCCCCCc---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------h------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------H------ 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~---~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~------ 62 (229)
.|+.+.+....++++..+|.+ +.++..+|.++...|+|++|+...++++.++|+++...-+ .
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 489999999999999998888 7889999999999999999999999999999987654333 4
Q ss_pred --hCCHHHHHHHHHHchhhccCCCCcchhhhH--------------HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 63 --DCCFKEAVQFMEECSSTWSSCSSFMYTHNW--------------WHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 63 --~Gr~~egi~~le~~~~~w~~~~~~~~~H~~--------------WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|++++|+..+++.....+. ++. ..-.. ..+|.+|+..| ++++|+..|++.+..
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p~-~~~-~~~a~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYPN-HEL-VDDATQKIRELRAKLARKQYEAARLYERRE-LYEAAAVTYEAVFDA 177 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTT-CTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHCcC-chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 89999999999999987666 322 21122 67899999997 999999999998875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-07 Score=79.89 Aligned_cols=112 Identities=10% Similarity=0.046 Sum_probs=80.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
|+.+.+.....+++...|.++.++..+|..+...| ++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 66777777777777777777777777788787888 7888888888888888887766655 6788888888887
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++...-+. + .-.+..+|..++..| ++++|++.|++.+..
T Consensus 150 ~a~~~~~~-~----~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 150 TAAQLMKG-C----HLPMLYIGLEYGLTN-NSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHTTT-C----SHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHhccc-c----HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 77763332 1 122334777777776 788888888776654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.4e-09 Score=84.08 Aligned_cols=117 Identities=9% Similarity=0.007 Sum_probs=100.9
Q ss_pred CCChhHHHHHHHhhCCCCC-CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQ-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~-~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
.|+.+.+.....+++...| .++.++..+|.++...|++++|++..++|++++|+++.++.. .+|++++|+..+
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATL 99 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4889999999999999888 888888889999999999999999999999999999988877 799999999999
Q ss_pred HHchhhccCCCCcch---hhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMY---THNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~---~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++...-+. ++... .-.+..+|..++..| ++++|++.|++.+..
T Consensus 100 ~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 100 TEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAG-NIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTS
T ss_pred HHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhc-cHHHHHHHHHHHHhc
Confidence 999884444 22111 124667999999997 999999999998875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=7.2e-08 Score=84.30 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=56.9
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.+.....+++...|+++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++++..+++
T Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555566666666655555555555555555555556666655555555555555544443 34555555555555
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+.. .+|- ....+..++..+...| ++++|++.|++.+.
T Consensus 229 al~----~~p~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 229 ALS----LSPN-HAVVHGNLACVYYEQG-LIDLAIDTYRRAIE 265 (388)
T ss_dssp HHH----HCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHh----hCcC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 444 1111 1122223444444443 55555555544443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.3e-09 Score=85.61 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=83.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHH----------------HHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGI----------------LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~----------------~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--- 61 (229)
.|+.+.+.....+++..+|+++.++.. +|.++...|++++|++..+++|+++|+++.++..
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 96 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 477888888888888888888777777 8888888888888888888888888888877766
Q ss_pred ---hhCCHHHHHHHHHHchhhccCCCCc-------------------------------chhhhHHHHHHHHHhCCCCHH
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSCSSF-------------------------------MYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~~~~-------------------------------~~~H~~WHlAL~~l~~gg~~d 107 (229)
.+|++++|+..++++...-+. ++. .....++..++.++..| +|+
T Consensus 97 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~-~~~ 174 (208)
T 3urz_A 97 MQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT-RYE 174 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH-THH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc-CHH
Confidence 688888888888888663222 100 00012344555666665 788
Q ss_pred HHHHHHHhhchh
Q 026999 108 KVLEIYDNHIWK 119 (229)
Q Consensus 108 ~Al~~yd~~i~~ 119 (229)
+|+..|++.|..
T Consensus 175 ~A~~~~~~al~l 186 (208)
T 3urz_A 175 KARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh
Confidence 888888877765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-08 Score=80.53 Aligned_cols=112 Identities=11% Similarity=0.080 Sum_probs=95.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCH--HHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCF--KEAVQF 72 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~--~egi~~ 72 (229)
|+.+.+.....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++ ++|+..
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 677788888999999999999999999999999999999999999999999999877665 46898 999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++.... +|. ..-.+..+|.+++..| ++++|+..|++.+..
T Consensus 104 ~~~al~~----~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 104 IDKALAL----DSN-EITALMLLASDAFMQA-NYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHh----CCC-cHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhh
Confidence 9999873 332 1235567999999997 999999999998876
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.1e-09 Score=103.75 Aligned_cols=113 Identities=10% Similarity=0.048 Sum_probs=101.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.++++...++++..+|+++.++..+|.++.+.|++++|++..++||+++|+++.++.. .+|++++|++.++
T Consensus 56 ~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999887 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.+ .+|-. ...+.++|..+...| ++++|.+.|++.+.-
T Consensus 136 ~Al~----l~P~~-~~a~~~L~~~l~~~g-~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 136 TALK----LKPDF-PDAYCNLAHCLQIVC-DWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHH----HCSCC-HHHHHHHHHHHHHTT-CCTTHHHHHHHHHHH
T ss_pred HHHH----hCCCC-hHHHhhhhhHHHhcc-cHHHHHHHHHHHHHh
Confidence 9998 44432 345568999999997 999999999877654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-08 Score=76.39 Aligned_cols=112 Identities=12% Similarity=0.046 Sum_probs=63.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++....+++...|.++.++..+|..+...|++++|++..++++.++|+++.+... ..|++++|+..+++
T Consensus 56 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 56 GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 555566666666665555556666666666666666666666666666666665554443 45666666666666
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.... +|. ....+..+|.++...| ++++|++.|++.+..
T Consensus 136 ~~~~----~~~-~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 136 ALGL----RPN-EGKVHRAIAFSYEQMG-RHEEALPHFKKANEL 173 (186)
T ss_dssp HHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhc----Ccc-chHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Confidence 5552 111 1233345565655554 666666666555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-07 Score=78.40 Aligned_cols=113 Identities=10% Similarity=0.001 Sum_probs=99.7
Q ss_pred CC-ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 1 MG-RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G-~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
.| +.+.+....++++...|.++.++..+|..+...|++++|++..+++++++|++..+... ..|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 36 78899999999999999999999999999999999999999999999999998877766 799999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++... +|. ....+-.+|..++..| ++++|+..|++.+..
T Consensus 183 ~~al~~----~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 183 SQALSI----APE-DPFVMHEVGVVAFQNG-EWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHTT----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHh----CCC-ChHHHHHHHHHHHHcc-cHHHHHHHHHHHHHH
Confidence 999883 332 1244557999999997 999999999998875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=8.7e-08 Score=83.78 Aligned_cols=76 Identities=17% Similarity=0.045 Sum_probs=39.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.+....++++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..+++
T Consensus 47 ~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (388)
T 1w3b_A 47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555544333 34444444444444
Q ss_pred ch
Q 026999 76 CS 77 (229)
Q Consensus 76 ~~ 77 (229)
..
T Consensus 127 al 128 (388)
T 1w3b_A 127 AL 128 (388)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.1e-08 Score=77.78 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=121.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 115 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115 (243)
T ss_dssp ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3778888889999999999999999999999999999999999999999999999888776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
+.....+. + ...+..+|.+++..| ++++|+..|++.+... +. .......-+.++.+. | +
T Consensus 116 ~~~~~~~~-~----~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~---~-------~ 174 (243)
T 2q7f_A 116 KALRAGME-N----GDLFYMLGTVLVKLE-QPKLALPYLQRAVELN--EN---DTEARFQFGMCLANE---G-------M 174 (243)
T ss_dssp HHHHHTCC-S----HHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHHHH---T-------C
T ss_pred HHHHhCCC-C----HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC--Cc---cHHHHHHHHHHHHHc---C-------C
Confidence 99874333 1 234567999999997 9999999999988662 11 122222222222221 1 2
Q ss_pred HHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 155 LKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 155 W~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
+++-...+..-.. .+..+..-...+.++...|+.+.+.+.++...+.
T Consensus 175 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 2222222222111 1111122233355667788888887777766554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-07 Score=80.15 Aligned_cols=186 Identities=9% Similarity=-0.006 Sum_probs=119.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4788888999999998888888888899999999999999999999999999998887766 6888888888888
Q ss_pred HchhhccCCCCcc----------------------------------------------hhhhHHHHHHHHHhCCCCHHH
Q 026999 75 ECSSTWSSCSSFM----------------------------------------------YTHNWWHVALCYLEGHSPMRK 108 (229)
Q Consensus 75 ~~~~~w~~~~~~~----------------------------------------------~~H~~WHlAL~~l~~gg~~d~ 108 (229)
+.....+...... ....+..+|.++...| ++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g-~~~~ 235 (368)
T 1fch_A 157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDK 235 (368)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-CHHH
Confidence 7765333211111 1234556888888886 8888
Q ss_pred HHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCC
Q 026999 109 VLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGE 187 (229)
Q Consensus 109 Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~ 187 (229)
|+..|++.+... ++ ....+..-+.++.+ ..++++-...+..-.. .+..+..-.....++...|+
T Consensus 236 A~~~~~~al~~~--~~---~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 236 AVDCFTAALSVR--PN---DYLLWNKLGATLAN----------GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHHHC--TT---CHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC--cC---CHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 888888877652 11 12122222222221 1123333333333211 12212222233556667788
Q ss_pred cHHHHHHHHHHHHHh
Q 026999 188 VSKAEDLLKGLKSRH 202 (229)
Q Consensus 188 ~~~~~~ll~~~~~~~ 202 (229)
.+.+.+.+...-+..
T Consensus 301 ~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 301 HREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 877777666655543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=77.32 Aligned_cols=114 Identities=9% Similarity=0.022 Sum_probs=92.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 26 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 105 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999887766 6899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
++...-+. ....+...-.+..++..| ++++|++.|.+...
T Consensus 106 ~a~~~~p~---~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 106 TVVKVKPH---DKDAKMKYQECNKIVKQK-AFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHSTT---CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHH-HHHHHHHcccchHH
Confidence 99873222 112333344555577776 99999999976543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-07 Score=82.45 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=64.5
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++...++++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. .+|++++|+..+++
T Consensus 79 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 158 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 778888888888888888888888888888888888888888888888888888877766 68888888888887
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
+..
T Consensus 159 al~ 161 (365)
T 4eqf_A 159 WIK 161 (365)
T ss_dssp HHH
T ss_pred HHH
Confidence 755
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-06 Score=74.28 Aligned_cols=185 Identities=8% Similarity=-0.038 Sum_probs=128.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++++..++
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988877 7999999999999
Q ss_pred HchhhccCCCCcchhhhHH----------HHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhh
Q 026999 75 ECSSTWSSCSSFMYTHNWW----------HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 144 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~W----------HlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l 144 (229)
++....+. + ...+.++ -.|..++..| ++++|++.|++.+... ++ .......+...+-....
T Consensus 213 ~a~~~~~~-~--~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 213 ECLKLDQD-H--KRCFAHYKQVKKLNKLIESAEELIRDG-RYTDATSKYESVMKTE--PS---VAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHCTT-C--HHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--CS---SHHHHHHHHHHHHHHHH
T ss_pred HHHhhCcc-c--hHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC--CC---chHHHHHHHHHHHHHHH
Confidence 99874443 1 1222222 3488888987 9999999999988762 22 12112222222222222
Q ss_pred cCCcccccccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 145 RGELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 145 ~G~~v~vg~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
. ..+++.-...+..-.. .+..+..=.....++...|+.+.+.+.++..-+
T Consensus 284 ~------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 284 K------DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp H------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H------ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1234444333333221 222223333446677788888877776665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-07 Score=77.60 Aligned_cols=180 Identities=9% Similarity=-0.026 Sum_probs=125.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred HchhhccCCCC---cchhhh------------HHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHH
Q 026999 75 ECSSTWSSCSS---FMYTHN------------WWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL 139 (229)
Q Consensus 75 ~~~~~w~~~~~---~~~~H~------------~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLL 139 (229)
+... .+| - .... ++.+|..+...| ++++|++.|++.+... +. .......-+.++
T Consensus 96 ~~~~----~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~~~ 164 (359)
T 3ieg_A 96 KVLK----SNPSEQE-EKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVC--VW---DAELRELRAECF 164 (359)
T ss_dssp HHHT----SCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHH
T ss_pred HHHh----cCCcccC-hHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC--CC---chHHHHHHHHHH
Confidence 9988 333 1 1112 233478889987 9999999999988762 11 122222222222
Q ss_pred HHHhhcCCcccccccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 140 LRVYVRGELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 140 wRL~l~G~~v~vg~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
.++ .+++.-...+..-.. .+..+..=.....++...|+.+.+.+.+...-+.
T Consensus 165 ~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 165 IKE----------GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHT----------TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHC----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 221 234444444433221 2222222233355566778877777666555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=88.64 Aligned_cols=114 Identities=10% Similarity=0.049 Sum_probs=100.6
Q ss_pred CCChhHHHHHHHhhCCCCCC--chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~--~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~ 72 (229)
.|+.+.++...++++...|. ++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 36788999999999999998 89999999999999999999999999999999999988877 79999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
++++... +|- ....+..+|.++...| ++++|++.|++.+...
T Consensus 270 ~~~al~~----~p~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 270 YTRALEI----QPG-FIRSRYNLGISCINLG-AYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHH----CTT-CHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHhc----CCC-chHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 9999883 332 1345667999999997 9999999999988763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.2e-08 Score=80.58 Aligned_cols=114 Identities=7% Similarity=0.031 Sum_probs=97.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh-------HHH------hhCCHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS-------QHA------HDCCFK 67 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA-------~Ha------~~Gr~~ 67 (229)
+|+.+.++...++++...|.++.++..+|.++...|++++|++..+++++++|+++.. +.. ..|+++
T Consensus 55 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 134 (228)
T 4i17_A 55 IKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE 134 (228)
T ss_dssp TTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence 5899999999999999999999999999999999999999999999999999999832 332 699999
Q ss_pred HHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCH---------------------------HHHHHHHHhhchh
Q 026999 68 EAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPM---------------------------RKVLEIYDNHIWK 119 (229)
Q Consensus 68 egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~---------------------------d~Al~~yd~~i~~ 119 (229)
+|+..++++.. .+|- .....+-.+|.+++..| +. ++|+..|++.+..
T Consensus 135 ~A~~~~~~al~----~~p~~~~~~~~~~l~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 135 KAEENYKHATD----VTSKKWKTDALYSLGVLFYNNG-ADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHTT----SSCHHHHHHHHHHHHHHHHHHH-HHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----cCCCcccHHHHHHHHHHHHHHH-HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999988 4443 01245567899988886 77 8899999888765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.7e-07 Score=73.21 Aligned_cols=187 Identities=13% Similarity=0.038 Sum_probs=102.8
Q ss_pred CCChhHHHHHHHhhCCCCCCch----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi 70 (229)
+|+.+.++....+++. .|.++ .++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+
T Consensus 50 ~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 50 LAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp TTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHH
Confidence 3667777777777776 33322 336677777777777777777777777777777766655 577777777
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHH-HHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcC-Cc
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVA-LCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRG-EL 148 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlA-L~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G-~~ 148 (229)
..++++... +|. ..-.+..+| .++.. + ++++|++.|++.+... ++ .......-+.++..+.-.. .+
T Consensus 129 ~~~~~al~~----~~~-~~~~~~~l~~~~~~~-~-~~~~A~~~~~~a~~~~--p~---~~~~~~~~~~~~~~~~~~~~~~ 196 (272)
T 3u4t_A 129 QYMEKQIRP----TTT-DPKVFYELGQAYYYN-K-EYVKADSSFVKVLELK--PN---IYIGYLWRARANAAQDPDTKQG 196 (272)
T ss_dssp HHHGGGCCS----SCC-CHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHS--TT---CHHHHHHHHHHHHHHSTTCSSC
T ss_pred HHHHHHhhc----CCC-cHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHhC--cc---chHHHHHHHHHHHHcCcchhhH
Confidence 777777762 332 223445677 55444 3 7777777777766552 11 1222233333333331100 00
Q ss_pred ccccccHHHHHHHHHhhhhccccchhhHHH--HHHHhcCCCcHHHHHHHHHHHHH
Q 026999 149 DVFGNRLKVLADCVADQANWYLECHLDLLI--LWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 149 v~vg~rW~~la~~~~~~~~~~~~~F~d~H~--~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
..-..++...+......+.......+++. ...+...|+.+.+.+.++..-+.
T Consensus 197 -~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 197 -LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp -TTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 00124455544443322211112234444 44456678888777666655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=7.4e-08 Score=78.67 Aligned_cols=111 Identities=10% Similarity=0.003 Sum_probs=53.7
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~--LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.++...++++...|.++.++..+|..+...|++++|++..+++++ .+|+++.+... ..|++++|+..+
T Consensus 85 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 85 MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555 44444444333 355555555555
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
++.... +|. ....+..+|..++..| ++++|+..|++.+.
T Consensus 165 ~~~~~~----~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 165 EKSLRL----NRN-QPSVALEMADLLYKER-EYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHHH----CSC-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHHHhc----Ccc-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 555441 111 1122334555555544 55555555554443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.2e-08 Score=73.52 Aligned_cols=94 Identities=13% Similarity=0.037 Sum_probs=80.7
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHH
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW 93 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~W 93 (229)
..+..+...|..+...|+|++|++..++|++++|+++.++.. ..|++++|+..++++.. .+|. ....+.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~-~~~~~~ 76 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE----KDPN-FVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCC-cHHHHH
Confidence 345667788899999999999999999999999999988777 79999999999999988 3433 234566
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|.++...| ++++|+..|++.+..
T Consensus 77 ~lg~~~~~~~-~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 77 RKATAQIAVK-EYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHh
Confidence 8999999997 999999999988875
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.9e-08 Score=80.10 Aligned_cols=113 Identities=8% Similarity=0.047 Sum_probs=99.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.+... ..|++++|+..++
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+....-+. ....+..+|..++..| ++++|++.|++.+..
T Consensus 150 ~~~~~~~~-----~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 150 RAVELNEN-----DTEARFQFGMCLANEG-MLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHCTT-----CHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHH
T ss_pred HHHHhCCc-----cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 99873322 1235567999999987 999999999988776
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.9e-08 Score=77.22 Aligned_cols=114 Identities=15% Similarity=0.100 Sum_probs=96.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....++++. ++.++..+|.++...|++++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 19 ~~~~~~A~~~~~~a~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 95 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQDP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95 (213)
T ss_dssp TTCHHHHHHHHHTSSSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHH
Confidence 48899999999999733 67899999999999999999999999999999999988776 7999999999999
Q ss_pred HchhhccCCCC----------c--chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSS----------F--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~----------~--~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++...-+. ++ + .....+..+|.+++..| ++++|++.|++.+.-
T Consensus 96 ~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 96 EALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-EWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHcc-CHHHHHHHHHHHHHc
Confidence 99874433 11 0 12245668999999997 999999999998876
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-08 Score=91.72 Aligned_cols=112 Identities=12% Similarity=0.047 Sum_probs=71.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++....++++..+|+++.++..+|..+...|++++|++..++|++++|+++.++.. .+|++++|+..+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677788888888888888888888888888888888888888888888888888777666 67888888888888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+... +|- ..-.+-.+|.+++..| ++++|++.|++.+..
T Consensus 83 al~~----~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 83 ASDA----APE-HPGIALWLGHALEDAG-QAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhc----CCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 8773 222 1233446888888876 888888888877765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.1e-08 Score=76.59 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=84.2
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
.+.++..+..+|..+...|+|++|++..+++++++|+++.++.. ..|++++|+..+++++. .+|. ....
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~-~~~~ 81 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV----VDPK-YSKA 81 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT-CHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCC-CHHH
Confidence 44577888999999999999999999999999999999988777 79999999999999988 3333 2356
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
|..+|.+++.+| ++++|++.|++.+...
T Consensus 82 ~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 82 WSRLGLARFDMA-DYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Confidence 668999999997 9999999999988763
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.1e-08 Score=79.49 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=90.8
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
.+.+.....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++++.
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444444888889999999999999999999999999999999999877766 7999999999999998
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.. +|. ....+..+|.++...| ++++|+..|++.+..
T Consensus 201 ~~----~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 201 EK----DPN-FVRAYIRKATAQIAVK-EYASALETLDAARTK 236 (258)
T ss_dssp HH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred Hh----CHH-HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 83 332 2345667999999997 999999999988765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-08 Score=83.10 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=99.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++...++++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..+++
T Consensus 152 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999999999988776 79999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+... +|. ....+..+|.+++..| ++++|++.|++.+..
T Consensus 232 a~~~----~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 232 ALDI----NPG-YVRVMYNMAVSYSNMS-QYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHc----CCC-CHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 9873 322 2346678999999997 999999999988776
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-07 Score=82.86 Aligned_cols=197 Identities=10% Similarity=0.037 Sum_probs=133.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4888999999999999999999999999999999999999999999999999999887776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc-hhhhhhHHHHHHHHhhcCCc-cccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH-PEVYLNALGLLLRVYVRGEL-DVFG 152 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~-~~~~~Da~sLLwRL~l~G~~-v~vg 152 (229)
+.....+. + ...+-.+|.++...| ++++|++.|++.+...-....... ...+..-+.++.++.-.+.. .. .
T Consensus 369 ~~~~~~~~-~----~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 441 (537)
T 3fp2_A 369 ETKLKFPT-L----PEVPTFFAEILTDRG-DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD-E 441 (537)
T ss_dssp HHHHHCTT-C----THHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CC-H
T ss_pred HHHHhCCC-C----hHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhh-H
Confidence 99884333 1 234456899999997 999999999998765321111000 01112223333333111100 00 1
Q ss_pred ccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 026999 153 NRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSK 204 (229)
Q Consensus 153 ~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~ 204 (229)
.++++-......-.. ++..+..-.....++...|+.+.+.+.++..-+....
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 344444444443221 2222333344567788899988888877776665433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-08 Score=81.89 Aligned_cols=112 Identities=10% Similarity=0.020 Sum_probs=88.5
Q ss_pred CChhHHHHHHHhhCCC----CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 2 G~~~~~~~~~~ralp~----~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
|+.+.++....+++.. .|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 5667788888888775 24567788888888999999999999999999999998887776 6889999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.++++... +|. ....+..+|.+++..| ++++|++.|++.+..
T Consensus 99 ~~~~al~~----~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 99 AFDSVLEL----DPT-YNYAHLNRGIALYYGG-RDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHH----CTT-CTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhc----Ccc-ccHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 99988873 322 1234556888888886 899999999888765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=77.90 Aligned_cols=77 Identities=18% Similarity=0.107 Sum_probs=43.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++....+++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..+++
T Consensus 57 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 57 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555554444 45555555555555
Q ss_pred chh
Q 026999 76 CSS 78 (229)
Q Consensus 76 ~~~ 78 (229)
+..
T Consensus 137 a~~ 139 (275)
T 1xnf_A 137 FYQ 139 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.4e-07 Score=79.09 Aligned_cols=182 Identities=10% Similarity=-0.013 Sum_probs=124.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. .+|++++|+..++
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred HchhhccCCCCcch----hh----------hHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHH
Q 026999 75 ECSSTWSSCSSFMY----TH----------NWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 140 (229)
Q Consensus 75 ~~~~~w~~~~~~~~----~H----------~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLw 140 (229)
+... .+|... .+ .++.+|..++..| ++++|+..|++.+... +. .......-+.++.
T Consensus 119 ~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 119 KVLK----SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG-DYTAAIAFLDKILEVC--VW---DAELRELRAECFI 188 (450)
T ss_dssp HHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHH
T ss_pred HHHh----cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC--CC---ChHHHHHHHHHHH
Confidence 9987 333211 11 1455688888987 9999999999888652 11 1222333333332
Q ss_pred HHhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 141 RVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 141 RL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
++ |. ..+-.+.+-..... .+.. +..=...+.++...|+.+.+.+.+..+...
T Consensus 189 ~~---g~---~~~A~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 189 KE---GE---PRKAISDLKAASKL-KNDN--TEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HT---TC---GGGGHHHHHHHHHH-HCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HC---CC---HHHHHHHHHHHHHh-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 21 12212222222221 1111 222223355677788888887777766543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.8e-09 Score=99.75 Aligned_cols=112 Identities=11% Similarity=-0.064 Sum_probs=100.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.++++...++++..+|+++.++..+|.++...|+|++|++..++||+++|+++.++.. .+|++++ +..++
T Consensus 446 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 3889999999999999999999999999999999999999999999999999999988877 7999999 99999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.. .+|-. .-.|..+|.+++.+| ++++|++.|++.+..
T Consensus 525 ~al~----~~P~~-~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 525 TVWS----TNDGV-ISAAFGLARARSAEG-DRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHH----HCTTC-HHHHHHHHHHHHHTT-CHHHHHHHHHTSCTT
T ss_pred HHHH----hCCch-HHHHHHHHHHHHHcC-CHHHHHHHHHhhccc
Confidence 9987 44432 235567999999997 999999999998765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-08 Score=80.01 Aligned_cols=78 Identities=14% Similarity=-0.037 Sum_probs=75.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++..+|.++.++..+|.++...|+|++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 49 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999998887 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 129 ~al~ 132 (151)
T 3gyz_A 129 LVIQ 132 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.3e-07 Score=81.97 Aligned_cols=181 Identities=9% Similarity=-0.032 Sum_probs=128.8
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCH-HHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM-SDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~-d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
+.++....+.....|.++.++..+|..+...|+| ++|++..++||+++|+++.++.. .+|++++|+..++++.
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666788999999999999999999 99999999999999999988887 7999999999999999
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhC---------CCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhh-cCC
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEG---------HSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV-RGE 147 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~---------gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l-~G~ 147 (229)
. .+|- . ..+-.+|..+... | ++++|++.|++.+... ++ .......-..++.++.+ .|.
T Consensus 165 ~----~~p~-~-~~~~~lg~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~--p~---~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 165 T----HCKN-K-VSLQNLSMVLRQLQTDSGDEHSR-HVMDSVRQAKLAVQMD--VL---DGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp T----TCCC-H-HHHHHHHHHHTTCCCSCHHHHHH-HHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred h----hCCC-H-HHHHHHHHHHHHhccCChhhhhh-hHHHHHHHHHHHHHhC--CC---CHHHHHHHHHHHHHHHHhhcc
Confidence 8 4554 2 5556799999998 8 9999999999988762 22 23334444444444422 222
Q ss_pred cccccccHHHHHHHHHhhhh-cc---ccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 148 LDVFGNRLKVLADCVADQAN-WY---LECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 148 ~v~vg~rW~~la~~~~~~~~-~~---~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
+ ..++++-...+..-.. ++ ..+..=.....++...|+.+.+.+.++..-+
T Consensus 233 ~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 233 N---PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp C---HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c---cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 2456665555554332 33 3333334446677788888877766655443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6e-08 Score=90.55 Aligned_cols=114 Identities=5% Similarity=-0.162 Sum_probs=101.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+++....++++..+|+++.++..+|..+...|++++|++..++|++++|+++.++.. .+|++++|+..++
T Consensus 36 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 115 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115 (568)
T ss_dssp HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3889999999999999999999999999999999999999999999999999999887776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhC---CCCHHHHHHHHHhhchhh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEG---HSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~---gg~~d~Al~~yd~~i~~~ 120 (229)
++... +|- ....+..++.++... | ++++|++.|++.+...
T Consensus 116 ~al~~----~p~-~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 116 RAHQL----LPE-EPYITAQLLNWRRRLCDWR-ALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHH----CTT-CHHHHHHHHHHHHHTTCCT-THHHHHHHHHHHHHHT
T ss_pred HHHHh----CCC-CHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHhcC
Confidence 99883 332 124556799999998 7 9999999999988773
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.5e-08 Score=84.75 Aligned_cols=112 Identities=10% Similarity=0.050 Sum_probs=98.2
Q ss_pred CChhHHHHHHHhhCCCCCC--chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~--~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
|+.+.++....+++...|. ++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6778899999999999998 88999999999999999999999999999999999988777 799999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++... +|- ....+..+|.+++..| ++++|+..|++.+..
T Consensus 275 ~~al~~----~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 275 RRALEL----QPG-YIRSRYNLGISCINLG-AHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHH----CTT-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHh----CCC-cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 999873 332 1244567999999997 999999999988775
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.77 E-value=7.3e-08 Score=78.70 Aligned_cols=117 Identities=13% Similarity=0.168 Sum_probs=94.9
Q ss_pred CCChhHHHHHHHhhCCC--------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~--------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L--------nP~dawA~Ha--- 61 (229)
+|+.+.++....+++.. .|....++..+|.++...|++++|++..++|+++ +|+.+.++..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 48888999999988864 4667789999999999999999999999999999 4555555554
Q ss_pred ---hhCCHHHHHHHHHHchhhccCC----CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSC----SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~----~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..|++++|+..++++....... +|. ....+..+|.+++..| ++++|+..|++.+..
T Consensus 136 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPN-VAKTKNNLASCYLKQG-KYQDAETLYKEILTR 198 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH-HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 6999999999999998743221 222 3456667999999997 999999999998864
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.9e-08 Score=76.56 Aligned_cols=113 Identities=9% Similarity=0.036 Sum_probs=97.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHh-CCHHHHHHHHHHHHh--hCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-GQMSDAEEAAKKGLK--INKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~-g~~d~Ae~~a~rAL~--LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
.|+.+.++...++++...|.++.++..+|..+... |++++|++..+++++ .+|+++.++.. ..|++++|+.
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 48899999999999999999999999999999999 999999999999999 56665666555 7999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++.... +|. ....+..+|.+++..| ++++|++.|++.+..
T Consensus 135 ~~~~~~~~----~~~-~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 135 YLKRSLAA----QPQ-FPPAFKELARTKMLAG-QLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHH----STT-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----CCC-CchHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 99999873 222 1345667999999997 999999999998876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-07 Score=70.38 Aligned_cols=96 Identities=7% Similarity=-0.045 Sum_probs=82.8
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
.+.++..+..+|..+...|+|++|++..+++++++|+++.++.. ..|++++|+..++++... +|. ....
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~-~~~~ 79 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQ-SVKA 79 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-CHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----Cch-hHHH
Confidence 46678889999999999999999999999999999999988777 799999999999999883 332 2345
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|..+|.+++..| ++++|+..|.+.+..
T Consensus 80 ~~~l~~~~~~~~-~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 80 HFFLGQCQLEME-SYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 567999999997 999999999988865
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.3e-08 Score=77.11 Aligned_cols=112 Identities=15% Similarity=-0.008 Sum_probs=90.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~l 73 (229)
.|+.+++....++++..+|+++.++..+|.++...|++++|++..+++++++| ++..... .+++..+++..+
T Consensus 19 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~ 97 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRL 97 (176)
T ss_dssp TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHH
Confidence 48899999999999999999999999999999999999999999999999999 7754433 223344578888
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++... +|-. .-.+-.+|.++...| ++++|++.|++.+..
T Consensus 98 ~~al~~----~P~~-~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 98 EQELAA----NPDN-FELACELAVQYNQVG-RDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHH----STTC-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHh----CCCC-HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHh
Confidence 888772 3321 123346899999987 999999999988876
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.3e-08 Score=89.08 Aligned_cols=111 Identities=11% Similarity=0.027 Sum_probs=70.9
Q ss_pred CCh-hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hh---------CC
Q 026999 2 GRP-DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HD---------CC 65 (229)
Q Consensus 2 G~~-~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~---------Gr 65 (229)
|+. ++++...++++..+|.++.++..+|.++...|++++|++..++|++++|+ +.++.. .. |+
T Consensus 116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~ 194 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH 194 (474)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh
Confidence 566 67777777777777777777777777777777777777777777777776 444333 34 66
Q ss_pred HHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhC--------CCCHHHHHHHHHhhchh
Q 026999 66 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG--------HSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 66 ~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~--------gg~~d~Al~~yd~~i~~ 119 (229)
+++|+..++++...-+. ....|..+|.+++.. | ++++|++.|++.+..
T Consensus 195 ~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 195 VMDSVRQAKLAVQMDVL-----DGRSWYILGNAYLSLYFNTGQNPK-ISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHhhccccc-hHHHHHHHHHHHHHh
Confidence 77777777776652222 122344566666665 5 677777777666654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.9e-08 Score=76.83 Aligned_cols=112 Identities=9% Similarity=-0.046 Sum_probs=76.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHH-HHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS-LLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~-L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~l 73 (229)
.|+.+.++...++++...| ++.++..++.. +.+.+...+|++..+++++++|+++.++.. ..|++++|+..+
T Consensus 53 ~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 53 TKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp TTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4777888888888877777 66665555532 333344455777888888888888777766 678888888888
Q ss_pred HHchhhccCCCCcc-hhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 74 EECSSTWSSCSSFM-YTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 74 e~~~~~w~~~~~~~-~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
++..+ .+|-. ....+..++..+...| ++++|+..|++.|.
T Consensus 132 ~~~l~----~~p~~~~~~a~~~l~~~~~~~g-~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 132 WNILK----VNLGAQDGEVKKTFMDILSALG-QGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHT----TCTTTTTTHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHH----hCcccChHHHHHHHHHHHHHhC-CCCcHHHHHHHHHH
Confidence 88776 33321 1234556777777776 78888888876654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-08 Score=75.26 Aligned_cols=89 Identities=10% Similarity=-0.046 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHH
Q 026999 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 98 (229)
Q Consensus 25 ~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~ 98 (229)
...+|..+.+.|++++|++..++|++++|+++.++.. ..|++++|+..++++.. .+|-.+ -.+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~-~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDPKDI-AVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCH-HHHHHHHHH
Confidence 4456777899999999999999999999999988877 79999999999999988 444322 355679999
Q ss_pred HHhCCCCHHHHHHHHHhhchh
Q 026999 99 YLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 99 ~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+...| ++++|++.|++.+..
T Consensus 95 ~~~~g-~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEH-NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHH-HHHHHHHHHHHHHC-
T ss_pred HHHcC-CHHHHHHHHHHHHHh
Confidence 99997 999999999998875
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.6e-07 Score=82.60 Aligned_cols=112 Identities=7% Similarity=0.049 Sum_probs=83.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++....+++...|.+..++..++..+..+|++++|++..+++++++|+++.++.. ..|++++|+..+++
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556666666666666667777788888888888888888888888888888888766665 68888888888888
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....-+. + ...|..++..|...| ++++|+++|++.+..
T Consensus 433 ~~~~~~~-~----~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 433 AARLFQG-T----HLPYLFLGMQHMQLG-NILLANEYLQSSYAL 470 (597)
T ss_dssp HHHTTTT-C----SHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHhCcc-c----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 7763222 1 233445777777876 888888888887754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-07 Score=91.02 Aligned_cols=112 Identities=10% Similarity=-0.045 Sum_probs=98.1
Q ss_pred CCChhHHHHHHHhhC--------CCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCH
Q 026999 1 MGRPDLCFDIIHQVL--------PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCF 66 (229)
Q Consensus 1 ~G~~~~~~~~~~ral--------p~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~ 66 (229)
.|+.+++++..++++ ..+|++..++..+|..+.+.|+|++|++..+++++++|+++.++.. .+|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 478899999999999 8889999999999999999999999999999999999999888776 79999
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++|+..++++.. .+|-. .-.+..+|.++..+| ++++ ++.|++.+..
T Consensus 484 ~~A~~~~~~al~----l~P~~-~~~~~~lg~~~~~~g-~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 484 DSATKHFTEVLD----TFPGE-LAPKLALAATAELAG-NTDE-HKFYQTVWST 529 (681)
T ss_dssp HHHHHHHHHHHH----HSTTC-SHHHHHHHHHHHHHT-CCCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCCC-hHHHHHHHHHHHHcC-ChHH-HHHHHHHHHh
Confidence 999999999988 34321 234457999999997 9999 9999998876
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.73 E-value=7e-08 Score=80.88 Aligned_cols=118 Identities=10% Similarity=0.022 Sum_probs=100.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999887776 7999999999999
Q ss_pred HchhhccCCCCcc-------hhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFM-------YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~-------~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++...-+...... ....|-.++.++...| ++++|..+|++.+..
T Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 265 RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN-RPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT-CHHHHHHHTTCCSHH
T ss_pred HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh
Confidence 9977443311000 2346667999999997 999999999877665
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.3e-07 Score=81.83 Aligned_cols=185 Identities=8% Similarity=-0.031 Sum_probs=129.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++...|.+...+..++.++...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999887776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCc--hhhhhhHHHHHHHHhhcCCccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH--PEVYLNALGLLLRVYVRGELDVFG 152 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~--~~~~~Da~sLLwRL~l~G~~v~vg 152 (229)
+....-+. + .-.|..++..+...| ++++|+++|++.+.........+. ...+..-+.++.+ .|
T Consensus 466 ~~~~~~~~-~----~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~---~g------ 530 (597)
T 2xpi_A 466 SSYALFQY-D----PLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK---LK------ 530 (597)
T ss_dssp HHHHHCCC-C----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH---TT------
T ss_pred HHHHhCCC-C----hHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH---hc------
Confidence 99873322 2 234557999999987 999999999998775211000011 1111222222222 22
Q ss_pred ccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 153 NRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 153 ~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
++++-...+..-.. ++..+-.=.....++...|+.+.+.+.++.+-+.
T Consensus 531 -~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 531 -MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp -CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 23333333322111 1222233345566788899999888887776654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-07 Score=67.27 Aligned_cols=97 Identities=8% Similarity=-0.044 Sum_probs=82.3
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCc-chhh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSF-MYTH 90 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~-~~~H 90 (229)
.|+++.++..+|..+...|++++|+...+++++++|+++.+... ..|++++|+..++++... +|. ....
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~ 77 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV----IEDEYNKD 77 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----SCCTTCHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CcccchHH
Confidence 46677777888889999999999999999999999999887766 799999999999999883 322 0234
Q ss_pred hHHHHHHHHHhC-CCCHHHHHHHHHhhchh
Q 026999 91 NWWHVALCYLEG-HSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHlAL~~l~~-gg~~d~Al~~yd~~i~~ 119 (229)
.+..+|.+++.. | ++++|++.+.+.+..
T Consensus 78 ~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 78 VWAAKADALRYIEG-KEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHTTCSS-CSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHhhc
Confidence 667899999998 8 999999999988876
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.5e-08 Score=72.62 Aligned_cols=99 Identities=9% Similarity=0.095 Sum_probs=80.7
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCC--cchhhh
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSS--FMYTHN 91 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~--~~~~H~ 91 (229)
+.+.++-.+|-.+...|+|++|++..++||+++|+++.++.. .+|++++|+..+++++..-+...+ ...+..
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 345567788889999999999999999999999999988776 799999999999999764333221 112335
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+..+|.++...| ++++|++.|.+.+..
T Consensus 86 ~~~lg~~~~~~~-~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQN-DLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 667999999997 999999999998865
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.6e-08 Score=74.53 Aligned_cols=78 Identities=9% Similarity=0.076 Sum_probs=75.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.++++....+++..+|.++.++..+|.++...|++++|++..++||+++|+++.++.. ..|++++|+..++
T Consensus 26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988877 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 106 ~al~ 109 (126)
T 4gco_A 106 DALQ 109 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9988
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=7.4e-08 Score=69.70 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=83.0
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHN 91 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~ 91 (229)
.|.++..+..+|..+...|++++|++..+++++++|+++.+... ..|++++|+..+++.... +|. ....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~ 82 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----DPA-YSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-CHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc----Ccc-CHHH
Confidence 45677888899999999999999999999999999999887766 799999999999999873 332 2345
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 92 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 92 ~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
+..+|.++...| ++++|+..|++.+...
T Consensus 83 ~~~~~~~~~~~~-~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 83 YGRMGLALSSLN-KHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHhcC
Confidence 667999999997 9999999999998873
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=5.5e-08 Score=73.48 Aligned_cols=78 Identities=10% Similarity=-0.016 Sum_probs=74.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++...++++..+|.++.++..+|.++...|++++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 110 ~al~ 113 (121)
T 1hxi_A 110 AWLL 113 (121)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9987
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-06 Score=78.41 Aligned_cols=189 Identities=10% Similarity=0.036 Sum_probs=127.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4788889999999999999999999999999999999999999999999999999887776 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCccccccc
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 154 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~r 154 (229)
+.....+. + ...+..+|..++..| ++++|+..|++.+...- .. ........+...+-++.+.-.. .| +
T Consensus 363 ~~~~~~~~-~----~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~--~~-~~~~~~~~~~~~l~~~~~~~~~--~~-~ 430 (514)
T 2gw1_A 363 EAKRKFPE-A----PEVPNFFAEILTDKN-DFDKALKQYDLAIELEN--KL-DGIYVGIAPLVGKATLLTRNPT--VE-N 430 (514)
T ss_dssp HHHHHSTT-C----SHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH--TS-SSCSSCSHHHHHHHHHHHTSCC--TT-H
T ss_pred HHHHHccc-C----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhh--cc-chHHHHHHHHHHHHHHHhhhhh--cC-C
Confidence 99874333 1 234567999999997 99999999998877532 11 1110011122222222222000 01 2
Q ss_pred HHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 155 LKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 155 W~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
++.-...+..-.. .+..+..-.....++...|+.+.+.+.++..-+.
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3333333322111 2222222334566777889988887777666554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-07 Score=67.95 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=83.5
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhh
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTH 90 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H 90 (229)
..|.....+..+|..+...|++++|++..+++++++|+++.++.. .+|++++|+..++++... +|. ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~-~~~ 85 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL----EPT-FIK 85 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----CTT-CHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCC-chH
Confidence 456778899999999999999999999999999999999887776 799999999999999883 322 234
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 91 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 91 ~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+..+|.+++..| ++++|++.|++.+..
T Consensus 86 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 86 GYTRKAAALEAMK-DYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 5667999999997 999999999988765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=77.44 Aligned_cols=112 Identities=7% Similarity=0.055 Sum_probs=95.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh----HHH------hhCCHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS----QHA------HDCCFKEAV 70 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA----~Ha------~~Gr~~egi 70 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++ .|+++.. +.. ..|++++|+
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 48999999999999999999999999999999999999999999999999 6655544 222 799999999
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..++++...-+. ....+-.+|.+++..| ++++|+..|++.+..
T Consensus 95 ~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 95 QQYQAAVDRDTT-----RLDMYGQIGSYFYNKG-NFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHSTT-----CTHHHHHHHHHHHHTT-CHHHHHHHHGGGCCS
T ss_pred HHHHHHHhcCcc-----cHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhc
Confidence 999999883322 1235567999999997 999999999998875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-07 Score=78.20 Aligned_cols=116 Identities=10% Similarity=0.007 Sum_probs=97.1
Q ss_pred CCChhHHHHHHHhhCCCCCC---chhHHHHHHHHHHH--------hCCHHHHHHHHHHHHhhCCCChhhH----------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLE--------LGQMSDAEEAAKKGLKINKHDCWSQ---------- 59 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~---~~~~~g~~AF~L~e--------~g~~d~Ae~~a~rAL~LnP~dawA~---------- 59 (229)
+|+.+.++...++++..+|+ .+.++..+|.++.. .|++++|++..+++++++|+++.+.
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 58899999999999987664 56789999999999 9999999999999999999997765
Q ss_pred -------HH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhC----------CCCHHHHHHHHHhh
Q 026999 60 -------HA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG----------HSPMRKVLEIYDNH 116 (229)
Q Consensus 60 -------Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~----------gg~~d~Al~~yd~~ 116 (229)
.. .+|++++|+..+++.....+. ++. ..-.+..+|.+|..+ | ++++|+..|++.
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~-~~~a~~~l~~~~~~~g~~~~~~~~~~-~~~~A~~~~~~~ 221 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD-TPW-ADDALVGAMRAYIAYAEQSVRARQPE-RYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STT-HHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-Cch-HHHHHHHHHHHHHHhcccchhhcccc-hHHHHHHHHHHH
Confidence 22 689999999999999886665 322 234556788888866 6 899999999998
Q ss_pred chh
Q 026999 117 IWK 119 (229)
Q Consensus 117 i~~ 119 (229)
+..
T Consensus 222 ~~~ 224 (261)
T 3qky_A 222 LQI 224 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-07 Score=74.07 Aligned_cols=119 Identities=9% Similarity=-0.083 Sum_probs=90.6
Q ss_pred CCChhHHHHHHHhhCC------CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh---CCCCh----hhHHH------
Q 026999 1 MGRPDLCFDIIHQVLP------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI---NKHDC----WSQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp------~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L---nP~da----wA~Ha------ 61 (229)
.|+.+.++....+++. ..+....++..+|..+...|++++|++..++|+++ .|+++ .++..
T Consensus 39 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 39 MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 4788888888888888 34456678889999999999999999999999999 55444 22222
Q ss_pred hhCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
..|++++|+..++++.......+. ......+..+|..++..| ++++|++.|++.+.-.
T Consensus 119 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK-NLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 689999999999998765444332 222345567899999987 9999999998877663
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=8.1e-07 Score=77.32 Aligned_cols=118 Identities=10% Similarity=-0.070 Sum_probs=92.1
Q ss_pred CCChhHHHHHHHhhCCCCCCc-h----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH------HH------hh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE-D----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ------HA------HD 63 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~-~----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~------Ha------~~ 63 (229)
.|+.+.++...++++...|.+ + .++..+|..+...|++++|++..++|+++.|...... .. .+
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 488999999999988866543 2 3678889999999999999999999999988664331 11 79
Q ss_pred CCHHHHHHHHHHchhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~---~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++++..++++.......+. ......+..+|..++..| ++++|++.|++.+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEV 164 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 9999999999999775543221 112334456899999997 999999999998865
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.1e-08 Score=84.58 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=60.5
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++....++++..+|+++.++..+|-++...|++++|++..+++++++|+..+.... .+|+.+++++.+++
T Consensus 131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~ 210 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQ 210 (287)
T ss_dssp TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHH
Confidence 445555555555555555555555555555555555555555555555555533322221 34444445555555
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+...-+. . .-.+-.+|..++..| ++++|++.|.+.+..
T Consensus 211 al~~~P~---~--~~~~~~la~~l~~~g-~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 211 QVAENPE---D--AALATQLALQLHQVG-RNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHCTT---C--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCCc---c--HHHHHHHHHHHHHcc-cHHHHHHHHHHHHhc
Confidence 5442221 1 123346888888876 888888888888776
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.6e-07 Score=79.12 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=88.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--------hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--------HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--------~~Gr~~egi~~ 72 (229)
.|+.++++....+ |.+..++..++.++...|++++|++..+++++++|++....-+ ..|++++|+..
T Consensus 114 ~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp TTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3777888888777 6777888889999999999999999999999999998744332 24899999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++.....+. ....+..+|.+++..| ++++|++.|++.+..
T Consensus 189 ~~~~l~~~p~-----~~~~~~~la~~~~~~g-~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 189 FQEMADKCSP-----TLLLLNGQAACHMAQG-RWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHSCC-----CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-----cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9999884332 1345567999999997 999999999998876
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-07 Score=75.53 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=89.6
Q ss_pred CCChhHHHHHHHhhCCCCCCc-------hhHHHHHHHHHHHhCCHHHHHHHHHHHHh-----------------------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE-------DFIFGILAFSLLELGQMSDAEEAAKKGLK----------------------- 50 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~-------~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~----------------------- 50 (229)
+|+.+.++....+++...|.+ +.++..+|..+...|++++|.+..++++.
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Confidence 588999999999999877655 68999999999999999999999999999
Q ss_pred ---hCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 51 ---INKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 51 ---LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++|+++.++.. ..|++++|+..++++....+. + ...+..+|.+++..| ++++|+..|++.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~----~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-D----ARGYSNRAAALAKLM-SFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-c----HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 55555555554 688888888888888773332 1 234556888888886 888888888887765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.7e-08 Score=73.08 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=71.8
Q ss_pred CCChhHHHHHHHhhCCC---CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPY---NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~---~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
+|+.+.++...++++.. +|.++.++..+|.++...|+|++|++..+++++++|+++.++.. ..|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 48889999999999998 68889999999999999999999999999999999999988777 7999999999
Q ss_pred HHHHchhhccC
Q 026999 72 FMEECSSTWSS 82 (229)
Q Consensus 72 ~le~~~~~w~~ 82 (229)
.++++...-+.
T Consensus 83 ~~~~al~~~p~ 93 (117)
T 3k9i_A 83 LLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhCCC
Confidence 99999874443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-07 Score=72.93 Aligned_cols=81 Identities=12% Similarity=-0.002 Sum_probs=75.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++..+|.++.++..+|.++...|+|++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988776 7999999999999
Q ss_pred Hchhhcc
Q 026999 75 ECSSTWS 81 (229)
Q Consensus 75 ~~~~~w~ 81 (229)
++...-+
T Consensus 111 ~al~~~p 117 (142)
T 2xcb_A 111 SARALAA 117 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHhCC
Confidence 9987433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.6e-07 Score=66.79 Aligned_cols=100 Identities=11% Similarity=0.056 Sum_probs=86.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+.+++
T Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYK 104 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999887766 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCH
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 106 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~ 106 (229)
++...-+. + ...+..++.++...| ++
T Consensus 105 ~~~~~~p~-~----~~~~~~l~~~~~~~~-~~ 130 (131)
T 2vyi_A 105 KALELDPD-N----ETYKSNLKIAELKLR-EA 130 (131)
T ss_dssp HHHHHSTT-C----HHHHHHHHHHHHHHT-TC
T ss_pred HHHhcCcc-c----hHHHHHHHHHHHHHh-cC
Confidence 99884322 1 234456888888775 54
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-07 Score=67.86 Aligned_cols=98 Identities=8% Similarity=0.015 Sum_probs=82.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+....++++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+.+++
T Consensus 29 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ 108 (133)
T ss_dssp TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCC
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGH 103 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~g 103 (229)
+.... +|. ..-.+-.++.+++..|
T Consensus 109 ~~~~~----~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 109 KALDL----DSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHH----CGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHh----CCC-chHHHHHHHHHHHHhc
Confidence 99873 322 1123334666666543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=73.78 Aligned_cols=82 Identities=11% Similarity=0.013 Sum_probs=76.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+++.....+++...|.++.++..+|.++...|+|++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988877 7999999999999
Q ss_pred HchhhccC
Q 026999 75 ECSSTWSS 82 (229)
Q Consensus 75 ~~~~~w~~ 82 (229)
++...-+.
T Consensus 114 ~al~~~p~ 121 (148)
T 2vgx_A 114 LAQELIAN 121 (148)
T ss_dssp HHHHHHTT
T ss_pred HHHHHCcC
Confidence 99874443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-06 Score=75.45 Aligned_cols=184 Identities=8% Similarity=-0.030 Sum_probs=123.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.++...++++...|.++.++..+|.++...|++++|++..+++++++|+++.++.. ..|++++|+..+++
T Consensus 157 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999988777 79999999999999
Q ss_pred chhhccCCCCcchhhh----------HHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhc
Q 026999 76 CSSTWSSCSSFMYTHN----------WWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR 145 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~----------~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~ 145 (229)
+...-+. ++ ..+. .--++..++..| ++++|++.|++.+... ++ .......+...+-.+...
T Consensus 237 ~~~~~p~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~--p~---~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 237 CLKLDQD-HK--RCFAHYKQVKKLNKLIESAEELIRDG-RYTDATSKYESVMKTE--PS---IAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHCTT-CH--HHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC--CS---SHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCC-hH--HHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC--Cc---chHHHHHHHHHHHHHHHH
Confidence 9873332 11 1111 011278888887 9999999999988752 22 111112222222222111
Q ss_pred CCcccccccHHHHHHHHHhhhh-ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 146 GELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 146 G~~v~vg~rW~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
-.++++-......-.. .+..+-.=...+.++...|+.+.+.+.++..-+
T Consensus 308 ------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 308 ------DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp ------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ------CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1234444444433211 122111222235666778888877776665544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-06 Score=64.58 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh---HHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS---QHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 94 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA---~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH 94 (229)
.+...|..+...|+|++|++..+++++.+|++++. +.. .+|++++|+..+++.....+. ++. ..-.+..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~-~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDK-AAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STT-HHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-Ccc-cHHHHHH
Confidence 35567888999999999999999999999999953 332 799999999999999885554 222 2344567
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|.++...| ++++|+..|++.+..
T Consensus 82 la~~~~~~g-~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEG-KNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 999999997 999999999988876
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-06 Score=62.20 Aligned_cols=92 Identities=13% Similarity=0.232 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHH
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 95 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHl 95 (229)
+..+..+|..+...|++++|++..++++.++|+++.+... ..|++++|+.++++....-+. ....+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----NAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----cHHHHHHH
Confidence 6778889999999999999999999999999999887766 789999999999999873222 12345679
Q ss_pred HHHHHhCCCCHHHHHHHHHhhchh
Q 026999 96 ALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 96 AL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|..+...| ++++|+..|++.+..
T Consensus 84 a~~~~~~~-~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 84 GNAYYKQG-DYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHh
Confidence 99999997 999999999988765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=73.21 Aligned_cols=78 Identities=10% Similarity=0.051 Sum_probs=72.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHH-HHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAV-QFM 73 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi-~~l 73 (229)
+|+.+.+.....+++..+|+++.++..+|.++...|++++|+...++|++++|+++.++.. .+|+.++++ .|+
T Consensus 44 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 44 AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999998887 689988766 568
Q ss_pred HHchh
Q 026999 74 EECSS 78 (229)
Q Consensus 74 e~~~~ 78 (229)
+++..
T Consensus 124 ~~al~ 128 (150)
T 4ga2_A 124 ERAAK 128 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=77.27 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=95.4
Q ss_pred CCChhHHHHHHHhhCCC--------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~--------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L--------nP~dawA~Ha--- 61 (229)
+|+.+.++....+++.. .|....++..+|.++...|++++|++..++++++ +|+.+.++..
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 48889999999999876 4667789999999999999999999999999999 6766666665
Q ss_pred ---hhCCHHHHHHHHHHchhhccC---------------------------------------------CCCcchhhhHH
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSS---------------------------------------------CSSFMYTHNWW 93 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~---------------------------------------------~~~~~~~H~~W 93 (229)
.+|++++|+..++++...... .++. ....+.
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 256 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT-VNTTLR 256 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH-HHHHHH
Confidence 799999999999999764221 1111 234677
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|.+|...| ++++|+..|++.+..
T Consensus 257 ~la~~~~~~g-~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 257 SLGALYRRQG-KLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 8999999997 999999999887753
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=69.18 Aligned_cols=78 Identities=8% Similarity=0.028 Sum_probs=74.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|.++...|+|++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 17 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 96 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988776 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 97 ~al~ 100 (126)
T 3upv_A 97 AART 100 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.1e-07 Score=64.94 Aligned_cols=98 Identities=6% Similarity=0.075 Sum_probs=81.0
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcc--hhhhH
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFM--YTHNW 92 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~--~~H~~ 92 (229)
.+..+..+|..+...|++++|+...++++.++|+++.+... ..|++++++.+++++...-+..++.. ....+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45667788889999999999999999999999999887766 79999999999999977444322111 14567
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 93 WHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 93 WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..+|.++...| ++++|++.|++.+..
T Consensus 83 ~~la~~~~~~~-~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEE-KYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 78999999997 999999999988875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-07 Score=81.96 Aligned_cols=113 Identities=15% Similarity=0.071 Sum_probs=96.3
Q ss_pred CCChhHHHHHHHhhCCCCCCc---------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE---------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~---------------~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---- 61 (229)
.|+.+.++....+++...|.+ ..++..+|.++...|+|++|++.+++||+++|+++.++..
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA 239 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 378899999999999998887 5899999999999999999999999999999999998877
Q ss_pred --hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHH-HHHHHhhchh
Q 026999 62 --HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV-LEIYDNHIWK 119 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~A-l~~yd~~i~~ 119 (229)
..|++++|+..++++.. .+|-. .-.+..++.++...| +++++ ..+|.+.+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~----l~P~~-~~a~~~l~~~~~~~~-~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 240 HLAVNDFELARADFQKVLQ----LYPNN-KAAKTQLAVCQQRIR-RQLAREKKLYANMFER 294 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HCSSC-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH----HCCCC-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 79999999999999988 33332 235567999999887 99998 5577666544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-06 Score=70.88 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=95.3
Q ss_pred CCChhHHHHHHHhhCC--------CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--------CCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLP--------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp--------~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln--------P~dawA~Ha--- 61 (229)
.|+.+.++....+++. ..+....++..+|..+...|++++|++..++++++. |..+.+...
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4888999999999988 356778899999999999999999999999999994 554555544
Q ss_pred ---hhCCHHHHHHHHHHchhhccCC---CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSC---SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~---~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..|++++|+..++++....... ++......+..+|.+++..| ++++|++.|++.+..
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG-KYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 7999999999999998754221 11123456667999999997 999999999998875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-07 Score=80.24 Aligned_cols=115 Identities=8% Similarity=-0.020 Sum_probs=97.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.++++...++++...|+..+.....+..+.+.++.++|++..+++++++|+++.++.. .+|++++|++.++
T Consensus 164 ~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 164 LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4899999999999999999877888788888999999999999999999999999998887 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+..+.-+. +.....+-.++..+...| +.++|+..|++.+..
T Consensus 244 ~~l~~~p~---~~~~~a~~~l~~~~~~~g-~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 244 GHLRXDLT---AADGQTRXTFQEILAALG-TGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHCTT---GGGGHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcccc---cccchHHHHHHHHHHHcC-CCCcHHHHHHHHHHH
Confidence 99883322 212344557888888886 999999999887764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=7.9e-07 Score=63.15 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHH
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 95 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHl 95 (229)
+..+..+|..+...|++++|+...++++.++|+++.++.. ..|++++|+..+++.... +|. ....+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL----KPD-WGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----Ccc-cHHHHHHH
Confidence 4566778888999999999999999999999999887765 799999999999999873 322 23455679
Q ss_pred HHHHHhCCCCHHHHHHHHHhhchh
Q 026999 96 ALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 96 AL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|.++...| ++++|++.|++.+..
T Consensus 79 a~~~~~~~-~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 79 AAALEFLN-RFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHc
Confidence 99999997 999999999888765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.56 E-value=7.4e-08 Score=89.65 Aligned_cols=108 Identities=10% Similarity=0.080 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+++....++++...|.++.++..+|.++.+.|+|++|++..++|++++|+++.++.. .+|++++|+..++
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988877 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHH--HHhCCCCHHHHHHHHH
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALC--YLEGHSPMRKVLEIYD 114 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~--~l~~gg~~d~Al~~yd 114 (229)
++...-+. + .. .+-.++.+ ++..| ++++|++.|+
T Consensus 99 ~al~~~p~-~--~~--~~~~l~~~~~~~~~g-~~~~A~~~~~ 134 (477)
T 1wao_1 99 TVVKVKPH-D--KD--AKMKYQECNKIVKQK-AFERAIAGDE 134 (477)
T ss_dssp HHHHHSTT-C--TT--HHHHHHHHHHHHHHH-HHCCC-----
T ss_pred HHHHhCCC-C--HH--HHHHHHHHHHHHHHH-HHHHHhcccc
Confidence 99874333 1 12 23346666 77876 9999999998
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.8e-07 Score=73.52 Aligned_cols=116 Identities=9% Similarity=0.022 Sum_probs=94.3
Q ss_pred CChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--------h--------
Q 026999 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--------H-------- 62 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--------~-------- 62 (229)
|+.+++....++++...|.++ .++..+|.++...|+|++|++..+++++++|+++.+.-+ +
T Consensus 18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~ 97 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQ 97 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 888999999999997777654 578899999999999999999999999999999874333 1
Q ss_pred -----------hCCHHHHHHHHHHchhhccCCCCcchh-------------hhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 63 -----------DCCFKEAVQFMEECSSTWSSCSSFMYT-------------HNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 63 -----------~Gr~~egi~~le~~~~~w~~~~~~~~~-------------H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+|++++|+..+++.+...+... .... -....+|.+++..| ++++|+..|++.|.
T Consensus 98 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~-~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 98 GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ-YTTDATKRLVFLKDRLAKYEYSVAEYYTERG-AWVAVVNRVEGMLR 175 (225)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCTTCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred hhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHH
Confidence 5789999999999998776633 2111 01145788899987 99999999999887
Q ss_pred h
Q 026999 119 K 119 (229)
Q Consensus 119 ~ 119 (229)
.
T Consensus 176 ~ 176 (225)
T 2yhc_A 176 D 176 (225)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.56 E-value=9.9e-07 Score=75.94 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=89.1
Q ss_pred hHHHHHHHhhCC-CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh-hHHH------hhCCHHHHHHHHHHc
Q 026999 5 DLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 5 ~~~~~~~~ralp-~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-A~Ha------~~Gr~~egi~~le~~ 76 (229)
++++...+|++. ..|++..++..++..++..|++++|++..++||+++|+++. ++.. .+|++++++..++++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 899999999999 69999999999999999999999999999999999999875 4443 689999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHh---CCCCHHHHHHHHHhhchh
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLE---GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~---~gg~~d~Al~~yd~~i~~ 119 (229)
.. .+|. ..+.| ++...++ .| ++++|+++|++.+..
T Consensus 161 ~~----~~p~-~~~~~--~~~a~~~~~~~~-~~~~A~~~~~~al~~ 198 (308)
T 2ond_A 161 RE----DART-RHHVY--VTAALMEYYCSK-DKSVAFKIFELGLKK 198 (308)
T ss_dssp HT----STTC-CTHHH--HHHHHHHHHTSC-CHHHHHHHHHHHHHH
T ss_pred Hh----cCCC-CHHHH--HHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 87 3432 23443 3444443 55 999999999999876
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.1e-07 Score=67.25 Aligned_cols=97 Identities=6% Similarity=-0.069 Sum_probs=81.8
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hhhHHH------hhCCHHHHHHHHHHchhhccCCCCcc
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFM 87 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---awA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~ 87 (229)
..+.+...+...|..+...|+|++|++..+++++++|++ +.++.. ..|++++++..+++.... +|.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~- 97 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----DGG- 97 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TSC-
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----Ccc-
Confidence 356778889999999999999999999999999999997 555554 799999999999999873 332
Q ss_pred hhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 88 YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 88 ~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....+..+|.++...| ++++|+..|++.+..
T Consensus 98 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEKLG-RLDQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Confidence 1345567999999997 999999999998876
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.9e-07 Score=70.94 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=76.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++..+|.++.++..+|.++...|+|++|++..++||+++|+++.++.. ..|++++|+..++
T Consensus 24 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYE 103 (164)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred HchhhccC
Q 026999 75 ECSSTWSS 82 (229)
Q Consensus 75 ~~~~~w~~ 82 (229)
++...-+.
T Consensus 104 ~al~~~p~ 111 (164)
T 3sz7_A 104 KGIEAEGN 111 (164)
T ss_dssp HHHHHHSS
T ss_pred HHHHhCCC
Confidence 99884444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-07 Score=68.39 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=90.3
Q ss_pred CCChhHHHHHHHhhCCCCCCc------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------hhhHHH------h
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHA------H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~------~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d------awA~Ha------~ 62 (229)
.|+.+.++....+++...+.. ..++..+|..+...|++++|++..++++++.|+. +.+... .
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 478888888888888764422 2578889999999999999999999999987664 223332 7
Q ss_pred hCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 63 DCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|++++|+..++++.......+. ......+..+|..++..| ++++|++.|++.+.-
T Consensus 102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEI 158 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 89999999999998765544332 223456667999999987 999999999887765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.53 E-value=8.1e-07 Score=76.48 Aligned_cols=113 Identities=5% Similarity=-0.075 Sum_probs=95.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchh-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---h----hCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---H----DCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~-~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---~----~Gr~~egi~~ 72 (229)
.|+.+.++..-++++...|.++. ++..++-.+...|++++|++..++|++++|++...... + .|++++|+..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 48899999999999999998875 78888888999999999999999999999998665544 2 6999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++++....+. ...+|-.++.++...| ++++|+.+|++.+..
T Consensus 192 ~~~al~~~p~-----~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 192 FELGLKKYGD-----IPEYVLAYIDYLSHLN-EDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHTT-----CHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCC-----cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 9999884333 1345567888888887 999999999998874
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.52 E-value=6e-07 Score=73.20 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=77.1
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-------C-----hhhHHH------hhCCHHHHHHHHHHchhhccC
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------D-----CWSQHA------HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~-------d-----awA~Ha------~~Gr~~egi~~le~~~~~w~~ 82 (229)
.++.+...|..+...|+|++|++..++||+++|+ + ++++.. ..||++|++...++++..|+.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3466777888899999999999999999999999 3 234444 799999999999999983211
Q ss_pred C---CCcchhhhH----HHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 83 C---SSFMYTHNW----WHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 83 ~---~~~~~~H~~----WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
- +|- ..-.| ...|.++..+| ++++|+..|++.|.-.
T Consensus 90 ~~e~~pd-~~~A~~~~~~~rG~aL~~lg-r~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 90 RGELNQD-EGKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HCCTTST-HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred cccCCCc-hHHHHHHHHHhHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence 1 432 22344 58999999997 9999999999988763
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-06 Score=73.99 Aligned_cols=199 Identities=12% Similarity=0.026 Sum_probs=124.5
Q ss_pred CCChhHHHHHHHhhCCCCCCch----hHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChhhHHH------hhC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHA------HDC 64 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L------nP~dawA~Ha------~~G 64 (229)
.|+.+.++...++++...|.++ .++..+|..+...|++++|++..++++++ +|..+.++.. ..|
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4889999999999999888776 57889999999999999999999999999 5666666555 799
Q ss_pred CHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCC-----------------HHHHHHHHHhhchhhccCCCC
Q 026999 65 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP-----------------MRKVLEIYDNHIWKELEKPDA 126 (229)
Q Consensus 65 r~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~-----------------~d~Al~~yd~~i~~~~~~~~~ 126 (229)
++++|+..++++.......+. ......+..+|..|...| + +++|++.|.+.+.-... .+
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~-~~- 217 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD-LG- 217 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HT-
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH-cC-
Confidence 999999999998775433221 123446678999999987 9 99999999887654211 10
Q ss_pred CchhhhhhHHHHHHHHhhcCCccc-ccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 026999 127 VHPEVYLNALGLLLRVYVRGELDV-FGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHS 203 (229)
Q Consensus 127 ~~~~~~~Da~sLLwRL~l~G~~v~-vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~ 203 (229)
.......+...+-++.+.-.+.+ --.-.+..................-.....++...|+.+.+.+.++.......
T Consensus 218 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 218 -DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 11112222222222222211100 00122222222222111122122333446677788888887777765554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.9e-07 Score=79.36 Aligned_cols=118 Identities=8% Similarity=-0.058 Sum_probs=84.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+|+.+.++....+++...|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4777788888888887777777777788888888888888888888888888887766655 6788888888888
Q ss_pred HchhhccCCCCc-chhhhHHHHHHHHHh---CCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSF-MYTHNWWHVALCYLE---GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~-~~~H~~WHlAL~~l~---~gg~~d~Al~~yd~~i~~ 119 (229)
++....+..+.. .....+..+|.+++. .| ++++|+..|++.+..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC-CHHHHHHHHHHHHHh
Confidence 776644432211 001245567777777 76 788888888777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.52 E-value=9.3e-07 Score=63.21 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=80.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|..+...|++++|+...+++++++|+++.++.. ..|++++|+.+++
T Consensus 22 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (125)
T 1na0_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999877665 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLE 101 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~ 101 (229)
+.... +|.. .-.+..++..+..
T Consensus 102 ~~~~~----~~~~-~~~~~~l~~~~~~ 123 (125)
T 1na0_A 102 KALEL----DPNN-AEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHH----CTTC-HHHHHHHHHHHHH
T ss_pred HHHHh----CCCc-HHHHHHHHHHHHh
Confidence 99873 3321 2233456666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=75.45 Aligned_cols=95 Identities=7% Similarity=-0.049 Sum_probs=81.5
Q ss_pred CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhH
Q 026999 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 92 (229)
Q Consensus 19 ~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~ 92 (229)
|.++..+..+|..+...|+|++|++..++|++++|+++.++.. ..|++++|+..++++.. .+|. ....+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~-~~~~~ 75 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQ-SVKAH 75 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTT-CHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCC-CHHHH
Confidence 4566788889999999999999999999999999999988877 79999999999999988 3432 22345
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 93 WHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 93 WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..+|..++.+| ++++|++.|.+.+..
T Consensus 76 ~~lg~~~~~~g-~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 76 FFLGQCQLEME-SYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 57999999997 999999999988765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-07 Score=82.92 Aligned_cols=101 Identities=10% Similarity=-0.061 Sum_probs=83.8
Q ss_pred hhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---------------hhhHHH------hhCCHHHHHH
Q 026999 13 QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 13 ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---------------awA~Ha------~~Gr~~egi~ 71 (229)
+++...|.++.++..+|..+...|+|++|++..++|++++|++ +.++.. .+|++++|+.
T Consensus 138 ~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 217 (336)
T 1p5q_A 138 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217 (336)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333456677899999999999999999999999999999999 455554 7999999999
Q ss_pred HHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 72 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 72 ~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+++++.. +|- ....+..+|.+|+.+| ++++|+..|++.+..
T Consensus 218 ~~~~al~~----~p~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 218 SCNKALEL----DSN-NEKGLSRRGEAHLAVN-DFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----CCC-cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 99999983 332 1234557999999997 999999999998876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.49 E-value=9.9e-07 Score=72.52 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=95.5
Q ss_pred CCChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHH------------------hCCHHHHHHHHHHHHhhCCCChhhH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLE------------------LGQMSDAEEAAKKGLKINKHDCWSQ 59 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e------------------~g~~d~Ae~~a~rAL~LnP~dawA~ 59 (229)
+|+.+.++...++++..+|+++ +++.++|.++.+ .|++++|.+..+++++..|+++.+.
T Consensus 54 ~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 54 NADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred cCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 4889999999999998888766 478888888876 5799999999999999999999875
Q ss_pred HH-----------------------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026999 60 HA-----------------------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 116 (229)
Q Consensus 60 Ha-----------------------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~ 116 (229)
-+ .+|++++|+..+++.+...+. ++. ..-.+-.++.++..+| ++++|++.++..
T Consensus 134 ~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~-~~~a~~~l~~~~~~~g-~~~~A~~~~~~l 210 (225)
T 2yhc_A 134 DATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQA-TRDALPLMENAYRQMQ-MNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHH-HHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCc-cHHHHHHHHHHHHHcC-CcHHHHHHHHHH
Confidence 32 689999999999999987766 332 2234557999999997 999999999765
Q ss_pred chh
Q 026999 117 IWK 119 (229)
Q Consensus 117 i~~ 119 (229)
+..
T Consensus 211 ~~~ 213 (225)
T 2yhc_A 211 AAN 213 (225)
T ss_dssp HHC
T ss_pred Hhh
Confidence 543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.48 E-value=8e-07 Score=69.89 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=89.4
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChhhHHH------hhCCHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHA------HDCCFKEA 69 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L------nP~dawA~Ha------~~Gr~~eg 69 (229)
|+...+....+.+....+..+.++..+|..+...|++++|++..++|+++ .|..+.++.. .+|+++++
T Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 85 (203)
T 3gw4_A 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85 (203)
T ss_dssp -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77788887333333323367889999999999999999999999999994 4444555544 79999999
Q ss_pred HHHHHHchhhccCCC--CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 70 VQFMEECSSTWSSCS--SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 70 i~~le~~~~~w~~~~--~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+..++++.......+ +......+..+|..++..| ++++|++.|++.+..
T Consensus 86 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 999999987654433 1134556778999999997 999999999887754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.3e-07 Score=76.87 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=63.1
Q ss_pred CChhHHHHHHHhhCCCC------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------hhHHH------hh
Q 026999 2 GRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHA------HD 63 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da------wA~Ha------~~ 63 (229)
|+.+++.....+++... +..+.++..+|.++...|++++|+...++|+++.|... .++.. .+
T Consensus 51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 55566666666655542 12366666666666666666666666666666665432 12221 23
Q ss_pred -CCHHHHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 -CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 -Gr~~egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|+..++++....+..+.. .....+-.+|.+++.+| +|++|+..|++.+..
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKS 187 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 66666666666665544432211 01122334566666664 666666666666654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.7e-07 Score=66.41 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=75.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++...|.++.++..+|.++...|++++|+...+++++++|+++.++.. ..|++++|+..++
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred HchhhccC
Q 026999 75 ECSSTWSS 82 (229)
Q Consensus 75 ~~~~~w~~ 82 (229)
++...-+.
T Consensus 102 ~a~~~~p~ 109 (137)
T 3q49_B 102 RAYSLAKE 109 (137)
T ss_dssp HHHHHHHH
T ss_pred HHHHHChh
Confidence 99874333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=65.57 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=79.5
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHH
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 94 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WH 94 (229)
.+..+..+|..+...|++++|.+..+++++++|+++.++.. ..|++++|+..++++....+. ....+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~ 86 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-----YIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----cHHHHHH
Confidence 44677888999999999999999999999999999887776 799999999999999884332 1245567
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 95 VALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 95 lAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|.++...| ++++|+..|++.+..
T Consensus 87 ~a~~~~~~~-~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 87 RAASNMALG-KFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 999999997 999999999998875
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.3e-07 Score=62.34 Aligned_cols=81 Identities=11% Similarity=0.012 Sum_probs=74.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--ChhhHHH------hh-CCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHA------HD-CCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~--dawA~Ha------~~-Gr~~egi~ 71 (229)
.|+.+.+.....+++...|.++.++..+|..+...|++++|++..+++++++|+ ++.++.. .. |++++|+.
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEI 98 (112)
T ss_dssp SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999 8877666 68 99999999
Q ss_pred HHHHchhhcc
Q 026999 72 FMEECSSTWS 81 (229)
Q Consensus 72 ~le~~~~~w~ 81 (229)
.+++....-+
T Consensus 99 ~~~~~~~~~p 108 (112)
T 2kck_A 99 AEARAKLEHH 108 (112)
T ss_dssp HHHHHGGGCC
T ss_pred HHHHHhhccc
Confidence 9999987443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.7e-05 Score=64.73 Aligned_cols=107 Identities=10% Similarity=0.012 Sum_probs=82.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCChhhHHH------h----hCCH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHA------H----DCCF 66 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e----~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~----~Gr~ 66 (229)
.|+.+.+....++++. ++++.++..+|..+.. .|++++|.+..++|++++ ++.+... . .|++
T Consensus 19 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~ 94 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT 94 (273)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH
Confidence 3677888888888877 6677788888888888 889999999999998886 5555554 4 8889
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~~ 119 (229)
++|+.+++++.. .+. ...+-.+|.+|.. .+ ++++|++.|++.+..
T Consensus 95 ~~A~~~~~~a~~----~~~---~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 95 NKALQYYSKACD----LKY---AEGCASLGGIYHDGKVVTR-DFKKAVEYFTKACDL 143 (273)
T ss_dssp HHHHHHHHHHHH----TTC---HHHHHHHHHHHHHCSSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH----cCC---ccHHHHHHHHHHcCCCccc-CHHHHHHHHHHHHhc
Confidence 999999988877 231 1233458888887 76 899999999887764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-06 Score=74.26 Aligned_cols=193 Identities=11% Similarity=0.141 Sum_probs=121.8
Q ss_pred CCChhHHHHHHHhhCCCCC-------CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------hhHHH------
Q 026999 1 MGRPDLCFDIIHQVLPYNQ-------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~-------~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da------wA~Ha------ 61 (229)
+|+.+.++....+++...+ ....++..+|.++...|+|++|++..++|+++.|+.. .+.+.
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5888899999999887533 2346889999999999999999999999999977554 23333
Q ss_pred hhCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHH
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 140 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLw 140 (229)
.+|++++|+..++++.......+. ......+-.+|..++..| ++++|+..|++.+.-.. +.+ ..........|-
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~-~~~---~~~~~~~~~~l~ 310 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG-KIDKAHEYHSKGMAYSQ-KAG---DVIYLSEFEFLK 310 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-HHT---CHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH-HcC---CHHHHHHHHHHH
Confidence 799999999999999874443332 123456668999999997 99999999999887532 111 111112223333
Q ss_pred HHhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 141 RVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 141 RL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
.+...-.+ .+..+...+........+...-.-......+...|+.+.+.......-..
T Consensus 311 ~~~~~~~~---~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 311 SLYLSGPD---EEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCc---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33332211 02244444444433222221112223355566677776666555544443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.3e-06 Score=68.73 Aligned_cols=118 Identities=10% Similarity=0.131 Sum_probs=95.1
Q ss_pred CCChhHHHHHHHhhCCCCCCc----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChhhHHH------hhC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHA------HDC 64 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~----~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L------nP~dawA~Ha------~~G 64 (229)
.|+.+.++...++++...|.+ ..++..+|..+...|++++|++..++++++ .|..+.++.. ..|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 489999999999999988877 467889999999999999999999999998 4444544444 799
Q ss_pred CHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCC--------------------HHHHHHHHHhhchh
Q 026999 65 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP--------------------MRKVLEIYDNHIWK 119 (229)
Q Consensus 65 r~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~--------------------~d~Al~~yd~~i~~ 119 (229)
++++|+..++++....+..+. ......+..++..+...| + +++|++.|++.+.-
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999998765544332 223446778999999987 9 99999999887654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-05 Score=69.57 Aligned_cols=118 Identities=8% Similarity=0.014 Sum_probs=86.3
Q ss_pred CCChhHHHHHHHhhCCCC--------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh-----hHHH------
Q 026999 1 MGRPDLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~--------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-----A~Ha------ 61 (229)
.|+.++++...++++... |....++.++|.++.+.|++++|++..++++++.|.... ++..
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 488889998888888743 345678888999999999999999999999999986422 1111
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHH--HHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA--LCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlA--L~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|++++++..++++.......+...........+ ..++..| ++++|...+++.+.+
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG-DKAAAANWLRHTAKP 244 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHSCCC
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC-CHHHHHHHHHhCCCC
Confidence 69999999999999976544422111111111123 3367886 999999999988765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=78.17 Aligned_cols=118 Identities=8% Similarity=-0.045 Sum_probs=98.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++...|.++.++..+|.++...|++++|++..+++++++|+++.+... ..|++++|+..++
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999987777 7999999999999
Q ss_pred HchhhccCCCCcch-hhhHHHHHHHHHhC----------CCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMY-THNWWHVALCYLEG----------HSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~-~H~~WHlAL~~l~~----------gg~~d~Al~~yd~~i~~ 119 (229)
++...-+....... .-.+...|.++... | ++++|+..|++.+..
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE-KFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh-HHHHHHHHHHHHHHh
Confidence 99765444222211 11234567777776 7 999999999998876
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-07 Score=75.65 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=93.9
Q ss_pred CCChhHHHHHHHhhCCCC--------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~--------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L--------nP~dawA~Ha--- 61 (229)
+|+.+.++....+++... +....++..+|..+...|++++|++..++++++ +|..+.+...
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 478888999888888653 567788999999999999999999999999999 6666655554
Q ss_pred ---hhCCHHHHHHHHHHchhhccC---------------------------------------------CCCcchhhhHH
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSS---------------------------------------------CSSFMYTHNWW 93 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~---------------------------------------------~~~~~~~H~~W 93 (229)
.+|++++|+.+++++...... .+|. ....+.
T Consensus 204 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 282 (311)
T 3nf1_A 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLK 282 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHH
Confidence 799999999999999763211 1121 234667
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|.+|...| ++++|++.|++.+.-
T Consensus 283 ~la~~~~~~g-~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 283 NLGALYRRQG-KFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 8999999997 999999999988765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=3e-06 Score=60.03 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=73.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+....++++...|.++.++..+|..+...|++++|.+..+++++++|+++.++.. ..|++++|+..++
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999877666 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
+...
T Consensus 97 ~~~~ 100 (118)
T 1elw_A 97 EGLK 100 (118)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9987
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.8e-06 Score=60.34 Aligned_cols=90 Identities=13% Similarity=0.248 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 97 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL 97 (229)
++..+|..+...|++++|++..+++++++|+++.+... ..|++++++.++++.... +|. ....+..++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPR-SAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----CCC-chHHHHHHHH
Confidence 45677888999999999999999999999999887665 789999999999999873 222 1234557899
Q ss_pred HHHhCCCCHHHHHHHHHhhchh
Q 026999 98 CYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 98 ~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+...| ++++|++.|++.+..
T Consensus 78 ~~~~~~-~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 78 AYYKQG-DYDEAIEYYQKALEL 98 (136)
T ss_dssp HHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHh
Confidence 999987 999999999887765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.1e-06 Score=71.60 Aligned_cols=199 Identities=11% Similarity=-0.027 Sum_probs=124.5
Q ss_pred CCChhHHHHHHHhhCCC------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChhhHHH------h
Q 026999 1 MGRPDLCFDIIHQVLPY------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHA------H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L------nP~dawA~Ha------~ 62 (229)
+|+.+.++....+++.. .+....++..+|..+...|++++|++..++++++ .|..+.++.. .
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 37888889988888875 4567789999999999999999999999999999 5555555554 6
Q ss_pred hCC-----------------HHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCC
Q 026999 63 DCC-----------------FKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKP 124 (229)
Q Consensus 63 ~Gr-----------------~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~ 124 (229)
.|+ +++++.+++++.......+. ......+..+|..++..| ++++|++.|++.+..... .
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-~ 256 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG-DFQAAIEHHQERLRIARE-F 256 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH-H
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHh-c
Confidence 899 99999999988664433221 223446778999999997 999999999998765321 1
Q ss_pred CCCchhhhhhHHHHHHHHhhcCCcccc-cccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 026999 125 DAVHPEVYLNALGLLLRVYVRGELDVF-GNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHS 203 (229)
Q Consensus 125 ~~~~~~~~~Da~sLLwRL~l~G~~v~v-g~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~ 203 (229)
........+...+-++.+.-.+.+- -...+..................-.....++...|+.+.+.+.++.......
T Consensus 257 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 257 --GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1111122232223222222111000 0112222222221111112122333445667788998888777776655543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=5.9e-05 Score=62.67 Aligned_cols=171 Identities=12% Similarity=-0.022 Sum_probs=118.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCChhhHHH------h----hCCH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHA------H----DCCF 66 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e----~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~----~Gr~ 66 (229)
.|+.+.++...++++... ++.++..+|..+.. .+++++|++..++|++++ ++.++.. . .|++
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCH
Confidence 478889999999998774 78888899999999 999999999999999985 6666555 4 8999
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHH
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 142 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL 142 (229)
++|+.+++++.. .++. ..+..++..+.. .+ ++++|++.|++.+... .. ++...|-.+
T Consensus 131 ~~A~~~~~~a~~----~~~~---~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~-------~~----~a~~~lg~~ 191 (273)
T 1ouv_A 131 KKAVEYFTKACD----LNDG---DGCTILGSLYDAGRGTPK-DLKKALASYDKACDLK-------DS----PGCFNAGNM 191 (273)
T ss_dssp HHHHHHHHHHHH----TTCH---HHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT-------CH----HHHHHHHHH
T ss_pred HHHHHHHHHHHh----cCcH---HHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC-------CH----HHHHHHHHH
Confidence 999999999988 3422 233468999887 76 9999999999887652 12 344444455
Q ss_pred hhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhc----CCCcHHHHHHHHH
Q 026999 143 YVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALAN----TGEVSKAEDLLKG 197 (229)
Q Consensus 143 ~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~----ag~~~~~~~ll~~ 197 (229)
...|..+ ..+.+.-......-..... +-.-......+.. .++.+.+.+.++.
T Consensus 192 ~~~g~~~--~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 192 YHHGEGA--TKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHTCSS--CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHcCCCC--CccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 5556542 4456665555554332221 2222333444444 5666666555443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.36 E-value=2e-06 Score=62.94 Aligned_cols=73 Identities=12% Similarity=-0.033 Sum_probs=55.5
Q ss_pred HHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 6 ~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.++...++++..+|.++.++..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+..++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46677788888888888888888888888889999998888988888887665544 45566666655555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-06 Score=69.27 Aligned_cols=109 Identities=16% Similarity=0.012 Sum_probs=84.6
Q ss_pred CCChhHHHHHHHhhCCCCCCch----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~----------------~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--- 61 (229)
.|+.+.+.....+++...|.++ .++..+|.++...|+|++|+..++++++++|+++.++..
T Consensus 51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 130 (198)
T 2fbn_A 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV 130 (198)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4788999999999998887776 889999999999999999999999999999999988777
Q ss_pred ---hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHH-HHHHh
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL-EIYDN 115 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al-~~yd~ 115 (229)
..|++++|+.+++++... +|.. .-.+-.++.++...+ +++++. ..|..
T Consensus 131 ~~~~~~~~~~A~~~~~~al~~----~p~~-~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 182 (198)
T 2fbn_A 131 ANMYFGFLEEAKENLYKAASL----NPNN-LDIRNSYELCVNKLK-EARKKDKLTFGG 182 (198)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH----STTC-HHHHHHHHHHHHHHH-HHHC--------
T ss_pred HHHHcccHHHHHHHHHHHHHH----CCCc-HHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 799999999999999873 3321 233445777777765 677666 34433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.2e-07 Score=72.90 Aligned_cols=93 Identities=8% Similarity=0.001 Sum_probs=77.6
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----------------hhHHH------hhCCHHHHHHHHHHchh
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da----------------wA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
....+...|..+...|+|++|++..++|+++.|+++ .++.. ..|++++|+..++++..
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445777888899999999999999999999999987 45444 79999999999999988
Q ss_pred hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 79 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 79 ~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
. +|. ..-.+..+|.+++.+| ++++|++.|.+.+..
T Consensus 117 ~----~p~-~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 117 I----DKN-NVKALYKLGVANMYFG-FLEEAKENLYKAASL 151 (198)
T ss_dssp H----STT-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred h----Ccc-cHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHH
Confidence 3 332 1234557999999997 999999999998876
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-05 Score=64.85 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH------------------H----hhCCHHHHHHHHHHchhhc
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH------------------A----HDCCFKEAVQFMEECSSTW 80 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H------------------a----~~Gr~~egi~~le~~~~~w 80 (229)
-.+-..|..+...|+|++|++..+++++++|+++.++. + ..|++++|+..++++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-- 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 34556788899999999999999999999999875542 2 69999999999999988
Q ss_pred cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 81 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 81 ~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|- ..-.+..+|.+++..| ++++|+..|++.+..
T Consensus 83 --~~p~-~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 83 --KAPN-NVDCLEACAEMQVCRG-QEKDALRMYEKILQL 117 (208)
T ss_dssp --HCTT-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred --HCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Confidence 3332 1234557999999997 999999999999886
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-05 Score=68.28 Aligned_cols=118 Identities=10% Similarity=0.110 Sum_probs=94.5
Q ss_pred CCChhHHHHHHHhhCCCCCCch----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhC------CCChhhHHH------hhC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKIN------KHDCWSQHA------HDC 64 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~Ln------P~dawA~Ha------~~G 64 (229)
.|+.+.+....++++...|.++ .++..+|..+...|++++|+...++|+++. |..+.++.. ..|
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 4889999999999999888774 578889999999999999999999999983 444444443 789
Q ss_pred CHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCC--------------------HHHHHHHHHhhchh
Q 026999 65 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP--------------------MRKVLEIYDNHIWK 119 (229)
Q Consensus 65 r~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~--------------------~d~Al~~yd~~i~~ 119 (229)
++++|+..++++....+..+. ......+..+|..+...| + +++|++.|++.+.-
T Consensus 102 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999775544222 223446778999999987 9 99999999887765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.7e-06 Score=62.43 Aligned_cols=82 Identities=12% Similarity=0.006 Sum_probs=72.3
Q ss_pred CCChhHHHHHHHhhCCCCCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hhhHHH------hhCCHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHA------HDCCFKE 68 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---awA~Ha------~~Gr~~e 68 (229)
.|+.+.+.....+++..+|+++ .++..+|.++...|+|++|++..++++.++|++ +.++.. .+|++++
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~ 94 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTE 94 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHH
Confidence 4889999999999999888877 688999999999999999999999999999999 554544 7999999
Q ss_pred HHHHHHHchhhccC
Q 026999 69 AVQFMEECSSTWSS 82 (229)
Q Consensus 69 gi~~le~~~~~w~~ 82 (229)
|+..+++.....+.
T Consensus 95 A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 95 AQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999885444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-06 Score=74.03 Aligned_cols=89 Identities=12% Similarity=0.016 Sum_probs=68.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCC------hhhHHH------hhCCHHHHHHHHHHchhhccCCCCcc-hhhhHHHH
Q 026999 29 AFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFM-YTHNWWHV 95 (229)
Q Consensus 29 AF~L~e~g~~d~Ae~~a~rAL~LnP~d------awA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~-~~H~~WHl 95 (229)
+-.+...|+|++|.+..++|+++.|.. +.++.. .+|++++|+..++++.......+... ....+-.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556789999999999999999996543 333333 68999999999999988766544321 12244469
Q ss_pred HHHHHhC-CCCHHHHHHHHHhhch
Q 026999 96 ALCYLEG-HSPMRKVLEIYDNHIW 118 (229)
Q Consensus 96 AL~~l~~-gg~~d~Al~~yd~~i~ 118 (229)
|..|... | ++++|++.|++.+.
T Consensus 124 g~~~~~~lg-~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 124 GEILENDLH-DYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-CHHHHHHHHHHHHH
Confidence 9999985 7 99999999998875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.8e-06 Score=61.03 Aligned_cols=78 Identities=19% Similarity=0.154 Sum_probs=72.6
Q ss_pred CCChhHHHHHHHhhCCCCCCc---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~---~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
.|+.+.+....++++...|++ ..++..+|..+...|+|++|++..+++++++|+++.++.. ..|++++|+.
T Consensus 41 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 120 (148)
T 2dba_A 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120 (148)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 488999999999999999987 8899999999999999999999999999999999877766 7999999999
Q ss_pred HHHHchh
Q 026999 72 FMEECSS 78 (229)
Q Consensus 72 ~le~~~~ 78 (229)
++++...
T Consensus 121 ~~~~al~ 127 (148)
T 2dba_A 121 DLQRCVS 127 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=67.81 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=65.2
Q ss_pred CCChhHHHHHHHhhCCC------------------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-
Q 026999 1 MGRPDLCFDIIHQVLPY------------------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~------------------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha- 61 (229)
.|+.+.++..-.+++.. .|.+..++..+|.++...|+|++|+..+++||+++|+++.++..
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 37788888888888876 56666888899999999999999999999999999999877766
Q ss_pred -----hhCCHHHHHHHHHHchh
Q 026999 62 -----HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 62 -----~~Gr~~egi~~le~~~~ 78 (229)
..|++++|+..++++..
T Consensus 104 g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 104 AKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHh
Confidence 67888888888888876
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=66.40 Aligned_cols=78 Identities=9% Similarity=0.068 Sum_probs=70.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH-------HH------hhCCHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ-------HA------HDCCFK 67 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~-------Ha------~~Gr~~ 67 (229)
.|+.+.++..-.+++..+|.++.++..+|.++.+.|+|++|++..++||+++|++.-.. .. .+|+++
T Consensus 21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~ 100 (127)
T 4gcn_A 21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLS 100 (127)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHH
Confidence 48999999999999999999999999999999999999999999999999999885432 22 689999
Q ss_pred HHHHHHHHchh
Q 026999 68 EAVQFMEECSS 78 (229)
Q Consensus 68 egi~~le~~~~ 78 (229)
+|+.+.+++..
T Consensus 101 ~A~~~~~kal~ 111 (127)
T 4gcn_A 101 LAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.32 E-value=9.3e-06 Score=70.15 Aligned_cols=113 Identities=8% Similarity=-0.065 Sum_probs=88.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHH--HHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS--LLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~--L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~ 72 (229)
+|+.+.+....++++...|++....-..++. +...|++++|++..+++++.+|+++.++.. .+|++++|+..
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5899999999999999888876444334432 234589999999999999999999988776 79999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHH-HHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK-VLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~-Al~~yd~~i~~ 119 (229)
++++.. .+|-. ...+-+++.++...| ++++ +.+++++.+..
T Consensus 223 l~~al~----~~p~~-~~~l~~l~~~~~~~g-~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 223 LQEALD----KDSGH-PETLINLVVLSQHLG-KPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHH----HCTTC-HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHH----hCCCC-HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 999988 33321 234557999999987 7765 56788776655
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=74.74 Aligned_cols=81 Identities=11% Similarity=0.084 Sum_probs=74.7
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++...|.++.++..+|.++...|+|++|++..++|++++|+++.++.. ..|++++|+..++
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 96 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 96 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999988777 7999999999999
Q ss_pred Hchhhcc
Q 026999 75 ECSSTWS 81 (229)
Q Consensus 75 ~~~~~w~ 81 (229)
++...-+
T Consensus 97 ~al~l~p 103 (281)
T 2c2l_A 97 RAYSLAK 103 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHhCc
Confidence 9876433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.31 E-value=7.6e-05 Score=68.74 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=115.9
Q ss_pred HHHHHHHhhCC-CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh---hhHHH----hhCCHHHHHHHHHHch
Q 026999 6 LCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHA----HDCCFKEAVQFMEECS 77 (229)
Q Consensus 6 ~~~~~~~ralp-~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da---wA~Ha----~~Gr~~egi~~le~~~ 77 (229)
.++...+|++. ..|.+..++..++-.++..|++++|++..+++|+++|+++ |..-. .+|+.++++..++++.
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 89999999998 7999999999999999999999999999999999999985 33322 5899999999999998
Q ss_pred hhccCCCCcchhhhHHHHHHH-HHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHH
Q 026999 78 STWSSCSSFMYTHNWWHVALC-YLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLK 156 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~-~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~ 156 (229)
. .+|. ..+.++-.++. +...| ++++|+++|++.+... ++ .......-+.+++++ |- .++-.
T Consensus 384 ~----~~~~-~~~~~~~~a~~~~~~~~-~~~~A~~~~e~al~~~--p~---~~~~~~~~~~~~~~~---g~----~~~Ar 445 (530)
T 2ooe_A 384 E----DART-RHHVYVTAALMEYYCSK-DKSVAFKIFELGLKKY--GD---IPEYVLAYIDYLSHL---NE----DNNTR 445 (530)
T ss_dssp T----CTTC-CTHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHH--TT---CHHHHHHHHHHHTTT---TC----HHHHH
T ss_pred h----ccCC-chHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHC--CC---CHHHHHHHHHHHHhC---CC----HhhHH
Confidence 7 3333 23444444443 23465 9999999999988763 21 122223333333221 21 23455
Q ss_pred HHHHHHHhhhhccccchhhHHH--HHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 157 VLADCVADQANWYLECHLDLLI--LWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 157 ~la~~~~~~~~~~~~~F~d~H~--~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
.+.+......+.......++-. +--....|+.+.+..+.....+..
T Consensus 446 ~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 446 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5555544432211111112221 112344688887777776665544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.1e-07 Score=65.60 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCC-cchhhhHH
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWW 93 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~W 93 (229)
++..+..+|..+...|+|++|++..++|++++|+++.++.. ..|++++|+..++++...-+..++ ......+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34567788899999999999999999999999999988877 799999999999999883333211 11133556
Q ss_pred HHHHHHHhCCCCHHHHHHHHHh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDN 115 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~ 115 (229)
.++.++...| +++++++.|++
T Consensus 83 ~~~~~~~~~~-~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVG-SVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHH-CCCCCSSSSSS
T ss_pred HHHHHHHHHH-hHhhhHhHHHH
Confidence 7788888876 77777766643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-05 Score=69.35 Aligned_cols=194 Identities=12% Similarity=0.002 Sum_probs=107.8
Q ss_pred CCChhHHHHHHHhhCCCCCC------chhHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhhC--
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQ--------------------MSDAEEAAKKGLKIN-- 52 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~------~~~~~g~~AF~L~e~g~--------------------~d~Ae~~a~rAL~Ln-- 52 (229)
+|+.+.++....+++...+. ...++..+|..+...|+ +++|++..++++++.
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777665432 23477777777777887 888888888887772
Q ss_pred ----CCChhhHHH------hhCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhc
Q 026999 53 ----KHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 121 (229)
Q Consensus 53 ----P~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~ 121 (229)
|..+.+... .+|++++|+..++++.......+. ......+..+|..++..| ++++|+..|++.+....
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLAR 258 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHH
Confidence 222323332 578888888888888665444321 122335567888888886 88888888887765431
Q ss_pred cCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHh-------hhhccccchhhHHHHHHHhcCCCcHHHHHH
Q 026999 122 EKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVAD-------QANWYLECHLDLLILWALANTGEVSKAEDL 194 (229)
Q Consensus 122 ~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~-------~~~~~~~~F~d~H~~~al~~ag~~~~~~~l 194 (229)
. .+ .......+...+-++.+.-. ++++-...... ..+....+..-.....++...|+.+.+.+.
T Consensus 259 ~-~~--~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 259 Q-LK--DRAVEAQSCYSLGNTYTLLQ------DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp H-TT--CHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred h-Cc--CchHHHHHHHHHHHHHHHhC------cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 11 12112222222222222211 22222222221 111111122223345566677888887777
Q ss_pred HHHHHHHhhc
Q 026999 195 LKGLKSRHSK 204 (229)
Q Consensus 195 l~~~~~~~~~ 204 (229)
+...-+....
T Consensus 330 ~~~al~~~~~ 339 (406)
T 3sf4_A 330 AEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766655544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.9e-06 Score=75.68 Aligned_cols=112 Identities=10% Similarity=-0.029 Sum_probs=87.3
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--------------------
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------------------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------------------- 61 (229)
|+.+.+....++++...|.++.++..+|..+...|++++|++..++|++++|+++.+++.
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 556778888888888889999999999999999999999999999999999999888765
Q ss_pred -----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 -----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 -----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..+..++++..++++...-+. ..-.+..+|..+...| ++++|+..|++.+..
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~lg~~~~~~~-~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDN-----LFRVCSILASLHALAD-QYEEAEYYFQKEFSK 363 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTT-----TCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCc-----hhhhhhhHHHHHHHhc-cHHHHHHHHHHHHhc
Confidence 123466777777777662222 1223456999999997 999999999998865
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.4e-06 Score=75.20 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=86.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHH---HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----------hhCCHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF---SLLELGQMSDAEEAAKKGLKINKHDCWSQHA----------HDCCFKE 68 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF---~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----------~~Gr~~e 68 (229)
++.+++....++++..+|+++.++..++. .+...+++++|.+..++|++++|+++.+... ..|+.++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 45778999999999999988876655554 4666788899999999999999999887654 4688999
Q ss_pred HHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 69 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 69 gi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++..++++... +|. ....+-.+|.++...| ++++|+..|++.+..
T Consensus 232 a~~~~~~al~~----~~~-~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 232 GEKLVEEALEK----APG-VTDVLRSAAKFYRRKD-EPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHHHH----CSS-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----Ccc-HHHHHHHHHHHHHHcC-chHHHHHHHHHHHHh
Confidence 99999999872 332 2234457999999997 999999999998876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=74.24 Aligned_cols=118 Identities=9% Similarity=0.066 Sum_probs=94.5
Q ss_pred CCChhHHHHHHHhhCCC------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh-------hHHH------
Q 026999 1 MGRPDLCFDIIHQVLPY------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-------SQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-------A~Ha------ 61 (229)
.|+.+.++....+++.. .+..+.++..+|..+...|++++|.+..++|+++.|+... ++..
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 48899999999999875 2235688999999999999999999999999999766543 2222
Q ss_pred hhCCHHHHHHHHHHchhhccCCC-CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCS-SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~-~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..|++++|+..++++.+.....+ +......+..+|.+|...| ++++|++.|.+.+.-
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS-QYEDAIPYFKRAIAV 253 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 68999999999999976544433 2223346667999999997 999999999998874
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.4e-07 Score=66.21 Aligned_cols=81 Identities=11% Similarity=0.002 Sum_probs=64.1
Q ss_pred HhCCHHHHHHHHHHHHhh---CCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCC
Q 026999 34 ELGQMSDAEEAAKKGLKI---NKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS 104 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~L---nP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg 104 (229)
..|++++|++..++||++ +|+++.++.. .+|++++|+..++++....+. + ...+..+|.++...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~----~~~~~~l~~~~~~~g- 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-H----QALRVFYAMVLYNLG- 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C----HHHHHHHHHHHHHHT-
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-c----hHHHHHHHHHHHHcC-
Confidence 368999999999999999 5888777776 799999999999999884333 1 234457999999997
Q ss_pred CHHHHHHHHHhhchhh
Q 026999 105 PMRKVLEIYDNHIWKE 120 (229)
Q Consensus 105 ~~d~Al~~yd~~i~~~ 120 (229)
++++|++.|++.+...
T Consensus 76 ~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 76 RYEQGVELLLKIIAET 91 (117)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999998873
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-06 Score=77.67 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=92.8
Q ss_pred CCChhHHHHHHHhhCCCCCCc---------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE---------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~---------------~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---- 61 (229)
.|+...+.....+++...|.+ ..++..+|.++...|+|++|++.+++||+++|+++.++..
T Consensus 281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a 360 (457)
T 1kt0_A 281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA 360 (457)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 488999999999999988877 5899999999999999999999999999999999998877
Q ss_pred --hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHH-HHHHhhchh
Q 026999 62 --HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL-EIYDNHIWK 119 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al-~~yd~~i~~ 119 (229)
..|++++|+..++++.. .+|.. .-.+..++.++...+ +++++. .+|.+.+..
T Consensus 361 ~~~~g~~~~A~~~~~~al~----l~P~~-~~a~~~l~~~~~~~~-~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 361 QLLMNEFESAKGDFEKVLE----VNPQN-KAARLQISMCQKKAK-EHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHT----TC-----CHHHHHHHHHHHHH-HHHHHHHHHHHHC---
T ss_pred HHHccCHHHHHHHHHHHHH----hCCCC-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 79999999999999988 44432 245667999988887 888776 456555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-06 Score=70.11 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHhhCCCCCC-------ch-----hHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------CCCChhhH--
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ-------ED-----FIFGILAFSLLELGQMSDAEEAAKKGLKI-------NKHDCWSQ-- 59 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~-------~~-----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-------nP~dawA~-- 59 (229)
.|+.+.+...-.+++...|+ +. .++..+|.++...|+|++|+..+++||++ +|+++.++
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 38899999999999998887 33 39999999999999999999999999999 99999888
Q ss_pred --HH------hhCCHHHHHHHHHHchh
Q 026999 60 --HA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 60 --Ha------~~Gr~~egi~~le~~~~ 78 (229)
.. ..|+++||+..++++..
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55 79999999999999987
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=66.70 Aligned_cols=198 Identities=14% Similarity=0.028 Sum_probs=121.3
Q ss_pred CCChhHHHHHHHhhCCC------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh------hHHH------h
Q 026999 1 MGRPDLCFDIIHQVLPY------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW------SQHA------H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw------A~Ha------~ 62 (229)
.|+.+.++....+++.. .+....++..+|..+...|++++|++..++++++.|.... +... .
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 47888899888888765 3445678899999999999999999999999999876533 2222 6
Q ss_pred hCC--------------------HHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhc
Q 026999 63 DCC--------------------FKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 121 (229)
Q Consensus 63 ~Gr--------------------~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~ 121 (229)
.|+ +++++..++++.......+. ......+..+|..++..| ++++|++.|++.+....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 889 99999999888654433222 223446677999999997 99999999998876531
Q ss_pred cCCCCCchhhhhhHHHHHHHHhhc-CCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 026999 122 EKPDAVHPEVYLNALGLLLRVYVR-GELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKS 200 (229)
Q Consensus 122 ~~~~~~~~~~~~Da~sLLwRL~l~-G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 200 (229)
. .+ .......+...+-++.+. |.....-.-.+...............+..-......+...|+.+.+.+.++....
T Consensus 215 ~-~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 215 E-FG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp H-HT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h-cC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 11 111122222222222111 2110001222222222222111122223333446667788998888777766555
Q ss_pred Hh
Q 026999 201 RH 202 (229)
Q Consensus 201 ~~ 202 (229)
..
T Consensus 292 ~~ 293 (338)
T 3ro2_A 292 IA 293 (338)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.27 E-value=4.8e-05 Score=70.10 Aligned_cols=178 Identities=11% Similarity=0.018 Sum_probs=117.1
Q ss_pred HHHHHHHhhCCCCCCchhHHHHHHHHHHH-------hCCHH-------HHHHHHHHHHh-hCCCChhhHHH------hhC
Q 026999 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLE-------LGQMS-------DAEEAAKKGLK-INKHDCWSQHA------HDC 64 (229)
Q Consensus 6 ~~~~~~~ralp~~~~~~~~~g~~AF~L~e-------~g~~d-------~Ae~~a~rAL~-LnP~dawA~Ha------~~G 64 (229)
+++...++++...|.++.+...+|-.+.. .|+++ +|++..++|++ ++|+++..+.. ..|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 55667788888888888888888887775 69987 99999999997 89999877666 689
Q ss_pred CHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhh
Q 026999 65 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 144 (229)
Q Consensus 65 r~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l 144 (229)
++++++..++++.. .+|..+.-+|=.++.++...| ++++|+++|++.+... +. .....+..+-+.|+ .
T Consensus 336 ~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~Al~~~--~~---~~~~~~~~a~~~~~--~ 403 (530)
T 2ooe_A 336 KYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAE-GIKSGRMIFKKAREDA--RT---RHHVYVTAALMEYY--C 403 (530)
T ss_dssp CHHHHHHHHHHHHH----SSSSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTCT--TC---CTHHHHHHHHHHHH--H
T ss_pred CHHHHHHHHHHHhC----ccccCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcc--CC---chHHHHHHHHHHHH--H
Confidence 99999999999988 444323335556788777776 8999999999988642 11 12223322222222 1
Q ss_pred cCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 026999 145 RGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 145 ~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
.|- .++=..+.+......++....+ .+++-.+...|+.+.++.+++..-..
T Consensus 404 ~~~----~~~A~~~~e~al~~~p~~~~~~--~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 404 SKD----KSVAFKIFELGLKKYGDIPEYV--LAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp TCC----HHHHHHHHHHHHHHHTTCHHHH--HHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred cCC----hhHHHHHHHHHHHHCCCCHHHH--HHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 222 1122222222222223322112 44455567889999898888765543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.9e-06 Score=74.99 Aligned_cols=115 Identities=10% Similarity=0.016 Sum_probs=93.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC----ChhhHHH----hhCCHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH----DCWSQHA----HDCCFKEAVQF 72 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~----dawA~Ha----~~Gr~~egi~~ 72 (229)
.|+.++++...+++++..|++. .+.++|..+.+.|++++|++..++++...++ +++.... ..|+++||+++
T Consensus 115 ~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~ 193 (282)
T 4f3v_A 115 QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR 193 (282)
T ss_dssp HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3889999999999999999888 9999999999999999999999998886422 2333333 79999999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++....- .+|....-.++.+|+++.++| +.++|.++|++.+..
T Consensus 194 l~~a~~g~--~~P~~~~da~~~~glaL~~lG-r~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 194 LTEANDSP--AGEACARAIAWYLAMARRSQG-NESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHTST--TTTTTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHhcCC--CCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 99997511 103223446678999999997 999999999988876
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.2e-05 Score=67.94 Aligned_cols=118 Identities=10% Similarity=0.040 Sum_probs=92.3
Q ss_pred CCChhHHHHHHHhhCCCCC---C----chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--Ch----hhHHH------
Q 026999 1 MGRPDLCFDIIHQVLPYNQ---Q----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DC----WSQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~---~----~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~--da----wA~Ha------ 61 (229)
+|+.+.++....+++...+ + ....+..+|.++...|+|++|++..++|+++.+. +. .+.+.
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5888899999999887532 2 3467889999999999999999999999998653 22 22222
Q ss_pred hhCCHHHHHHHHHHchhhccCC-CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSC-SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~-~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
.+|++++|+..++++....... +|. ....+..+|..+...| ++++|+..|++.+.-.
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAG-QTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence 6999999999999997744422 223 2556678999999997 9999999999988763
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.23 E-value=4e-06 Score=60.72 Aligned_cols=61 Identities=11% Similarity=-0.028 Sum_probs=47.1
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
+|+++.++..+|.++...|+|++|++..+++++++|+++.++.. ..|++++|+..++++..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999998765444 45555555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.19 E-value=7.6e-07 Score=82.07 Aligned_cols=96 Identities=8% Similarity=-0.046 Sum_probs=80.6
Q ss_pred CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---------------hhhHHH------hhCCHHHHHHHHHHc
Q 026999 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHA------HDCCFKEAVQFMEEC 76 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d---------------awA~Ha------~~Gr~~egi~~le~~ 76 (229)
.|..+..+..+|..+...|+|++|+...++||+++|++ +.++.. ..|++++|+..++++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44566788889999999999999999999999999999 355444 799999999999999
Q ss_pred hhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 77 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 77 ~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+. .+|- ..-.+..+|.+|+.+| ++++|+..|++.+..
T Consensus 344 l~----~~p~-~~~a~~~~g~a~~~~g-~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 344 LG----LDSA-NEKGLYRRGEAQLLMN-EFESAKGDFEKVLEV 380 (457)
T ss_dssp HH----HSTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred Hh----cCCc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Confidence 88 3332 1345567999999997 999999999998875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.6e-06 Score=62.76 Aligned_cols=92 Identities=10% Similarity=-0.023 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhh------------------CCCChhhHHH------hhCCHHHHHHHHHHch
Q 026999 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKI------------------NKHDCWSQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 22 ~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L------------------nP~dawA~Ha------~~Gr~~egi~~le~~~ 77 (229)
...+...|..+...|+|++|+...++||++ +|.++.++.. ..|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 355667888899999999999999999999 5555555554 7999999999999998
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.. +|. ..-.+..+|.+|+.+| ++++|+..|.+.+.-
T Consensus 91 ~~----~p~-~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KR----EET-NEKALFRRAKARIAAW-KLDEAEEDLKLLLRN 126 (162)
T ss_dssp HH----STT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred hc----CCc-chHHHHHHHHHHHHHh-cHHHHHHHHHHHHhc
Confidence 83 332 2345567999999997 999999999998876
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-06 Score=71.04 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=60.7
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCC----------HHHHHHHHHHchhhccCCCCcchhhhHHHH
Q 026999 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCC----------FKEAVQFMEECSSTWSSCSSFMYTHNWWHV 95 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr----------~~egi~~le~~~~~w~~~~~~~~~H~~WHl 95 (229)
.+..++|++|.+.+++|+++||+++-++.. ..|+ +++||..+++++. .+|- ..-.||.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~----ldP~-~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPK-KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTT-CHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH----hCcC-cHHHHHHH
Confidence 345567778888888888888888777765 3443 4588888888877 5553 23466778
Q ss_pred HHHHHhCC----------CCHHHHHHHHHhhchh
Q 026999 96 ALCYLEGH----------SPMRKVLEIYDNHIWK 119 (229)
Q Consensus 96 AL~~l~~g----------g~~d~Al~~yd~~i~~ 119 (229)
+.+|..+| |++++|++.|++.|.-
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 88887763 3899999999999987
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.2e-06 Score=71.61 Aligned_cols=115 Identities=9% Similarity=0.009 Sum_probs=83.5
Q ss_pred CCChhHHHHHHHhhCCCCCC------chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------hhHHH------h
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHA------H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~------~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da------wA~Ha------~ 62 (229)
+|+.+.++...++++..++. ....+..+|.++.. |++++|++..++|+++.|.+. .++.. .
T Consensus 89 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 89 LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR 167 (307)
T ss_dssp TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 47788888888888775321 23577788888877 999999999999999988652 22222 6
Q ss_pred hCCHHHHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 63 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
+|++++|+..++++.......+.. .....+-.++++++..| ++++|+..|++.+
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al 222 (307)
T 2ifu_A 168 QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA-DYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHh
Confidence 899999999999988755553321 11224455788888886 8999999998888
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.5e-07 Score=63.92 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=53.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d 55 (229)
.|+.+.+.....+++...|.++.++..+|.++...|++++|++..+++++++|++
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4899999999999999999999999999999999999999999999999999998
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.13 E-value=5.9e-06 Score=74.42 Aligned_cols=105 Identities=7% Similarity=-0.048 Sum_probs=85.9
Q ss_pred CCChhHHHHHHHhhCC----------------CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---
Q 026999 1 MGRPDLCFDIIHQVLP----------------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp----------------~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--- 61 (229)
.|+.+.++...++++. ..|.+..++..+|.++...|+|++|++.+++||+++|+++.++..
T Consensus 236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 315 (370)
T 1ihg_A 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 315 (370)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3788888888888887 667788899999999999999999999999999999999988877
Q ss_pred ---hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHH
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE 111 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~ 111 (229)
..|++++|+..++++.. .+|-. .-.+..++.++...+ +++++.+
T Consensus 316 ~~~~~g~~~eA~~~l~~Al~----l~P~~-~~~~~~l~~~~~~~~-~~~~a~k 362 (370)
T 1ihg_A 316 GWQGLKEYDQALADLKKAQE----IAPED-KAIQAELLKVKQKIK-AQKDKEK 362 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HCTTC-HHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH----hCCCC-HHHHHHHHHHHHHHH-HHHHHHH
Confidence 79999999999999987 34321 234456777776665 6766653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.9e-05 Score=65.23 Aligned_cols=117 Identities=9% Similarity=0.067 Sum_probs=72.5
Q ss_pred CChhHHHHHHHhhCCCCCC------chhHHHHHHHHHHHhCCHHHHHHHHHHHH---hhCCCChh----hHHH------h
Q 026999 2 GRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGL---KINKHDCW----SQHA------H 62 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~------~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL---~LnP~daw----A~Ha------~ 62 (229)
|+.+.++....+++...+. ...++..+|.++...|+|++|++..++|+ ...|++.. +... .
T Consensus 129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 5677777777777653221 13466777777777888888888888877 44555432 2111 5
Q ss_pred hCCHHHHHHHHHHchhhccCCC-CcchhhhHHHHHHHHHhCCCCHHHH-HHHHHhhchh
Q 026999 63 DCCFKEAVQFMEECSSTWSSCS-SFMYTHNWWHVALCYLEGHSPMRKV-LEIYDNHIWK 119 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~-~~~~~H~~WHlAL~~l~~gg~~d~A-l~~yd~~i~~ 119 (229)
+|++++|+.+++++...-...+ .....-.+..+|.+|..+| ++++| ...|++.+.-
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE-YEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHH
Confidence 7788888877777754332211 1222445566777777776 77777 6667665543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00042 Score=56.46 Aligned_cols=140 Identities=14% Similarity=0.022 Sum_probs=100.9
Q ss_pred HHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----hhC----CHHHHHHHHHHch
Q 026999 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----HDC----CFKEAVQFMEECS 77 (229)
Q Consensus 7 ~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~~G----r~~egi~~le~~~ 77 (229)
++...+++... .++.++..+|..+...+++++|++..++|++. +++.+... ..| ++++|+.+++++.
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 34444555543 78889999999999999999999999999875 57777766 446 8999999999997
Q ss_pred hhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccc
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 153 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~ 153 (229)
. .+.. .. +..++.+|+. .+ ++++|+++|.+.+... +.....+|...|=.+...|..| ..
T Consensus 81 ~----~g~~-~a--~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~-------~~~~~~~a~~~Lg~~y~~g~g~--~~ 143 (212)
T 3rjv_A 81 E----AGSK-SG--EIVLARVLVNRQAGAT-DVAHAITLLQDAARDS-------ESDAAVDAQMLLGLIYASGVHG--PE 143 (212)
T ss_dssp H----TTCH-HH--HHHHHHHHTCGGGSSC-CHHHHHHHHHHHTSST-------TSHHHHHHHHHHHHHHHHTSSS--SC
T ss_pred H----CCCH-HH--HHHHHHHHHcCCCCcc-CHHHHHHHHHHHHHcC-------CCcchHHHHHHHHHHHHcCCCC--CC
Confidence 6 2322 22 3369999887 66 9999999999877652 1112456777777777777753 45
Q ss_pred cHHHHHHHHHhhhh
Q 026999 154 RLKVLADCVADQAN 167 (229)
Q Consensus 154 rW~~la~~~~~~~~ 167 (229)
..+.-......-..
T Consensus 144 d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 144 DDVKASEYFKGSSS 157 (212)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 56666555555433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.3e-06 Score=73.92 Aligned_cols=114 Identities=9% Similarity=-0.029 Sum_probs=71.2
Q ss_pred CCChhHHHHHHHhhCCCCCCch-----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH--
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED-----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~-----------------~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-- 61 (229)
.|+...+.....+++...|.+. .++..+|.++...|+|++|++.+++||+++|+++.++..
T Consensus 192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 271 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG 271 (338)
T ss_dssp SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4788999999999998888776 378899999999999999999999999999999988877
Q ss_pred ----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 ----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..|++++|+..++++...-+. + + ..+..++.......+..+++.++|.+.+..
T Consensus 272 ~a~~~~g~~~~A~~~l~~al~l~p~-~---~-~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 272 KAKAELGQMDSARDDFRKAQKYAPD-D---K-AIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-C---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 799999999999999873222 1 1 222235544233234788899999887765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.6e-05 Score=65.42 Aligned_cols=118 Identities=11% Similarity=0.012 Sum_probs=87.2
Q ss_pred CCChhHHHHHHHhhCCCCCCch------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--hh----hHHH------h
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CW----SQHA------H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~------~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d--aw----A~Ha------~ 62 (229)
.|+.+.+.....+++...+... ..+..+|..+...|++++|++..++||++.++. .+ +... .
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 3788888888888887655332 234446667778899999999999999987654 33 2322 7
Q ss_pred hCCHHHHHHHHHHchhhccCCC--CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 63 DCCFKEAVQFMEECSSTWSSCS--SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~--~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|++++|+..++++.......+ +......+..+|.+|...| +|++|+..|++.+.-
T Consensus 168 ~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEI 225 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 9999999999999984433322 1222256778999999997 999999999987765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=8.1e-06 Score=58.83 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=71.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-------hhhHHH------hhCCHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-------CWSQHA------HDCCFK 67 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d-------awA~Ha------~~Gr~~ 67 (229)
.|+...+.....+++...|.++.++..+|..+...|++++|+...++++.++|++ +.+... ..|+++
T Consensus 17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 4889999999999999999999999999999999999999999999999999987 555444 799999
Q ss_pred HHHHHHHHchh
Q 026999 68 EAVQFMEECSS 78 (229)
Q Consensus 68 egi~~le~~~~ 78 (229)
+|+.++++...
T Consensus 97 ~A~~~~~~~~~ 107 (131)
T 1elr_A 97 DAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-05 Score=58.60 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=77.7
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh------hHHH------hhCCHHHHHHHHHHchhhccCCCC-cc
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW------SQHA------HDCCFKEAVQFMEECSSTWSSCSS-FM 87 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw------A~Ha------~~Gr~~egi~~le~~~~~w~~~~~-~~ 87 (229)
...++..+|..+...|++++|++..++++++.|+... +... .+|++++|+.+++++.......++ ..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3467888999999999999999999999999876432 2222 799999999999999876555332 22
Q ss_pred hhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 88 YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 88 ~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....+..+|.++...| ++++|++.|++.+.-
T Consensus 88 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 2345667999999997 999999999887765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.1e-06 Score=69.86 Aligned_cols=77 Identities=17% Similarity=0.037 Sum_probs=69.7
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCH----------HHHHHHHHHHHhhCCCChhhHHH------hh--
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM----------SDAEEAAKKGLKINKHDCWSQHA------HD-- 63 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~----------d~Ae~~a~rAL~LnP~dawA~Ha------~~-- 63 (229)
+.++.++...++++..+|.++.++..+|.+|.+.|++ ++|+...++||+|||+++.++.. .+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 4567899999999999999999999999999999875 59999999999999999988777 33
Q ss_pred ---------CCHHHHHHHHHHchh
Q 026999 64 ---------CCFKEAVQFMEECSS 78 (229)
Q Consensus 64 ---------Gr~~egi~~le~~~~ 78 (229)
|++++|+..++++..
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHH
Confidence 589999999999998
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.4e-05 Score=53.69 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=51.8
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 20 ~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.++..+..+|..+...|++++|++..+++++++|+++.++.. ..|++++|+.+++++..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 456778889999999999999999999999999999877666 68889999988888877
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.3e-06 Score=59.23 Aligned_cols=75 Identities=8% Similarity=0.083 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHH
Q 026999 39 SDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEI 112 (229)
Q Consensus 39 d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~ 112 (229)
++|++..+++++++|+++.++.. ..|++++|+..++++... +|. ....|..+|.++...| ++++|+..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~-~~~~~~~la~~~~~~g-~~~~A~~~ 75 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF----DPT-YSVAWKWLGKTLQGQG-DRAGARQA 75 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-CHHHHHHHHHHHHHHT-CHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----CCC-cHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 45788999999999999988877 799999999999999883 332 2345567999999997 99999999
Q ss_pred HHhhchh
Q 026999 113 YDNHIWK 119 (229)
Q Consensus 113 yd~~i~~ 119 (229)
|++.+..
T Consensus 76 ~~~al~~ 82 (115)
T 2kat_A 76 WESGLAA 82 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=57.02 Aligned_cols=79 Identities=10% Similarity=0.082 Sum_probs=55.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChh-hHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-A~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
.|..+...|+|++|++..+++++++|+++. ++.. ..|++++|+..++++...-+. ....+++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD---SPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHH--------
Confidence 466677888888888888888888888887 6655 688888888888888773222 1122221
Q ss_pred hCCCCHHHHHHHHHhhchhh
Q 026999 101 EGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~~ 120 (229)
+ .+++++..|.+.+...
T Consensus 75 --~-~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 75 --K-MVMDILNFYNKDMYNQ 91 (99)
T ss_dssp --H-HHHHHHHHHCCTTHHH
T ss_pred --H-HHHHHHHHHHHHhccC
Confidence 3 5777888887777663
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-05 Score=66.42 Aligned_cols=118 Identities=11% Similarity=0.101 Sum_probs=76.3
Q ss_pred CChhHHHHHHHhhCCCCC--Cc----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC---CCh----hhHHH------h
Q 026999 2 GRPDLCFDIIHQVLPYNQ--QE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINK---HDC----WSQHA------H 62 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~--~~----~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP---~da----wA~Ha------~ 62 (229)
|+.+.++....+++...+ .+ ..++..+|.++.+.|+|++|+...++||++-+ .+. .++.. .
T Consensus 129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 3u3w_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 566777777777776322 22 23677788888888888888888888885322 221 12222 6
Q ss_pred hCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 63 DCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 63 ~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+|++++|+.+++++..-....+. ......+..+|.+|..+|.++++|++.|++.+.-
T Consensus 209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 78888888888888654433332 2224566778888888752358888888777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-05 Score=62.29 Aligned_cols=78 Identities=8% Similarity=-0.046 Sum_probs=71.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----------------hhHHH---
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da----------------wA~Ha--- 61 (229)
+|+.+.++....+++..+|.++.++..+|.++...|++++|++..+++++++|++. .++..
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (213)
T 1hh8_A 50 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129 (213)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999876 44444
Q ss_pred ---hhCCHHHHHHHHHHchh
Q 026999 62 ---HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~ 78 (229)
.+|++++|+..++++..
T Consensus 130 ~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 130 MYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 79999999999999988
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.9e-05 Score=67.73 Aligned_cols=179 Identities=12% Similarity=0.041 Sum_probs=127.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHH-------HHHHHHhCCHHHHHHHHHHHHhhCCCChhhH---------------
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGIL-------AFSLLELGQMSDAEEAAKKGLKINKHDCWSQ--------------- 59 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~-------AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~--------------- 59 (229)
||...++....+++..+|+.+.+...+ +-+|...+++.++....+++++|+|+..-+.
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 688999999999999999998887777 8899999999999999999999999863221
Q ss_pred --------HH----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCC
Q 026999 60 --------HA----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAV 127 (229)
Q Consensus 60 --------Ha----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~ 127 (229)
.+ ..|++++|.+.+++... .+|-.. ..|-+|+.+++.+ ++++|++.|+..+...
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~~--~~~~~a~l~~~~~-r~~dA~~~l~~a~~~~------- 165 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPV----AGSEHL--VAWMKAVVYGAAE-RWTDVIDQVKSAGKWP------- 165 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC----TTCHHH--HHHHHHHHHHHTT-CHHHHHHHHTTGGGCS-------
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCchH--HHHHHHHHHHHcC-CHHHHHHHHHHhhccC-------
Confidence 11 69999999999999987 455323 6688999999997 9999999997554431
Q ss_pred chhhhhh-HHHHHHHHhhcCCcccccccHHHHHHHHHhhhhccc--cchhhHHH--HHHHhcCCCcHHHHHHHHHHHHH
Q 026999 128 HPEVYLN-ALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYL--ECHLDLLI--LWALANTGEVSKAEDLLKGLKSR 201 (229)
Q Consensus 128 ~~~~~~D-a~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~--~~F~d~H~--~~al~~ag~~~~~~~ll~~~~~~ 201 (229)
.+.+.+ +.-.| ...-.. -.++++-...+..-...+. ..+.|.++ .+++...|+.+++..+++.+...
T Consensus 166 -d~~~~~~a~~~L---G~al~~---LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 -DKFLAGAAGVAH---GVAAAN---LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp -CHHHHHHHHHHH---HHHHHH---TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -CcccHHHHHHHH---HHHHHH---CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111112 21111 111110 1245555555544332332 11555554 88899999999999999888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=61.77 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=74.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHH-HHHhCCH--HHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS-LLELGQM--SDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQ 71 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~-L~e~g~~--d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~ 71 (229)
+|+.+.++....+++...|.++.++..+|.+ +...|++ ++|++..+++++++|+++.++.. .+|++++|+.
T Consensus 57 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 57 QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136 (177)
T ss_dssp TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH
Confidence 4899999999999999999999999999999 7789999 99999999999999999887766 7999999999
Q ss_pred HHHHchhhccC
Q 026999 72 FMEECSSTWSS 82 (229)
Q Consensus 72 ~le~~~~~w~~ 82 (229)
.++++...-+.
T Consensus 137 ~~~~al~~~p~ 147 (177)
T 2e2e_A 137 LWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHTCCT
T ss_pred HHHHHHhhCCC
Confidence 99999884333
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00012 Score=64.91 Aligned_cols=110 Identities=13% Similarity=-0.052 Sum_probs=78.4
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCChhhHHH----h------h---CCHHH
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHA----H------D---CCFKE 68 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g--~~d~Ae~~a~rAL~LnP~dawA~Ha----~------~---Gr~~e 68 (229)
.++++....+++..+|++.-+-...+-+|...| +++++.+...++|.+||++.+++|- . . +++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 356777777777777877777777777777777 7788888888888888888777776 1 1 67777
Q ss_pred HHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH--HHHHHHHhhchh
Q 026999 69 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR--KVLEIYDNHIWK 119 (229)
Q Consensus 69 gi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d--~Al~~yd~~i~~ 119 (229)
.+.++++... .+|- -.|.|-|.....-..| +++ ++++.+++.|..
T Consensus 129 EL~~~~~~l~----~~pk-ny~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 129 EFDILEAMLS----SDPK-NHHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HHHHHHHHHH----HCTT-CHHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hCCC-CHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHh
Confidence 7777777776 2332 2466667666655565 666 777777777766
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-05 Score=72.98 Aligned_cols=108 Identities=6% Similarity=-0.090 Sum_probs=82.6
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCH-----------HHHHHHHHHHHhhCCCChhhHHH------hhCCH
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM-----------SDAEEAAKKGLKINKHDCWSQHA------HDCCF 66 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~-----------d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~ 66 (229)
..+++++.+|++..+|++++++..+++++.....+ .+|.+ +..++.++|++++++-+ ++|++
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 46789999999999999999999999987642211 12333 22456889999998877 69999
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++|+..++++.. +||....|+ -++..+...| ++++|++.|++.+..
T Consensus 294 d~A~~~l~rAl~----Ln~s~~a~~--llG~~~~~~G-~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 294 DESYQAINTGID----LEMSWLNYV--LLGKVYEMKG-MNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHH----HCCCHHHHH--HHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----cCCCHHHHH--HHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 999999999998 564322221 3566666776 999999999999987
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.95 E-value=3.1e-05 Score=70.95 Aligned_cols=80 Identities=18% Similarity=0.121 Sum_probs=66.1
Q ss_pred hhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCc
Q 026999 13 QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSF 86 (229)
Q Consensus 13 ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~ 86 (229)
.+++..|.++.++..+++.+.-.|++++|++..+|||++||+ ..++-. +.|++++|++.++++.+ .+|.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr----L~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN----LRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCC
Confidence 456778999999999999998899999999999999999975 333222 89999999999999999 8888
Q ss_pred chhhhHHHHHHH
Q 026999 87 MYTHNWWHVALC 98 (229)
Q Consensus 87 ~~~H~~WHlAL~ 98 (229)
.+..+ |.-.++
T Consensus 343 ~~t~~-~~~~l~ 353 (372)
T 3ly7_A 343 ANTLY-WIENGI 353 (372)
T ss_dssp HHHHH-HHHHSS
T ss_pred cChHH-HHhCce
Confidence 77544 555554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2.7e-05 Score=53.38 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=56.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
.|+.+.+.....+++...|.++.++..+|.++...|++++|++..+++++++|+++.+...
T Consensus 22 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999876643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.7e-05 Score=67.02 Aligned_cols=119 Identities=8% Similarity=0.022 Sum_probs=90.5
Q ss_pred CCChhHHHHHHHhhCCCCCC------chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--h----hhHHH-----hh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--C----WSQHA-----HD 63 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~------~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d--a----wA~Ha-----~~ 63 (229)
.|+.+.+.+...+++...+. -...+..+|.++...|+|++|++..++|+++.+.. . .++.. ..
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 37788888888888776432 24577888899999999999999999999996542 2 22222 34
Q ss_pred CCHHHHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
|++++|+..++++.......+.. .....+-.+|.+|..+| +|++|+..|++.+...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ-KFDEAAASLQKEKSMY 185 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Confidence 99999999999998866654321 12345567999999997 9999999999988753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00024 Score=60.28 Aligned_cols=118 Identities=11% Similarity=-0.014 Sum_probs=86.8
Q ss_pred CChhHHHHHHHhhCCCCCCchh------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh------hHHH------hh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDF------IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW------SQHA------HD 63 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~------~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw------A~Ha------~~ 63 (229)
|+.+.+....++++...+..+. .+..++..+...|++++|....++||.+.+.... +... .+
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 168 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN 168 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Confidence 7888899999998876554332 2223455566677999999999999997654332 2222 79
Q ss_pred CCHHHHHHHHHHchhhccCC--CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 64 CCFKEAVQFMEECSSTWSSC--SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~--~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
|++++|+.+.+++....... ++....-.+-.+|.+|..+| +|++|+..|++.+.-.
T Consensus 169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 169 GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEIS 226 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 99999999999998644432 21223346678999999997 9999999999988753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.88 E-value=2.9e-05 Score=72.08 Aligned_cols=87 Identities=11% Similarity=0.131 Sum_probs=73.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 27 ~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
.+|..+...|+|++|++..++|++++|+++.++.. .+|++++|+..++++.. .+|- ....+..+|..|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE----LDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCC-CHHHHHHHHHHHH
Confidence 34455667899999999999999999999988877 79999999999999998 3443 2345567999999
Q ss_pred hCCCCHHHHHHHHHhhchh
Q 026999 101 EGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~ 119 (229)
.+| ++++|++.|++.+..
T Consensus 86 ~~g-~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 86 ALG-KFRAALRDYETVVKV 103 (477)
T ss_dssp HHT-CHHHHHHHHHHHHHH
T ss_pred HcC-CHHHHHHHHHHHHHh
Confidence 997 999999999998876
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.2e-05 Score=65.64 Aligned_cols=118 Identities=8% Similarity=-0.049 Sum_probs=93.3
Q ss_pred CCChhHHHHHHHhhCCCC------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh-------hHHH------
Q 026999 1 MGRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-------SQHA------ 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-------A~Ha------ 61 (229)
.|+.+.++....+++... +..+.++..+|.++...|++++|....++|+++.|+... +...
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 488899999999988752 235678899999999999999999999999999776432 1111
Q ss_pred hhCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..|++++|+..++++.+.....+. ......+-.+|.+|...| ++++|++.|.+.+.-
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG-DDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 699999999999999775543332 223446667999999997 999999999998873
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.002 Score=58.74 Aligned_cols=105 Identities=8% Similarity=-0.005 Sum_probs=48.4
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHh----CCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL----GQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEA 69 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~----g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~eg 69 (229)
+...++...++++...+.++..+..+|..+... +++++|.+..++|. |+++.+... ..|++++|
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 344444444555444444444444444444332 35555555555544 445444444 23455555
Q ss_pred HHHHHHchhhccCCCCcchhhhHHHHHHHHHhCC---CCHHHHHHHHHhhc
Q 026999 70 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH---SPMRKVLEIYDNHI 117 (229)
Q Consensus 70 i~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~g---g~~d~Al~~yd~~i 117 (229)
+.+++++.. .+ ....++ .++.+|.... .++++|+++|.+.+
T Consensus 271 ~~~~~~Aa~----~g-~~~A~~--~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 271 MKYLDNGRA----AD-QPRAEL--LLGKLYYEGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHH----TT-CHHHHH--HHHHHHHHCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHH----CC-CHHHHH--HHHHHHHcCCCCCCCHHHHHHHHHHHh
Confidence 555555544 12 111221 3555555410 15666666665554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.80 E-value=9e-05 Score=52.14 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=66.7
Q ss_pred CChhHHHHHHHhhCCCCCCchh-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHHhhCCHHHHHHHHHHchh
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCCFKEAVQFMEECSS 78 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~-~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~Gr~~egi~~le~~~~ 78 (229)
|+.+.+....++++..+|.++. ++..+|.++...|++++|++..+++++++|+++-++. .+...+++...++...
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA--RKMVMDILNFYNKDMY 89 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH--HHHHHHHHHHHCCTTH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhc
Confidence 7889999999999999999999 9999999999999999999999999999999986653 3677888888777654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0002 Score=64.33 Aligned_cols=91 Identities=10% Similarity=-0.072 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHh----------------hCCCChhhHHH------hhCCHHHHHHHHHHchhhc
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLK----------------INKHDCWSQHA------HDCCFKEAVQFMEECSSTW 80 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~----------------LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w 80 (229)
..+..+|..+...|+|++|++..++||+ ++|.++.++.. .+|++++|+..++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 4577788899999999999999999999 77777766665 79999999999999998
Q ss_pred cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 81 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 81 ~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|- ..-.+..+|.+|+.+| ++++|++.|++.+..
T Consensus 302 --~~p~-~~~a~~~lg~~~~~~g-~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 302 --IDPS-NTKALYRRAQGWQGLK-EYDQALADLKKAQEI 336 (370)
T ss_dssp --TCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred --hCch-hHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Confidence 3432 2345567999999997 999999999998876
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00013 Score=64.67 Aligned_cols=177 Identities=8% Similarity=-0.017 Sum_probs=118.6
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHH----HHh---CCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHH--
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSL----LEL---GQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFK-- 67 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L----~e~---g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~-- 67 (229)
+....++...+++..+|.+..+-...+.++ ... ++++++.+...++|+++|++.++++- ..|+++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~ 163 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence 778899999999999999888888888888 666 78999999999999999999999887 578887
Q ss_pred HHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH------HHHHHHHhhchhhccCCCCCchhhhhhHHHHHHH
Q 026999 68 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR------KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 141 (229)
Q Consensus 68 egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d------~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwR 141 (229)
+.+++.++... .+|. -.|-|-|........+ +.. ++++.+++.|... --|.++-.+|
T Consensus 164 ~EL~~~~~~i~----~d~~-N~sAW~~R~~ll~~l~-~~~~~~~~~eEl~~~~~aI~~~-----------p~n~SaW~y~ 226 (306)
T 3dra_A 164 KELSFVDKVID----TDLK-NNSAWSHRFFLLFSKK-HLATDNTIDEELNYVKDKIVKC-----------PQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHHHH----HCTT-CHHHHHHHHHHHHSSG-GGCCHHHHHHHHHHHHHHHHHC-----------SSCHHHHHHH
T ss_pred HHHHHHHHHHH----hCCC-CHHHHHHHHHHHHhcc-ccchhhhHHHHHHHHHHHHHhC-----------CCCccHHHHH
Confidence 99999999987 3433 3466666666544443 211 3555555555541 2366777676
Q ss_pred HhhcCCcccccccHHHHHHHHHhhhh----ccccchhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 026999 142 VYVRGELDVFGNRLKVLADCVADQAN----WYLECHLDLLILWALANTGEVSKAEDLLKGLK 199 (229)
Q Consensus 142 L~l~G~~v~vg~rW~~la~~~~~~~~----~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 199 (229)
-.+.... |...+.+.....+... ....+|+---.+-++...|+.+.+.++.+.+.
T Consensus 227 ~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 227 LGIHERF---DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHT---TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhc---CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6665442 3334445444444222 13344544444445556677766666655554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00027 Score=67.34 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=95.3
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCChhhHHH------hhC--C
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHA------HDC--C 65 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~----------~d~Ae~~a~rAL~LnP~dawA~Ha------~~G--r 65 (229)
.+++++...+++..+|.+..+....+.++...|+ |++|.+...++|+++|++.++++- ..| +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 4578999999999999999999999999999998 999999999999999999999988 567 6
Q ss_pred HHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 66 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 66 ~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+++++++.+++.. .+|. -.|.|-|.+......|..++++++.+++.|..
T Consensus 125 ~~~el~~~~k~l~----~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 125 WARELELCARFLE----ADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp HHHHHHHHHHHHH----HCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHh----hccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 7999999999988 3433 35777777776666643799999999999876
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00028 Score=57.50 Aligned_cols=108 Identities=11% Similarity=0.050 Sum_probs=54.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC----CHHHHHHHHHHHHhhCCCChhhHHH------h----hCCHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG----QMSDAEEAAKKGLKINKHDCWSQHA------H----DCCFK 67 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g----~~d~Ae~~a~rAL~LnP~dawA~Ha------~----~Gr~~ 67 (229)
||.+.++...++++.. +++.++..+|..+.. + ++++|.+..++|+ +++++.+... . .++++
T Consensus 32 ~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~ 106 (212)
T 3rjv_A 32 GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVA 106 (212)
T ss_dssp TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHH
Confidence 4555555555555432 345555555555555 4 5666666666653 3445555444 1 44556
Q ss_pred HHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026999 68 EAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 68 egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~~ 119 (229)
+|+.+++++.. .++. -..--+..++.+|+. .+ ++++|+.+|.+.+..
T Consensus 107 ~A~~~~~~A~~----~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 107 HAITLLQDAAR----DSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHTS----STTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----cCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHc
Confidence 66666665554 2320 001111235555555 43 566666666555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=7.1e-05 Score=66.70 Aligned_cols=76 Identities=8% Similarity=-0.051 Sum_probs=66.9
Q ss_pred ChhHHHHHHHhhCCCCCC--chhHHHHHHHHHHH-----hCCHHHHHHHHHHHHhhCCCC-hhhHHH-------hhCCHH
Q 026999 3 RPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLE-----LGQMSDAEEAAKKGLKINKHD-CWSQHA-------HDCCFK 67 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~--~~~~~g~~AF~L~e-----~g~~d~Ae~~a~rAL~LnP~d-awA~Ha-------~~Gr~~ 67 (229)
....+++.++|++..+|. ++-+|..+|..+.. -|+.++|++..+|||+|||+. +.+... .+|+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 457889999999999998 66799999999888 499999999999999999975 766666 269999
Q ss_pred HHHHHHHHchh
Q 026999 68 EAVQFMEECSS 78 (229)
Q Consensus 68 egi~~le~~~~ 78 (229)
++.+.+++++.
T Consensus 258 ~a~~~L~kAL~ 268 (301)
T 3u64_A 258 GFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999999988
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.63 E-value=6.7e-05 Score=66.17 Aligned_cols=93 Identities=9% Similarity=-0.037 Sum_probs=75.3
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh-----------------hHHH------hhCCHHHHHHHHHHch
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----------------SQHA------HDCCFKEAVQFMEECS 77 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw-----------------A~Ha------~~Gr~~egi~~le~~~ 77 (229)
....+...|..+...|+|++|+...++|++++|++.. ++.. ..|++++|+..+++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456777888888999999999999999999999862 2222 7999999999999998
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 78 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 78 ~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.. +|. ....+..+|.+|+.+| ++++|+..|.+.+..
T Consensus 258 ~~----~p~-~~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TE----EEK-NPKALFRRGKAKAELG-QMDSARDDFRKAQKY 293 (338)
T ss_dssp HH----CTT-CHHHHHHHHHHHHTTT-CHHHHHHHHHHTTC-
T ss_pred Hh----CCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 73 332 1345567999999997 999999999998765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.63 E-value=4.5e-05 Score=55.01 Aligned_cols=59 Identities=8% Similarity=0.124 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~ 59 (229)
+|+.+.++...++++..+|+++.++..+|.++...|++++|++..++|++++|++....
T Consensus 20 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 20 HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 58999999999999999999999999999999999999999999999999988765443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0059 Score=55.41 Aligned_cols=105 Identities=11% Similarity=-0.032 Sum_probs=59.1
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCChhhHHH------h----hCCHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHA------H----DCCFK 67 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e----~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~----~Gr~~ 67 (229)
||.+.+....++++.. +++.++..+|..+.. .+++++|.+..++|++.+ ++.+... . .++++
T Consensus 57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4555666666666543 455566666666666 666777777777666543 4444433 1 45666
Q ss_pred HHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHhhch
Q 026999 68 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 68 egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~ 118 (229)
+|+.+++++.. .+.. . .+..+|.+|.. .+ ++++|+++|.+.+.
T Consensus 133 ~A~~~~~~a~~----~~~~-~--a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 133 ESVKWFRLAAE----QGRD-S--GQQSMGDAYFEGDGVTR-DYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHHHH----TTCH-H--HHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----CCCH-H--HHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHH
Confidence 66666666655 1211 1 12246666655 33 66666666665544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00037 Score=63.17 Aligned_cols=127 Identities=11% Similarity=0.064 Sum_probs=102.2
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChhhHHH-------hhC-CHHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHA-------HDC-CFKEAVQFM 73 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~G-r~~egi~~l 73 (229)
..+++++...+++..+|.+..+-...+.++...| .++++.+...++|.+||++.++++- ..+ ++++.+++.
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4578999999999999999999999999999999 5999999999999999999999998 336 899999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH--------HHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhc
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR--------KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR 145 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d--------~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~ 145 (229)
++... .+|- -.|.|-|.....-..| .++ ++++.+++.|... ..|.++--+|-.+.
T Consensus 149 ~k~L~----~dpk-Ny~AW~~R~wvl~~l~-~~~~~~~~~~~eELe~~~k~I~~d-----------p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 149 HGSLL----PDPK-NYHTWAYLHWLYSHFS-TLGRISEAQWGSELDWCNEMLRVD-----------GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHTS----SCTT-CHHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHH
T ss_pred HHHHH----hCCC-CHHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHH
Confidence 99987 3443 3577777766655554 566 9999999888762 12555666665554
Q ss_pred C
Q 026999 146 G 146 (229)
Q Consensus 146 G 146 (229)
.
T Consensus 212 ~ 212 (349)
T 3q7a_A 212 V 212 (349)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00027 Score=66.56 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=85.6
Q ss_pred CChhHHHHHHHhhCCC--------CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCChhhHHH-------
Q 026999 2 GRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-----NKHDCWSQHA------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~--------~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-----nP~dawA~Ha------- 61 (229)
|+.++++...++++.. +|+-...+..+|.++...|+|++|+..++++|++ -|+++....+
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 402 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLT 402 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6777777777777653 2334467888999999999999999999999986 5777766555
Q ss_pred --hhCCHHHHHHHHHHchhhccCCCCcchhh-----hHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026999 62 --HDCCFKEAVQFMEECSSTWSSCSSFMYTH-----NWWHVALCYLEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~~~~~~~~H-----~~WHlAL~~l~~gg~~d~Al~~yd~~i 117 (229)
.+|+++||+..++++...... .+-+.| ..=-++.++.+++ .|++|..+|.+..
T Consensus 403 ~~~~G~~~eA~~~~~~Al~i~~~--~lG~~Hp~~~~~~~~l~~~~~e~~-~~~~ae~~~~~~~ 462 (490)
T 3n71_A 403 NWHAGHIEVGHGMICKAYAILLV--THGPSHPITKDLEAMRMQTEMELR-MFRQNEFMYHKMR 462 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH--HTCTTSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 699999999999999765443 111223 2234888999997 9999999997753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00034 Score=66.68 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=90.2
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCChhhHHH------hhC-CHHHHHHHHH
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHA------HDC-CFKEAVQFME 74 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g--~~d~Ae~~a~rAL~LnP~dawA~Ha------~~G-r~~egi~~le 74 (229)
..+++....+++..+|.+..+....++++...| ++++|.+...++|+++|+|..|++- ..| +.++++++.+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 678899999999999999999999999999999 7799999999999999999888877 466 8999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCC-------------CCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGH-------------SPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~g-------------g~~d~Al~~yd~~i~~ 119 (229)
+++. .+|. -.-.|-|.+..+..++ +.++++++.|++.|..
T Consensus 169 ~~I~----~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 169 SLIT----RNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp TTTT----TTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 9988 4543 1223334444433320 2689999999999976
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00021 Score=52.24 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=43.7
Q ss_pred CCCchhHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 18 NQQEDFIFGILAFSLLELGQ---MSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 18 ~~~~~~~~g~~AF~L~e~g~---~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
.|+++.+++.+|-+|...++ .++|++..++||+++|+++-+.-- .+|++++|+...++...
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677777777777765544 677777777777777777766655 67777777777777765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.02 Score=51.84 Aligned_cols=47 Identities=11% Similarity=-0.101 Sum_probs=20.6
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHH----hCCHHHHHHHHHHHHhh
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKI 51 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e----~g~~d~Ae~~a~rAL~L 51 (229)
|.+.++...++++.. +++.++..+|..+.. .+++++|.+..++|++.
T Consensus 130 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 444444444444332 233444444444444 44444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00096 Score=62.76 Aligned_cols=87 Identities=6% Similarity=-0.023 Sum_probs=67.9
Q ss_pred HHHhCCHHHHHHHHHHHHhh-----CCCChhhHHH---------hhCCHHHHHHHHHHchhhccC----CCCcchhhhHH
Q 026999 32 LLELGQMSDAEEAAKKGLKI-----NKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSS----CSSFMYTHNWW 93 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~L-----nP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~----~~~~~~~H~~W 93 (229)
+...|+|++|+...+++|++ -|++++...+ .+|++++|+.+.+++...+.. ..|. ....+-
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ-LGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH-HHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHH
Confidence 55689999999999999986 5777776666 699999999999999765433 1221 122445
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
.+|..|..+| +|++|+.+|.+.+...
T Consensus 398 nLa~~~~~~G-~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 398 RAGLTNWHAG-HIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence 6999999997 9999999998887653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0059 Score=55.63 Aligned_cols=124 Identities=12% Similarity=0.054 Sum_probs=94.2
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHH-H--HHhCCHHHHHHHHHHHHhhCCCChhhHHH-----hhC-----CHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS-L--LELGQMSDAEEAAKKGLKINKHDCWSQHA-----HDC-----CFKE 68 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~-L--~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~~G-----r~~e 68 (229)
+|.+.++...+++. |+++.++..+|.. + ...+++++|.+..++|++.+ ++.+... ..| ++++
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~ 305 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYYEGKWVPADAKA 305 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 47788999999998 7888888888887 4 46889999999999998654 7777766 677 9999
Q ss_pred HHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCC---CCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhc
Q 026999 69 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH---SPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR 145 (229)
Q Consensus 69 gi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~g---g~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~ 145 (229)
|+.|++++. .. ++ ..+ ..++.+|.... .++++|+.+|.+...+. ..+|.--|=.+...
T Consensus 306 A~~~~~~Aa---~g-~~--~A~--~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----------~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 306 AEAHFEKAV---GR-EV--AAD--YYLGQIYRRGYLGKVYPQKALDHLLTAARNG-----------QNSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHTTT---TT-CH--HHH--HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-----------CTTHHHHHHHHHHS
T ss_pred HHHHHHHHh---CC-CH--HHH--HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-----------hHHHHHHHHHHHHh
Confidence 999999998 22 32 233 35999988721 18999999998877652 13555566666677
Q ss_pred CCcc
Q 026999 146 GELD 149 (229)
Q Consensus 146 G~~v 149 (229)
|..|
T Consensus 367 G~g~ 370 (452)
T 3e4b_A 367 GKGT 370 (452)
T ss_dssp CTTB
T ss_pred CCCC
Confidence 7653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0023 Score=57.41 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=92.2
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCChhhHHH------hhC--CH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHA------HDC--CF 66 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~----------~d~Ae~~a~rAL~LnP~dawA~Ha------~~G--r~ 66 (229)
+++++...+++..+|.+.-+-...+.++...+. ++++.+...++|..||++.++++- ..| .+
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 478999999999999999888888888877765 789999999999999999999988 455 48
Q ss_pred HHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCC-HHHHHHHHHhhchh
Q 026999 67 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP-MRKVLEIYDNHIWK 119 (229)
Q Consensus 67 ~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~-~d~Al~~yd~~i~~ 119 (229)
++.+++.++... .+|. -.|.|-|-....-..| . ++++++.+++.|..
T Consensus 127 ~~EL~~~~k~l~----~dpr-Ny~AW~~R~~vl~~l~-~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 127 ARELELCARFLE----ADER-NFHCWDYRRFVAAQAA-VAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHHHHHHHHH----HCTT-CHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCC-CHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHH
Confidence 999999999988 3433 3578888887766776 6 69999999999976
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00056 Score=63.35 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=67.0
Q ss_pred hCCHHHHHHHHHHHHh-----hCCCChhhHHH---------hhCCHHHHHHHHHHchhhccC----CCCcchhhhHHHHH
Q 026999 35 LGQMSDAEEAAKKGLK-----INKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSS----CSSFMYTHNWWHVA 96 (229)
Q Consensus 35 ~g~~d~Ae~~a~rAL~-----LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~----~~~~~~~H~~WHlA 96 (229)
.|+|++|+...+++|+ +-|+++....+ .+|++++|+.+.+++...+.. ..|- ...-+-.+|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN-VASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHH
Confidence 5789999999999998 56888887776 699999999999999765443 2221 233445799
Q ss_pred HHHHhCCCCHHHHHHHHHhhchhh
Q 026999 97 LCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 97 L~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
..|..+| +|++|+.+|.+.+...
T Consensus 390 ~~~~~qg-~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 390 RLYMGLE-NKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHhcc-CHHHHHHHHHHHHHHH
Confidence 9999997 9999999999888764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=48.35 Aligned_cols=55 Identities=13% Similarity=0.024 Sum_probs=50.9
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS 58 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA 58 (229)
.+++....++++..+|.++.++.++|+...+.|+|++|...-++.|+.+|.++|.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 5788999999999999999999999999999999999999999999999998875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0018 Score=57.84 Aligned_cols=110 Identities=10% Similarity=0.038 Sum_probs=83.7
Q ss_pred CChhHHHHHHHhhCCCCC--CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------------hhC--C
Q 026999 2 GRPDLCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------HDC--C 65 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~--~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------~~G--r 65 (229)
|+.+++++...+++...| ++..+..+.+..+...|+.+.|++..++..+.+|+..|+-.. .+| +
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~ 193 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKET 193 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCST
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCcc
Confidence 889999999999988876 777888889999999999999999999999999954444332 345 8
Q ss_pred HHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 66 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 66 ~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
.+++..++++.....+. +-.....|. +++.+| ++++|.++++..+.
T Consensus 194 ~q~A~~~f~El~~~~p~---~~~~~lLln---~~~~~g-~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 194 ATSNFYYYEELSQTFPT---WKTQLGLLN---LHLQQR-NIAEAQGIVELLLS 239 (310)
T ss_dssp TTHHHHHHHHHHTTSCS---HHHHHHHHH---HHHHHT-CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCC---cccHHHHHH---HHHHcC-CHHHHHHHHHHHHH
Confidence 99999999998764332 112223233 677886 99999999975443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0017 Score=58.72 Aligned_cols=111 Identities=8% Similarity=-0.007 Sum_probs=92.7
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHh-C-CHHHHHHHHHHHHhhCCCChhhHHH------hhCCHH-------
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-G-QMSDAEEAAKKGLKINKHDCWSQHA------HDCCFK------- 67 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~-g-~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~------- 67 (229)
+..+.+..+.+++..+|.+..+-...++++... + +++++.+...++|+++|+|.+|++- ..|+.+
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 478899999999999999999999999999998 8 9999999999999999999988877 455666
Q ss_pred -HHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCC-------HHHHHHHHHhhchh
Q 026999 68 -EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP-------MRKVLEIYDNHIWK 119 (229)
Q Consensus 68 -egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~-------~d~Al~~yd~~i~~ 119 (229)
+.+++.++.+. .+|. -.+-|-|.+.....++ + ++++++.+++.|..
T Consensus 184 ~eELe~~~k~I~----~dp~-N~SAW~~R~~lL~~l~-~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 184 GSELDWCNEMLR----VDGR-NNSAWGWRWYLRVSRP-GAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHHHHHHHH----HCTT-CHHHHHHHHHHHTTST-TCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCC-CHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHh
Confidence 99999999988 3433 3456666776655565 5 79999999999876
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0027 Score=48.58 Aligned_cols=103 Identities=5% Similarity=-0.051 Sum_probs=81.3
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----h-----hCCHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----H-----DCCFKEAVQF 72 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~-----~Gr~~egi~~ 72 (229)
|.+.++...+++.......+. +|..+...+.+++|.+..++|.+. +++.+... . .+++++|+.|
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 567788888888876544444 777788888999999999999987 67777776 2 6799999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~~ 119 (229)
++++.+ .+..... ..++.+|.. .+ ++++|+++|.+....
T Consensus 84 ~~~Aa~----~g~~~a~---~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACG----LNDQDGC---LILGYKQYAGKGVVK-NEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHH----TTCHHHH---HHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHc----CCCHHHH---HHHHHHHHCCCCCCc-CHHHHHHHHHHHHHC
Confidence 999987 3422232 359999998 66 999999999887765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0052 Score=53.76 Aligned_cols=141 Identities=9% Similarity=0.007 Sum_probs=103.8
Q ss_pred CChhHHHHHHHhhCCCCCCch-----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---
Q 026999 2 GRPDLCFDIIHQVLPYNQQED-----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA--- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~-----------------~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--- 61 (229)
|+..++.+...+++...+... -++..+|-.+...|++++|.+...+++.+.+...-+...
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 788888888888887655322 246778889999999999999999999998887655333
Q ss_pred ---------hhCCHHHHHHHHHHchhhccCCC-CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhh
Q 026999 62 ---------HDCCFKEAVQFMEECSSTWSSCS-SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEV 131 (229)
Q Consensus 62 ---------~~Gr~~egi~~le~~~~~w~~~~-~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~ 131 (229)
..|+.++++.+.+.+...-...+ .+...-.+-.+|..|++.| +|++|+.++.+.+... .+. .....
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~-~~~--~~~~~ 173 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK-QYKDSLALINDLLREF-KKL--DDKPS 173 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH-TTS--SCSTH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHH-Hhc--ccchh
Confidence 57999999999998865333322 2334445567999999997 9999999998876542 222 23344
Q ss_pred hhhHHHHHHHHhhcC
Q 026999 132 YLNALGLLLRVYVRG 146 (229)
Q Consensus 132 ~~Da~sLLwRL~l~G 146 (229)
.+++...+.|+.+.=
T Consensus 174 ~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKL 188 (434)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 677777777777753
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0022 Score=59.07 Aligned_cols=87 Identities=6% Similarity=-0.069 Sum_probs=69.1
Q ss_pred HHHhCCHHHHHHHHHHHHhh-----CCCChhhHHH---------hhCCHHHHHHHHHHchhhccC----CCCcchhhhHH
Q 026999 32 LLELGQMSDAEEAAKKGLKI-----NKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSS----CSSFMYTHNWW 93 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~L-----nP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~----~~~~~~~H~~W 93 (229)
+...|+|++|++..+++|++ -|+++....+ .+|++++|+.+.+++...+.. ..|. ...-+.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~-~a~~l~ 375 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV-RGVQVM 375 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH-HHHHHH
Confidence 33578999999999999975 6888877766 699999999999999765433 2222 234566
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
.+|..|..+| +|++|+.+|.+.+...
T Consensus 376 nLa~~~~~~g-~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 376 KVGKLQLHQG-MFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 7999999997 9999999999888764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.044 Score=58.08 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=51.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+++.+.++|+ ..+.++..+|.+++..|++.+|.....+| +|+.++.. ..|+++++++++..
T Consensus 1090 ~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556666666666 55788889999999999999999999887 67666555 78999999999976
Q ss_pred ch
Q 026999 76 CS 77 (229)
Q Consensus 76 ~~ 77 (229)
+.
T Consensus 1160 Ar 1161 (1630)
T 1xi4_A 1160 AR 1161 (1630)
T ss_pred HH
Confidence 54
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.037 Score=49.54 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=87.3
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCChhhHHH------hhCC-HHHHHHHHH
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHA------HDCC-FKEAVQFME 74 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g--~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr-~~egi~~le 74 (229)
....+..+.+++..+|.+..+-...++++...| .++++.+...++|+++|+|..|++- ..|+ .++.+++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 356788899999999999999999999999988 4999999999999999999888876 5677 599999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCC-------------CCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGH-------------SPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~g-------------g~~d~Al~~yd~~i~~ 119 (229)
+++. .+|. -...|-|.+......+ +.++++++.+++.|..
T Consensus 170 ~~I~----~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 170 SLIT----RNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHH----HCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 9988 3433 1233334443333220 2589999999999977
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0039 Score=45.48 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=51.4
Q ss_pred CCChhHHHHHHHhhCCCC-------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 1 MGRPDLCFDIIHQVLPYN-------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~-------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
.|+...+....++++... ...+.++..+|+++.+.|++++|....++|+.++|+++.+.+.
T Consensus 18 ~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 367778888887777642 2456789999999999999999999999999999999988766
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0062 Score=56.31 Aligned_cols=81 Identities=7% Similarity=-0.107 Sum_probs=65.0
Q ss_pred CChhHHHHHHHhhCCC-----CCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCChhhHHH-------
Q 026999 2 GRPDLCFDIIHQVLPY-----NQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKI-----NKHDCWSQHA------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~-----~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-----nP~dawA~Ha------- 61 (229)
|+.+++....++++.. .|+++ -.+..+|.++...|+|++|+..++|+|++ -|+++....+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6777888888877763 33444 56778899999999999999999999976 5777776666
Q ss_pred --hhCCHHHHHHHHHHchhhccC
Q 026999 62 --HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~ 82 (229)
.+|+++||+..++++...+..
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHH
Confidence 699999999999999775443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0065 Score=44.23 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=49.1
Q ss_pred hCCCChhhHHH---hhCCHHHHHHHHHHchhhccCCC--CcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 51 INKHDCWSQHA---HDCCFKEAVQFMEECSSTWSSCS--SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 51 LnP~dawA~Ha---~~Gr~~egi~~le~~~~~w~~~~--~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++.|+..+-. .+|++++|+.|++.+...+...+ .+....++-++|.+++.+| ++++|+..|.+.+.-
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhc
Confidence 44555555444 67888888888888877664422 1334456678999999997 999999999988765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.027 Score=50.08 Aligned_cols=78 Identities=10% Similarity=-0.068 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhhCCC--ChhhHHH-----h------hCCHHHHHHHHHHchhhccCCCCc--chhhhHHHHHHHHHh
Q 026999 37 QMSDAEEAAKKGLKINKH--DCWSQHA-----H------DCCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLE 101 (229)
Q Consensus 37 ~~d~Ae~~a~rAL~LnP~--dawA~Ha-----~------~Gr~~egi~~le~~~~~w~~~~~~--~~~H~~WHlAL~~l~ 101 (229)
...+|+...+|||+|+|+ ++=++.. . -|+.++|...++++.. .||- +-.++ .+|-++..
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~----LnP~~~id~~v--~YA~~l~~ 251 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR----YCSAHDPDHHI--TYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH----HCCTTCSHHHH--HHHHHTTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH----hCCCCCchHHH--HHHHHHHH
Confidence 356799999999999999 6545555 2 4999999999999998 5652 33343 37777767
Q ss_pred CCCCHHHHHHHHHhhchhh
Q 026999 102 GHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 102 ~gg~~d~Al~~yd~~i~~~ 120 (229)
..|+++++.+.+++.+...
T Consensus 252 ~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAID 270 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCC
T ss_pred hcCCHHHHHHHHHHHHcCC
Confidence 4349999999999998863
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.011 Score=54.37 Aligned_cols=81 Identities=7% Similarity=0.033 Sum_probs=65.7
Q ss_pred CChhHHHHHHHhhCCC-----CCCch---hHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCChhhHHH-------
Q 026999 2 GRPDLCFDIIHQVLPY-----NQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKI-----NKHDCWSQHA------- 61 (229)
Q Consensus 2 G~~~~~~~~~~ralp~-----~~~~~---~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-----nP~dawA~Ha------- 61 (229)
|+.++++...++++.. .|+++ -.+..+|-++...|+|++|++.++|+|++ -|++|....+
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 6778888888888864 23444 46778888999999999999999999976 5888876666
Q ss_pred --hhCCHHHHHHHHHHchhhccC
Q 026999 62 --HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 62 --~~Gr~~egi~~le~~~~~w~~ 82 (229)
.+|+++||+..++++......
T Consensus 381 ~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 381 QLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHH
Confidence 699999999999999775444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.1 Score=39.55 Aligned_cols=106 Identities=11% Similarity=-0.010 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhhCCCChhhHHH---hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHH
Q 026999 36 GQMSDAEEAAKKGLKINKHDCWSQHA---HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRK 108 (229)
Q Consensus 36 g~~d~Ae~~a~rAL~LnP~dawA~Ha---~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~ 108 (229)
+++++|.+..++|.+.++.++. +-. ..+..++|+.|++++.. .+...... .++.+|+. .+ ++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~-lg~~y~~g~~~~~A~~~~~~Aa~----~g~~~a~~---~Lg~~y~~G~g~~~-d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC-LSLVSNSQINKQKLFQYLSKACE----LNSGNGCR---FLGDFYENGKYVKK-DLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH-HHHHTCTTSCHHHHHHHHHHHHH----TTCHHHHH---HHHHHHHHCSSSCC-CHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh-HHHHHHcCCCHHHHHHHHHHHHc----CCCHHHHH---HHHHHHHcCCCCCc-cHHH
Confidence 4789999999999999877776 433 45678889999999988 34322333 59999988 65 9999
Q ss_pred HHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHH
Q 026999 109 VLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVA 163 (229)
Q Consensus 109 Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~ 163 (229)
|+++|.+..... ..+|.-.|=.+...|..| ....+.-...+.
T Consensus 80 A~~~~~~Aa~~g-----------~~~a~~~Lg~~y~~G~g~--~~d~~~A~~~~~ 121 (138)
T 1klx_A 80 AAQYYSKACGLN-----------DQDGCLILGYKQYAGKGV--VKNEKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSS--CCCHHHHHHHHH
T ss_pred HHHHHHHHHcCC-----------CHHHHHHHHHHHHCCCCC--CcCHHHHHHHHH
Confidence 999998877542 235566666666777643 444444444433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.035 Score=54.19 Aligned_cols=183 Identities=9% Similarity=0.060 Sum_probs=110.4
Q ss_pred CChhHHH-HHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----------CCCC-------------h
Q 026999 2 GRPDLCF-DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-----------NKHD-------------C 56 (229)
Q Consensus 2 G~~~~~~-~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~L-----------nP~d-------------a 56 (229)
|+...++ ...+|++...|.+..+.-.++-..+..|++++|++..++++.. +|.+ .
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 4555665 7778888777877777777777888888999999999999875 2531 4
Q ss_pred hhHHH----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhh
Q 026999 57 WSQHA----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY 132 (229)
Q Consensus 57 wA~Ha----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~ 132 (229)
|...+ ..|..+++...++++...- + ....++|-..|......+++++.|.++|+..+... +.. ..-.
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~---~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~---~~~w 507 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLK---K-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATD---GEYI 507 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTG---G-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTC---HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc---C-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCc---hHHH
Confidence 66666 5678889999998887621 2 11345555566665555546899999998888762 111 1112
Q ss_pred hhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhh---ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 026999 133 LNALGLLLRVYVRGELDVFGNRLKVLADCVADQAN---WYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 202 (229)
Q Consensus 133 ~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~---~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 202 (229)
+--+-+++++ |- -++=..+.+....... .....|.-..-. =..-|+.+.++.+.+.+.+..
T Consensus 508 ~~y~~fe~~~---~~----~~~AR~lferal~~~~~~~~~~~lw~~~~~f--E~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 508 NKYLDFLIYV---NE----ESQVKSLFESSIDKISDSHLLKMIFQKVIFF--ESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHH---TC----HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH--HHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhC---CC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhC
Confidence 2223333332 21 2455566666555433 122222221111 124577777777777766554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.045 Score=51.17 Aligned_cols=124 Identities=9% Similarity=-0.103 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHH--HHHhh-cCCcc--------------cccc
Q 026999 91 NWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL--LRVYV-RGELD--------------VFGN 153 (229)
Q Consensus 91 ~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLL--wRL~l-~G~~v--------------~vg~ 153 (229)
+|.-+|.++..+| +|++|++.|.+...+. .-..+++++--+ ||+-. .|..+ .-..
T Consensus 150 n~~~LA~~L~~Lg-~yq~AVea~~KA~~~~-------~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 150 NFGRLASTLVHLG-EYQAAVDGARKANSTR-------TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRG 221 (449)
T ss_dssp CHHHHHHHHHTTT-CHHHHHHHHHHHTCHH-------HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhc-cHHHHHHHHHHcCCch-------hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCC
Confidence 6677999999997 9999999998874441 112233333221 00000 00000 0024
Q ss_pred cHHHHHHHHHhhhh---ccccchhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchH-HHHHHHHHHHHHHhhhhhhc
Q 026999 154 RLKVLADCVADQAN---WYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKK-KQELMQTGVQVSSDICLICH 228 (229)
Q Consensus 154 rW~~la~~~~~~~~---~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 228 (229)
+|+++......... .|.-.|.-+ +.+-++-. -+++.+.++.+.++.+-. .-+.+...-...+.+-+|||
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel----~il~~ky~--p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTEL----AILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHH----HHHHHTTC--HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHH----HHHHHhcC--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888877533 344445544 55555544 488999999988765532 22223333333344455544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.022 Score=49.73 Aligned_cols=117 Identities=9% Similarity=0.040 Sum_probs=86.3
Q ss_pred CChhHHHHHHHhhCCCCCC------chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChh------hHHH------hh
Q 026999 2 GRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW------SQHA------HD 63 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~------~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~daw------A~Ha------~~ 63 (229)
|+.+.+.+...++++..+. ...+..++++.....|.+++|.+..++++.+.+...- .... .+
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 7889999999999886443 2246677788888889999999999999988654421 1111 79
Q ss_pred CCHHHHHHHHHHchhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 64 CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~~~-~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
|++++|+..+++........++. ...-.+--.+..|+..| ++++|..+|++.+..
T Consensus 149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR-NLAKSKASLTAARTA 204 (434)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHH
Confidence 99999999999986544433221 12224456788889997 999999999887755
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.018 Score=46.32 Aligned_cols=74 Identities=7% Similarity=-0.113 Sum_probs=48.7
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhC-C-CChhhHHH------hhCCHHHHHHHH
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKIN-K-HDCWSQHA------HDCCFKEAVQFM 73 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g---~~d~Ae~~a~rAL~Ln-P-~dawA~Ha------~~Gr~~egi~~l 73 (229)
..+++...+.++..+.+....+.+|++|..++ +++++....+..+..+ | +....+-- ..|++++|+.++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34555666666666677777777777777766 6667777777777776 5 22222222 577777777777
Q ss_pred HHchh
Q 026999 74 EECSS 78 (229)
Q Consensus 74 e~~~~ 78 (229)
+...+
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77776
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.065 Score=50.06 Aligned_cols=108 Identities=13% Similarity=0.210 Sum_probs=70.5
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---hhCCHHHHHHHHHHch
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA---HDCCFKEAVQFMEECS 77 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---~~Gr~~egi~~le~~~ 77 (229)
+|+..++.+...++ .++...-...|+..+.|++++|...+.. |.++|++...+-. ..|+++|++..+++..
T Consensus 161 Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 161 LGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 57788888888888 3455555566777777777777666663 5566666554333 5677888877777774
Q ss_pred hh------------------------------ccCCCCcch-------hhhHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026999 78 ST------------------------------WSSCSSFMY-------THNWWHVALCYLEGHSPMRKVLEIYDNH 116 (229)
Q Consensus 78 ~~------------------------------w~~~~~~~~-------~H~~WHlAL~~l~~gg~~d~Al~~yd~~ 116 (229)
.. |+..| ..+ .|.|=-+...|++-+ +||.|+...-.+
T Consensus 235 ~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in-i~k~~~~~~~~~~w~e~~~ly~~~~-e~d~A~~tm~~h 308 (449)
T 1b89_A 235 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN-IPKVLRAAEQAHLWAELVFLYDKYE-EYDNAIITMMNH 308 (449)
T ss_dssp TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC-HHHHHHHHHTTTCHHHHHHHHHHTT-CHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHhC
Confidence 31 55555 333 567777777777775 888777655443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.068 Score=42.86 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 026999 37 QMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 37 ~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d 107 (229)
....+++...+.++.+|.+.-+.-. ..+..++||..++...+.. +|-...-.+-++|+.|+.+| +|+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~---~p~~~rd~lY~LAv~~~kl~-~Y~ 88 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLK-EYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CccchHHHHHHHHHHHHHcc-CHH
Confidence 4567888899999988887766555 3457889999999998854 12111223357999999997 999
Q ss_pred HHHHHHHhhchh
Q 026999 108 KVLEIYDNHIWK 119 (229)
Q Consensus 108 ~Al~~yd~~i~~ 119 (229)
+|++.+++.+..
T Consensus 89 ~A~~y~~~lL~i 100 (152)
T 1pc2_A 89 KALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999987
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.7 Score=44.99 Aligned_cols=179 Identities=12% Similarity=-0.052 Sum_probs=109.7
Q ss_pred HHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHH-HHHHHHHhhCCCCh--hhHHH----hhCCHHHHHHHHHHchhh
Q 026999 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAE-EAAKKGLKINKHDC--WSQHA----HDCCFKEAVQFMEECSST 79 (229)
Q Consensus 7 ~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae-~~a~rAL~LnP~da--wA~Ha----~~Gr~~egi~~le~~~~~ 79 (229)
.+..-++++-..|.++-+-.++|--+...|+.++|. +..+||+..+|++. |-..+ ..|+++++...++++...
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455666666666666666666688889999996 99999999999986 33333 689999999999998763
Q ss_pred cc--------CCCC---------cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh-hccCCCCCchhhhhhHHHHHHH
Q 026999 80 WS--------SCSS---------FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK-ELEKPDAVHPEVYLNALGLLLR 141 (229)
Q Consensus 80 w~--------~~~~---------~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~-~~~~~~~~~~~~~~Da~sLLwR 141 (229)
-. ..+. +-..-+|=..+-+....| ..++|.++|++.+.. .. .....++..+.|-++
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~-~l~~AR~vf~~A~~~~~~-----~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ-GLAASRKIFGKCRRLKKL-----VTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHTGGG-----SCTHHHHHHHHHHHT
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHHH
Confidence 21 0010 001224555666655565 799999999998764 11 124456776666666
Q ss_pred HhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 026999 142 VYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLK 199 (229)
Q Consensus 142 L~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 199 (229)
+ |-+ .++-..|.+.....+++..... +.|+--+...|+.+.++.+.+..-
T Consensus 482 ~---~~d---~e~Ar~ife~~Lk~~p~~~~~w--~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 482 I---SKD---TKTACKVLELGLKYFATDGEYI--NKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp T---TSC---CHHHHHHHHHHHHHHTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred h---CCC---HHHHHHHHHHHHHHCCCchHHH--HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4 222 2344555554444433222111 122222334578888888877543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=94.02 E-value=0.49 Score=41.92 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=72.5
Q ss_pred HHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--CChhhHHH------hhCCHHHHHHHHHHchhh
Q 026999 8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK--HDCWSQHA------HDCCFKEAVQFMEECSST 79 (229)
Q Consensus 8 ~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP--~dawA~Ha------~~Gr~~egi~~le~~~~~ 79 (229)
+...++.+...+.....+.++|-++...|++++|.+...++|..+| ++.-+.-. ..||+++|...+++....
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3455666655445566677999999999999999999999999998 44433333 799999999999876541
Q ss_pred -----ccCCCCcchhhhHHHHHHH--HHh-CCCCHHHHHHHHHhhch
Q 026999 80 -----WSSCSSFMYTHNWWHVALC--YLE-GHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 80 -----w~~~~~~~~~H~~WHlAL~--~l~-~gg~~d~Al~~yd~~i~ 118 (229)
|....... -++-. .+. .|+++.+|..+|++...
T Consensus 166 ~~d~~~~~d~~l~------~Laea~v~l~~g~~~~q~A~~~f~El~~ 206 (310)
T 3mv2_B 166 IEDTVSGDNEMIL------NLAESYIKFATNKETATSNFYYYEELSQ 206 (310)
T ss_dssp SCHHHHHHHHHHH------HHHHHHHHHHHTCSTTTHHHHHHHHHHT
T ss_pred CccccccchHHHH------HHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 33322111 13333 332 23489999999988543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=92.62 E-value=1.2 Score=47.36 Aligned_cols=135 Identities=16% Similarity=0.221 Sum_probs=86.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCH
Q 026999 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 106 (229)
Q Consensus 28 ~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~ 106 (229)
.|-.+.+.|+|++|.+..+++- ++.++..+-- ..|++++|++++++... .-.|-.+|-+++..| ++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~--~~~~A~~VLie~i~nldrAiE~Aervn~----------p~vWsqLAKAql~~G-~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD--VNTSAVQVLIEHIGNLDRAYEFAERCNE----------PAVWSQLAKAQLQKG-MV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHHHHHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCC-CH
Confidence 3778899999999999999983 3333322222 78999999999986622 133447999999986 99
Q ss_pred HHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhccccchhhHHHHHHHhcCC
Q 026999 107 RKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTG 186 (229)
Q Consensus 107 d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~~F~d~H~~~al~~ag 186 (229)
++|++.|.+. + ....+.+-+.-+-+ -.+|+++-.+...-..-...+..|...+.++++.+
T Consensus 1122 kEAIdsYiKA--------d--D~say~eVa~~~~~----------lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1122 KEAIDSYIKA--------D--DPSSYMEVVQAANT----------SGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHHhc--------C--ChHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 9999999552 1 12223332222211 24688887777552222222344555777788877
Q ss_pred CcHHHHHHH
Q 026999 187 EVSKAEDLL 195 (229)
Q Consensus 187 ~~~~~~~ll 195 (229)
+.++++..+
T Consensus 1182 rleele~fI 1190 (1630)
T 1xi4_A 1182 RLAELEEFI 1190 (1630)
T ss_pred CHHHHHHHH
Confidence 766655554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=92.50 E-value=0.54 Score=43.52 Aligned_cols=107 Identities=11% Similarity=0.105 Sum_probs=68.7
Q ss_pred HHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------------------------
Q 026999 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------------------ 61 (229)
Q Consensus 6 ~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------------------ 61 (229)
+.+..-++++-..|.++.+--+++--+...|+.++|....+||+.. |++..-.-+
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccc
Confidence 3445566666655666666666666678899999999999999999 998532222
Q ss_pred ----------------------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 ----------------------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ----------------------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|..+.+...++++ . .++. ..|.|.-.|.+.+..+++.+.|.++|+..+..
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----NEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----TSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----CCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 134455566666666 2 1222 34565555655554443578888888777765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.96 E-value=0.64 Score=36.02 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 026999 37 QMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 107 (229)
Q Consensus 37 ~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d 107 (229)
....+++...++++.++...-+.-. ...+..+||..|+.-.+. .+|...--..-++|+.|+.+| +|+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~---~~p~~~Rd~lY~LAvg~yklg-~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---GSKEEQRDYVFYLAVGNYRLK-EYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---SCHHHHHHHHHHHHHHHHHTT-CHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHhh-hHH
Confidence 4556788888888877755444333 455567799999998872 223222234457999999997 999
Q ss_pred HHHHHHHhhchh
Q 026999 108 KVLEIYDNHIWK 119 (229)
Q Consensus 108 ~Al~~yd~~i~~ 119 (229)
+|++.++..+..
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999887
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=91.67 E-value=1.8 Score=40.24 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhh--CCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHH-HHHhCCCCHHH
Q 026999 38 MSDAEEAAKKGLKI--NKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL-CYLEGHSPMRK 108 (229)
Q Consensus 38 ~d~Ae~~a~rAL~L--nP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL-~~l~~gg~~d~ 108 (229)
+++|.++.++-.+- .||. -...+ ..|++++|..++++... .+ +.|....|..-+ .|...| +.++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g-~~Pd~~tyn~lI~~~~~~g-~~~~ 158 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNE-ATFTNGARLAVAKDDPEMAFDMVKQMKA----FG-IQPRLRSYGPALFGFCRKG-DADK 158 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHH----TT-CCCCHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCccceehHHHHHHHHCC-CHHH
Confidence 56666666554432 3432 23333 57777777777777654 11 112222222222 333444 7777
Q ss_pred HHHHHHhhchhhccCCCCCchhhhh----------hHHHHHHHHhhcCCcccccccHHHHHHH
Q 026999 109 VLEIYDNHIWKELEKPDAVHPEVYL----------NALGLLLRVYVRGELDVFGNRLKVLADC 161 (229)
Q Consensus 109 Al~~yd~~i~~~~~~~~~~~~~~~~----------Da~sLLwRL~l~G~~v~vg~rW~~la~~ 161 (229)
|+++|+..+..+..+ +...+..++ .|..+|-+|.=.|..+ -..-+..|-+.
T Consensus 159 A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~ 219 (501)
T 4g26_A 159 AYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEW 219 (501)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHH
Confidence 777777776665422 222233333 3445666666666643 13334444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=91.65 E-value=4.6 Score=37.36 Aligned_cols=156 Identities=9% Similarity=0.003 Sum_probs=90.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhh--CCCChhhHHH---------------hhCCHHHHHHHHHHchhhccCCCCcchhhhHH
Q 026999 31 SLLELGQMSDAEEAAKKGLKI--NKHDCWSQHA---------------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW 93 (229)
Q Consensus 31 ~L~e~g~~d~Ae~~a~rAL~L--nP~dawA~Ha---------------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~W 93 (229)
++...|++++|.++.++..+. .|+ .....+ ..|..++|.+.+++.... + ..|.-..|
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~----G-~~Pd~~ty 108 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD----K-VVPNEATF 108 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT----T-CCCCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh----C-CCCCHHHH
Confidence 456789999999999888764 443 333333 134478899988887652 2 11222222
Q ss_pred -HHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhhcccc-
Q 026999 94 -HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLE- 171 (229)
Q Consensus 94 -HlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~~~~~- 171 (229)
-+--.|...| +.++|+++|+........ .+...++.++++ +--.| ++++....+..-...+..
T Consensus 109 n~lI~~~~~~g-~~~~A~~l~~~M~~~g~~-Pd~~tyn~lI~~------~~~~g-------~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 109 TNGARLAVAKD-DPEMAFDMVKQMKAFGIQ-PRLRSYGPALFG------FCRKG-------DADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHHTTCC-CCHHHHHHHHHH------HHHTT-------CHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHcCCC-CccceehHHHHH------HHHCC-------CHHHHHHHHHHHHhcCCCC
Confidence 2444455665 999999999988776542 111122222222 22222 233333333332222221
Q ss_pred ---chhhHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCchHH
Q 026999 172 ---CHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKK 209 (229)
Q Consensus 172 ---~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~ 209 (229)
.|+-+ +-+++++|+.+.+.++++.|++.........
T Consensus 174 d~~ty~~L--i~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 174 EEPELAAL--LKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp CHHHHHHH--HHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred CHHHHHHH--HHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 23322 5578899999999999999999876644443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.53 E-value=1.1 Score=36.49 Aligned_cols=84 Identities=17% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCChhh-----------HHH----hhCCHHHHHHHHHHchhhccCC------------
Q 026999 31 SLLELGQMSDAEEAAKKGLKINKHDCWS-----------QHA----HDCCFKEAVQFMEECSSTWSSC------------ 83 (229)
Q Consensus 31 ~L~e~g~~d~Ae~~a~rAL~LnP~dawA-----------~Ha----~~Gr~~egi~~le~~~~~w~~~------------ 83 (229)
.+.+.|.|+-|+-++..++.+..+++.+ ..+ .+|++..|...++++...-...
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~ 108 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN 108 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 3556777777777777766666555542 222 5777777777777652221110
Q ss_pred --------CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHh
Q 026999 84 --------SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 115 (229)
Q Consensus 84 --------~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~ 115 (229)
+.+--.-+-..+|.||++++ ++++|+.+...
T Consensus 109 ~ss~p~s~~~~~e~Elkykia~C~~~l~-~~~~Ai~~Le~ 147 (167)
T 3ffl_A 109 SASTPQSQCLPSEIEVKYKLAECYTVLK-QDKDAIAILDG 147 (167)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTT-CHHHHHHHHHT
T ss_pred cCCCcccccccchHHHHHHHHHHHHHHC-CHHHHHHHHhc
Confidence 00111234456999999998 99999999855
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.27 E-value=0.57 Score=36.29 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=41.6
Q ss_pred HHHHHHhhCCCC-C-CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH
Q 026999 7 CFDIIHQVLPYN-Q-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (229)
Q Consensus 7 ~~~~~~ralp~~-~-~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~ 59 (229)
.....+..+... | ..--.+..+|+++...|+|++|.+..++.|+++|+|.-|.
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 445555555544 3 3445788999999999999999999999999999997664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.62 E-value=0.55 Score=36.87 Aligned_cols=53 Identities=4% Similarity=-0.110 Sum_probs=43.3
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
...+..+||..|+.-.+ .+|-..--.+..+|+.|+.+| +|++|++..+..+..
T Consensus 55 ~~~d~~~GI~LLe~l~~----~~~~~~Rd~LYyLAvg~yklg-dY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 55 DVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHh----cCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhh
Confidence 56677899999999877 344334557778999999997 999999999988876
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.20 E-value=1.2 Score=35.02 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=39.2
Q ss_pred HHHHHhhCCCCCC-chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH
Q 026999 8 FDIIHQVLPYNQQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60 (229)
Q Consensus 8 ~~~~~ralp~~~~-~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H 60 (229)
....+..+...|. .--.+..+|+|+-..|+|++|.+..++.|+++|+|.-|.-
T Consensus 63 I~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 63 VKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3333444443442 3456778899999999999999999999999999976654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.63 E-value=1.2 Score=35.44 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=37.6
Q ss_pred HHHhhCCCCC-CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH
Q 026999 10 IIHQVLPYNQ-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60 (229)
Q Consensus 10 ~~~ralp~~~-~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H 60 (229)
..+..+...| ..--.+..+|+++-..|+|++|.+..++.|+++|+|..|.-
T Consensus 64 LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 64 ILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3333333334 23356778899999999999999999999999999976653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.25 E-value=2 Score=34.08 Aligned_cols=53 Identities=4% Similarity=-0.110 Sum_probs=41.9
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
...+..+||..|+.-.+ .+|...--..-.+|+.|+.+| +|++|++..+..+..
T Consensus 54 ~~~di~~GI~LLe~l~~----~~~~~~RdcLYyLAvg~ykl~-~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 54 DVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEH 106 (144)
T ss_dssp SHHHHHHHHHHHHHHHH----HCCSTHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHh----cCccchhHHHHHHHHHHHHhh-hHHHHHHHHHHHHhc
Confidence 56778899999999887 233223334457999999997 999999999998877
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=83.24 E-value=4.4 Score=32.66 Aligned_cols=92 Identities=14% Similarity=0.003 Sum_probs=66.0
Q ss_pred hHHHHHHHhhCCCC--------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--hhhHHH----hhCCHHHHH
Q 026999 5 DLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHA----HDCCFKEAV 70 (229)
Q Consensus 5 ~~~~~~~~ralp~~--------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d--awA~Ha----~~Gr~~egi 70 (229)
++.++.-+|++..- ..|.|+.--+|. +++.++.++|+...+.++.+..+. .|..+| .+|+.+.|.
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR 114 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK 114 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence 66667666666533 335555555553 478899999999999999997777 455555 799999999
Q ss_pred HHHHHchhhccCCCCcchhhhHHHHHHHHHhCC
Q 026999 71 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH 103 (229)
Q Consensus 71 ~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~g 103 (229)
..|.+++. .+|. +... =-.|+.-|..|
T Consensus 115 kILg~AiG----~~~k-~~~~-le~a~~nl~~~ 141 (161)
T 4h7y_A 115 QLLQKAVE----RGAV-PLEM-LEIALRNLNLQ 141 (161)
T ss_dssp HHHHHHHH----TTCB-CHHH-HHHHHHHHHTT
T ss_pred HHHHHHhc----cCCC-cHHH-HHHHHHhhhcC
Confidence 99999998 5654 3332 13666666665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.73 E-value=6.4 Score=35.11 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=58.8
Q ss_pred HhCCHHHHHHHHHHHHhhCCC--------ChhhHHH--------------------hhCCHHHHHHHHHHchhhccCCCC
Q 026999 34 ELGQMSDAEEAAKKGLKINKH--------DCWSQHA--------------------HDCCFKEAVQFMEECSSTWSSCSS 85 (229)
Q Consensus 34 e~g~~d~Ae~~a~rAL~LnP~--------dawA~Ha--------------------~~Gr~~egi~~le~~~~~w~~~~~ 85 (229)
..|+.++|.+..++||++=.. ..|+... ..|++++++..++.... ..|
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~----~~P 202 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF----EHP 202 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HST
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC
Confidence 357888888888999988533 3465432 48999999999999877 455
Q ss_pred cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 86 FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 86 ~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
+ .-..|-.+-.++...| +..+|++.|++.-.
T Consensus 203 ~-~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 203 Y-REPLWTQLITAYYLSD-RQSDALGAYRRVKT 233 (388)
T ss_dssp T-CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 4 4456667777877886 99999999966433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=82.52 E-value=7.7 Score=35.64 Aligned_cols=74 Identities=7% Similarity=-0.145 Sum_probs=53.5
Q ss_pred hCCHHHHHHHHHHHHhhCCCC---hhhHHH----hhC-CHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCH
Q 026999 35 LGQMSDAEEAAKKGLKINKHD---CWSQHA----HDC-CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 106 (229)
Q Consensus 35 ~g~~d~Ae~~a~rAL~LnP~d---awA~Ha----~~G-r~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~ 106 (229)
.+..++|.+...+| . .|+. .|..-+ ..| +++.|...++.....++. . + -+||-.+-+....| +.
T Consensus 299 ~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~---~-~~~~~yid~e~~~~-~~ 370 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-S---T-LLKEEFFLFLLRIG-DE 370 (493)
T ss_dssp HHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-C---H-HHHHHHHHHHHHHT-CH
T ss_pred cCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-C---H-HHHHHHHHHHHHcC-CH
Confidence 56789999999999 3 4542 232223 234 699999999999886544 2 2 35777788878886 99
Q ss_pred HHHHHHHHhh
Q 026999 107 RKVLEIYDNH 116 (229)
Q Consensus 107 d~Al~~yd~~ 116 (229)
+.|..+|++.
T Consensus 371 ~~aR~l~er~ 380 (493)
T 2uy1_A 371 ENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 9999999774
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.02 E-value=9.9 Score=33.88 Aligned_cols=77 Identities=10% Similarity=-0.081 Sum_probs=57.2
Q ss_pred CChhHHHHHHHhhCCCCCC--------chhH--------------HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhH
Q 026999 2 GRPDLCFDIIHQVLPYNQQ--------EDFI--------------FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~--------~~~~--------------~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~ 59 (229)
|+...+.+...+++..|.+ ++++ .--++-.+.+.|++++|....+++++.+|-+-.++
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~ 208 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW 208 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5667777888888887642 1221 11233355678999999999999999999996544
Q ss_pred HH------hhCCHHHHHHHHHHchh
Q 026999 60 HA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 60 Ha------~~Gr~~egi~~le~~~~ 78 (229)
-. ..||..+|++..++..+
T Consensus 209 ~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 209 TQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33 69999999999988866
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.85 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.78 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.76 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.72 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.68 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.67 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.64 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.59 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.56 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.49 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.48 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.25 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.09 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.01 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.93 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.81 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.77 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.75 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 97.72 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.7 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 97.69 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.69 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.66 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.66 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.59 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.58 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.57 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.57 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.51 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.44 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.21 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.94 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.78 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.22 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.19 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 95.77 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.96 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.82 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.8 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 81.38 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.5e-08 Score=83.98 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=62.5
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.+.+.....++....+..+..+..+|.++...|++++|++..++|++++|+++.++.. .+|++++|+..++.
T Consensus 217 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 296 (388)
T d1w3ba_ 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555566666666666566666666666666666666666666666666666666555544 45666666666555
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
.....+. ....+..++..+...| ++++|++.|++.+.
T Consensus 297 ~~~~~~~-----~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 297 ALRLCPT-----HADSLNNLANIKREQG-NIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHCTT-----CHHHHHHHHHHHHTTT-CHHHHHHHHHHHTT
T ss_pred hhccCCc-----cchhhhHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence 5542111 1233344555555554 56666666655543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2.6e-08 Score=82.41 Aligned_cols=112 Identities=11% Similarity=0.068 Sum_probs=67.7
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+...+....++++..+|+++.++..+|-.+...|++++|++..++++.++|.++..... .+|++++|+..+++
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 262 (388)
T d1w3ba_ 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555666666666666666666666666666666666666666666666666666655543 46666666666666
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.. .+|.. .-.+..+|..+...| ++++|++.|+..+..
T Consensus 263 al~----~~p~~-~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 300 (388)
T d1w3ba_ 263 AIE----LQPHF-PDAYCNLANALKEKG-SVAEAEDCYNTALRL 300 (388)
T ss_dssp HHH----TCSSC-HHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHH----hCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHhhhcc
Confidence 655 22221 223445666666665 666666666655443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=7.4e-08 Score=82.56 Aligned_cols=112 Identities=12% Similarity=0.117 Sum_probs=100.8
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g-~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+..++++....+++..+|.+..+....|.++...| ++++|.+..+++|+++|++.++++. ..|++++|+.+++
T Consensus 57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~ 136 (315)
T d2h6fa1 57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA 136 (315)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHh
Confidence 56789999999999999999999999999999887 5999999999999999999999998 7899999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++.+ .+|- ..|.|-|++.++...| ++++|+..|++.|..
T Consensus 137 kal~----~dp~-n~~a~~~~~~~~~~~~-~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 137 DILN----QDAK-NYHAWQHRQWVIQEFK-LWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHH----HCTT-CHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHH
T ss_pred hhhh----hhhc-chHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 9998 4443 3578889999999997 999999999999886
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.5e-08 Score=75.00 Aligned_cols=87 Identities=10% Similarity=0.060 Sum_probs=68.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 27 ~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
..|..+...|+|++|+...+++|.++|+++.++.. ..|++++|+...++++. .+|-. .-.|..+|.++.
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~-~~~~~~~g~~~~ 82 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD----LKPDW-GKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHH----hccch-hhHHHHHHHHHH
Confidence 45667788888888888888888888888877666 78888888888888887 33321 234567888888
Q ss_pred hCCCCHHHHHHHHHhhchh
Q 026999 101 EGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~ 119 (229)
.+| ++++|+..|++.|..
T Consensus 83 ~~~-~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 83 FLN-RFEEAKRTYEEGLKH 100 (117)
T ss_dssp HTT-CHHHHHHHHHHHHTT
T ss_pred Hcc-CHHHHHHHHHHHHHh
Confidence 886 899999999888887
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=8.4e-08 Score=76.85 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=93.2
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.||.+.+++...++.| .++.++..+|.++...|+|++|++...+||+++|+++-++.. .+|++++|+..++
T Consensus 18 ~~d~~~Al~~~~~i~~---~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (192)
T d1hh8a_ 18 KKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 94 (192)
T ss_dssp TTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 4889999999988754 456678899999999999999999999999999999988877 7999999999999
Q ss_pred HchhhccCCCCc------------chhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSF------------MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~------------~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++...-.. |+. ...-.+..+|+++...| ++++|++.|...+.-
T Consensus 95 kAl~~~~~-n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~-~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 95 EALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-EWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHhCcc-CchHHHHHhhhhcccchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 98652211 211 11234567999999997 999999999987764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=1.8e-08 Score=81.27 Aligned_cols=109 Identities=9% Similarity=0.005 Sum_probs=87.3
Q ss_pred hHHHHHHHhhCCC----CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 5 DLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 5 ~~~~~~~~ralp~----~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
+.++....+++.. .+..+.++..+|.++...|+|++|++..++||+++|+++.++.. .+|++++|+..++
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 3444555555543 33466788889999999999999999999999999999998877 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
++... +|.. .-.+.++|.++...| ++++|++.|++.+..
T Consensus 96 ~al~~----~p~~-~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 96 SVLEL----DPTY-NYAHLNRGIALYYGG-RDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHH----CTTC-THHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHH----Hhhh-hhhHHHHHHHHHHHh-hHHHHHHHHHHHHhh
Confidence 99883 3321 124457999999997 999999999988876
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.72 E-value=2.5e-08 Score=73.26 Aligned_cols=86 Identities=10% Similarity=-0.030 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHH
Q 026999 26 GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCY 99 (229)
Q Consensus 26 g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~ 99 (229)
...|..+...|++++|+...+++|+++|++++++.. ..|++++|+..++++.. .+|- ..-.|..+|.+|
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~-~~~a~~~la~~y 94 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDPK-DIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccc----cccc-cccchHHHHHHH
Confidence 346778999999999999999999999999999988 79999999999999988 4443 224556799999
Q ss_pred HhCCCCHHHHHHHHHhhc
Q 026999 100 LEGHSPMRKVLEIYDNHI 117 (229)
Q Consensus 100 l~~gg~~d~Al~~yd~~i 117 (229)
...| ++++|++.+++.|
T Consensus 95 ~~~g-~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEH-NANAALASLRAWL 111 (112)
T ss_dssp HHHH-HHHHHHHHHHHHH
T ss_pred HHCC-CHHHHHHHHHHHh
Confidence 9997 9999999998754
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=5.5e-08 Score=74.86 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=69.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++..-.+++..+|.++.++.++|..+...|++++|+...++||+++|+++-+++. ..|++++|+..++
T Consensus 23 ~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~ 102 (159)
T d1a17a_ 23 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 102 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3788889999999999999999999999999999999999999999999999999888776 7899999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 103 ~a~~ 106 (159)
T d1a17a_ 103 TVVK 106 (159)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9887
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1.6e-07 Score=69.22 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=75.8
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+.....+++..+|.++.++..+|.++...|++++|+....+++.++|+++.+++. ..|++++|+..++
T Consensus 16 ~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 95 (117)
T d1elwa_ 16 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 95 (117)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999988 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 96 ~a~~ 99 (117)
T d1elwa_ 96 EGLK 99 (117)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9998
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=5.1e-08 Score=81.06 Aligned_cols=110 Identities=9% Similarity=0.032 Sum_probs=92.3
Q ss_pred hhHHHHHHHhhCCCCCC--chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 4 PDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~--~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
...+.....+++..+|. ++.++..+|..+...|++++|+...++++.++|+++.++.. .+|++++|+..+++
T Consensus 152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 231 (323)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHH
Confidence 44566677777776664 56788889999999999999999999999999999988876 79999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.. .+|-. .-.|..+|.+|...| ++++|++.|++.|.-
T Consensus 232 al~----~~p~~-~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 232 ALE----LQPGY-IRSRYNLGISCINLG-AHREAVEHFLEALNM 269 (323)
T ss_dssp HHH----HCTTC-HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHH----Hhhcc-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 987 34332 235568999999997 999999999998875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.67 E-value=1.3e-07 Score=73.41 Aligned_cols=88 Identities=8% Similarity=-0.023 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHH
Q 026999 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 98 (229)
Q Consensus 25 ~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~ 98 (229)
+--.|-.+...|+|++|+...++||+++|+++.++.. ..|++++|+..+++++. .+|-. ...|-++|.+
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~----l~p~~-~~a~~~lg~~ 81 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQS-VKAHFFLGQC 81 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH----hCCCc-HHHHHHHHHH
Confidence 3345667778899999999999999999999877765 78999999999999887 44432 2334579999
Q ss_pred HHhCCCCHHHHHHHHHhhch
Q 026999 99 YLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 99 ~l~~gg~~d~Al~~yd~~i~ 118 (229)
|+.+| ++++|+..|.+.+.
T Consensus 82 ~~~l~-~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEME-SYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTT-CHHHHHHHHHHHHH
T ss_pred HHHCC-CHHHHHHHHHHHHH
Confidence 99987 89999999987664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=4.7e-07 Score=75.03 Aligned_cols=179 Identities=8% Similarity=-0.027 Sum_probs=122.3
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.+....++++..+|.++.++..+|.++...|++++|.....+|++++|+++.++.. ..|++++++..++
T Consensus 32 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 111 (323)
T d1fcha_ 32 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 111 (323)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchh
Confidence 4899999999999999999999999999999999999999999999999999999988776 7899999998888
Q ss_pred HchhhccC---------------------------------------------CCC-cchhhhHHHHHHHHHhCCCCHHH
Q 026999 75 ECSSTWSS---------------------------------------------CSS-FMYTHNWWHVALCYLEGHSPMRK 108 (229)
Q Consensus 75 ~~~~~w~~---------------------------------------------~~~-~~~~H~~WHlAL~~l~~gg~~d~ 108 (229)
++...-+. .+| ......+..+|..+...| ++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-~~~~ 190 (323)
T d1fcha_ 112 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDK 190 (323)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHH
T ss_pred hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH-HHhh
Confidence 76432111 000 111234567888888987 9999
Q ss_pred HHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHHHHHhhhh-ccccchhhHHH--HHHHhcC
Q 026999 109 VLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQAN-WYLECHLDLLI--LWALANT 185 (229)
Q Consensus 109 Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~~~~~~~~-~~~~~F~d~H~--~~al~~a 185 (229)
|+..|++.+... +. ....+.+-+.++.++ .++++-.+....-.. ++. +.++|+ ..++...
T Consensus 191 A~~~~~~al~~~--p~---~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~ 253 (323)
T d1fcha_ 191 AVDCFTAALSVR--PN---DYLLWNKLGATLANG----------NQSEEAVAAYRRALELQPG--YIRSRYNLGISCINL 253 (323)
T ss_dssp HHHHHHHHHHHC--TT---CHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred hhcccccccccc--cc---cccchhhhhhccccc----------ccchhHHHHHHHHHHHhhc--cHHHHHHHHHHHHHC
Confidence 999999887652 21 122222322222221 234444444333221 222 334454 5566777
Q ss_pred CCcHHHHHHHHH
Q 026999 186 GEVSKAEDLLKG 197 (229)
Q Consensus 186 g~~~~~~~ll~~ 197 (229)
|+.+.+.+.+..
T Consensus 254 g~~~~A~~~~~~ 265 (323)
T d1fcha_ 254 GAHREAVEHFLE 265 (323)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 887766554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.64 E-value=3.6e-08 Score=72.44 Aligned_cols=77 Identities=10% Similarity=-0.007 Sum_probs=73.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+...+....++++..+|.++.++..+|.++...|++++|+...++||+++|+++.++.. .+|+.++|++.++
T Consensus 29 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~ 108 (112)
T d1hxia_ 29 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 108 (112)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999888 7999999999998
Q ss_pred Hch
Q 026999 75 ECS 77 (229)
Q Consensus 75 ~~~ 77 (229)
+++
T Consensus 109 ~~l 111 (112)
T d1hxia_ 109 AWL 111 (112)
T ss_dssp HHH
T ss_pred HHh
Confidence 863
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=7.3e-07 Score=76.13 Aligned_cols=116 Identities=9% Similarity=0.057 Sum_probs=94.1
Q ss_pred CCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhC-CHHHHHHHHHHchhhccCCCCcchh
Q 026999 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDC-CFKEAVQFMEECSSTWSSCSSFMYT 89 (229)
Q Consensus 17 ~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~G-r~~egi~~le~~~~~w~~~~~~~~~ 89 (229)
..|++..+++.++.++...+.+++|.+..++||++||++.-++.. ..| +.++++.+.+++.. .+|- ..
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~----~~p~-~~ 112 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQPK-NY 112 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTT-CH
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH----HHHh-hh
Confidence 356778899999999999999999999999999999999988877 345 58999999999988 4543 35
Q ss_pred hhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHh
Q 026999 90 HNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY 143 (229)
Q Consensus 90 H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~ 143 (229)
..|.|.+..+..+| ++++|++.|++.|... +. ......+-..++.++.
T Consensus 113 ~a~~~~~~~~~~l~-~~~eAl~~~~kal~~d--p~---n~~a~~~~~~~~~~~~ 160 (315)
T d2h6fa1 113 QVWHHRRVLVEWLR-DPSQELEFIADILNQD--AK---NYHAWQHRQWVIQEFK 160 (315)
T ss_dssp HHHHHHHHHHHHHT-CCTTHHHHHHHHHHHC--TT---CHHHHHHHHHHHHHHT
T ss_pred hHHHHHhHHHHhhc-cHHHHHHHHhhhhhhh--hc---chHHHHHHHHHHHHHH
Confidence 67789999999997 9999999999999873 22 3445556555665553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=9.5e-08 Score=74.31 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=73.9
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+++.|+....+++..+|.++.++.++|.++...|+|++|+..+++||+++|+++.++.. ..|++++|+..++
T Consensus 17 ~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~ 96 (201)
T d2c2la1 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 96 (201)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999987765 7999999999999
Q ss_pred Hchh
Q 026999 75 ECSS 78 (229)
Q Consensus 75 ~~~~ 78 (229)
++..
T Consensus 97 ~al~ 100 (201)
T d2c2la1 97 RAYS 100 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=2.4e-07 Score=74.44 Aligned_cols=109 Identities=14% Similarity=0.032 Sum_probs=88.0
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFME 74 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le 74 (229)
.|+.+.++....+++..+|+++.++..+|.++.+.|++++|++..++|++++|+++.++-. .+|++++|+..++
T Consensus 50 ~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 129 (259)
T d1xnfa_ 50 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 129 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999988765 7999999999999
Q ss_pred HchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHh
Q 026999 75 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 115 (229)
Q Consensus 75 ~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~ 115 (229)
++.+.-+. ....+. ++++.+...+ ..+....+...
T Consensus 130 ~al~~~p~---~~~~~~--~~~~~~~~~~-~~~~~~~~~~~ 164 (259)
T d1xnfa_ 130 AFYQDDPN---DPFRSL--WLYLAEQKLD-EKQAKEVLKQH 164 (259)
T ss_dssp HHHHHCTT---CHHHHH--HHHHHHHHHC-HHHHHHHHHHH
T ss_pred HHHhhccc---cHHHHH--HHHHHHHHhh-hHHHHHHHHHH
Confidence 99873222 212233 3556666654 54555444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=5.5e-07 Score=69.02 Aligned_cols=87 Identities=11% Similarity=0.131 Sum_probs=74.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHH
Q 026999 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 100 (229)
Q Consensus 27 ~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l 100 (229)
..|-.+...|+|++|+...++||+++|+++.++.. ..|++++|+..+++++. .+|- ..-.|..+|.++.
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~----~~p~-~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE----LDKK-YIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHH----Hccc-chHHHHHHHHHHH
Confidence 45556779999999999999999999999998887 79999999999999988 4443 1234556999999
Q ss_pred hCCCCHHHHHHHHHhhchh
Q 026999 101 EGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 101 ~~gg~~d~Al~~yd~~i~~ 119 (229)
.+| ++++|++.|++.+..
T Consensus 90 ~~g-~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 90 ALG-KFRAALRDYETVVKV 107 (159)
T ss_dssp HTT-CHHHHHHHHHHHHHH
T ss_pred HcC-CHHHHHHHHHHHHHc
Confidence 997 999999999998876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.4e-07 Score=69.68 Aligned_cols=83 Identities=11% Similarity=0.040 Sum_probs=69.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCChhhHHH---------hhCCHHHHHHHHHHchhhccCCCCcchhh--hHHHHHHHH
Q 026999 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHA---------HDCCFKEAVQFMEECSSTWSSCSSFMYTH--NWWHVALCY 99 (229)
Q Consensus 31 ~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha---------~~Gr~~egi~~le~~~~~w~~~~~~~~~H--~~WHlAL~~ 99 (229)
.+...+++++||+..++||+++|+++-+... ..++.++|+..+++... .+|- +.| .+..+|.+|
T Consensus 8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~----~~~~-~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP----KGSK-EEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT----TSCH-HHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh----ccCC-chHHHHHHHHHHHH
Confidence 5667889999999999999999999988776 24566789999999886 3332 333 667899999
Q ss_pred HhCCCCHHHHHHHHHhhchh
Q 026999 100 LEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 100 l~~gg~~d~Al~~yd~~i~~ 119 (229)
..+| +|++|++.|++.+.-
T Consensus 83 ~~~g-~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLK-EYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTT-CHHHHHHHHHHHHHH
T ss_pred HHHh-hhHHHHHHHHHHHHh
Confidence 9997 999999999999886
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=2.1e-05 Score=63.20 Aligned_cols=119 Identities=11% Similarity=-0.065 Sum_probs=92.1
Q ss_pred CCChhHHHHHHHhhCCCCCCch-----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------------hh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED-----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------HD 63 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~-----~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------~~ 63 (229)
.|+.+.++...++++...|++. .++.++|.++...|++++|++..++++++.|........ ..
T Consensus 25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (366)
T d1hz4a_ 25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 104 (366)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 4899999999999998877643 478889999999999999999999999998766432222 68
Q ss_pred CCHHHHHHHHHHchhhccCCC-C--cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 64 CCFKEAVQFMEECSSTWSSCS-S--FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 64 Gr~~egi~~le~~~~~w~~~~-~--~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
|++.+++..+.++........ + .......-.+|..+...| +++++...|...+...
T Consensus 105 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~a~~~~~~~~~~~ 163 (366)
T d1hz4a_ 105 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVL 163 (366)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc-chhhhHHHHHHHHHHh
Confidence 999999999998865443321 1 112224445788889987 9999999998887763
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=9.1e-06 Score=60.30 Aligned_cols=92 Identities=7% Similarity=0.095 Sum_probs=71.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCC--cchhhhHHHHHHH
Q 026999 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSS--FMYTHNWWHVALC 98 (229)
Q Consensus 27 ~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~--~~~~H~~WHlAL~ 98 (229)
-+|-.+...|+|++|++...+||+++|+++-++.. .+|++++|+..+++++.--+.... ...+-.+-.++..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 45666888999999999999999999999887775 799999999999998652222111 1112234468888
Q ss_pred HHhCCCCHHHHHHHHHhhchh
Q 026999 99 YLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 99 ~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+...+ ++++|++.|.+.+..
T Consensus 89 ~~~~~-~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 89 YFKEE-KYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHhC-CHHHHHHHHHHHHhc
Confidence 88987 999999999998865
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.09 E-value=3.1e-06 Score=71.53 Aligned_cols=112 Identities=9% Similarity=-0.047 Sum_probs=83.6
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEE 75 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~ 75 (229)
|+.++++...++++...|.++.+...++-.|...|++++|++..+++++++|++.-+... ..++.+++......
T Consensus 10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~ 89 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT 89 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhh
Confidence 899999999999999999999999999999999999999999999999999999987766 23333333222111
Q ss_pred chhhccCCCCcchhh-hHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H-~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.. -. .+| ..+ .+-..+..++..| ++++|.+.+++....
T Consensus 90 ~~--~~-~~p--~~~~~~l~~a~~~~~~g-d~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 90 AK--VL-GEN--EELTKSLVSFNLSMVSQ-DYEQVSELALQIEEL 128 (264)
T ss_dssp EE--CC-CSC--HHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred hh--cc-cCc--hHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhc
Confidence 11 11 111 122 2224566677776 999999999876655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.01 E-value=2.8e-06 Score=64.91 Aligned_cols=77 Identities=16% Similarity=0.019 Sum_probs=65.5
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHh----------CCHHHHHHHHHHHHhhCCCChhhHHH------hh--
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL----------GQMSDAEEAAKKGLKINKHDCWSQHA------HD-- 63 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~----------g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~-- 63 (229)
|.+++++...++++..+|.++.++..+|.++.+. +.+++|++..++||++||+++-++.. .+
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~ 90 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 90 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence 5678899999999999999999999999988754 45688999999999999999988877 23
Q ss_pred ---------CCHHHHHHHHHHchh
Q 026999 64 ---------CCFKEAVQFMEECSS 78 (229)
Q Consensus 64 ---------Gr~~egi~~le~~~~ 78 (229)
+.+++|+.+++++..
T Consensus 91 ~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 91 LTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHhHHHhhhhhhcccc
Confidence 346888888888887
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=6.8e-06 Score=61.02 Aligned_cols=78 Identities=12% Similarity=0.162 Sum_probs=70.1
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------------hhCCHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------------HDCCFK 67 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------------~~Gr~~ 67 (229)
.|+++.++..-.+++..+|.++.++..+|-++..+|+|++|+..+++||+++|+++-+... ..++++
T Consensus 17 ~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~ 96 (128)
T d1elra_ 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (128)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 4889999999999999999999999999999999999999999999999999998754332 578999
Q ss_pred HHHHHHHHchh
Q 026999 68 EAVQFMEECSS 78 (229)
Q Consensus 68 egi~~le~~~~ 78 (229)
+|+.+.+++..
T Consensus 97 ~A~~~~~kal~ 107 (128)
T d1elra_ 97 DAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999888875
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.93 E-value=4.1e-05 Score=60.53 Aligned_cols=89 Identities=9% Similarity=0.043 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh--------hhHHH--------------------hhCCHHHHHHHHHH
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDC--------WSQHA--------------------HDCCFKEAVQFMEE 75 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da--------wA~Ha--------------------~~Gr~~egi~~le~ 75 (229)
.+.-.|..+...|++++|....++||+|.|.+. |+... ..|++++++..+++
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~ 92 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 92 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 555677788999999999999999999998765 33222 69999999999999
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
... .+|+ .-..|.++...+...| ++++|++.|++...
T Consensus 93 al~----~~P~-~e~~~~~l~~al~~~G-r~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 93 LTF----EHPY-REPLWTQLITAYYLSD-RQSDALGAYRRVKT 129 (179)
T ss_dssp HHH----HSTT-CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred HHH----hCCc-cHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 998 5665 4578889999999987 99999999987643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=1.4e-05 Score=56.54 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=52.1
Q ss_pred CCChhHHHHHHHhhCCCCC-------CchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 1 MGRPDLCFDIIHQVLPYNQ-------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~-------~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
.||..++....++++...| ..+.++..+|+++...|+|++|.+..++||+++|+++-+...
T Consensus 18 ~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 4888889888888876432 345789999999999999999999999999999999977665
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=0.0017 Score=51.59 Aligned_cols=98 Identities=9% Similarity=0.025 Sum_probs=75.1
Q ss_pred chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHH-----H------hhCCHHHHHHHHHHchhhccCCCCc-ch
Q 026999 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH-----A------HDCCFKEAVQFMEECSSTWSSCSSF-MY 88 (229)
Q Consensus 21 ~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~H-----a------~~Gr~~egi~~le~~~~~w~~~~~~-~~ 88 (229)
.+.++.+.|-++...|++++|++.+++||+++|++..... . .+|++++|+..++++.......++. ..
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 4567778888999999999999999999999999854222 1 7999999999999997654443321 12
Q ss_pred hhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 89 THNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 89 ~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
....-.++..+...| ++++++..|.+.+.-
T Consensus 91 ~~~~~~~~~~~~~~~-~~~~a~~~~~~al~~ 120 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQG-FLQTAWETQEKAFQL 120 (366)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 223334777888886 999999999887654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=6.1e-05 Score=67.82 Aligned_cols=187 Identities=10% Similarity=-0.029 Sum_probs=91.8
Q ss_pred hHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH----hhCCHHHHHHHHHHchhhc
Q 026999 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----HDCCFKEAVQFMEECSSTW 80 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----~~Gr~~egi~~le~~~~~w 80 (229)
..++....+++..+|.+...+..+|..+...|++++|....++++.++|..++..=. ++|++++|+.+.+++..-+
T Consensus 103 ~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~ 182 (497)
T d1ya0a1 103 TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182 (497)
T ss_dssp HHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 445555556666677777778888888888888888888888888888876544333 8999999999999999965
Q ss_pred cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcccccccHHHHHH
Q 026999 81 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLAD 160 (229)
Q Consensus 81 ~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v~vg~rW~~la~ 160 (229)
+..+ ..+-|+|..+...| ++.+|+..|.+.|.-. . ++.. -.+....++.-...... ...+-..
T Consensus 183 P~~~-----~~~~~Lg~~~~~~~-~~~~A~~~y~ral~~~---~--~~~~-a~~nL~~~~~~~~~~~~--~~~~~~~--- 245 (497)
T d1ya0a1 183 PSNG-----QPYNQLAILASSKG-DHLTTIFYYCRSIAVK---F--PFPA-ASTNLQKALSKALESRD--EVKTKWG--- 245 (497)
T ss_dssp TTBS-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHSSS---B--CCHH-HHHHHHHHHHHHTTSCC--CCCSSCC---
T ss_pred CCch-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhCC---C--CCHH-HHHHHHHHHHHhhhhhh--hhccccc---
Confidence 5522 23347999999987 9999999999998752 1 2232 22333344433332221 1111111
Q ss_pred HHHhhhhccccchhhHHHHHHHhcCCCc---HHHHHHHHHHHHHhhcCchHHHHHHH
Q 026999 161 CVADQANWYLECHLDLLILWALANTGEV---SKAEDLLKGLKSRHSKMIKKKQELMQ 214 (229)
Q Consensus 161 ~~~~~~~~~~~~F~d~H~~~al~~ag~~---~~~~~ll~~~~~~~~~~~~~~~~~~~ 214 (229)
...-...|..+|..+-. +.+-. ...+.++..++......+-...+..+
T Consensus 246 -----~~~~~~~f~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 296 (497)
T d1ya0a1 246 -----VSDFIKAFIKFHGHVYL-SKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVH 296 (497)
T ss_dssp -----HHHHHHHHHHHHHHHHH-TCCGGGHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred -----cchHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 12233468888866543 33321 23456666666666553333334433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.77 E-value=1.4e-05 Score=60.95 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=64.7
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCChhhHHH----------------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHH
Q 026999 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHA----------------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 95 (229)
Q Consensus 32 L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha----------------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHl 95 (229)
++..+.|++|++.+++||+++|+|+-++.. ..+++++++..++++++ .+|-. .-.|+.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~----l~P~~-~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPKK-DEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTTC-HHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH----hcchh-hHHHhhH
Confidence 455678999999999999999999988887 13567899999999987 55532 2345568
Q ss_pred HHHHHhCC----------CCHHHHHHHHHhhchh
Q 026999 96 ALCYLEGH----------SPMRKVLEIYDNHIWK 119 (229)
Q Consensus 96 AL~~l~~g----------g~~d~Al~~yd~~i~~ 119 (229)
|..|.++| +.|++|++.|++.|.-
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 88887764 1368899999888876
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.77 E-value=8.6e-05 Score=56.33 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=66.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCChh------------hHHH------hhCCHHHHHHHHHHchhhccCC---CCc-
Q 026999 29 AFSLLELGQMSDAEEAAKKGLKINKHDCW------------SQHA------HDCCFKEAVQFMEECSSTWSSC---SSF- 86 (229)
Q Consensus 29 AF~L~e~g~~d~Ae~~a~rAL~LnP~daw------------A~Ha------~~Gr~~egi~~le~~~~~w~~~---~~~- 86 (229)
|-.+...|+|++|++..++||+++|+.+- ++.. ..|++++++...+++..-.+.. ++.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44566789999999999999999998752 2222 6999999999999987533221 110
Q ss_pred ch--hhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 87 MY--THNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 87 ~~--~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+ .-.+..+|.+|..+| ++|+|++.|++.+.-
T Consensus 96 ~~~~~~a~~~~g~~~~~lg-~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 01 113446899999997 999999999997765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=2.1e-05 Score=58.56 Aligned_cols=77 Identities=5% Similarity=-0.117 Sum_probs=64.0
Q ss_pred CChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCChh--hHHH------hhCCHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCW--SQHA------HDCCFKEAV 70 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g---~~d~Ae~~a~rAL~LnP~daw--A~Ha------~~Gr~~egi 70 (229)
++..++...-++++...|.++.++..+|.+|...+ ++++|++..+++|+.+|++.. ++.. ..|++++|+
T Consensus 13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~ 92 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHH
Confidence 46678888999999999999999999999998754 556799999999999987643 3323 799999999
Q ss_pred HHHHHchh
Q 026999 71 QFMEECSS 78 (229)
Q Consensus 71 ~~le~~~~ 78 (229)
..++++..
T Consensus 93 ~~~~~aL~ 100 (122)
T d1nzna_ 93 KYVRGLLQ 100 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999988
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.72 E-value=8.2e-06 Score=68.56 Aligned_cols=107 Identities=10% Similarity=0.012 Sum_probs=86.5
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCC--HHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ--MSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFM 73 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~--~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~l 73 (229)
+...++...++++..+|.++.+....+.++...++ +++|.....++++++|++..+... ..|+.++++.++
T Consensus 88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~ 167 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHH
Confidence 45678889999999999999999999998888775 889999999999999999887543 589999999999
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHh
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 115 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~ 115 (229)
+.++. .+|. ..-.|-.++..+..+| ++++|+..+..
T Consensus 168 ~~~i~----~~p~-~~~a~~~l~~~~~~~~-~~~~A~~~~~~ 203 (334)
T d1dcea1 168 DSLIT----RNFS-NYSSWHYRSCLLPQLH-PQPDSGPQGRL 203 (334)
T ss_dssp HTTTT----TTCC-CHHHHHHHHHHHHHHS-CCCCSSSCCSS
T ss_pred HHHHH----cCCC-CHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 99988 4443 2234446888888886 88877655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=3e-05 Score=60.09 Aligned_cols=55 Identities=20% Similarity=0.112 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 24 ~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
++..+|.++...|+|++|+..+++||+++|+++-++-. ..|++++|+..++++..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45668889999999999999999999999999877766 79999999999999987
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=0.00018 Score=56.63 Aligned_cols=82 Identities=9% Similarity=-0.039 Sum_probs=72.4
Q ss_pred CCChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh----------------HHH---
Q 026999 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS----------------QHA--- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA----------------~Ha--- 61 (229)
+|+.+.+.+...+++..+|.++.++..+|.++.+.|+|++|.+..++||+..|.+... ++.
T Consensus 49 ~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~ 128 (192)
T d1hh8a_ 49 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 128 (192)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999988876542 111
Q ss_pred ---hhCCHHHHHHHHHHchhhccC
Q 026999 62 ---HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 62 ---~~Gr~~egi~~le~~~~~w~~ 82 (229)
..|++++++..++.+...+..
T Consensus 129 ~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 129 MYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC
Confidence 799999999999999884444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.69 E-value=0.00039 Score=57.88 Aligned_cols=110 Identities=11% Similarity=0.070 Sum_probs=85.0
Q ss_pred hhHHHHHHHhhCCCCCCchhHHHHHHHHH----------HHhCCHHHHHHHHHHHHhhCCCChhhHHH--------hhCC
Q 026999 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSL----------LELGQMSDAEEAAKKGLKINKHDCWSQHA--------HDCC 65 (229)
Q Consensus 4 ~~~~~~~~~ralp~~~~~~~~~g~~AF~L----------~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha--------~~Gr 65 (229)
.+.+++..++++..+|+++-+..+.+-.+ ...|++++|....+++++.+|+++-+... -+++
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~ 124 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence 46899999999999999886655544443 34556899999999999999999876554 3556
Q ss_pred HHHHHHHHHHchhhccCCCCcchhhhHHH-HHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 66 FKEAVQFMEECSSTWSSCSSFMYTHNWWH-VALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 66 ~~egi~~le~~~~~w~~~~~~~~~H~~WH-lAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.++++..++++.. .+|. ..+.|++ .+..+...+ .+++|+..|+..|..
T Consensus 125 ~~~a~~~~~~al~----~~~~-~~~~~~~~~~~~~~~~~-~~~~Al~~~~~~i~~ 173 (334)
T d1dcea1 125 WARELELCARFLE----ADER-NFHCWDYRRFVAAQAAV-APAEELAFTDSLITR 173 (334)
T ss_dssp HHHHHHHHHHHHH----HCTT-CHHHHHHHHHHHHHTCC-CHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHh----hCch-hhhhhhhHHHHHHHhcc-ccHHHHHHHHHHHHc
Confidence 8999999999988 3332 2456665 456766665 999999999998876
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.69 E-value=4.7e-05 Score=58.42 Aligned_cols=63 Identities=8% Similarity=0.016 Sum_probs=54.7
Q ss_pred CCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 16 p~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
...|....++..+|.++.+.|+|++|+..+.+||+++|+++-++.. ..|++++|+..++++..
T Consensus 71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456667778888999999999999999999999999999888777 68999999999999987
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=7.5e-05 Score=57.77 Aligned_cols=79 Identities=11% Similarity=-0.029 Sum_probs=63.0
Q ss_pred hCCHHHHHHHHHHHHhhCCCChhhH--------------HH-------hhCCHHHHHHHHHHchhhccCCCCcchhhhHH
Q 026999 35 LGQMSDAEEAAKKGLKINKHDCWSQ--------------HA-------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW 93 (229)
Q Consensus 35 ~g~~d~Ae~~a~rAL~LnP~dawA~--------------Ha-------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~W 93 (229)
.|+|++|+...++||.+.|.+.-.. +. .+|++++|+..+++++. .+|- ....+.
T Consensus 26 ~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~----~~p~-~~~a~~ 100 (170)
T d1p5qa1 26 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE----LDSN-NEKGLS 100 (170)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT-CHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh----cccc-chhhhH
Confidence 0588999999999999988764311 11 69999999999999998 4443 234556
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 94 HVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 94 HlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|.++..+| +|++|+..|...+.-
T Consensus 101 ~~g~~~~~~g-~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 101 RRGEAHLAVN-DFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHHHh
Confidence 7999999997 999999999999987
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.66 E-value=4.1e-05 Score=58.33 Aligned_cols=56 Identities=21% Similarity=0.032 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
..+..+|.++...|+|++|.+.+.+||+++|+++-++.. ..|++++|+..++++..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678888888888888888888888888888877776 68888888888888877
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=4.8e-05 Score=58.59 Aligned_cols=56 Identities=21% Similarity=0.140 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
-++..+|.++...|+|++|+..+.++|.++|+++.++.. ..|++++++..++++..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456678999999999999999999999999999999988 79999999999999987
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=0.0001 Score=61.03 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=89.6
Q ss_pred CCChhHHHHHHHhhCCCC------CCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------------h
Q 026999 1 MGRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------H 62 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~------~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------------~ 62 (229)
.|+.+.+...-.+++... ++....+...|.++...|++++|.+..++++++.++...-.-+ .
T Consensus 50 ~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 129 (290)
T d1qqea_ 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129 (290)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh
Confidence 367788888888887742 2234577778899999999999999999999998877432222 2
Q ss_pred -hCCHHHHHHHHHHchhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026999 63 -DCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 120 (229)
Q Consensus 63 -~Gr~~egi~~le~~~~~w~~~~~-~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~~ 120 (229)
.|++++|+.+.+++..-....+. ....-.+=.+|.++..+| +|++|+.+|++.+...
T Consensus 130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g-~y~~A~~~~~~~~~~~ 188 (290)
T d1qqea_ 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSS 188 (290)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC-hHHHHHHHHHHHHHhC
Confidence 59999999999999754443332 222334556899999997 9999999999877663
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.58 E-value=0.00015 Score=55.00 Aligned_cols=79 Identities=9% Similarity=-0.014 Sum_probs=56.3
Q ss_pred hCCHHHHHHHHHHHHhhCCCChh---------------hHHH-------hhCCHHHHHHHHHHchhhccCCCCcchhhhH
Q 026999 35 LGQMSDAEEAAKKGLKINKHDCW---------------SQHA-------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 92 (229)
Q Consensus 35 ~g~~d~Ae~~a~rAL~LnP~daw---------------A~Ha-------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~ 92 (229)
.|+|.+|+....+||.+-|...- +.+. ..|++++++...++++...+. . .=.|
T Consensus 30 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~---~--~ka~ 104 (153)
T d2fbna1 30 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN---N--VKAL 104 (153)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C--HHHH
T ss_pred cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch---h--hhhh
Confidence 04667777777777766554331 1111 589999999999999883332 1 2356
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 93 WHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 93 WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.+|.+|..+| ++++|+..|.+.+.-
T Consensus 105 ~~~g~~~~~lg-~~~~A~~~~~~al~l 130 (153)
T d2fbna1 105 YKLGVANMYFG-FLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 68999999997 999999999999887
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=0.00015 Score=55.51 Aligned_cols=65 Identities=11% Similarity=-0.072 Sum_probs=48.7
Q ss_pred HhhCCCChhhHHH------hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 49 LKINKHDCWSQHA------HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 49 L~LnP~dawA~Ha------~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..++|.++-.+.. ..|++++|+...++++. .+|- ....|..+|.+|+.+| ++++|+..|.+.+.-
T Consensus 70 ~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~p~-~~~a~~~~g~~~~~l~-~~~~A~~~~~~al~l 140 (169)
T d1ihga1 70 AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPS-NTKALYRRAQGWQGLK-EYDQALADLKKAQEI 140 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh----hhhh-hhhHHHhHHHHHHHcc-CHHHHHHHHHHHHHh
Confidence 3456666655554 58899999999999887 3443 2346678899988886 899999999888887
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.57 E-value=0.00036 Score=57.95 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=71.1
Q ss_pred hhHHHHHHHhhCCC-CCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh---hhHHH----hhCCHHHHHHHHHH
Q 026999 4 PDLCFDIIHQVLPY-NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHA----HDCCFKEAVQFMEE 75 (229)
Q Consensus 4 ~~~~~~~~~ralp~-~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~da---wA~Ha----~~Gr~~egi~~le~ 75 (229)
.+.++...+|++.. .|.+..+...++-.++..|.+++|+...+++|+.+|.+. |.... ..|..+++++.+++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45667777777763 456666666777777777888888888888888888763 33332 46777778777777
Q ss_pred chhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 76 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 76 ~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
+.. ..|. ..+.|.-.|.......|+.+.|..+|++.+..
T Consensus 160 al~----~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~ 198 (308)
T d2onda1 160 ARE----DART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 198 (308)
T ss_dssp HHT----STTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHH----hCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 766 2322 22444444544333223777777777777765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.51 E-value=0.0056 Score=50.34 Aligned_cols=111 Identities=5% Similarity=-0.072 Sum_probs=49.7
Q ss_pred CChhHHHHHHHhhCCCCCCchh-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-------hhCCHHHHHHHH
Q 026999 2 GRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-------HDCCFKEAVQFM 73 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~~~~-~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-------~~Gr~~egi~~l 73 (229)
|+.+.++....+++...|.+.. +.-.++-.+...|.+++|++..++|+...|.+....-. ..|+.+.+...+
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~ 192 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4444555555555554443321 22222333334445555555555555555554422222 134455555555
Q ss_pred HHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026999 74 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 118 (229)
Q Consensus 74 e~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~ 118 (229)
++.....+. ...+|-..+.++...| ++++|..+|++.|.
T Consensus 193 e~~l~~~p~-----~~~~w~~y~~~~~~~g-~~~~aR~~fe~ai~ 231 (308)
T d2onda1 193 ELGLKKYGD-----IPEYVLAYIDYLSHLN-EDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHTT-----CHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHhhhh-----hHHHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 555442111 1234444555544443 55555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.44 E-value=0.00017 Score=55.41 Aligned_cols=52 Identities=8% Similarity=0.007 Sum_probs=40.5
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
..|++++|+.++++++.- +|- ..-.+...|.+|+.+| +|++|+..|.+.+.-
T Consensus 76 ~l~~~~~Ai~~~~~al~l----~p~-~~~a~~~~~~~~~~l~-~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGL----DSA-NEKGLYRRGEAQLLMN-EFESAKGDFEKVLEV 127 (168)
T ss_dssp HTTCHHHHHHHHHHHHHH----CTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHS
T ss_pred Hhhhcccchhhhhhhhhc----ccc-hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 689999999999999873 332 1234456888888987 899999999998886
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=0.00037 Score=54.79 Aligned_cols=78 Identities=9% Similarity=-0.123 Sum_probs=67.0
Q ss_pred CCChhHHHHHHHhhCCCCCCch----------------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhh
Q 026999 1 MGRPDLCFDIIHQVLPYNQQED----------------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS 58 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~~----------------------~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA 58 (229)
.|+.+.+.+...+++..|+++. .++..++-.+.+.|++++|.+.++++|+++|.|..+
T Consensus 24 ~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~ 103 (179)
T d2ff4a2 24 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPL 103 (179)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHH
Confidence 3889999999999999877432 245667778999999999999999999999999987
Q ss_pred HHH------hhCCHHHHHHHHHHchh
Q 026999 59 QHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 59 ~Ha------~~Gr~~egi~~le~~~~ 78 (229)
+-. ..|+.+++++..+++.+
T Consensus 104 ~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 104 WTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 776 69999999999888865
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.21 E-value=0.001 Score=54.63 Aligned_cols=117 Identities=11% Similarity=0.000 Sum_probs=85.4
Q ss_pred CCChhHHHHHHHhhCCCCCCc------hhHHHHHHHHHHH-hCCHHHHHHHHHHHHhhCCCChhhH---HH---------
Q 026999 1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLE-LGQMSDAEEAAKKGLKINKHDCWSQ---HA--------- 61 (229)
Q Consensus 1 ~G~~~~~~~~~~ralp~~~~~------~~~~g~~AF~L~e-~g~~d~Ae~~a~rAL~LnP~dawA~---Ha--------- 61 (229)
+|+.+.+.....+++...+.. ...+..+|-++.. .|++++|++..++|+++.+.+..-. -+
T Consensus 90 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~ 169 (290)
T d1qqea_ 90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Confidence 588889999988888764322 3455555555644 5999999999999999976553211 11
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchh---hhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYT---HNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~---H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
.+|++++|+...++........+ .... ..+-..+++++..| +++.|...+++.+.-
T Consensus 170 ~~g~y~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 170 LDGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAAT-DAVAAARTLQEGQSE 228 (290)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCT-TTGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHGGGCC
T ss_pred HcChHHHHHHHHHHHHHhCccch-hhhhhHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 79999999999999887655532 2221 24456888999987 999999999887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.94 E-value=0.0011 Score=49.83 Aligned_cols=81 Identities=16% Similarity=0.036 Sum_probs=63.6
Q ss_pred CChhHHHHHHHhhCCCCCC------------chhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-------hhhH---
Q 026999 2 GRPDLCFDIIHQVLPYNQQ------------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-------CWSQ--- 59 (229)
Q Consensus 2 G~~~~~~~~~~ralp~~~~------------~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~d-------awA~--- 59 (229)
|+++.++...++++...|. .+..+..+|.++...|+|++|.+...+||++.|+. +...
T Consensus 23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a 102 (156)
T d2hr2a1 23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA 102 (156)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHH
Confidence 7889999999999865432 23578899999999999999999999999886642 2222
Q ss_pred HH-------hhCCHHHHHHHHHHchhhccC
Q 026999 60 HA-------HDCCFKEAVQFMEECSSTWSS 82 (229)
Q Consensus 60 Ha-------~~Gr~~egi~~le~~~~~w~~ 82 (229)
+. ..|++++|+..++++.+-.+.
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 11 799999999999999875444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.0027 Score=44.07 Aligned_cols=66 Identities=9% Similarity=-0.080 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHHhhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCH
Q 026999 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 106 (229)
Q Consensus 27 ~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~ 106 (229)
.+|-++-+.|+|++|+...++||++.|++.... .-..-.+.++|.++...| ++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--------------------------~~~~~~l~~Lg~~~~~~g-~~ 62 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------------------------IDKVSVLDYLSYAVYQQG-DL 62 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------------------------SCHHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--------------------------ccHHHHHHHHhhHHHhcC-Ch
Confidence 455556778888888888888888777764221 011233456999999997 99
Q ss_pred HHHHHHHHhhchh
Q 026999 107 RKVLEIYDNHIWK 119 (229)
Q Consensus 107 d~Al~~yd~~i~~ 119 (229)
++|++.|++.|.-
T Consensus 63 ~~A~~~y~~aL~l 75 (95)
T d1tjca_ 63 DKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.22 E-value=0.0027 Score=52.82 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=42.4
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 33 LELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 33 ~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
...|++++|++..+++|+.+|+|+.+... .+|++++|+..++.+..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999988888 79999999999999987
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.19 E-value=0.0037 Score=46.89 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=41.9
Q ss_pred hHHHHHHHhhCCCCCCch-hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH
Q 026999 5 DLCFDIIHQVLPYNQQED-FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (229)
Q Consensus 5 ~~~~~~~~ralp~~~~~~-~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha 61 (229)
..+....+.++...|.+. -.+..+|+++-..|+|++|.+..+++|+++|++.-|.+-
T Consensus 55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 344555555555556554 577788888888888888888888889988888877654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.011 Score=52.56 Aligned_cols=56 Identities=9% Similarity=-0.061 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH------hhCCHHHHHHHHHHchh
Q 026999 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------HDCCFKEAVQFMEECSS 78 (229)
Q Consensus 23 ~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha------~~Gr~~egi~~le~~~~ 78 (229)
..+..+|-.+...|+|++|+...++|++++|+++.++|. .+|+..+|+.+..++..
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567788999999999999999999999999999999998 69999999999999986
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.96 E-value=0.031 Score=41.60 Aligned_cols=53 Identities=4% Similarity=-0.110 Sum_probs=42.2
Q ss_pred hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026999 62 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 62 ~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~~gg~~d~Al~~yd~~i~~ 119 (229)
...+.++||..+++..+ .+|-.+.=.+.++|+.|+.+| +|++|++.+++.+..
T Consensus 50 ~~~d~~~gI~lLe~~~~----~~p~~~rd~lY~Lav~yyklg-dy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 50 DVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEH 102 (124)
T ss_dssp CHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcc
Confidence 56678899999999876 344323345678999999997 999999999998877
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.82 E-value=0.63 Score=32.99 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhhCCCChhhHHH----hhCCHHHHHHHHHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHH
Q 026999 37 QMSDAEEAAKKGLKINKHDCWSQHA----HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRK 108 (229)
Q Consensus 37 ~~d~Ae~~a~rAL~LnP~dawA~Ha----~~Gr~~egi~~le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~ 108 (229)
++++|.+..++|.+.+ ++-+... ...+.++++.+++++.+ .+.- ... -.+|.+|+. .. ++++
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~~~~~~~~~a~~~~~~aa~----~g~~-~a~--~~Lg~~y~~g~~~~~-d~~~ 77 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVSNSQINKQKLFQYLSKACE----LNSG-NGC--RFLGDFYENGKYVKK-DLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHTCTTSCHHHHHHHHHHHHH----TTCH-HHH--HHHHHHHHHCSSSCC-CHHH
T ss_pred CHHHHHHHHHHHHHCC--ChhhhhhhccccccCHHHHHHHHhhhhc----ccch-hhh--hhHHHhhhhccccch-hhHH
Confidence 6788889999988775 5555555 67788899999988876 2322 222 247887775 23 6889
Q ss_pred HHHHHHhhchhhccCCCCCchhhhhhHHHHHHHHhhcCCcc
Q 026999 109 VLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELD 149 (229)
Q Consensus 109 Al~~yd~~i~~~~~~~~~~~~~~~~Da~sLLwRL~l~G~~v 149 (229)
|+++|.+..... ..+|...|=.+...|..|
T Consensus 78 A~~~~~~aa~~g-----------~~~a~~~Lg~~y~~G~gv 107 (133)
T d1klxa_ 78 AAQYYSKACGLN-----------DQDGCLILGYKQYAGKGV 107 (133)
T ss_dssp HHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSS
T ss_pred HHHHHhhhhccC-----------cchHHHHHHHHHHcCCcc
Confidence 999998766542 124555555566666643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.80 E-value=0.29 Score=34.91 Aligned_cols=103 Identities=7% Similarity=-0.061 Sum_probs=71.2
Q ss_pred ChhHHHHHHHhhCCCCCCchhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----h-----hCCHHHHHHH
Q 026999 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----H-----DCCFKEAVQF 72 (229)
Q Consensus 3 ~~~~~~~~~~ralp~~~~~~~~~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~-----~Gr~~egi~~ 72 (229)
|.+++....+++.... ++.+...+ +.....++++|.+..++|.+. +++.+... + .-+.++|+.|
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l--~~~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSL--VSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHH--HTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhh--ccccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence 4567777788877653 33333333 334566899999999999875 56666555 3 3458999999
Q ss_pred HHHchhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026999 73 MEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 119 (229)
Q Consensus 73 le~~~~~w~~~~~~~~~H~~WHlAL~~l~----~gg~~d~Al~~yd~~i~~ 119 (229)
++++.. .++- ...+ .++.+|+. .. ++++|+++|.+....
T Consensus 82 ~~~aa~----~g~~-~a~~--~Lg~~y~~G~gv~~-d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 82 YSKACG----LNDQ-DGCL--ILGYKQYAGKGVVK-NEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHH----TTCH-HHHH--HHHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred Hhhhhc----cCcc-hHHH--HHHHHHHcCCccCC-CHHHHHHHHHHHHHC
Confidence 999987 3422 2222 48998887 23 799999999887655
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=81.38 E-value=9 Score=28.83 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChhhHHH-----h-----hCCHHHHHHHHHHchh
Q 026999 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-----H-----DCCFKEAVQFMEECSS 78 (229)
Q Consensus 25 ~g~~AF~L~e~g~~d~Ae~~a~rAL~LnP~dawA~Ha-----~-----~Gr~~egi~~le~~~~ 78 (229)
+.-+|-.+.+.|+|++|++..++|.+++ |+-|... . ..+...++.+++....
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 3333444445556666666666654432 3333333 1 2345555555555544
|