Citrus Sinensis ID: 027001

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCLVVYELNFHNYVFFFLGSFHIIFDSVKYCFADQQGIYEWLLESIMDTRRVVSTSRGWELLRDSD
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHccEEEEEEcccHHHHHcccccEEEcEEEcccccccccEEEEEEccccccccEEcccEEEEEcccHHHccccHHHHHHHHHHHHccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHcHHHHHHHHHHHccHHHHHHHHHccEEEEEEccHHHHHHcccccEEEEEEEcccHHHHHHEEEEEHHHHHHHHHHHHccHEEEEccHHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHcccc
Coil and Loop (DISEMBL)
MERLKDCMEELLKFTLSShidetldfdlgISSKFCTnllqddpndavspstsfdfdsdedslqgvplypLYKRLALALCRsvncgafcRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLEtvegrctisdynrcgLCLVVYELNFHNYVFFFLGSFHIIFDSVKYCFADQQGIYEWLLESIMDTRRVVSTSRGWELLRDSD
Flexible Loop (DISEMBL)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCLVVYELNFHNYVFFFLGSFHIIFDSVKYCFADQQGIYEWLLesimdtrrvvstsrgwellrdsd
Low Complexity Region (SEG)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVspstsfdfdsdedsLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCLVVYELNFHNYVFFFLGSFHIIFDSVKYCFADQQGIYEWLLESIMDTRRVVSTSRGWELLRDSD
Disordered region (IsUnstruct)
*******MEELLKFTLSSHIDETLDFDLGISSKFCTNLL**********************LQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCLVVYELNFHNYVFFFLGSFHIIFDSVKYCFADQQGIYEWLLESIMDTRRVVSTSRGWE******
Disordered Region (DISOPRED)
*****DC*EELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSF********LQGVPLYPLYKRLALALCRSVNCGAFCRTY*********************LILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCLVVYELNFHNYVFFFLGSFHIIFDSVKYCFADQQGIYEWLLESIMDTRRVVSTSRGWELLR***
Disordered Region (DISEMBL)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCLVVYELNFHNYVFFFLGSFHIIFDSVKYCFADQQGIYEWLLESIMDTRRVVSTSRGWELLRDSD
Disordered Region (DISPRO)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCLVVYELNFHNYVFFFLGSFHIIFDSVKYCFADQQGIYEWLLESIMDTRRVVSTSRGWELLR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCLVVYELNFHNYVFFFLGSFHIIFDSVKYCFADQQGIYEWLLESIMDTRRVVSTSRGWELLRDSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
224093009	380	predicted protein [Populus trichocarpa]	0.689	0.415	0.540	3e-42
255586386	370	conserved hypothetical protein [Ricinus	0.681	0.421	0.509	2e-40
359495929	398	PREDICTED: uncharacterized protein LOC10	0.655	0.376	0.527	3e-38
224155241	141	predicted protein [Populus trichocarpa]	0.615	1.0	0.534	1e-34
363808278	400	uncharacterized protein LOC100807259 [Gl	0.655	0.375	0.472	4e-32
238479547	388	RNA-binding ASCH domain protein [Arabido	0.733	0.432	0.408	5e-29
449470818	139	PREDICTED: uncharacterized protein LOC10	0.576	0.949	0.464	4e-26
147846119	796	hypothetical protein VITISV_022668 [Viti	0.515	0.148	0.5	2e-23
449516559	127	PREDICTED: uncharacterized LOC101215607	0.519	0.937	0.457	1e-20
449454590	116	PREDICTED: uncharacterized protein LOC10	0.471	0.931	0.487	1e-20

>gi|224093009|ref|XP_002309781.1| predicted protein [Populus trichocarpa] gi|222852684|gb|EEE90231.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 117/161 (72%), Gaps = 3/161 (1%)

Query: 1   MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDED 60
           ME+ ++ +EELLKFTL SHI++TL+F+LG+S  FC NLL++DPND +  ST     +  D
Sbjct: 1   MEKQRERIEELLKFTLESHINQTLEFNLGLSKDFCINLLEEDPNDMLCHSTPTP--TPTD 58

Query: 61  SLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSS 120
           S  GV LYPLYKRLA AL RSV  GA CRTY+K+   +++  L+QKEE W QLI  KG  
Sbjct: 59  SFDGVALYPLYKRLASALYRSVKSGAVCRTYEKMVFGDKDSNLKQKEENWDQLIKEKG-L 117

Query: 121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNR 161
           +L+++L+ +  E+HVQEP+FS +KDG +T+EGRC   DY R
Sbjct: 118 ELINVLEGISCEIHVQEPYFSLLKDGRKTIEGRCATGDYIR 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586386|ref|XP_002533840.1| conserved hypothetical protein [Ricinus communis] gi|223526219|gb|EEF28542.1| conserved hypothetical protein [Ricinus communis]

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 120/161 (74%), Gaps = 5/161 (3%)

Query: 1   MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDED 60
           ME+L++ +EE++K+TL+SHI++TL FDL +S +FC+NLL+ DPND VS       +S   
Sbjct: 1   MEQLRNRIEEIVKYTLNSHINQTLGFDLSLSKEFCSNLLRADPNDTVS----LPPNSTSG 56

Query: 61  SLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSS 120
           S +GVP YPL++RL  AL + +   +FC+TY  +  +NE+  L+QKEE+W++LIL KG S
Sbjct: 57  SFEGVPEYPLFRRLGSALYQCIISRSFCKTYDTIEFINEDNSLKQKEEQWNKLILEKG-S 115

Query: 121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNR 161
           +L+++L A   ELHVQEPFFS +KDGL+T+EGRC   +Y+R
Sbjct: 116 ELMNVLMATFHELHVQEPFFSLLKDGLKTIEGRCADDNYSR 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495929|ref|XP_002272151.2| PREDICTED: uncharacterized protein LOC100242314 [Vitis vinifera] gi|296081341|emb|CBI17687.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/161 (52%), Positives = 117/161 (72%), Gaps = 11/161 (6%)

Query: 4   LKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDP-NDAVSPSTSFDFDSDEDSL 62
           L +C+EEL+K+TL S ++ TL+ DLG+S  +C+ LL+DD   D  S ST        DS 
Sbjct: 19  LANCVEELVKYTLYSSVNGTLEIDLGLSKDYCSALLKDDHLTDPTSIST--------DSF 70

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDL 122
           +GVP YPLYKRL+ AL RS+  GAF   Y  +AL++E+  L+QKEE W++L+++KG  +L
Sbjct: 71  EGVPPYPLYKRLSAALYRSIISGAFWEIYSTMALIHEDSSLKQKEE-WNKLVVDKGL-EL 128

Query: 123 VDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCG 163
           V+ILK ++FELHVQEPFFS +KDGL+ +EGRC + DYNR G
Sbjct: 129 VNILKTIDFELHVQEPFFSQLKDGLKIIEGRCAVGDYNRIG 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224155241|ref|XP_002337582.1| predicted protein [Populus trichocarpa] gi|222839619|gb|EEE77942.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/144 (53%), Positives = 105/144 (72%), Gaps = 3/144 (2%)

Query: 1   MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDED 60
           ME+ ++ +EELLKFTL SHI++TL+F+LG+S  FC NLL++DPND +  ST     +  D
Sbjct: 1   MEKQRERIEELLKFTLESHINQTLEFNLGLSKDFCINLLEEDPNDMLCHSTPTP--TPTD 58

Query: 61  SLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSS 120
           S  GV LYPLYKRLA AL RSV  GA CRTY+K+   +++  L+QKEE W QLI  KG  
Sbjct: 59  SFDGVALYPLYKRLASALYRSVKSGAVCRTYEKMVFGDKDSNLKQKEENWDQLIKEKG-L 117

Query: 121 DLVDILKAVEFELHVQEPFFSFIK 144
           +L+++L+ +  E+HVQEP+FS +K
Sbjct: 118 ELINVLEGISCEIHVQEPYFSLLK 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808278|ref|NP_001242240.1| uncharacterized protein LOC100807259 [Glycine max] gi|255644803|gb|ACU22903.1| unknown [Glycine max]

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 108/161 (67%), Gaps = 11/161 (6%)

Query: 3   RLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSL 62
           +L DC+EEL++FTL+S+        L +SS+F +NLL+DD   A  PS+S      +DSL
Sbjct: 20  KLCDCLEELVRFTLNSN-----SHHLNLSSQFFSNLLKDD---ATHPSSSHSLSQPDDSL 71

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNE--ECFLEQKEEEWSQLILNKGSS 120
           +GVP YPLYKR + AL + ++   FCRT   +A+ +E  +  ++QK  EW +LI+ KG  
Sbjct: 72  EGVPPYPLYKRFSSALLKCMDSETFCRTGANLAMTDEFEDSSMQQKRNEWHRLIVEKGF- 130

Query: 121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNR 161
           ++ +ILK+V FE HVQEPFFS + DGL+T+EGRC    YNR
Sbjct: 131 EIENILKSVSFEFHVQEPFFSQLNDGLKTIEGRCATGKYNR 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479547|ref|NP_001154572.1| RNA-binding ASCH domain protein [Arabidopsis thaliana] gi|330255179|gb|AEC10273.1| RNA-binding ASCH domain protein [Arabidopsis thaliana]

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 117/196 (59%), Gaps = 28/196 (14%)

Query: 1   MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDED 60
           M +++DC++E++KFTL    D  ++FD+G++ +FC+ LL  +       S   D +  E 
Sbjct: 1   MIKIRDCLDEMVKFTL----DYCVEFDIGLTGEFCSGLLCGE-------SVLHDGERIES 49

Query: 61  S-------LQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQL 113
           S         GVP YPLYK LAL L +S++ G+FC T++K++L  E   L++KE+EWS+L
Sbjct: 50  SSYALLHRFSGVPDYPLYKVLALGLLKSIDSGSFCGTFEKISLGKEVIRLKEKEDEWSKL 109

Query: 114 ILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNR---------CGL 164
           I  KG S+LV+ LK V  EL VQEP FS +KDG++TVE RC   +Y+R            
Sbjct: 110 INQKG-SELVNALKDVFSELQVQEPLFSLMKDGIKTVEARCFEEEYDRIRRGGSMVMINK 168

Query: 165 CLVVYELNFHNYVFFF 180
           CL+   L  H Y  F+
Sbjct: 169 CLMFEVLELHQYASFY 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470818|ref|XP_004153113.1| PREDICTED: uncharacterized protein LOC101215405 [Cucumis sativus]

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 95/142 (66%), Gaps = 10/142 (7%)

Query: 3   RLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSL 62
           +L+DC++ELLKF L S  + T DFDLG+SS FC++L + DP    S S    +     S 
Sbjct: 4   KLEDCVQELLKFVLQSSTNGTPDFDLGLSSAFCSSLFKHDP----STSNPLPY-----SK 54

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDL 122
            GVP YPLY+RL+LAL  S+  G FC  Y+K+ + N E  L+QKEE W +LI++KG S++
Sbjct: 55  AGVPPYPLYERLSLALWESLCSGTFCPMYEKMLMKNGESSLKQKEEMWLKLIMDKG-SEM 113

Query: 123 VDILKAVEFELHVQEPFFSFIK 144
           V +L+ +  EL++ EPFF+ +K
Sbjct: 114 VQMLRTLNLELYIDEPFFTQLK 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846119|emb|CAN83746.1| hypothetical protein VITISV_022668 [Vitis vinifera]

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 82/120 (68%), Gaps = 2/120 (1%)

Query: 60  DSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGS 119
           DS +GVP YPLYKRL+ AL RS+  GAF   Y  +AL++E+  L+QK EEW++L+++KG 
Sbjct: 18  DSFEGVPPYPLYKRLSAALYRSIISGAFWEIYSTMALIHEDSSLKQK-EEWNKLVVDKG- 75

Query: 120 SDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCLVVYELNFHNYVFF 179
            +LV+ILK ++FELHVQEPFFS +KDGL+ +EGR           CLV+   +   Y  F
Sbjct: 76  LELVNILKTIDFELHVQEPFFSQLKDGLKIIEGRIGSGALILFNKCLVLEVQDVRRYASF 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516559|ref|XP_004165314.1| PREDICTED: uncharacterized LOC101215607 [Cucumis sativus]

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/129 (45%), Positives = 82/129 (63%), Gaps = 10/129 (7%)

Query: 3   RLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSL 62
           +L+DC++ELLKF L S  + T DFDLG+SS FC++L + DP    S S    +     S 
Sbjct: 4   KLEDCVQELLKFVLQSSTNGTPDFDLGLSSAFCSSLFKHDP----STSNPLPY-----SK 54

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDL 122
            GVP YPLY+RL+LAL  S+  G FC  Y+K+ + N E  L+QKEE W +LI++KG S++
Sbjct: 55  AGVPPYPLYERLSLALWESLCSGTFCPMYEKMLMKNGESSLKQKEEMWLKLIMDKG-SEM 113

Query: 123 VDILKAVEF 131
           V +     F
Sbjct: 114 VQVRSGCSF 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454590|ref|XP_004145037.1| PREDICTED: uncharacterized protein LOC101215607 [Cucumis sativus]

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 77/117 (65%), Gaps = 9/117 (7%)

Query: 3   RLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSL 62
           +L+DC++ELLKF L S  + T DFDLG+SS FC++L + DP    S S    +     S 
Sbjct: 4   KLEDCVQELLKFVLQSSTNGTPDFDLGLSSAFCSSLFKHDP----STSNPLPY-----SK 54

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGS 119
            GVP YPLY+RL+LAL  S+  G FC  Y+K+ + N E  L+QKEE W +LI++KGS
Sbjct: 55  AGVPPYPLYERLSLALWESLCSGTFCPMYEKMLMKNGESSLKQKEEMWLKLIMDKGS 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:5019474741	388	AT2G43465 "AT2G43465" [Arabido	0.764	0.451	0.402	2.6e-31
TAIR|locus:2099699	244	AT3G03320 "AT3G03320" [Arabido	0.384	0.360	0.411	1.8e-22

TAIR|locus:5019474741 AT2G43465 "AT2G43465" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 76/189 (40%), Positives = 112/189 (59%)

Query:     1 MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVXXXXXXXXXXXXX 60
             M +++DC++E++KFTL    D  ++FD+G++ +FC+ LL  +                  
Sbjct:     1 MIKIRDCLDEMVKFTL----DYCVEFDIGLTGEFCSGLLCGESVLHDGERIESSSYALLH 56

Query:    61 XLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSS 120
                GVP YPLYK LAL L +S++ G+FC T++K++L  E   L++KE+EWS+LI  KGS 
Sbjct:    57 RFSGVPDYPLYKVLALGLLKSIDSGSFCGTFEKISLGKEVIRLKEKEDEWSKLINQKGS- 115

Query:   121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNRC---------GLCLVVYEL 171
             +LV+ LK V  EL VQEP FS +KDG++TVE RC   +Y+R            CL+   L
Sbjct:   116 ELVNALKDVFSELQVQEPLFSLMKDGIKTVEARCFEEEYDRIRRGGSMVMINKCLMFEVL 175

Query:   172 NFHNYVFFF 180
               H Y  F+
Sbjct:   176 ELHQYASFY 184

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099699 AT3G03320 "AT3G03320" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 42/102 (41%), Positives = 59/102 (57%)

Query:    91 YKKVALMNEECFLEQKE-----EEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKD 145
             YK +A    EC   + +     E++S+LI   G  DL+++LK V FELHVQEP+F+ +KD
Sbjct:    63 YKLLATALSECLASEGDKNSNLEKYSKLIHGLGY-DLINMLKEVNFELHVQEPYFTQLKD 121

Query:   146 GLETVEGRCTISDYNRCGL--------CLVVYELNFHNYVFF 179
             GL+TVEGRC + DY R           CL++   + H Y  F
Sbjct:   122 GLKTVEGRCAVGDYMRISSGDFLLFNKCLLLEVQDVHRYTSF 163

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00070143 hypothetical protein (380 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
COG4043	111	Preprotein translocase subunit Sec61beta [Intracel	99.73
cd06555	109	ASCH_PF0470_like ASC-1 homology domain, subfamily	99.72
PF04266	105	ASCH: ASCH domain; InterPro: IPR007374 The ASCH do	98.46
cd06541	105	ASCH ASC-1 homology or ASCH domain, a small beta-b	98.3
cd06552	100	ASCH_yqfb_like ASC-1 homology domain, subfamily si	94.45
PF12961	72	DUF3850: Domain of Unknown Function with PDB struc	81.94

>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.7e-18  Score=138.69  Aligned_cols=65  Identities=17%  Similarity=0.089  Sum_probs=62.0

Q ss_pred             hhhcccchhhHHhhhcccceeeeccccccccccC---------CeEEEEEeeeeeccchhhhhhhhcccccccc
Q 027001          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNRCG---------LCLVVYELNFHNYVFFFLGSFHIIFDSVKYC  194 (229)
Q Consensus       130 ~~EmhVQEp~fslik~GkKtVEGRLa~eky~rIk---------~cL~v~V~~Vr~Y~SF~e~~~~~~~d~vk~~  194 (229)
                      .|+|+|||+||++||+|+||||||+|+.++++||         ..|+|+|.+||.|.||++|+..|+++||.|-
T Consensus         2 ~~~mgL~eeylE~IK~GkK~iEvRl~d~krr~ik~GD~IiF~~~~l~v~V~~vr~Y~tF~~mlreepiE~v~p~   75 (111)
T COG4043           2 VHRMGLREEYLELIKAGKKKIEVRLADPKRRQIKPGDKIIFNGDKLKVEVIDVRVYDTFEEMLREEPIENVLPD   75 (111)
T ss_pred             ceeechHHHHHHHHHcccceEEEEecCHhhcCCCCCCEEEEcCCeeEEEEEEEeehhHHHHHHHhcChhhhCCC
Confidence            4899999999999999999999999999999998         4899999999999999999999999999874

>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470

Probab=99.72  E-value=5e-18  Score=134.13  Aligned_cols=64  Identities=22%  Similarity=0.155  Sum_probs=60.8

Q ss_pred             hhcccchhhHHhhhcccceeeeccccccccccC-------------CeEEEEEeeeeeccchhhhhhhhcccccccc
Q 027001          131 FELHVQEPFFSFIKDGLETVEGRCTISDYNRCG-------------LCLVVYELNFHNYVFFFLGSFHIIFDSVKYC  194 (229)
Q Consensus       131 ~EmhVQEp~fslik~GkKtVEGRLa~eky~rIk-------------~cL~v~V~~Vr~Y~SF~e~~~~~~~d~vk~~  194 (229)
                      +||||+++||++|++|+||||+||+|++|++|+             +++.|+|++|++|+||++|+.+++++++.|-
T Consensus         1 h~m~l~~~~F~~I~~G~KtiEiRlnD~kr~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~sF~~ll~~e~~~~~~~~   77 (109)
T cd06555           1 HEMGLEEEPFELIKSGKKTIEIRLNDEKRQQIKVGDKILFNDLDTGQQLLVKVVDIRKYDSFRELLEEEGLEKVGPG   77 (109)
T ss_pred             CccccChHHHHHHHcCCCEEEEEecccchhcCCCCCEEEEEEcCCCcEEEEEEEEEEecCCHHHHHHhcCHhhcCCC
Confidence            589999999999999999999999999999998             3799999999999999999999999999875

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

>PF04266 ASCH: ASCH domain; InterPro: IPR007374 The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain (IPR002478 from INTERPRO)

Probab=98.46  E-value=2e-07  Score=68.56  Aligned_cols=72  Identities=17%  Similarity=0.054  Sum_probs=53.5

Q ss_pred             cccchhhHHhhhcccceeeeccccccccccC--------------CeEEEEEeeeeeccchhhhhhhhccc---cccccc
Q 027001          133 LHVQEPFFSFIKDGLETVEGRCTISDYNRCG--------------LCLVVYELNFHNYVFFFLGSFHIIFD---SVKYCF  195 (229)
Q Consensus       133 mhVQEp~fslik~GkKtVEGRLa~eky~rIk--------------~cL~v~V~~Vr~Y~SF~e~~~~~~~d---~vk~~~  195 (229)
                      |+++++|+++|.+|+||+|.|+.+.++.+++              ....++|.+|+.| +|.++..+.+..   ++..+.
T Consensus         1 Lsi~~~~~~~Il~G~Kt~e~R~~~~~~~~~~g~~~iv~~~~~~~~~~~~v~v~~V~~~-~~~e~~~~~a~~eg~s~e~~~   79 (105)
T PF04266_consen    1 LSIKPEYAELILSGKKTAEIRLWDEKLPKIRGDLVIVFNTDPDGKPVGIVEVTEVEVY-PFSELTEEHARLEGESLEEWR   79 (105)
T ss_dssp             EEECHHHHHHHHTTSSCEEEECSTTTCCTTTTCEEEEETETTTTEEEEEEEEEEEEEE-EHHHHHHHHHHHHCC-HHHHH
T ss_pred             CEechHHHHHHHCCCcEEEEEcccceeccCCCCEEEEEEEecCCcEEEEEEEEEEEEe-hhhhCCHHHHhHhccCHHHHH
Confidence            5789999999999999999999999988873              2467799999999 999986554432   444444


Q ss_pred             ccchhHHHHH
Q 027001          196 ADQQGIYEWL  205 (229)
Q Consensus       196 ~~~~~~~~~~  205 (229)
                      +.-..+|.-.
T Consensus        80 ~~~~~~y~~~   89 (105)
T PF04266_consen   80 EEHRDIYPRE   89 (105)
T ss_dssp             HHHHHHCHHH
T ss_pred             HHHHHHcccc
Confidence            4444444433

It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation [].; PDB: 1TE7_A 2Z0T_C 1WK2_A 2DP9_A 1T62_A 3S9X_A 2E5O_A 1XNE_A 3IUW_B 1S04_A.

>cd06541 ASCH ASC-1 homology or ASCH domain, a small beta-barrel domain found in all three kingdoms of life

Probab=98.30  E-value=8.6e-07  Score=67.78  Aligned_cols=53  Identities=11%  Similarity=-0.092  Sum_probs=45.5

Q ss_pred             cccchhhHHhhhcccceeeeccccccccccC--------C----eEEEEEeeeeeccchhhhhhh
Q 027001          133 LHVQEPFFSFIKDGLETVEGRCTISDYNRCG--------L----CLVVYELNFHNYVFFFLGSFH  185 (229)
Q Consensus       133 mhVQEp~fslik~GkKtVEGRLa~eky~rIk--------~----cL~v~V~~Vr~Y~SF~e~~~~  185 (229)
                      +++.+++|++|.+|+||+|.|+++++++.++        .    .+.++|.+|+.|++|.++..+
T Consensus         2 l~~~~~~~~lI~~G~Ktat~r~~~~~~~~~k~Gd~~i~~~~~~~~~~i~v~~V~~~~~f~~~~~e   66 (105)
T cd06541           2 LMFGDRYGQLVVSGRKTIEIRSLDIYEQLPKAGDYLIILDGQQPLAIAEVVKVEIMPMVNELSEE   66 (105)
T ss_pred             ceechHHHHHHHCCCCEEEEEcchhcccCCCCCCEEEEecCCCcEEEEEEEEEEEEECHHHccHH
Confidence            5788999999999999999999999877776        3    589999999999999554433

ASCH resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.

>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb

Probab=94.45  E-value=0.047  Score=40.41  Aligned_cols=66  Identities=15%  Similarity=-0.098  Sum_probs=43.6

Q ss_pred             chhhHHhhhcccceeeeccccccccccCC----------eEEEEEeeeeeccchhhhh----hhhcccccccccccchhH
Q 027001          136 QEPFFSFIKDGLETVEGRCTISDYNRCGL----------CLVVYELNFHNYVFFFLGS----FHIIFDSVKYCFADQQGI  201 (229)
Q Consensus       136 QEp~fslik~GkKtVEGRLa~eky~rIk~----------cL~v~V~~Vr~Y~SF~e~~----~~~~~d~vk~~~~~~~~~  201 (229)
                      -..++.+|.+|+||++-|......-+.+.          ...++|.+|+. .+|.++.    .++||.++.-..++-+.+
T Consensus         5 ~~~~~~~I~sG~Kt~t~R~~~~~~~~~Gd~~~~~~~~~~~~~~~v~~V~~-~~~~~l~~~~A~~eG~~s~~~~~~~l~~~   83 (100)
T cd06552           5 FERYEEAILSGKKTATIRDGGESHLKPGDVVEVHTGERIFGEAEITSVEE-KTLGELTDEDARQEGFPSLEELKEALKEI   83 (100)
T ss_pred             hHHHHHHHHcCCCEEEEeCCCccCCCCCCEEEEEECCEEEEEEEEEEEEE-EEhhhCCHHHHHhcCCccHHHHHHHHHHH
Confidence            35789999999999999996554444442          45567888877 7787754    345665554444444443


Q ss_pred             H
Q 027001          202 Y  202 (229)
Q Consensus       202 ~  202 (229)
                      |
T Consensus        84 Y   84 (100)
T cd06552          84 Y   84 (100)
T ss_pred             c
Confidence            3

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)

Probab=81.94  E-value=0.94  Score=34.50  Aligned_cols=45  Identities=22%  Similarity=0.294  Sum_probs=34.2

Q ss_pred             hcccchhhHHhhhcccceeeeccccccccccC---------------CeEEEEEeeeeecc
Q 027001          132 ELHVQEPFFSFIKDGLETVEGRCTISDYNRCG---------------LCLVVYELNFHNYV  177 (229)
Q Consensus       132 EmhVQEp~fslik~GkKtVEGRLa~eky~rIk---------------~cL~v~V~~Vr~Y~  177 (229)
                      |+-++..||+.+.+|.||-|-|..|-+|+ ++               +.+.++|..|--|.
T Consensus         2 ~LKi~p~yF~~V~~G~KtfEiRkNDRdf~-VGD~L~L~E~~~~~YTGr~~~~~Ityi~~~~   61 (72)
T PF12961_consen    2 ELKILPEYFEAVLSGRKTFEIRKNDRDFQ-VGDILVLREWDNGEYTGREIEAEITYITDYE   61 (72)
T ss_pred             ceeecHHHHHHHHCCCceEEEEecCCCCC-CCCEEEEEEecCCCccccEEEEEEEEEeecC
Confidence            56788999999999999999999997664 22               45666666665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
2z0t_A	109	Putative uncharacterized protein PH0355; alpha/bet	1e-05
1xne_A	113	Hypothetical protein PF0469; GFT structural genomi	5e-05

>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A Length = 109

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNR 161
           +++E+ +QE +   IK G + +EGR       +
Sbjct: 1   MKWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQ 33

>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6 Length = 113

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 5/32 (15%), Positives = 14/32 (43%)

Query: 130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNR 161
            + L++++ +   +K G + +E R        
Sbjct: 3   VYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKD 34

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
2z0t_A	109	Putative uncharacterized protein PH0355; alpha/bet	99.77
1xne_A	113	Hypothetical protein PF0469; GFT structural genomi	99.75
3iuw_A	83	Activating signal cointegrator; NP_814290.1, struc	97.08
1te7_A	103	Hypothetical UPF0267 protein YQFB; alpha + beta, s	94.35

>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A

Probab=99.77  E-value=1.3e-19  Score=141.85  Aligned_cols=66  Identities=21%  Similarity=0.152  Sum_probs=62.1

Q ss_pred             hhhcccchhhHHhhhcccceeeeccccccccccC---------CeEEEEEeeeeeccchhhhhhhhccccccccc
Q 027001          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNRCG---------LCLVVYELNFHNYVFFFLGSFHIIFDSVKYCF  195 (229)
Q Consensus       130 ~~EmhVQEp~fslik~GkKtVEGRLa~eky~rIk---------~cL~v~V~~Vr~Y~SF~e~~~~~~~d~vk~~~  195 (229)
                      .||||||++||++|++|+|||||||+|++|++|+         .++.++|++||+|+||++|+.+++++++.|--
T Consensus         2 ~h~m~l~~~~f~~I~~G~KtiEiRlnd~k~~~ikvGD~I~f~~~~l~~~V~~v~~Y~sF~~ll~~e~~~~~~p~~   76 (109)
T 2z0t_A            2 KWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKEMLEKEGIENVLPGV   76 (109)
T ss_dssp             EEEECCCHHHHHHHHTTSCCEEEEECCTTGGGCCTTCEEEEGGGTEEEEEEEEEEESCHHHHHHHHCHHHHSTTC
T ss_pred             eEEEEcChHHHHHHHcCCCEEEEEecchhhhcCCCCCEEEECCCEEEEEEEEEEccCCHHHHHHhcChhhcCCCC
Confidence            4799999999999999999999999999999998         48999999999999999999999999997754

>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6

Probab=99.75  E-value=4.2e-19  Score=139.48  Aligned_cols=66  Identities=12%  Similarity=0.120  Sum_probs=61.9

Q ss_pred             hhhcccchhhHHhhhcccceeeeccccccccccC--------CeEEEEEeeeeeccchhhhhhhhccccccccc
Q 027001          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNRCG--------LCLVVYELNFHNYVFFFLGSFHIIFDSVKYCF  195 (229)
Q Consensus       130 ~~EmhVQEp~fslik~GkKtVEGRLa~eky~rIk--------~cL~v~V~~Vr~Y~SF~e~~~~~~~d~vk~~~  195 (229)
                      .+|||||++||++|++|+|||||||+|++|++|+        +++.++|++||.|+||++|+.+++++++.|--
T Consensus         3 ~h~m~l~~~~F~~I~sG~KtiEiR~nd~~~~~i~vGD~I~f~~~l~~~V~~v~~Y~sF~~ll~~e~~~~v~p~~   76 (113)
T 1xne_A            3 VYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDK   76 (113)
T ss_dssp             EEEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSSC
T ss_pred             eEEEecChHHHHHHHcCCcEEEEEecchhhhccCCCCEEEEccceEEEEEEEEecCCHHHHHHhcCHHhcCCCC
Confidence            4799999999999999999999999999999998        48899999999999999999999999997654

>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}

Probab=97.08  E-value=0.00015  Score=54.82  Aligned_cols=47  Identities=19%  Similarity=0.261  Sum_probs=37.2

Q ss_pred             hhhhcccchhhHHhhhcccceeeeccccccccccC---------------CeEEEEEeeeeec
Q 027001          129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNRCG---------------LCLVVYELNFHNY  176 (229)
Q Consensus       129 v~~EmhVQEp~fslik~GkKtVEGRLa~eky~rIk---------------~cL~v~V~~Vr~Y  176 (229)
                      ..+||.++.+||..|++|+||+|.|++|.+|+ ++               +.+.++|..|.-|
T Consensus         8 ~~H~lki~~~~F~~V~~G~Kt~EiR~nDr~~~-vGD~l~l~E~~~g~yTGr~i~~~Vt~i~d~   69 (83)
T 3iuw_A            8 TIHTLKIETEFFKAVKERRKTFEIRKNDRNFQ-VGDILILEEYMNGMYLDDECEAEVIYITDY   69 (83)
T ss_dssp             CEEEEEEEHHHHHHHHTTSCCEEEEECCSCCC-TTCEEEEEEEETTEEEEEEEEEEEEEEECT
T ss_pred             eEEEEEcCHHHHHHHHcCCcEEEEEecccCCC-CCCEEEEEEccCCCccCcEEEEEEEEEccc
Confidence            45889999999999999999999999998643 22               3566677777544

>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7

Probab=94.35  E-value=0.056  Score=40.49  Aligned_cols=53  Identities=15%  Similarity=0.001  Sum_probs=39.0

Q ss_pred             hcccchhhHHhhhcccceeeeccccccccccCCeE------------EEEEeeeeeccchhhhhhh
Q 027001          132 ELHVQEPFFSFIKDGLETVEGRCTISDYNRCGLCL------------VVYELNFHNYVFFFLGSFH  185 (229)
Q Consensus       132 EmhVQEp~fslik~GkKtVEGRLa~eky~rIk~cL------------~v~V~~Vr~Y~SF~e~~~~  185 (229)
                      .|...+++..+|.+|+||+.-|...+-+-+.+..+            .++|.+|+ +..|.++...
T Consensus         5 ~i~f~~~~~~~Il~G~KT~T~R~~~e~~~~~Gd~~~v~~~~~~~~~~~i~vt~V~-~~~~~eitee   69 (103)
T 1te7_A            5 DITFFQRFQDDILAGRKTITIRDESESHFKTGDVLRVGRFEDDGYFCTIEVTATS-TVTLDTLTEK   69 (103)
T ss_dssp             SCCCCHHHHHHHHTCCCEEEEECGGGCCCCTTSEEEEEETTTEEEEEEEEEEEEE-EECSTTTSTH
T ss_pred             EEEEcHHHHHHHHCCCCEEEEeCCCCCCCCCCCEEEEEECCCCcEEEEEEEEEEE-EEcHHHhCHH
Confidence            36678899999999999999998655455555333            35888887 6677776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1xnea_	113	b.122.1.6 (A:) Hypothetical protein PF0470 {Pyroco	1e-06
d1s04a_	110	b.122.1.6 (A:) Hypothetical protein PF0455 {Pyroco	3e-06

>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus furiosus [TaxId: 2261]} Length = 113

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0470
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 5/31 (16%), Positives = 14/31 (45%)

Query: 131 FELHVQEPFFSFIKDGLETVEGRCTISDYNR 161
           + L++++ +   +K G + +E R        
Sbjct: 4   YRLYLKDEYLEMVKSGKKRIEVRVAYPQLKD 34

>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus furiosus [TaxId: 2261]} Length = 110

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0455
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNR 161
           +E+E+ +QE F   IK   + +EGR       +
Sbjct: 1   MEWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQ 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1xnea_	113	Hypothetical protein PF0470 {Pyrococcus furiosus [	99.8
d1s04a_	110	Hypothetical protein PF0455 {Pyrococcus furiosus [	99.79

>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0470
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.80  E-value=7.9e-21  Score=148.08  Aligned_cols=64  Identities=13%  Similarity=0.150  Sum_probs=61.7

Q ss_pred             hhcccchhhHHhhhcccceeeeccccccccccC--------CeEEEEEeeeeeccchhhhhhhhcccccccc
Q 027001          131 FELHVQEPFFSFIKDGLETVEGRCTISDYNRCG--------LCLVVYELNFHNYVFFFLGSFHIIFDSVKYC  194 (229)
Q Consensus       131 ~EmhVQEp~fslik~GkKtVEGRLa~eky~rIk--------~cL~v~V~~Vr~Y~SF~e~~~~~~~d~vk~~  194 (229)
                      |+||||||||++|++|+|||||||++++|++|+        +++.++|.+|++|+||++|+.+++++++.|-
T Consensus         4 ~~m~l~~~~f~~Ik~G~K~iE~Rl~d~kr~~ik~GD~I~F~~~~~~kV~~v~~Y~sF~ell~~e~l~~vlp~   75 (113)
T d1xnea_           4 YRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPD   75 (113)
T ss_dssp             EEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSS
T ss_pred             EEEecCchhHHHHHcCCCEEEEEccchhHhhCCCCCEEEEEeeEEEEEEEEEEcCCHHHHHHHcCHHhhCCC
Confidence            799999999999999999999999999999998        7899999999999999999999999998863

>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0455
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.79  E-value=5.5e-21  Score=148.22  Aligned_cols=67  Identities=22%  Similarity=0.115  Sum_probs=63.0

Q ss_pred             hhhcccchhhHHhhhcccceeeeccccccccccC---------CeEEEEEeeeeeccchhhhhhhhcccccccccc
Q 027001          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNRCG---------LCLVVYELNFHNYVFFFLGSFHIIFDSVKYCFA  196 (229)
Q Consensus       130 ~~EmhVQEp~fslik~GkKtVEGRLa~eky~rIk---------~cL~v~V~~Vr~Y~SF~e~~~~~~~d~vk~~~~  196 (229)
                      .||||||+|||++|++|+|||||||++++|++|+         +++.|+|++|++|+||++|+.++|++++.|--.
T Consensus         2 ~~~m~L~~~~F~~Ik~G~K~IE~Rl~d~kr~~ik~GD~I~F~~~~l~vkV~~v~~y~sF~ell~~e~l~~~~p~~~   77 (110)
T d1s04a_           2 EWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSFREMLEKEGLENVLPGVK   77 (110)
T ss_dssp             CEEECCCHHHHHHHHHTTSSCCCCCCCHHHHHCCSSSCEEETTTTEEEEEEECCCBSCHHHHHHHTTSTTTSTTCS
T ss_pred             eEEEecCcchHHHHHcCCCEEEEEechhhHhhCCCCCEEEEeCCeEEEEEEEEEEcCCHHHHHHhcCccccCCCCC
Confidence            5899999999999999999999999999999998         579999999999999999999999999987543