Citrus Sinensis ID: 027045

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MKSCSAMETTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHccccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccHHHHcccccccccccccHccccccccEEEcccccccccccccccHHHHcccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHcccccEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mkscsameTTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFisvsdigyddkilpswvgeddgmssdccddwegvkcnatTRRVMQLSLNETIkfnyssgsgsALLLNMslfhpfeelqrldlpgnwftgiyenraydsfgslkqlkmlnlgdnffndsilpylnTLTSLTTLilsdnsiegsrtkqglANLRYLQVLDlsgnfnitsgslTRLGRLLR
Flexible Loop (DISEMBL)
MKSCSAMETTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFisvsdigydDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLdlsgnfnitsgsltrlgrllr
Low Complexity Region (SEG)
MKSCSAMETTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYlntltslttlilsdnsiEGSRTKQGLANLRYLQVLDLSGNFNItsgsltrlgrllr
Disordered region (IsUnstruct)
*********TSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSL********
Disordered Region (DISOPRED)
*********T**IKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR
Disordered Region (DISEMBL)
********TTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR
Disordered Region (DISPRO)
********TTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSCSAMETTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q0WR59	1048	Probable inactive recepto	no	no	0.716	0.156	0.320	6e-10
Q9C9H7	847	Receptor-like protein 12	no	no	0.694	0.187	0.325	6e-07
Q9C9N5	685	Probable inactive leucine	no	no	0.655	0.218	0.323	1e-06
Q9LP24	1120	Probable leucine-rich rep	no	no	0.711	0.145	0.324	2e-06
Q9SH71	587	Putative inactive recepto	no	no	0.454	0.177	0.328	6e-06
Q9FL63	614	Inactive leucine-rich rep	no	no	0.537	0.200	0.333	2e-05
C0LGT6	1031	LRR receptor-like serine/	no	no	0.720	0.160	0.323	4e-05
C0LGH8	664	Probable LRR receptor-lik	no	no	0.589	0.203	0.292	6e-05
Q42371	976	LRR receptor-like serine/	no	no	0.764	0.179	0.293	7e-05
Q6R2K1	699	Protein STRUBBELIG-RECEPT	no	no	0.558	0.183	0.315	8e-05

>sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 80/184 (43%), Gaps = 20/184 (10%)

Query: 31  HGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDD-GMSSDCCDDWEGVKCNA 89
           HG  A  ETE  +LLE   F   + D     +I  SW         S C +DW G+ C+ 
Sbjct: 17  HGANAVTETELRSLLE---FRKGIRDETSHQRI--SWSDTSSLTDPSTCPNDWPGISCDP 71

Query: 90  TTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDS 149
            T  ++ ++L+           G +  L  S       L+ L L GN F+G    R   S
Sbjct: 72  ETGSIIAINLDRR---------GLSGELKFSTLSGLTRLRNLSLSGNSFSG----RVVPS 118

Query: 150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLD 209
            G +  L+ L+L DN F   I   ++ L SL  L LS N  EG     G  NL+ L+ LD
Sbjct: 119 LGGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGG-FPSGFRNLQQLRSLD 177

Query: 210 LSGN 213
           L  N
Sbjct: 178 LHKN 181

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 78/178 (43%), Gaps = 19/178 (10%)

Query: 36  CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVM 95
           C + +R ALLE +  F     I     I+  W G  +  S+DCC  W GV CN  + +V+
Sbjct: 34  CRDDQRDALLEFRGEF----PINASWHIMNQWRGPWNK-STDCCL-WNGVTCNDKSGQVI 87

Query: 96  QLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQ 155
            L +  T   NY       L  N SLF   + L+ LDL      G        S G+L  
Sbjct: 88  SLDIPNTFLNNY-------LKTNSSLFK-LQYLRHLDLTNCNLYG----EIPSSLGNLSH 135

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           L ++NL  N F   I   +  L  L  LIL++N + G      L NL  L  L+L  N
Sbjct: 136 LTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTG-EIPSSLGNLSRLVNLELFSN 192

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 78/176 (44%), Gaps = 26/176 (14%)

Query: 61  DKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLN-- 118
           D +  +W   D    S+ C  W+GV CN   R V     N+ +  +     GS L L   
Sbjct: 41  DSVFTNWNSSD----SNPCS-WQGVTCNYDMRVVSIRLPNKRLSGSLDPSIGSLLSLRHI 95

Query: 119 ------------MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFF 166
                       + LF   + LQ L L GN F+G       +  GSLK L  L+L +N F
Sbjct: 96  NLRDNDFQGKLPVELFG-LKGLQSLVLSGNSFSGFVP----EEIGSLKSLMTLDLSENSF 150

Query: 167 NDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT 222
           N SI   L     L TL+LS NS  G       +NL +L+ L+LS  FN  +G++ 
Sbjct: 151 NGSISLSLIPCKKLKTLVLSKNSFSGDLPTGLGSNLVHLRTLNLS--FNRLTGTIP 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 84/191 (43%), Gaps = 28/191 (14%)

Query: 39  TERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLS 98
            E  ALL+ KS F + S        L SWV + +  +S  C  W GV CN+    + +L+
Sbjct: 32  AEANALLKWKSTFTNSSK-------LSSWVHDANTNTSFSCTSWYGVSCNSRGS-IEELN 83

Query: 99  LNET------IKFNYSSGSGSALL-LNMSL--------FHPFEELQRLDLPGNWFTGIYE 143
           L  T        F + S S  A + L+M+L        F    +L   DL  N  TG   
Sbjct: 84  LTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTG--- 140

Query: 144 NRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR 203
                S G+LK L +L L  N+    I   L  + S+T L LS N + GS     L NL+
Sbjct: 141 -EISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGS-IPSSLGNLK 198

Query: 204 YLQVLDLSGNF 214
            L VL L  N+
Sbjct: 199 NLMVLYLYENY 209

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SH71|Y1421_ARATH Putative inactive receptor-like protein kinase At1g64210 OS=Arabidopsis thaliana GN=At1g64210 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 60/143 (41%), Gaps = 39/143 (27%)

Query: 75  SSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPF-----EELQ 129
           SSD C  W GV CN    R++ + L   + FN              L  PF       L+
Sbjct: 46  SSDVCHSWTGVTCNENGDRIVSVRL-PAVGFN-------------GLIPPFTISRLSSLK 91

Query: 130 RLDLPGNWFTG--------------IYENRAYDS------FGSLKQLKMLNLGDNFFNDS 169
            L L  N FTG              +Y    + S      F  LK LK+L+L +N FN S
Sbjct: 92  FLSLRKNHFTGDFPSDFTNLKSLTHLYLQHNHLSGPLLAIFSELKNLKVLDLSNNGFNGS 151

Query: 170 ILPYLNTLTSLTTLILSDNSIEG 192
           I   L+ LTSL  L L++NS  G
Sbjct: 152 IPTSLSGLTSLQVLNLANNSFSG 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL63|Y5410_ARATH Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 OS=Arabidopsis thaliana GN=At5g24100 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 61/141 (43%), Gaps = 18/141 (12%)

Query: 75  SSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALL--LNMSLFHPFEELQRLD 132
           SS  C  W GV C+    RV  L L            G++LL  +         ELQ L 
Sbjct: 55  SSPVCTTWPGVTCDIDGTRVTALHL-----------PGASLLGVIPPGTISRLSELQILS 103

Query: 133 LPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG 192
           L  N   G +       F  LK+LK ++LG+N F+  +     T T+LT L L  N   G
Sbjct: 104 LRSNGLRGPFP----IDFLQLKKLKAISLGNNRFSGPLPSDYATWTNLTVLDLYSNRFNG 159

Query: 193 SRTKQGLANLRYLQVLDLSGN 213
           S    G ANL  L  L+L+ N
Sbjct: 160 S-IPAGFANLTGLVSLNLAKN 179

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 89/195 (45%), Gaps = 30/195 (15%)

Query: 38  ETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQL 97
           ET+  ALLE KS    VS+     ++L SW       SS  C+ W GV C     RV+ L
Sbjct: 29  ETDMQALLEFKS---QVSE-NNKREVLASW-----NHSSPFCN-WIGVTCGRRRERVISL 78

Query: 98  SLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLK 157
           +L    K    +G  S  + N+S       L+ L+L  N F      +     G L +L+
Sbjct: 79  NLG-GFKL---TGVISPSIGNLSF------LRLLNLADNSFGSTIPQKV----GRLFRLQ 124

Query: 158 MLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS-----G 212
            LN+  N     I   L+  + L+T+ LS N + G      L +L  L +LDLS     G
Sbjct: 125 YLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHL-GHGVPSELGSLSKLAILDLSKNNLTG 183

Query: 213 NFNITSGSLTRLGRL 227
           NF  + G+LT L +L
Sbjct: 184 NFPASLGNLTSLQKL 198

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGH8|Y1634_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 22/157 (14%)

Query: 59  YDDKIL--PSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALL 116
           Y+D +L   +W   +D  S  C  DW G+ C+ +   V        IK N S+ S    L
Sbjct: 39  YEDPLLVMSNW---NDPNSDPC--DWTGIYCSPSKDHV--------IKINISASSIKGFL 85

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
                      LQ L L GN   G          G+LK LK+L+LG+N     I   + +
Sbjct: 86  --APELGQITYLQELILHGNILIGTIPKE----IGNLKNLKILDLGNNHLMGPIPAEIGS 139

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           L+ +  + L  N + G    + L NL+YL+ L +  N
Sbjct: 140 LSGIMIINLQSNGLTGKLPAE-LGNLKYLRELHIDRN 175

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 47.4 bits (111), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 91/215 (42%), Gaps = 40/215 (18%)

Query: 18  MSLIWIIVLMNEIHGYKACLE-------TERTALLEIKSFFISVSDIGYDDKILPSWVGE 70
           M+L   IVL+    G+  CL         E   LLEIK  F  V+++ YD      W   
Sbjct: 1   MALFRDIVLL----GFLFCLSLVATVTSEEGATLLEIKKSFKDVNNVLYD------WTTS 50

Query: 71  DDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQ 129
               SSD C  W GV C   T  V+ L+L++  +    S   G             + L 
Sbjct: 51  P---SSDYCV-WRGVSCENVTFNVVALNLSDLNLDGEISPAIGD-----------LKSLL 95

Query: 130 RLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS 189
            +DL GN  +G    +  D  G    L+ L+L  N  +  I   ++ L  L  LIL +N 
Sbjct: 96  SIDLRGNRLSG----QIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQ 151

Query: 190 IEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224
           + G      L+ +  L++LDL+ N    SG + RL
Sbjct: 152 LIGP-IPSTLSQIPNLKILDLAQNK--LSGEIPRL 183

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6R2K1|SRF5_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 63/149 (42%), Gaps = 21/149 (14%)

Query: 78  CCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW 137
           C D WEGVKC  ++   +QLS  E        GS   LL N+     F+ L + +L GN 
Sbjct: 56  CEDSWEGVKCKGSSVTELQLSGFEL------GGSRGYLLSNLKSLTTFD-LSKNNLKGNI 108

Query: 138 FTGIYENRAYDSFG-------------SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              +  N A   F               +K L+ +NLG N  N  +      L+ L TL 
Sbjct: 109 PYQLPPNIANLDFSENELDGNVPYSLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLD 168

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
            S N + G +  Q  ANL  L+ L L  N
Sbjct: 169 FSLNKLSG-KLPQSFANLTSLKKLHLQDN 196

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
297745031	869	unnamed protein product [Vitis vinifera]	0.816	0.215	0.457	1e-36
240256417	908	receptor like protein 56 [Arabidopsis th	0.781	0.197	0.429	3e-32
10177158	888	disease resistance protein-like [Arabido	0.781	0.201	0.429	4e-32
240254367	976	receptor like protein 14 [Arabidopsis th	0.877	0.205	0.415	1e-31
12323813	951	disease resistance protein, putative; 63	0.807	0.194	0.430	2e-31
4432858	910	putative disease resistance protein [Ara	0.838	0.210	0.401	9e-31
240254535	935	receptor like protein 21 [Arabidopsis th	0.781	0.191	0.412	1e-30
359482735	1097	PREDICTED: receptor-like protein 12-like	0.820	0.171	0.435	1e-30
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.812	0.174	0.434	1e-30
297821945	910	leucine-rich repeat family protein [Arab	0.838	0.210	0.397	3e-30

>gi|297745031|emb|CBI38623.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 123/201 (61%), Gaps = 14/201 (6%)

Query: 19  SLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDC 78
           S IW ++++ +IHGYK CLE ER  LLE K F  S ++    D++LPSWV +++   SDC
Sbjct: 8   SWIWALMILIQIHGYKCCLEKERMGLLEFKRFLRSNNEDA--DRLLPSWVNDEE---SDC 62

Query: 79  CDDWEGVKCNATTRRVMQLSLN--ETIKFNYS----SGSGSALLLNMSLFHPFEELQRLD 132
           C  WE V CN+TT  V QLSLN    I+F +     +       LN+SLFHPFEEL  LD
Sbjct: 63  CY-WERVVCNSTTGTVTQLSLNNIRQIEFYHRVYGLAPPKKTWFLNVSLFHPFEELVSLD 121

Query: 133 LPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG 192
           L  NWF    E++ ++    LK+L+MLN+G N+FN+SI P +  LTSL  LIL +  +EG
Sbjct: 122 LSENWFADSLEDQGFEKLKGLKKLEMLNIGQNYFNNSIFPSVGALTSLRVLILRETKLEG 181

Query: 193 SRTKQGLANLRYLQVLDLSGN 213
           S   +       L+VLDLS N
Sbjct: 182 SYLDR--VPFNNLEVLDLSNN 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256417|ref|NP_199740.4| receptor like protein 56 [Arabidopsis thaliana] gi|332008410|gb|AED95793.1| receptor like protein 56 [Arabidopsis thaliana]

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 116/191 (60%), Gaps = 12/191 (6%)

Query: 24  IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
           ++L+  +HG+ +C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  WE
Sbjct: 1   MLLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTND---TKSDCCQ-WE 56

Query: 84  GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYE 143
            +KCN T+RR+  LSL       Y+S      LLN+SL HPFEE++ LDL  +   G+ +
Sbjct: 57  NIKCNRTSRRLTGLSL-------YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVD 109

Query: 144 N-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202
           +   Y S   L+ L++LN   N FN+SI P+LN  TSLTTL L  N++ G    + L NL
Sbjct: 110 DVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNL 169

Query: 203 RYLQVLDLSGN 213
             L++LDLSGN
Sbjct: 170 TNLELLDLSGN 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177158|dbj|BAB10347.1| disease resistance protein-like [Arabidopsis thaliana]

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 116/191 (60%), Gaps = 12/191 (6%)

Query: 24  IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
           ++L+  +HG+ +C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  WE
Sbjct: 1   MLLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTND---TKSDCCQ-WE 56

Query: 84  GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYE 143
            +KCN T+RR+  LSL       Y+S      LLN+SL HPFEE++ LDL  +   G+ +
Sbjct: 57  NIKCNRTSRRLTGLSL-------YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVD 109

Query: 144 N-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202
           +   Y S   L+ L++LN   N FN+SI P+LN  TSLTTL L  N++ G    + L NL
Sbjct: 110 DVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNL 169

Query: 203 RYLQVLDLSGN 213
             L++LDLSGN
Sbjct: 170 TNLELLDLSGN 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254367|ref|NP_177558.4| receptor like protein 14 [Arabidopsis thaliana] gi|332197442|gb|AEE35563.1| receptor like protein 14 [Arabidopsis thaliana]

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 135/219 (61%), Gaps = 18/219 (8%)

Query: 15  FSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFIS-VSDIGYDDKILPSWVGEDDG 73
           FS  +LIW+++L+ ++ GYK C+E ER ALLE+K + IS  +D G D  +LP+W  +   
Sbjct: 6   FSGQNLIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLD-SVLPTWTND--- 61

Query: 74  MSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDL 133
             S+CC  WEG+KCN T+ R+++LS+ +T   N+   S       +SL HPFEEL+ L+L
Sbjct: 62  TKSNCCR-WEGLKCNQTSGRIIELSIGQT---NFKESSLLN----LSLLHPFEELRSLNL 113

Query: 134 PG---NWFTGIYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS 189
            G   N F G++++   Y+S   L+ L++L+L  N FN+SI P+LN  TSLTTL +  N 
Sbjct: 114 SGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNY 173

Query: 190 IEGSRTKQGLANLRYLQVLDLS-GNFNITSGSLTRLGRL 227
           I G    + L NL  L++LDLS   +N +    T L +L
Sbjct: 174 IGGPLPIKELKNLTKLELLDLSRSGYNGSIPEFTHLEKL 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323813|gb|AAG51872.1|AC079678_2 disease resistance protein, putative; 6346-10057 [Arabidopsis thaliana]

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 128/202 (63%), Gaps = 17/202 (8%)

Query: 15  FSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFIS-VSDIGYDDKILPSWVGEDDG 73
           FS  +LIW+++L+ ++ GYK C+E ER ALLE+K + IS  +D G D  +LP+W  +   
Sbjct: 6   FSGQNLIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLD-SVLPTWTND--- 61

Query: 74  MSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDL 133
             S+CC  WEG+KCN T+ R+++LS+ +T   N+   S       +SL HPFEEL+ L+L
Sbjct: 62  TKSNCCR-WEGLKCNQTSGRIIELSIGQT---NFKESSLLN----LSLLHPFEELRSLNL 113

Query: 134 PG---NWFTGIYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS 189
            G   N F G++++   Y+S   L+ L++L+L  N FN+SI P+LN  TSLTTL +  N 
Sbjct: 114 SGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNY 173

Query: 190 IEGSRTKQGLANLRYLQVLDLS 211
           I G    + L NL  L++LDLS
Sbjct: 174 IGGPLPIKELKNLTKLELLDLS 195

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4432858|gb|AAD20706.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 128/209 (61%), Gaps = 17/209 (8%)

Query: 24  IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
           ++L+ ++HG  +C+E ER ALLE+K + +S S     D +LP+W  +     SDCC  W+
Sbjct: 1   MLLLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTND---TKSDCCQ-WD 56

Query: 84  GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPG---NWFTG 140
           G+KCN T+ RV++LS+ + + F  SS       LN+SL HPFEE++ L+L     N F G
Sbjct: 57  GIKCNRTSGRVIELSVGD-MYFKESSP------LNLSLLHPFEEVRSLNLSTEGYNEFNG 109

Query: 141 IYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199
            +++   Y S   L+ LK+++L  N+FN S  P+LN  TSLTTLIL+ N ++G    +GL
Sbjct: 110 FFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGL 169

Query: 200 ANLRYLQVLDLSGNFNITSGSLTRLGRLL 228
            +L  L++LDL    N  +GS+  L  L+
Sbjct: 170 KDLTNLELLDLRA--NKLNGSMQELQNLI 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254535|ref|NP_180117.4| receptor like protein 21 [Arabidopsis thaliana] gi|330252611|gb|AEC07705.1| receptor like protein 21 [Arabidopsis thaliana]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 121/194 (62%), Gaps = 15/194 (7%)

Query: 24  IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
           ++L+ ++HG  +C+E ER ALLE+K + +S S     D +LP+W  +     SDCC  W+
Sbjct: 1   MLLLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTND---TKSDCCQ-WD 56

Query: 84  GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPG---NWFTG 140
           G+KCN T+ RV++LS+ + + F  SS       LN+SL HPFEE++ L+L     N F G
Sbjct: 57  GIKCNRTSGRVIELSVGD-MYFKESSP------LNLSLLHPFEEVRSLNLSTEGYNEFNG 109

Query: 141 IYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199
            +++   Y S   L+ LK+++L  N+FN S  P+LN  TSLTTLIL+ N ++G    +GL
Sbjct: 110 FFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGL 169

Query: 200 ANLRYLQVLDLSGN 213
            +L  L++LDL  N
Sbjct: 170 KDLTNLELLDLRAN 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/202 (43%), Positives = 123/202 (60%), Gaps = 14/202 (6%)

Query: 20  LIWI-IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDC 78
           L+W+ I+L+ +I   K C+E E+  LLE K+F + ++D  + D +LPSW+   D  +S+C
Sbjct: 9   LMWVFILLLVQICECKGCIEEEKMGLLEFKAF-LKLND-EHADFLLPSWL---DNNTSEC 63

Query: 79  CDDWEGVKCNATTRRVMQLSLNETIKFN-------YSSGSGSALLLNMSLFHPFEELQRL 131
           C+ WE V CN TT +V +L LN+  +         Y   +    LLN+SLF PFEEL  L
Sbjct: 64  CN-WERVICNPTTGQVKKLFLNDIRQQQNFLEDNWYYYENAKFWLLNVSLFLPFEELHHL 122

Query: 132 DLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIE 191
           +L  N F G  EN  + S   LK+L++LNLG N+FN +I+  L+ LTSL TL++S+N IE
Sbjct: 123 NLSANSFDGFIENEGFKSLSKLKKLEILNLGYNWFNKTIIKQLSGLTSLKTLVVSNNYIE 182

Query: 192 GSRTKQGLANLRYLQVLDLSGN 213
           G    QG   L  LQ LDLS N
Sbjct: 183 GLFPSQGFCQLNKLQELDLSYN 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 121/198 (61%), Gaps = 12/198 (6%)

Query: 20  LIWI-IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDC 78
           L+W+ I+L+ +I G K C+E E+  LLE K+F    ++  + D +LPSW+   D  +S+C
Sbjct: 9   LMWVFILLLVQICGCKGCIEEEKMGLLEFKAFLKLNNE--HADFLLPSWI---DNNTSEC 63

Query: 79  CDDWEGVKCNATTRRVMQLSLNETIKFN-----YSSGSGSALLLNMSLFHPFEELQRLDL 133
           C+ WE V CN TT RV +L  N+  + +     Y   +    LLN+SLF PFEEL  L+L
Sbjct: 64  CN-WERVICNPTTGRVKKLFFNDITRQHLEDNWYYYENVKFWLLNVSLFLPFEELHHLNL 122

Query: 134 PGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS 193
             N F G  EN  + S   LK+L++LNL DN FN +I+  L+ LTSL TL++S N IEG 
Sbjct: 123 SANSFDGFIENEGFKSLSKLKKLEILNLRDNQFNKTIIKQLSGLTSLKTLVVSYNYIEGL 182

Query: 194 RTKQGLANLRYLQVLDLS 211
              Q  A+L  L++LDLS
Sbjct: 183 FPSQDFASLNNLEILDLS 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821945|ref|XP_002878855.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324694|gb|EFH55114.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 126/209 (60%), Gaps = 17/209 (8%)

Query: 24  IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
           ++L+ ++HG K C+  ER ALLE+K + +S S     D +LP+W  +     SDCC  W+
Sbjct: 1   MLLLGQLHGCKGCIMKEREALLELKKYLMSRSRESGLDYVLPTWTND---TKSDCCQ-WD 56

Query: 84  GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPG---NWFTG 140
           G+KCN T+RRV+ LS+ + + F  SS       LN+SL HPFEE++ L+L     N F G
Sbjct: 57  GIKCNRTSRRVIGLSVGD-MYFKESSP------LNLSLLHPFEEVRSLNLSTEGYNEFNG 109

Query: 141 IYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199
            +++   Y S   L+ L++++L  N+FN SI P+LN  TSLTT+ L+ N ++G    +GL
Sbjct: 110 FFDDVEGYRSLSRLRNLQIMDLSTNYFNYSIFPFLNAATSLTTIFLTYNEMDGPFPIKGL 169

Query: 200 ANLRYLQVLDLSGNFNITSGSLTRLGRLL 228
            +L  L++LDL    N   GS+  L  L+
Sbjct: 170 KDLTNLELLDLRA--NKLKGSMQELKNLI 196

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.807	0.189	0.396	1.3e-31
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.781	0.197	0.376	1.5e-28
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.781	0.191	0.360	2e-27
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.794	0.188	0.34	3.6e-27
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.707	0.149	0.335	2.6e-18
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.585	0.150	0.375	8.4e-18
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.606	0.193	0.331	4.3e-11
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.829	0.217	0.284	9e-09
TAIR|locus:2154463	589	AT5G23400 [Arabidopsis thalian	0.602	0.234	0.323	7e-08
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.545	0.125	0.292	3.3e-07

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 80/202 (39%), Positives = 120/202 (59%)

Query:    15 FSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFIS-VSDIGYDDKILPSWVGEDDG 73
             FS  +LIW+++L+ ++ GYK C+E ER ALLE+K + IS  +D G D  +LP+W  +   
Sbjct:     6 FSGQNLIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLDS-VLPTWTNDT-- 62

Query:    74 MSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDL 133
               S+CC  WEG+KCN T+ R+++LS+ +T   N+   S    LLN+SL HPFEEL+ L+L
Sbjct:    63 -KSNCCR-WEGLKCNQTSGRIIELSIGQT---NFKESS----LLNLSLLHPFEELRSLNL 113

Query:   134 PG---NWFTGIYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXX 189
              G   N F G++++   Y+S   L+ L++L+L  N FN+SI P+                
Sbjct:   114 SGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNY 173

Query:   190 XEGSRTKQGLANLRYLQVLDLS 211
               G    + L NL  L++LDLS
Sbjct:   174 IGGPLPIKELKNLTKLELLDLS 195

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
 Identities = 72/191 (37%), Positives = 104/191 (54%)

Query:    24 IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
             ++L+  +HG+ +C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  WE
Sbjct:     1 MLLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDT---KSDCCQ-WE 56

Query:    84 GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYE 143
              +KCN T+RR+  LSL       Y+S      LLN+SL HPFEE++ LDL  +   G+ +
Sbjct:    57 NIKCNRTSRRLTGLSL-------YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVD 109

Query:   144 N-RAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTKQGLANL 202
             +   Y S   L+ L++LN   N FN+SI P+                  G    + L NL
Sbjct:   110 DVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNL 169

Query:   203 RYLQVLDLSGN 213
               L++LDLSGN
Sbjct:   170 TNLELLDLSGN 180

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
 Identities = 70/194 (36%), Positives = 109/194 (56%)

Query:    24 IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
             ++L+ ++HG  +C+E ER ALLE+K + +S S     D +LP+W  +     SDCC  W+
Sbjct:     1 MLLLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDT---KSDCCQ-WD 56

Query:    84 GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLP--G-NWFTG 140
             G+KCN T+ RV++LS+ + + F  SS       LN+SL HPFEE++ L+L   G N F G
Sbjct:    57 GIKCNRTSGRVIELSVGD-MYFKESSP------LNLSLLHPFEEVRSLNLSTEGYNEFNG 109

Query:   141 IYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTKQGL 199
              +++   Y S   L+ LK+++L  N+FN S  P+                 +G    +GL
Sbjct:   110 FFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGL 169

Query:   200 ANLRYLQVLDLSGN 213
              +L  L++LDL  N
Sbjct:   170 KDLTNLELLDLRAN 183

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
 Identities = 68/200 (34%), Positives = 116/200 (58%)

Query:    19 SLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDC 78
             +LIW+++LM ++HGYK+C++ E+ AL E++   IS ++    + +LP+W  +    +SDC
Sbjct:    10 NLIWVMLLMGQLHGYKSCIDEEKIALFELRKHMISRTE---SESVLPTWTNDT---TSDC 63

Query:    79 CDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW 137
             C  W+GV CN  + RV ++S    ++K N         LLN+SL HPFE+++ L+L  + 
Sbjct:    64 CR-WKGVACNRVSGRVTEISFGGLSLKDNS--------LLNLSLLHPFEDVRSLNLSSSR 114

Query:   138 FTGIYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTK 196
              +G++++   Y S   L++L++L+L  N FN+SI  +                 +GS   
Sbjct:   115 CSGLFDDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPA 174

Query:   197 QGLANLRYLQVLDLSGN-FN 215
             + L +L  L++LDLS N FN
Sbjct:   175 KELRDLTNLELLDLSRNRFN 194

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
 Identities = 59/176 (33%), Positives = 92/176 (52%)

Query:    44 LLEIKSFFISVSDIGYDDK----ILPSWVGEDDGMSSDCCDDWEGVKCN-ATTRRVMQLS 98
             LL++KS+  ++ D   +++    IL SW   +     DCC  WE VKC+ A    V+ LS
Sbjct:     3 LLQLKSYLKNLVDAEEEEEEGLSILKSWTHHE----GDCCR-WERVKCSDAINGHVIGLS 57

Query:    99 LNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYEN-RAYDSFGSLKQLK 157
             L+  +   + S + S   LN+SL H F +LQ L+L  NWFT + ++   + SFG+L +L 
Sbjct:    58 LDRLVPVAFESQTRS---LNLSLLHSFPQLQSLNLSWNWFTNLSDHFLGFKSFGTLDKLT 114

Query:   158 MLNLGDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTKQGLANLRYLQVLDLSGN 213
              L+   N F++SI+P+                 EG    Q L+N+  L+VL+L  N
Sbjct:   115 TLDFSHNMFDNSIVPFLNAATSIRSLHLESNYMEGVFPPQELSNMTNLRVLNLKDN 170

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
 Identities = 54/144 (37%), Positives = 78/144 (54%)

Query:    74 MSSD--CCDDWEGVKCNATTRRVMQLSLN-ETIKFNYSSGSGSALLLNMSLFHPFEELQR 130
             MSSD  CC  W  +KC+ T++RV+ +SL+ E+I+            LN++ F+PFEELQ 
Sbjct:     1 MSSDRSCCH-WRRIKCDITSKRVIGISLSLESIR-----PPDPLPQLNLTFFYPFEELQS 54

Query:   131 LDLPGNWFTGIYENR-AYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXX 189
             L+L   +F G ++ R      GSL+ L+ L+LG NF++ S+LPY                
Sbjct:    55 LNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNL 114

Query:   190 XEGSRTKQGLANLRYLQVLDLSGN 213
              +G    Q L NL  L+VLDL  N
Sbjct:   115 FKGGFPVQELINLTSLEVLDLKFN 138

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
 Identities = 53/160 (33%), Positives = 81/160 (50%)

Query:    13 IKFSLMSLIWIIVLMNE-----IHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSW 67
             +K ++ SL  I+ L N       H    C + ++ ALLE K+ F  V +    + I+   
Sbjct:     1 MKMTIWSLCLILSLSNSKLVLASHVKHLCRQDQKNALLEFKNEFY-VHEFN-SNGIVGVK 58

Query:    68 VGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEE 127
               E    ++DCC  W+G+ C+  T +V++L L  +    + +G    L  + SLF   + 
Sbjct:    59 KTEKWRNNTDCCS-WDGISCDPKTGKVVELDLMNS----FLNGP---LRYDSSLFR-LQH 109

Query:   128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGD-NFF 166
             L  LDL  N F+GI      DS GSLK L++L+LGD N F
Sbjct:   110 LHNLDLGSNNFSGILP----DSIGSLKYLRVLSLGDCNLF 145

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
 Identities = 60/211 (28%), Positives = 85/211 (40%)

Query:     5 SAMETTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFF-ISVSDIGYDDKI 63
             S +  T +  F   S    +  +  IH    C   +R ALLE K+ F I     G    +
Sbjct:     2 SLIPITFYFLFLFFSNFRGVFAVPNIH---LCHFEQRDALLEFKNEFKIKKPCFGCPSPL 58

Query:    64 -LPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLF 122
                SW   ++G  SDCC  W+G+ C+A T  V+++ L  +    +   +      N+S+ 
Sbjct:    59 KTKSW---ENG--SDCCH-WDGITCDAKTGEVIEIDLMCSCLHGWFHSNS-----NLSML 107

Query:   123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXX 182
               F  L  LDL  N  +G    +   S G+L  L  L+L  N F+  I P          
Sbjct:   108 QNFHFLTTLDLSYNHLSG----QISSSIGNLSHLTTLDLSGNNFSGWI-PSSLGNLFHLT 162

Query:   183 XXXXXXXXEGSRTKQGLANLRYLQVLDLSGN 213
                      G      L NL YL  LDLS N
Sbjct:   163 SLHLYDNNFGGEIPSSLGNLSYLTFLDLSTN 193

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2154463 AT5G23400 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 54/167 (32%), Positives = 76/167 (45%)

Query:    13 IKFSLMSLIWIIVLMNEI----HGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWV 68
             +K+ LM+L+++  L+            C   +R  LL  KS  I     G    +L SWV
Sbjct:     4 LKWVLMNLLFVSALVRNFVLSSSQQVICSSQDRATLLGFKSSIIE-DTTG----VLDSWV 58

Query:    69 GEDDGMSSDCCD-DWEGVKCNATTRRVMQLSLNETIKFN--YSSGSGSALLLNMSLFHPF 125
             G+D      CC+ DWEGV+CN  T +V  L L   +     Y  G+ S  L N+      
Sbjct:    59 GKD------CCNGDWEGVQCNPATGKVTGLVLQSAVNEPTLYMKGTLSPSLGNL------ 106

Query:   126 EELQRLDLPGNWF-TGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171
               L+ L + GN F TG   N    SF +L  L+ L L DN    ++L
Sbjct:   107 RSLELLLITGNKFITGSIPN----SFSNLTSLRQLILDDNSLQGNVL 149

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 41/140 (29%), Positives = 67/140 (47%)

Query:    84 GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGN------W 137
             GV+CN  + R+  ++    I F   +      LLN+SL HPFE+++ LDL  +       
Sbjct:     2 GVECNRKSGRITNIAFG--IGFIIENP-----LLNLSLLHPFEDVRSLDLSSSRSCEDCG 54

Query:   138 FTGIYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTK 196
             F+G++++   Y S   L+ L++L+L  + FN+SI P+                       
Sbjct:    55 FSGLFDDVEGYKSLSRLRNLEILDLSSHRFNNSIFPFLNAATSLTTLFLTYNNMHSPFLV 114

Query:   197 QGLANLRYLQVLDLSGN-FN 215
             +   +L  L+ LDL GN FN
Sbjct:   115 KEFKDLTNLEHLDLRGNRFN 134

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207
           +    L+ L+ +NL  N    +I P L ++TSL  L LS NS  GS   + L  L  L++
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRI 494

Query: 208 LDLSGNFNITSGSLTRL--GRLLR 229
           L+L+GN    SG +     GRLL 
Sbjct: 495 LNLNGNS--LSGRVPAALGGRLLH 516

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ LDL  N  +G       +  GS   LK+L+LG N     I   L  LTSL  L L+ 
Sbjct: 142 LETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 188 NSIEGS--RTKQGLANLR--YLQVLDLSGNFNITSGSLTRLGRL 227
           N + G   R    + +L+  YL   +LSG      G LT L  L
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              LQ ++L GN   G        S GS+  L++L+L  N FN SI   L  LTSL  L 
Sbjct: 441 LRHLQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 185 LSDNSIEG 192
           L+ NS+ G
Sbjct: 497 LNGNSLSG 504

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  LDL  N  TG        S G+LK L+ L L  N  +  I P + +L  L +L LSD
Sbjct: 238 LNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
           NS+ G    + +  L+ L++L L  N N T     +LT L RL
Sbjct: 294 NSLSG-EIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRL 334

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTLILS 186
           L+ LDL  N  T I +     +F  L  LK+L+L  N    SI P   + L SL +L LS
Sbjct: 2   LKSLDLSNNRLTVIPD----GAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLS 56

Query: 187 DNSI 190
            N++
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 10/52 (19%)

Query: 37 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCN 88
          L  +R ALL  KS              L SW        SD C  W GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPS-----GALSSWNPSS----SDPCS-WTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLIL 185
           + L+ LDL  N F+G    +     GSL +L  L L +N  +  I   L++   L +L L
Sbjct: 475 KRLENLDLSRNQFSGAVPRK----LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 186 SDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           S N + G +     + +  L  LDLS N
Sbjct: 531 SHNQLSG-QIPASFSEMPVLSQLDLSQN 557

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 39/209 (18%)

Query: 36  CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRV- 94
            L  E   LL   SF  S++D     K L +W       S+D C  W+G+ CN ++R V 
Sbjct: 25  MLHAEELELL--LSFKSSIND---PLKYLSNW-----NSSADVCL-WQGITCNNSSRVVS 73

Query: 95  ----------------MQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWF 138
                            +L   +TI  + +  SG    +   +F     L+ L+L  N F
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP---IPDDIFTTSSSLRYLNLSNNNF 130

Query: 139 TGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198
           TG          GS+  L+ L+L +N  +  I   + + +SL  L L  N + G +    
Sbjct: 131 TGSIPR------GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNS 183

Query: 199 LANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           L NL  L+ L L+ N  +       LG++
Sbjct: 184 LTNLTSLEFLTLASN-QLVGQIPRELGQM 211

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-----NTLTS 179
              L+ LDL  N  T    +   ++  SLK L++LNLGDN   D+    L     +   S
Sbjct: 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251

Query: 180 LTTLILSDNSIE--GSRT-KQGLANLRYLQVLDLSGN 213
           L TL LS N I   G++   + LA    L  LDL GN
Sbjct: 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
PLN03150	623	hypothetical protein; Provisional	99.69
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.36
PLN03150	623	hypothetical protein; Provisional	99.22
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.19
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.07
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.06
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.06
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.79
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.64
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.63
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.61
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.6
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.58
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.51
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.47
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.45
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.42
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.41
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.3
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.27
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.27
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.25
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.22
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.05
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.93
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.84
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.8
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.73
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.64
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.5
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.43
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.71
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.56
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.5
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.88
PRK15386	426	type III secretion protein GogB; Provisional	95.73
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.37
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.31
PRK15386	426	type III secretion protein GogB; Provisional	94.83
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.43
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.9
smart00370	26	LRR Leucine-rich repeats, outliers.	93.9
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	92.23
smart00370	26	LRR Leucine-rich repeats, outliers.	91.81
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.81
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.64
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.83
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.34
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.93

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=5.2e-20  Score=179.04  Aligned_cols=162  Identities=30%  Similarity=0.438  Sum_probs=121.6

Q ss_pred             CHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCcEEEEecCC-CccccccCCCCCc-
Q 027045           37 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSA-  114 (229)
Q Consensus        37 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C~~w~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~~~-  114 (229)
                      .+.|+.+|++||+++.    +|.+  .+.+|+.     ..+|| .|.||+|+. .++|+.|++++ ++.+.++...... 
T Consensus        27 ~~~~~~~l~~~~~~~~----~~~~--~~~~w~~-----~~~~c-~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~   93 (968)
T PLN00113         27 HAEELELLLSFKSSIN----DPLK--YLSNWNS-----SADVC-LWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLP   93 (968)
T ss_pred             CHHHHHHHHHHHHhCC----CCcc--cCCCCCC-----CCCCC-cCcceecCC-CCcEEEEEecCCCccccCChHHhCCC
Confidence            5689999999999986    5554  6789987     67899 999999975 57999999999 8887554322111 


Q ss_pred             --c-----------ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCcc
Q 027045          115 --L-----------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT  181 (229)
Q Consensus       115 --~-----------~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  181 (229)
                        .           .++...+..+++|++|++++|++++.+|.      +.+++|++|++++|.+++.+|..++.+++|+
T Consensus        94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  167 (968)
T PLN00113         94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK  167 (968)
T ss_pred             CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc------cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence              1           11122334666777777777777665553      3467788888888888777888888888888


Q ss_pred             EEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       182 ~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +|++++|.+.+.+|. .+.++++|++|++++|.+.+.
T Consensus       168 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~  203 (968)
T PLN00113        168 VLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQ  203 (968)
T ss_pred             EEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCc
Confidence            888888888877776 788888888888888887764

>PLN03150 hypothetical protein; Provisional

Probab=99.69  E-value=2.5e-16  Score=146.60  Aligned_cols=152  Identities=28%  Similarity=0.395  Sum_probs=125.2

Q ss_pred             CCCCHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCceecCC--C--CcEEEEecCC-Cccc
Q 027045           34 KACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCC---DDWEGVKCNAT--T--RRVMQLSLNE-TIKF  105 (229)
Q Consensus        34 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C---~~w~gv~C~~~--~--~~v~~L~L~~-~l~~  105 (229)
                      ..+.+.|.++|+.+|+++.    ++.    ..+|.+      .+||   ..|.||.|...  .  .+|+.|+|++ ++.|
T Consensus       367 ~~t~~~~~~aL~~~k~~~~----~~~----~~~W~g------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g  432 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLG----LPL----RFGWNG------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG  432 (623)
T ss_pred             cccCchHHHHHHHHHHhcC----Ccc----cCCCCC------CCCCCcccccccceeeccCCCCceEEEEEECCCCCccc
Confidence            4566789999999999985    221    237876      2332   16999999531  1  2599999999 8888


Q ss_pred             cccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEec
Q 027045          106 NYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLIL  185 (229)
Q Consensus       106 ~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  185 (229)
                      .+|           ..+..+++|+.|+|++|+++|.+|.    .++.+++|+.|+|++|.++|.+|+.++++++|++|+|
T Consensus       433 ~ip-----------~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        433 FIP-----------NDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             cCC-----------HHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            444           4578899999999999999999998    9999999999999999999999999999999999999


Q ss_pred             cCCcCCCCCChhhcCCC-CCCCEEeccCCcC
Q 027045          186 SDNSIEGSRTKQGLANL-RYLQVLDLSGNFN  215 (229)
Q Consensus       186 s~N~l~~~ip~~~~~~l-~~L~~L~L~~N~l  215 (229)
                      ++|+++|.+|. .++.. .++..+++.+|..
T Consensus       498 s~N~l~g~iP~-~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        498 NGNSLSGRVPA-ALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cCCcccccCCh-HHhhccccCceEEecCCcc
Confidence            99999999998 66653 5678899998864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.36  E-value=1.4e-12  Score=127.19  Aligned_cols=95  Identities=27%  Similarity=0.342  Sum_probs=85.9

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      +..+.++++|++|++++|++.+.+|.    .+..+++|++|++++|.+++.+|..+..+++|+.|+|++|++++.+|. .
T Consensus       492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~  566 (968)
T PLN00113        492 PRKLGSLSELMQLKLSENKLSGEIPD----ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK-N  566 (968)
T ss_pred             ChhhhhhhccCEEECcCCcceeeCCh----HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh-h
Confidence            34577888999999999999998998    899999999999999999999999999999999999999999988887 7


Q ss_pred             cCCCCCCCEEeccCCcCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +.++++|++|++++|++++.
T Consensus       567 l~~l~~L~~l~ls~N~l~~~  586 (968)
T PLN00113        567 LGNVESLVQVNISHNHLHGS  586 (968)
T ss_pred             HhcCcccCEEeccCCcceee
Confidence            88999999999999998873

>PLN03150 hypothetical protein; Provisional

Probab=99.22  E-value=2.2e-11  Score=113.69  Aligned_cols=87  Identities=33%  Similarity=0.447  Sum_probs=82.8

Q ss_pred             CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC
Q 027045          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (229)
Q Consensus       127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~  206 (229)
                      .++.|+|++|.++|.+|.    .+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|++++.+|. .++++++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence            378899999999999998    999999999999999999999999999999999999999999998997 899999999


Q ss_pred             EEeccCCcCCCC
Q 027045          207 VLDLSGNFNITS  218 (229)
Q Consensus       207 ~L~L~~N~l~~~  218 (229)
                      +|+|++|++++.
T Consensus       494 ~L~Ls~N~l~g~  505 (623)
T PLN03150        494 ILNLNGNSLSGR  505 (623)
T ss_pred             EEECcCCccccc
Confidence            999999999875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.19  E-value=1.3e-12  Score=116.98  Aligned_cols=96  Identities=28%  Similarity=0.269  Sum_probs=70.8

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      ++...+-++++|+.|++|+|.|..+.++    .+...++|++|+|++|+++...+..|..+..|+.|+|++|.++. +..
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e  358 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAE  358 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeecc----hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHh
Confidence            4556677788888888888888888777    88888888888888888887777777777777777777777765 444


Q ss_pred             hhcCCCCCCCEEeccCCcCCC
Q 027045          197 QGLANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N~l~~  217 (229)
                      ..|..+++|+.|||++|.++.
T Consensus       359 ~af~~lssL~~LdLr~N~ls~  379 (873)
T KOG4194|consen  359 GAFVGLSSLHKLDLRSNELSW  379 (873)
T ss_pred             hHHHHhhhhhhhcCcCCeEEE
Confidence            455566666666666665543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.14  E-value=1e-12  Score=101.75  Aligned_cols=109  Identities=24%  Similarity=0.327  Sum_probs=65.7

Q ss_pred             CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC
Q 027045           91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS  169 (229)
Q Consensus        91 ~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~  169 (229)
                      ...++++.|+. ++.-            .+..+..+.+|+.|++++|+|+. .|.    .++.+++|+.|+++-|++. .
T Consensus        32 ~s~ITrLtLSHNKl~~------------vppnia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnrl~-~   93 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTV------------VPPNIAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNRLN-I   93 (264)
T ss_pred             hhhhhhhhcccCceee------------cCCcHHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhhhh-c
Confidence            34677888888 6543            22334556666666666666666 444    5666666666666666665 5


Q ss_pred             CcccccCCCCccEEeccCCcCCC-C-----------------------CChhhcCCCCCCCEEeccCCcCCCC
Q 027045          170 ILPYLNTLTSLTTLILSDNSIEG-S-----------------------RTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       170 ~p~~l~~l~~L~~L~Ls~N~l~~-~-----------------------ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      .|..|+.++.|+.|||++|++.. .                       +|. .++++++|+.|.+..|.+-..
T Consensus        94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~l  165 (264)
T KOG0617|consen   94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSL  165 (264)
T ss_pred             CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhC
Confidence            66666666666666666666553 1                       444 455666666666666655443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=5.9e-11  Score=93.42  Aligned_cols=106  Identities=31%  Similarity=0.418  Sum_probs=43.8

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccC-CCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFH-PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      +.++|+|.+ .+..           +  ..++ .+.+|+.|++++|.|+.+ +     .+..+++|+.|++++|+++. +
T Consensus        20 ~~~~L~L~~n~I~~-----------I--e~L~~~l~~L~~L~Ls~N~I~~l-~-----~l~~L~~L~~L~L~~N~I~~-i   79 (175)
T PF14580_consen   20 KLRELNLRGNQIST-----------I--ENLGATLDKLEVLDLSNNQITKL-E-----GLPGLPRLKTLDLSNNRISS-I   79 (175)
T ss_dssp             -----------------------------S--TT-TT--EEE-TTS--S---T-----T----TT--EEE--SS---S--
T ss_pred             cccccccccccccc-----------c--cchhhhhcCCCEEECCCCCCccc-c-----CccChhhhhhcccCCCCCCc-c
Confidence            467888888 6653           1  2233 578999999999999984 4     68889999999999999994 5


Q ss_pred             cccc-cCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          171 LPYL-NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       171 p~~l-~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      .+.+ ..+++|+.|++++|+|...-.-..+..+++|++|++.+|+++..
T Consensus        80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            4444 46899999999999998622223577899999999999998865

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.07  E-value=8.5e-11  Score=76.45  Aligned_cols=59  Identities=34%  Similarity=0.432  Sum_probs=30.2

Q ss_pred             CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCc
Q 027045          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS  189 (229)
Q Consensus       127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  189 (229)
                      +|++|++++|+++.+.+.    .|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            445555555555554444    45555555555555555554444445555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.06  E-value=8.4e-11  Score=76.49  Aligned_cols=61  Identities=31%  Similarity=0.377  Sum_probs=55.7

Q ss_pred             CCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcC
Q 027045          154 KQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN  215 (229)
Q Consensus       154 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l  215 (229)
                      ++|++|++++|+++...+..|..+++|++|++++|+++. ++...|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999999997666789999999999999999997 7766899999999999999975

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.06  E-value=8.2e-11  Score=105.73  Aligned_cols=97  Identities=29%  Similarity=0.302  Sum_probs=73.2

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      +..+.+..++.|+.||||.|.|+.+.-.    .|..-.++++|+|++|+|+..-...|.++.+|..|.|+.|+++. +|.
T Consensus       140 v~se~L~~l~alrslDLSrN~is~i~~~----sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~  214 (873)
T KOG4194|consen  140 VTSEELSALPALRSLDLSRNLISEIPKP----SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQ  214 (873)
T ss_pred             ccHHHHHhHhhhhhhhhhhchhhcccCC----CCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCH
Confidence            4455667777888888888888875444    66666678888888888876666777777888888888888877 777


Q ss_pred             hhcCCCCCCCEEeccCCcCCCC
Q 027045          197 QGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      ..|.++++|+.|+|..|+|.-.
T Consensus       215 r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  215 RSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             HHhhhcchhhhhhccccceeee
Confidence            6777788888888888877655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.95  E-value=9.5e-11  Score=90.95  Aligned_cols=90  Identities=26%  Similarity=0.338  Sum_probs=81.4

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      .+-.+.+++.|.||+|+++-. |+    .+..+.+|+.|++++|+++ .+|..++++++|+.|+++-|++.- +|. .|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~v-pp----nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lpr-gfg   99 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVV-PP----NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPR-GFG   99 (264)
T ss_pred             cccchhhhhhhhcccCceeec-CC----cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-Ccc-ccC
Confidence            345667889999999999984 55    8999999999999999999 789999999999999999999987 887 899


Q ss_pred             CCCCCCEEeccCCcCCCC
Q 027045          201 NLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~  218 (229)
                      .++.|++|||.+|++...
T Consensus       100 s~p~levldltynnl~e~  117 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNEN  117 (264)
T ss_pred             CCchhhhhhccccccccc
Confidence            999999999999998765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=7.8e-10  Score=87.06  Aligned_cols=94  Identities=36%  Similarity=0.456  Sum_probs=34.7

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccC-CCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc-
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFG-SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL-  199 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~-  199 (229)
                      +.+..++++|+|.+|.|+.+ .     .++ .+.+|+.|++++|.++. ++ .+..+++|+.|++++|+++. +.. .+ 
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I-e-----~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~-~l~   84 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI-E-----NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISE-GLD   84 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CH-HHH
T ss_pred             cccccccccccccccccccc-c-----chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-ccc-chH
Confidence            44556789999999999984 3     455 58899999999999993 43 57889999999999999998 764 34 


Q ss_pred             CCCCCCCEEeccCCcCCCCCCcccCC
Q 027045          200 ANLRYLQVLDLSGNFNITSGSLTRLG  225 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~~~~~~l~  225 (229)
                      ..+++|++|++++|+|..+.++..|.
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L~  110 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPLS  110 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGGG
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHHH
Confidence            46899999999999999886655443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.86  E-value=1.9e-10  Score=99.02  Aligned_cols=111  Identities=27%  Similarity=0.310  Sum_probs=89.9

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCC-CCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGD-NFFNDS  169 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~~~  169 (229)
                      ...++|+|.. +|+.           +++.+|..+++|+.||||+|+|+.+.|+    .|.+++.|..|-+-+ |+|+..
T Consensus        67 ~~tveirLdqN~I~~-----------iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   67 PETVEIRLDQNQISS-----------IPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             CcceEEEeccCCccc-----------CChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhh
Confidence            4577888887 6654           7788899999999999999999999998    999998887776655 899965


Q ss_pred             CcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          170 ILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       170 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      .-..|+++.+|+-|.+.-|++.- ++.+.|..+++|..|.+-.|.+..+
T Consensus       132 ~k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i  179 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSI  179 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhh
Confidence            55678888888888888888876 6666788888888888888877666

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.82  E-value=9.8e-10  Score=95.08  Aligned_cols=92  Identities=30%  Similarity=0.353  Sum_probs=68.6

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCC-----------------------CCCcccccC
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN-----------------------DSILPYLNT  176 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~-----------------------~~~p~~l~~  176 (229)
                      ..++.+++|..|++++|-+.. +|.    +++.+..||.|+++.|+|.                       ...|+.+++
T Consensus       429 ~~l~~l~kLt~L~L~NN~Ln~-LP~----e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n  503 (565)
T KOG0472|consen  429 LELSQLQKLTFLDLSNNLLND-LPE----EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN  503 (565)
T ss_pred             HHHHhhhcceeeecccchhhh-cch----hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence            445556666666666666665 455    5666666666666666554                       334445788


Q ss_pred             CCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       177 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +.+|..|||.+|.+.. +|+ .++++.+|++|++.+|+|...
T Consensus       504 m~nL~tLDL~nNdlq~-IPp-~LgnmtnL~hLeL~gNpfr~P  543 (565)
T KOG0472|consen  504 MRNLTTLDLQNNDLQQ-IPP-ILGNMTNLRHLELDGNPFRQP  543 (565)
T ss_pred             hhhcceeccCCCchhh-CCh-hhccccceeEEEecCCccCCC
Confidence            9999999999999998 998 899999999999999999854

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.79  E-value=6e-10  Score=96.04  Aligned_cols=103  Identities=27%  Similarity=0.294  Sum_probs=91.7

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      ...|..+++|+.|+|++|+|+++-+.    .|.+...+++|.|..|++...--..|.++..|+.|+|++|+|+..-|. .
T Consensus       267 ~~cf~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-a  341 (498)
T KOG4237|consen  267 AKCFKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-A  341 (498)
T ss_pred             HHHHhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-c
Confidence            34589999999999999999998888    999999999999999999866667889999999999999999984554 8


Q ss_pred             cCCCCCCCEEeccCCcCCCCCCcccCCC
Q 027045          199 LANLRYLQVLDLSGNFNITSGSLTRLGR  226 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~~~~~~l~~  226 (229)
                      |..+.+|..|.|-.|.+..-+.+.+|+.
T Consensus       342 F~~~~~l~~l~l~~Np~~CnC~l~wl~~  369 (498)
T KOG4237|consen  342 FQTLFSLSTLNLLSNPFNCNCRLAWLGE  369 (498)
T ss_pred             ccccceeeeeehccCcccCccchHHHHH
Confidence            9999999999999999988777766654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=9e-10  Score=92.32  Aligned_cols=93  Identities=31%  Similarity=0.419  Sum_probs=50.4

Q ss_pred             CCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCC
Q 027045          125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY  204 (229)
Q Consensus       125 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~  204 (229)
                      +|.++.|++|+|.|..+  +    .+..+++|+.||||+|.++ .+...-..+.+.+.|.|+.|.+.. +.  .++++.+
T Consensus       306 ~Pkir~L~lS~N~i~~v--~----nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-LS--GL~KLYS  375 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTV--Q----NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-LS--GLRKLYS  375 (490)
T ss_pred             ccceeEEeccccceeee--h----hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-hh--hhHhhhh
Confidence            34555555555555442  1    3445555555555555554 233322334445555555555543 32  3666777


Q ss_pred             CCEEeccCCcCCCCCCcccCCCC
Q 027045          205 LQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       205 L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      |.+||+++|+|..+..+..+++|
T Consensus       376 LvnLDl~~N~Ie~ldeV~~IG~L  398 (490)
T KOG1259|consen  376 LVNLDLSSNQIEELDEVNHIGNL  398 (490)
T ss_pred             heeccccccchhhHHHhcccccc
Confidence            77788888877777555555543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.66  E-value=4.1e-08  Score=59.15  Aligned_cols=40  Identities=40%  Similarity=0.745  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCceec
Q 027045           38 ETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMS--SDCCDDWEGVKCN   88 (229)
Q Consensus        38 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~--~~~C~~w~gv~C~   88 (229)
                      +.|+++|++||+++.+   ++.+  .+.+|+.     .  .+|| +|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~---~~~~--~l~~W~~-----~~~~~~C-~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNN---DPSG--VLSSWNP-----SSDSDPC-SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT----SC-C--CCTT--T-----T--S-CC-CSTTEEE-
T ss_pred             cHHHHHHHHHHHhccc---ccCc--ccccCCC-----cCCCCCe-eeccEEeC
Confidence            5799999999999972   3444  7999998     4  7999 99999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.64  E-value=6.7e-07  Score=85.03  Aligned_cols=43  Identities=19%  Similarity=0.157  Sum_probs=30.9

Q ss_pred             HHhhcCCCCCHHHHHHHHHHHhhccccCCCCC-CCCCCCCCCCCCCCCCCCCC
Q 027045           28 NEIHGYKACLETERTALLEIKSFFISVSDIGY-DDKILPSWVGEDDGMSSDCC   79 (229)
Q Consensus        28 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~-~~~~~~~W~~~~~~~~~~~C   79 (229)
                      -..++.+...++|.+.++++.+.+.    +|. ......+|.+     .+++|
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~l~----~p~~~~~~~~~~~~-----~~~fc   95 (754)
T PRK15370         52 YLCHPPETASPEEIKSKFECLRMLA----FPAYADNIQYSRGG-----ADQYC   95 (754)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHhc----CCchhhccccccCC-----CCccc
Confidence            3456678888999999999999997    332 1113344988     67888

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.63  E-value=5.5e-09  Score=98.19  Aligned_cols=111  Identities=27%  Similarity=0.287  Sum_probs=84.9

Q ss_pred             CCCceecCCCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEE
Q 027045           82 WEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLN  160 (229)
Q Consensus        82 w~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~  160 (229)
                      |+-..|   ..++..|+|+. .+..           ++...+.+++.|+.|+||+|.++. +|+    .+..++.|++|.
T Consensus       376 ~p~l~~---~~hLKVLhLsyNrL~~-----------fpas~~~kle~LeeL~LSGNkL~~-Lp~----tva~~~~L~tL~  436 (1081)
T KOG0618|consen  376 FPVLVN---FKHLKVLHLSYNRLNS-----------FPASKLRKLEELEELNLSGNKLTT-LPD----TVANLGRLHTLR  436 (1081)
T ss_pred             hhhhcc---ccceeeeeeccccccc-----------CCHHHHhchHHhHHHhcccchhhh-hhH----HHHhhhhhHHHh
Confidence            444444   34677788888 5543           556678888899999999999988 667    888899999999


Q ss_pred             cCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCc
Q 027045          161 LGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF  214 (229)
Q Consensus       161 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~  214 (229)
                      ..+|++. ..| .+..++.|+.+|++.|+++...-. .....++|++||+++|.
T Consensus       437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~-~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP-EALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hcCCcee-ech-hhhhcCcceEEecccchhhhhhhh-hhCCCcccceeeccCCc
Confidence            9999988 577 688899999999999999863222 22233789999999996

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.61  E-value=2.1e-09  Score=93.03  Aligned_cols=109  Identities=26%  Similarity=0.292  Sum_probs=84.7

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCC-CcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEE-LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      -|+.++++. ++.. +|..           +..++. .+.+.+++|.++. +|.    .++.+++|..|++++|.+. .+
T Consensus       389 ~Vt~VnfskNqL~e-lPk~-----------L~~lkelvT~l~lsnn~isf-v~~----~l~~l~kLt~L~L~NN~Ln-~L  450 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCE-LPKR-----------LVELKELVTDLVLSNNKISF-VPL----ELSQLQKLTFLDLSNNLLN-DL  450 (565)
T ss_pred             ceEEEecccchHhh-hhhh-----------hHHHHHHHHHHHhhcCcccc-chH----HHHhhhcceeeecccchhh-hc
Confidence            489999999 6653 3322           222222 3445777777776 677    8999999999999999998 79


Q ss_pred             cccccCCCCccEEeccCCcCCC----------------------CCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEG----------------------SRTKQGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~----------------------~ip~~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      |..++.+..|+.|+++.|+|..                      .++...+.++.+|..|||.+|.+..++
T Consensus       451 P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IP  521 (565)
T KOG0472|consen  451 PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIP  521 (565)
T ss_pred             chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCC
Confidence            9999999999999999998854                      244435888999999999999998874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.60  E-value=5.5e-09  Score=95.05  Aligned_cols=88  Identities=30%  Similarity=0.271  Sum_probs=59.0

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcc-cccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      +-.+..|+.||||+|++.. .|.    .+..-+++-.|+||+|+|. .+|. -|-++..|-+||||+|++.. +|+ .+.
T Consensus        99 iF~l~dLt~lDLShNqL~E-vP~----~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPP-Q~R  170 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSHNQLRE-VPT----NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPP-QIR  170 (1255)
T ss_pred             hcccccceeeecchhhhhh-cch----hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCH-HHH
Confidence            4456677777777777776 555    6666667777777777776 4554 34566777777777777766 666 566


Q ss_pred             CCCCCCEEeccCCcCCC
Q 027045          201 NLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~  217 (229)
                      .+..|+.|+|++|++.-
T Consensus       171 RL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  171 RLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             HHhhhhhhhcCCChhhH
Confidence            77777777777776543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.58  E-value=4.7e-09  Score=95.49  Aligned_cols=91  Identities=23%  Similarity=0.219  Sum_probs=61.9

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      .+..+.+|+.+|+|.|++.. .|+    .+-.+++|+.|+||+|.++ .+--..+...+|++|++|.|+++. +|. .+.
T Consensus       217 sld~l~NL~dvDlS~N~Lp~-vPe----cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP~-avc  288 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLSENNLPI-VPE----CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LPD-AVC  288 (1255)
T ss_pred             chhhhhhhhhccccccCCCc-chH----HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc-chH-HHh
Confidence            34455667777777777776 566    6777777777777777776 344444555677777777777776 776 677


Q ss_pred             CCCCCCEEeccCCcCCCCC
Q 027045          201 NLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~~  219 (229)
                      ++++|+.|++.+|+++-.+
T Consensus       289 KL~kL~kLy~n~NkL~FeG  307 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEG  307 (1255)
T ss_pred             hhHHHHHHHhccCcccccC
Confidence            7777777777777665443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.51  E-value=2.8e-07  Score=87.60  Aligned_cols=78  Identities=22%  Similarity=0.219  Sum_probs=55.9

Q ss_pred             CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC
Q 027045          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (229)
Q Consensus       127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~  206 (229)
                      +|+.|++++|+|++ +|.    .   .++|+.|++++|+++. +|..   ..+|+.|++++|+++. +|. .+.++++|+
T Consensus       383 ~L~~LdLs~N~Lt~-LP~----l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~-sl~~L~~L~  448 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPV----L---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPE-SLIHLSSET  448 (788)
T ss_pred             ccceEEecCCcccC-CCC----c---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cCh-HHhhccCCC
Confidence            45666666666665 332    2   2467777777777773 5543   2467788888888886 887 788999999


Q ss_pred             EEeccCCcCCCC
Q 027045          207 VLDLSGNFNITS  218 (229)
Q Consensus       207 ~L~L~~N~l~~~  218 (229)
                      .|++++|+|++.
T Consensus       449 ~LdLs~N~Ls~~  460 (788)
T PRK15387        449 TVNLEGNPLSER  460 (788)
T ss_pred             eEECCCCCCCch
Confidence            999999999875

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.47  E-value=2.1e-08  Score=84.22  Aligned_cols=96  Identities=29%  Similarity=0.297  Sum_probs=78.5

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~  201 (229)
                      ......|+.+|||+|.|+.+ ..    +..-.|.++.|++|+|.+..  -+.+..+++|+.||||+|.++. +.. +-.+
T Consensus       280 ~dTWq~LtelDLS~N~I~~i-DE----SvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~-~~G-wh~K  350 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQI-DE----SVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAE-CVG-WHLK  350 (490)
T ss_pred             cchHhhhhhccccccchhhh-hh----hhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHh-hhh-hHhh
Confidence            34456799999999999984 44    67778999999999999982  3448899999999999999987 654 6678


Q ss_pred             CCCCCEEeccCCcCCCCCCcccCCC
Q 027045          202 LRYLQVLDLSGNFNITSGSLTRLGR  226 (229)
Q Consensus       202 l~~L~~L~L~~N~l~~~~~~~~l~~  226 (229)
                      +.+++.|.|+.|.+.....+.+|-+
T Consensus       351 LGNIKtL~La~N~iE~LSGL~KLYS  375 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIETLSGLRKLYS  375 (490)
T ss_pred             hcCEeeeehhhhhHhhhhhhHhhhh
Confidence            9999999999999887665555443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.45  E-value=1.7e-08  Score=94.93  Aligned_cols=90  Identities=29%  Similarity=0.316  Sum_probs=76.3

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      .+.++++|+.|+|++|++......    .+.++..|+.|+||+|+++ .+|..+..+..|++|...+|++.. +|  .+.
T Consensus       378 ~l~~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP--e~~  449 (1081)
T KOG0618|consen  378 VLVNFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP--ELA  449 (1081)
T ss_pred             hhccccceeeeeecccccccCCHH----HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch--hhh
Confidence            466788899999999998874444    6788888999999999998 688888888999999999999886 77  488


Q ss_pred             CCCCCCEEeccCCcCCCC
Q 027045          201 NLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~  218 (229)
                      .++.|+.+|++.|+++..
T Consensus       450 ~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             hcCcceEEecccchhhhh
Confidence            999999999999998876

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.42  E-value=2.5e-07  Score=55.97  Aligned_cols=38  Identities=37%  Similarity=0.357  Sum_probs=21.8

Q ss_pred             CccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       179 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +|++|++++|+|+. +|. .++++++|++|++++|+++.+
T Consensus         2 ~L~~L~l~~N~i~~-l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SS-HGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcc-cCc-hHhCCCCCCEEEecCCCCCCC
Confidence            45666666666664 554 466666666666666666543

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.41  E-value=9.2e-07  Score=84.13  Aligned_cols=79  Identities=20%  Similarity=0.185  Sum_probs=42.8

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  205 (229)
                      ++|+.|++++|+++. +|.    .+.  .+|+.|++++|.++ .+|..+.  .+|+.|++++|+++. +|. .+.  ++|
T Consensus       220 ~nL~~L~Ls~N~Lts-LP~----~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~-~l~--~sL  285 (754)
T PRK15370        220 GNIKTLYANSNQLTS-IPA----TLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPE-NLP--EEL  285 (754)
T ss_pred             cCCCEEECCCCcccc-CCh----hhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccc-ccC--CCC
Confidence            356666777666665 343    322  34566666666655 3444432  356666666666654 554 232  356


Q ss_pred             CEEeccCCcCCCC
Q 027045          206 QVLDLSGNFNITS  218 (229)
Q Consensus       206 ~~L~L~~N~l~~~  218 (229)
                      ++|++++|+|++.
T Consensus       286 ~~L~Ls~N~Lt~L  298 (754)
T PRK15370        286 RYLSVYDNSIRTL  298 (754)
T ss_pred             cEEECCCCccccC
Confidence            6666666655543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.30  E-value=1.8e-06  Score=82.11  Aligned_cols=86  Identities=26%  Similarity=0.167  Sum_probs=47.8

Q ss_pred             CCCcEEeCCCCcCCCccccccccccC-----------------CCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFG-----------------SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN  188 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~-----------------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  188 (229)
                      ++|++|++++|+|+. +|.    .+.                 .+..|+.|++++|+++ .+|.   .+++|+.|++++|
T Consensus       242 ~~Lk~LdLs~N~Lts-LP~----lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N  312 (788)
T PRK15387        242 PELRTLEVSGNQLTS-LPV----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDN  312 (788)
T ss_pred             CCCcEEEecCCccCc-ccC----cccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCC
Confidence            567777777777775 332    110                 1134555566666665 3443   2356788888888


Q ss_pred             cCCCCCChhhcCC-------------C----CCCCEEeccCCcCCCCCCcc
Q 027045          189 SIEGSRTKQGLAN-------------L----RYLQVLDLSGNFNITSGSLT  222 (229)
Q Consensus       189 ~l~~~ip~~~~~~-------------l----~~L~~L~L~~N~l~~~~~~~  222 (229)
                      ++++ +|. ....             +    .+|++|++++|+|++++.++
T Consensus       313 ~L~~-Lp~-lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp  361 (788)
T PRK15387        313 QLAS-LPA-LPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLP  361 (788)
T ss_pred             cccc-CCC-CcccccccccccCccccccccccccceEecCCCccCCCCCCC
Confidence            8776 543 1111             1    25666667666666655443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.27  E-value=2.7e-07  Score=78.72  Aligned_cols=91  Identities=27%  Similarity=0.323  Sum_probs=43.0

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCC----CChh
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGS----RTKQ  197 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~  197 (229)
                      ++|+.|++++|.+++.........+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    +.. 
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-  215 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE-  215 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH-
Confidence            55666666666665321110001344445566666666655531    222233444566666666555431    111 


Q ss_pred             hcCCCCCCCEEeccCCcCCC
Q 027045          198 GLANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       198 ~~~~l~~L~~L~L~~N~l~~  217 (229)
                      .+..+++|++|++++|.+++
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HhcccCCCCEEecCCCcCch
Confidence            23445556666666555553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.27  E-value=2.2e-07  Score=79.21  Aligned_cols=116  Identities=23%  Similarity=0.244  Sum_probs=80.3

Q ss_pred             CCcEEEEecCC-CccccccCCCCCccccCCcccCCC---CCCcEEeCCCCcCCCccccccccccCCC-CCCcEEEcCCCC
Q 027045           91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPF---EELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNF  165 (229)
Q Consensus        91 ~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~~~~~l-~~L~~L~Ls~N~  165 (229)
                      ..+++.|++++ .+.+..           ...+..+   ++|++|++++|++++.........+..+ ++|+.|++++|.
T Consensus        80 ~~~L~~L~l~~~~~~~~~-----------~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116          80 GCGLQELDLSDNALGPDG-----------CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             cCceeEEEccCCCCChhH-----------HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence            34789999988 665411           1122222   5599999999999842111000145566 899999999999


Q ss_pred             CCCC----CcccccCCCCccEEeccCCcCCCC----CChhhcCCCCCCCEEeccCCcCCCC
Q 027045          166 FNDS----ILPYLNTLTSLTTLILSDNSIEGS----RTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       166 l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +++.    ++..+..+.+|++|++++|.+++.    ++. .+..+++|++|++++|.+++.
T Consensus       149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         149 LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH-HHHhCCCCCEEeccCCccChH
Confidence            9853    233466778999999999999842    222 355667999999999998754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.27  E-value=4.8e-06  Score=83.21  Aligned_cols=88  Identities=19%  Similarity=0.198  Sum_probs=57.4

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      .+.++++|+.|++++|..-+.+|.    .+ .+++|+.|++++|..-..+|..   ..+|+.|+|++|.++. +|. .+.
T Consensus       797 si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~-si~  866 (1153)
T PLN03210        797 SIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPW-WIE  866 (1153)
T ss_pred             hhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChH-HHh
Confidence            466777777787777654444564    33 5677777777765433334432   2567777888887776 776 677


Q ss_pred             CCCCCCEEeccC-CcCCCC
Q 027045          201 NLRYLQVLDLSG-NFNITS  218 (229)
Q Consensus       201 ~l~~L~~L~L~~-N~l~~~  218 (229)
                      .+++|+.|++++ |++..+
T Consensus       867 ~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        867 KFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcc
Confidence            788888888877 455554

syringae 6; Provisional

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.25  E-value=9.3e-07  Score=53.47  Aligned_cols=36  Identities=39%  Similarity=0.557  Sum_probs=15.6

Q ss_pred             CCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCC
Q 027045          155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIE  191 (229)
Q Consensus       155 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  191 (229)
                      +|++|++++|+++ .+|+.++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444444

...

>PLN03210 Resistant to P

Probab=98.22  E-value=7.4e-06  Score=81.89  Aligned_cols=87  Identities=21%  Similarity=0.033  Sum_probs=38.2

Q ss_pred             CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  202 (229)
                      ..+++|+.|++++|..-..+|.    .+..+++|+.|++++|..-..+|..+ ++++|+.|++++|...+.+|.    ..
T Consensus       654 s~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~  724 (1153)
T PLN03210        654 SMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----IS  724 (1153)
T ss_pred             ccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----cc
Confidence            3344445555544433333444    44445555555555433222344332 344455555544433222332    12


Q ss_pred             CCCCEEeccCCcCCCC
Q 027045          203 RYLQVLDLSGNFNITS  218 (229)
Q Consensus       203 ~~L~~L~L~~N~l~~~  218 (229)
                      .+|+.|++++|.+...
T Consensus       725 ~nL~~L~L~~n~i~~l  740 (1153)
T PLN03210        725 TNISWLDLDETAIEEF  740 (1153)
T ss_pred             CCcCeeecCCCccccc
Confidence            3455555555555443

syringae 6; Provisional

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.13  E-value=9.8e-08  Score=88.17  Aligned_cols=95  Identities=28%  Similarity=0.332  Sum_probs=75.5

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc-ccCCCCccEEeccCCcCCCCCChhhc
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      .+.-++.++.|||+.|+++...      .+..+++|++|||++|.++ .+|.- ...+ .|+.|++++|.++. +-  .+
T Consensus       182 SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t-L~--gi  250 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT-LR--GI  250 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh-hh--hH
Confidence            3455788999999999999853      6788999999999999998 56652 2233 49999999999987 43  58


Q ss_pred             CCCCCCCEEeccCCcCCCCCCcccCCC
Q 027045          200 ANLRYLQVLDLSGNFNITSGSLTRLGR  226 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~~~~~~l~~  226 (229)
                      .++.+|+.||+++|-|.+..++..|+.
T Consensus       251 e~LksL~~LDlsyNll~~hseL~pLws  277 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEHSELEPLWS  277 (1096)
T ss_pred             HhhhhhhccchhHhhhhcchhhhHHHH
Confidence            899999999999999988766555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.05  E-value=2.4e-06  Score=75.44  Aligned_cols=79  Identities=33%  Similarity=0.399  Sum_probs=32.5

Q ss_pred             CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC
Q 027045          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (229)
Q Consensus       127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~  206 (229)
                      +|+.|++++|++.. +|.    .+..++.|+.|++++|+++ .+|...+.+++|+.|++++|+++. +|. ..+....|+
T Consensus       141 nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~-~~~~~~~L~  212 (394)
T COG4886         141 NLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPP-EIELLSALE  212 (394)
T ss_pred             hcccccccccchhh-hhh----hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-Cch-hhhhhhhhh
Confidence            44444444444444 222    3344444444444444444 233333334444444444444443 433 222333344


Q ss_pred             EEeccCC
Q 027045          207 VLDLSGN  213 (229)
Q Consensus       207 ~L~L~~N  213 (229)
                      .+.+++|
T Consensus       213 ~l~~~~N  219 (394)
T COG4886         213 ELDLSNN  219 (394)
T ss_pred             hhhhcCC
Confidence            4444444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.05  E-value=1.5e-06  Score=77.52  Aligned_cols=89  Identities=35%  Similarity=0.370  Sum_probs=59.1

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~  201 (229)
                      +..+++|+.|++.+|+|.++..     .+..+++|++|++++|.|+..  ..+..++.|+.|++++|.++. +.  .+..
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~~--~~~~  160 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-IS--GLES  160 (414)
T ss_pred             cccccceeeeeccccchhhccc-----chhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-cc--CCcc
Confidence            5566777777777777777432     256677777777777777632  224556667777777777776 54  3556


Q ss_pred             CCCCCEEeccCCcCCCCCC
Q 027045          202 LRYLQVLDLSGNFNITSGS  220 (229)
Q Consensus       202 l~~L~~L~L~~N~l~~~~~  220 (229)
                      +.+|+.+++++|.+..+..
T Consensus       161 l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             chhhhcccCCcchhhhhhh
Confidence            7777777777777766544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.03  E-value=4.4e-07  Score=68.15  Aligned_cols=66  Identities=21%  Similarity=0.215  Sum_probs=36.4

Q ss_pred             CCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       124 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      .++.++.|++++|.|+. +|.    ++..++.|+.|+++.|.+. ..|..+..+.++..|+..+|.+.. +|.
T Consensus        75 kf~t~t~lNl~~neisd-vPe----E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~  140 (177)
T KOG4579|consen   75 KFPTATTLNLANNEISD-VPE----ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDV  140 (177)
T ss_pred             ccchhhhhhcchhhhhh-chH----HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcH
Confidence            34455555666666655 444    5555556666666666555 445544445555555555555543 544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.99  E-value=3.7e-06  Score=74.26  Aligned_cols=92  Identities=38%  Similarity=0.381  Sum_probs=78.4

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCC-CCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK-QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      .+..++.++.|++.+|+++.+ ++    ....+. +|+.|++++|.+. .+|..++.+++|+.|++++|+++. +|. ..
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i-~~----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~-~~  182 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDI-PP----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPK-LL  182 (394)
T ss_pred             hhhcccceeEEecCCcccccC-cc----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhh-hh
Confidence            345567899999999999995 44    566664 9999999999998 677778999999999999999998 876 45


Q ss_pred             CCCCCCCEEeccCCcCCCCCC
Q 027045          200 ANLRYLQVLDLSGNFNITSGS  220 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~~~  220 (229)
                      ...++|+.|++++|+++.++.
T Consensus       183 ~~~~~L~~L~ls~N~i~~l~~  203 (394)
T COG4886         183 SNLSNLNNLDLSGNKISDLPP  203 (394)
T ss_pred             hhhhhhhheeccCCccccCch
Confidence            588999999999999998854

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.93  E-value=1.4e-05  Score=63.80  Aligned_cols=89  Identities=27%  Similarity=0.215  Sum_probs=47.4

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC-CcccccCCCCccEEeccCCcCCCCC--Ch
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS-ILPYLNTLTSLTTLILSDNSIEGSR--TK  196 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~i--p~  196 (229)
                      ..|..++.|..|.+++|+|+.+.|.    --..+++|+.|.|.+|.+... .-..+..+++|++|.+-+|..+..-  -.
T Consensus        58 ~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~  133 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL  133 (233)
T ss_pred             ccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee
Confidence            3455666666666666666665553    223345566666666665421 1123455666666666666655310  01


Q ss_pred             hhcCCCCCCCEEeccC
Q 027045          197 QGLANLRYLQVLDLSG  212 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~  212 (229)
                      ..+..+++|+.||.++
T Consensus       134 yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  134 YVLYKLPSLRTLDFQK  149 (233)
T ss_pred             EEEEecCcceEeehhh
Confidence            1345566666666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=2.4e-06  Score=74.97  Aligned_cols=98  Identities=28%  Similarity=0.231  Sum_probs=68.9

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc--ccccCCCCccEEeccCCcCCCC-CChh-
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL--PYLNTLTSLTTLILSDNSIEGS-RTKQ-  197 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~-ip~~-  197 (229)
                      ...+|.|+.|+|..|..-.....    ....+..|+.|||++|.+-. .+  ...+.++.|..|+++.+.+... +|+. 
T Consensus       218 ~~~fPsl~~L~L~~N~~~~~~~~----~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~  292 (505)
T KOG3207|consen  218 LLTFPSLEVLYLEANEIILIKAT----STKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE  292 (505)
T ss_pred             HHhCCcHHHhhhhcccccceecc----hhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCcc
Confidence            44678888888888864333333    45567789999999988763 33  4567888888899988888751 2221 


Q ss_pred             ---hcCCCCCCCEEeccCCcCCCCCCcccC
Q 027045          198 ---GLANLRYLQVLDLSGNFNITSGSLTRL  224 (229)
Q Consensus       198 ---~~~~l~~L~~L~L~~N~l~~~~~~~~l  224 (229)
                         ....+++|++|++..|++..+..+.++
T Consensus       293 s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l  322 (505)
T KOG3207|consen  293 SLDKTHTFPKLEYLNISENNIRDWRSLNHL  322 (505)
T ss_pred             chhhhcccccceeeecccCccccccccchh
Confidence               124678899999999999887655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.87  E-value=1.6e-06  Score=78.28  Aligned_cols=89  Identities=27%  Similarity=0.286  Sum_probs=73.7

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      .++.+..|..||.+.|.+.. +|.    .++.+.+|+.|.+..|++. .+|+.+..+ .|..||++.|+++. ||. .|.
T Consensus       161 ~ig~~~tl~~ld~s~nei~s-lps----ql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~-iPv-~fr  231 (722)
T KOG0532|consen  161 EIGLLPTLAHLDVSKNEIQS-LPS----QLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISY-LPV-DFR  231 (722)
T ss_pred             ccccchhHHHhhhhhhhhhh-chH----HhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceee-cch-hhh
Confidence            45566778888888888877 454    7888888888888888887 577777744 58889999999998 998 899


Q ss_pred             CCCCCCEEeccCCcCCCC
Q 027045          201 NLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~  218 (229)
                      +|+.|++|-|.+|.+...
T Consensus       232 ~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhhheeeeeccCCCCCC
Confidence            999999999999999876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.84  E-value=6.8e-06  Score=79.54  Aligned_cols=89  Identities=29%  Similarity=0.303  Sum_probs=71.1

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..|..++.|+.|||++|.=-+.+|.    .++.+-+|++|+++...++ .+|..++++.+|.+|++..+.-...+|. ..
T Consensus       565 ~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~  638 (889)
T KOG4658|consen  565 EFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-IL  638 (889)
T ss_pred             HHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hh
Confidence            3478889999999998776666887    8888999999999998888 7888899999999999887775543554 56


Q ss_pred             CCCCCCCEEeccCCc
Q 027045          200 ANLRYLQVLDLSGNF  214 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~  214 (229)
                      ..+.+|++|.+..-.
T Consensus       639 ~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  639 LELQSLRVLRLPRSA  653 (889)
T ss_pred             hhcccccEEEeeccc
Confidence            668889988886654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.84  E-value=5.2e-06  Score=74.14  Aligned_cols=96  Identities=35%  Similarity=0.444  Sum_probs=79.0

Q ss_pred             CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  202 (229)
                      ..+..++.+++..|.+.... .    .+..+++|+.|++.+|.+.. +...+..+++|++|++++|+|+. +.  .+..+
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~-~----~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~-i~--~l~~l  139 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKIL-N----HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK-LE--GLSTL  139 (414)
T ss_pred             HHhHhHHhhccchhhhhhhh-c----ccccccceeeeeccccchhh-cccchhhhhcchheecccccccc-cc--chhhc
Confidence            35677888889999998733 2    58889999999999999983 44447889999999999999998 64  47788


Q ss_pred             CCCCEEeccCCcCCCCCCcccCCCC
Q 027045          203 RYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       203 ~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      +.|+.|++.+|.++.+..+..+.+|
T Consensus       140 ~~L~~L~l~~N~i~~~~~~~~l~~L  164 (414)
T KOG0531|consen  140 TLLKELNLSGNLISDISGLESLKSL  164 (414)
T ss_pred             cchhhheeccCcchhccCCccchhh
Confidence            8899999999999998777655544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.80  E-value=4.8e-07  Score=83.75  Aligned_cols=106  Identities=28%  Similarity=0.268  Sum_probs=79.4

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  171 (229)
                      .+..|+|+. ++..             ...+..+++|++|||++|++.. +|..   ...++. |+.|.+++|.++.  -
T Consensus       188 ale~LnLshNk~~~-------------v~~Lr~l~~LkhLDlsyN~L~~-vp~l---~~~gc~-L~~L~lrnN~l~t--L  247 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTK-------------VDNLRRLPKLKHLDLSYNCLRH-VPQL---SMVGCK-LQLLNLRNNALTT--L  247 (1096)
T ss_pred             Hhhhhccchhhhhh-------------hHHHHhcccccccccccchhcc-cccc---chhhhh-heeeeecccHHHh--h
Confidence            355666766 5543             3367889999999999999998 4530   334454 9999999999983  3


Q ss_pred             ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      ..+.++.+|+.||+++|-+.+.---..++.+..|+.|+|.+|++..-
T Consensus       248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            45778999999999999998732222466788899999999987653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.78  E-value=1.5e-06  Score=78.59  Aligned_cols=96  Identities=26%  Similarity=0.291  Sum_probs=53.3

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCC--------
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG--------  192 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--------  192 (229)
                      .+.++..|++|||+.|+++. .|.    .+..|+ |+.|-+++|+++ .+|+.++.+..|..||.+.|++..        
T Consensus       116 ~i~~L~~lt~l~ls~NqlS~-lp~----~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l  188 (722)
T KOG0532|consen  116 AICNLEALTFLDLSSNQLSH-LPD----GLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL  188 (722)
T ss_pred             hhhhhhHHHHhhhccchhhc-CCh----hhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence            45566667777777777766 344    455454 555555666555 455555555555555555555544        


Q ss_pred             --------------CCChhhcCCCCCCCEEeccCCcCCCCC-CcccCC
Q 027045          193 --------------SRTKQGLANLRYLQVLDLSGNFNITSG-SLTRLG  225 (229)
Q Consensus       193 --------------~ip~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~  225 (229)
                                    .+|. .+..+ .|..||++.|+++.++ .|.++.
T Consensus       189 ~slr~l~vrRn~l~~lp~-El~~L-pLi~lDfScNkis~iPv~fr~m~  234 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLEDLPE-ELCSL-PLIRLDFSCNKISYLPVDFRKMR  234 (722)
T ss_pred             HHHHHHHHhhhhhhhCCH-HHhCC-ceeeeecccCceeecchhhhhhh
Confidence                          0444 34422 3566777777777663 344433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.73  E-value=4.5e-05  Score=60.89  Aligned_cols=87  Identities=28%  Similarity=0.290  Sum_probs=70.7

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  205 (229)
                      .+...+||++|.+... +     .|..++.|.+|.+++|+|+...|.--.-+++|..|.|.+|+|...-.-..+..+++|
T Consensus        42 d~~d~iDLtdNdl~~l-~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL-D-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             cccceecccccchhhc-c-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            3567899999999873 3     688899999999999999966666445568899999999999852222247789999


Q ss_pred             CEEeccCCcCCCC
Q 027045          206 QVLDLSGNFNITS  218 (229)
Q Consensus       206 ~~L~L~~N~l~~~  218 (229)
                      ++|.+-+|+++..
T Consensus       116 ~~Ltll~Npv~~k  128 (233)
T KOG1644|consen  116 EYLTLLGNPVEHK  128 (233)
T ss_pred             ceeeecCCchhcc
Confidence            9999999998776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.69  E-value=2.5e-06  Score=64.15  Aligned_cols=89  Identities=24%  Similarity=0.289  Sum_probs=75.5

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccC-CCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFG-SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      +....+|+..+|++|.+... |.    .|. .++..+.+++++|.++ .+|..+..++.|+.|+++.|.+.. .|. .+.
T Consensus        49 l~~~~el~~i~ls~N~fk~f-p~----kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~-vi~  120 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKF-PK----KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPR-VIA  120 (177)
T ss_pred             HhCCceEEEEecccchhhhC-CH----HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chH-HHH
Confidence            44567888899999999984 44    454 5568999999999999 689889999999999999999997 776 677


Q ss_pred             CCCCCCEEeccCCcCCCC
Q 027045          201 NLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~  218 (229)
                      .+.++..|+..+|.+..+
T Consensus       121 ~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  121 PLIKLDMLDSPENARAEI  138 (177)
T ss_pred             HHHhHHHhcCCCCccccC
Confidence            799999999999987766

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=5.2e-06  Score=72.87  Aligned_cols=95  Identities=27%  Similarity=0.219  Sum_probs=45.9

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcc-cccCCCCccEEeccCCcCCCCCChhh
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      .....|++|+.|+++.|++.-.....   .-..+++|+.|.++.+.++...-. .+..+++|+.|+|..|.... +-...
T Consensus       166 ~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~  241 (505)
T KOG3207|consen  166 KIAEQLPSLENLNLSSNRLSNFISSN---TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATS  241 (505)
T ss_pred             HHHHhcccchhcccccccccCCcccc---chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecch
Confidence            34567788888888888876533320   112345566666666665532211 12234555555555553211 11112


Q ss_pred             cCCCCCCCEEeccCCcCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~  218 (229)
                      ...+..|+.|||++|++-..
T Consensus       242 ~~i~~~L~~LdLs~N~li~~  261 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNNLIDF  261 (505)
T ss_pred             hhhhhHHhhccccCCccccc
Confidence            23344455555555544333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.50  E-value=4.4e-05  Score=74.01  Aligned_cols=84  Identities=31%  Similarity=0.294  Sum_probs=72.4

Q ss_pred             CCCCcEEeCCCCc--CCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045          125 FEELQRLDLPGNW--FTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (229)
Q Consensus       125 l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  202 (229)
                      .+.|+.|-+..|.  +......    .|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..++. +|. .++++
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~-~l~~L  617 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPS-GLGNL  617 (889)
T ss_pred             CCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cch-HHHHH
Confidence            4478889888886  5543443    58889999999999987666899999999999999999999996 998 89999


Q ss_pred             CCCCEEeccCCc
Q 027045          203 RYLQVLDLSGNF  214 (229)
Q Consensus       203 ~~L~~L~L~~N~  214 (229)
                      ..|.+|++..+.
T Consensus       618 k~L~~Lnl~~~~  629 (889)
T KOG4658|consen  618 KKLIYLNLEVTG  629 (889)
T ss_pred             Hhhheecccccc
Confidence            999999999875

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.43  E-value=9e-05  Score=61.15  Aligned_cols=84  Identities=30%  Similarity=0.364  Sum_probs=53.4

Q ss_pred             CcccCCCCCCcEEeCCCC--cCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc---ccCCCCccEEeccCCcCCCC
Q 027045          119 MSLFHPFEELQRLDLPGN--WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY---LNTLTSLTTLILSDNSIEGS  193 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~  193 (229)
                      ...|..+++|+.|.++.|  ++++-.+.    -...+++|++|+++.|++..  +..   +..+.+|..|++.+|..+. 
T Consensus        58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~-  130 (260)
T KOG2739|consen   58 LTNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN-  130 (260)
T ss_pred             cccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc-
Confidence            345667778888888888  55554443    34455888888888888762  333   3455667777887777665 


Q ss_pred             CCh---hhcCCCCCCCEEe
Q 027045          194 RTK---QGLANLRYLQVLD  209 (229)
Q Consensus       194 ip~---~~~~~l~~L~~L~  209 (229)
                      ...   ..|.-+++|++||
T Consensus       131 l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  131 LDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             cccHHHHHHHHhhhhcccc
Confidence            221   1355567777665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.89  E-value=0.00075  Score=55.79  Aligned_cols=88  Identities=28%  Similarity=0.293  Sum_probs=67.1

Q ss_pred             CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCC--CCCCCCcccccCCCCccEEeccCCcCCC--CCChhh
Q 027045          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN--FFNDSILPYLNTLTSLTTLILSDNSIEG--SRTKQG  198 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~~  198 (229)
                      ..+..|+.|.+.+-.++...      .|-.+++|++|.++.|  ++++.++.....+++|++++++.|++..  .++  .
T Consensus        40 d~~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--p  111 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--P  111 (260)
T ss_pred             ccccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--h
Confidence            34566777777776666532      6778999999999999  6666666666677999999999999873  233  3


Q ss_pred             cCCCCCCCEEeccCCcCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +..+.+|..|++.++..+..
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l  131 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNL  131 (260)
T ss_pred             hhhhcchhhhhcccCCcccc
Confidence            66788899999999877765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=5.1e-05  Score=63.48  Aligned_cols=84  Identities=30%  Similarity=0.354  Sum_probs=63.8

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc--ccccCCCCccEEeccCCcCCCCCCh
Q 027045          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL--PYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      .++..+++.|+.|.||-|.|+...      .+..+++|++|+|..|.|.. +.  ..+.++++|+.|.|..|.-.|.-+.
T Consensus        34 Isic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   34 ISICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             HHHHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccch
Confidence            345677889999999999999854      47789999999999999873 33  3567899999999999987764332


Q ss_pred             h----hcCCCCCCCEEe
Q 027045          197 Q----GLANLRYLQVLD  209 (229)
Q Consensus       197 ~----~~~~l~~L~~L~  209 (229)
                      .    .+.-+++|+.||
T Consensus       107 nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  107 NYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHHHHHHHHcccchhcc
Confidence            1    255678888775

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.71  E-value=0.0059  Score=44.78  Aligned_cols=100  Identities=19%  Similarity=0.323  Sum_probs=59.4

Q ss_pred             cEEEEecCCCccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcc
Q 027045           93 RVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP  172 (229)
Q Consensus        93 ~v~~L~L~~~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  172 (229)
                      +++.+.+...+.           .+....|...++|+.+++.++ +..+...    .|..++.++.+.+.+ .+......
T Consensus        13 ~l~~i~~~~~~~-----------~I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~-~~~~i~~~   75 (129)
T PF13306_consen   13 NLESITFPNTIK-----------KIGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN-NLKSIGDN   75 (129)
T ss_dssp             T--EEEETST-------------EE-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS-TT-EE-TT
T ss_pred             CCCEEEECCCee-----------EeChhhccccccccccccccc-cccccee----eeecccccccccccc-cccccccc
Confidence            466676665333           255677888888999999875 7765555    788888899999976 44323445


Q ss_pred             cccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccC
Q 027045          173 YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSG  212 (229)
Q Consensus       173 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~  212 (229)
                      .|..+++|+.+++..+ +.. ++...|.++ +|+.+.+..
T Consensus        76 ~F~~~~~l~~i~~~~~-~~~-i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   76 AFSNCTNLKNIDIPSN-ITE-IGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTTT-TTECEEEETTT--BE-EHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccccCcc-ccE-EchhhhcCC-CceEEEECC
Confidence            6777899999999765 554 555577777 888888765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.56  E-value=0.0013  Score=62.46  Aligned_cols=90  Identities=28%  Similarity=0.303  Sum_probs=64.4

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCC-CCcccccCCCCccEEeccCCcCCCCCC---h
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLNTLTSLTTLILSDNSIEGSRT---K  196 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip---~  196 (229)
                      ...++++|+.||+|+.+++..  .    .++.+++|+.|.+.+=.+.. ..-..+.++++|++||+|...... .+   .
T Consensus       168 lc~sFpNL~sLDIS~TnI~nl--~----GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~  240 (699)
T KOG3665|consen  168 LCASFPNLRSLDISGTNISNL--S----GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIE  240 (699)
T ss_pred             HhhccCccceeecCCCCccCc--H----HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHH
Confidence            356789999999999998875  3    78888899988888766652 222356788999999998776554 22   1


Q ss_pred             hh---cCCCCCCCEEeccCCcCCC
Q 027045          197 QG---LANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       197 ~~---~~~l~~L~~L~L~~N~l~~  217 (229)
                      ..   -..+|+|+.||.+++.+.+
T Consensus       241 qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  241 QYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHHHhcccCccccEEecCCcchhH
Confidence            11   2248899999998876654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.00084  Score=56.85  Aligned_cols=63  Identities=25%  Similarity=0.336  Sum_probs=24.9

Q ss_pred             CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCC
Q 027045          151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN  213 (229)
Q Consensus       151 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N  213 (229)
                      .++|.|+.|+++.|.+...+-..-....+|++|.|.+..+.-.-....+..+|.++.|+++.|
T Consensus        94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            345555555555555442221111233344444444443331111112334444444444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.44  E-value=0.0086  Score=43.88  Aligned_cols=89  Identities=19%  Similarity=0.322  Sum_probs=58.2

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      +....|.+.++|+.+.+.. .+..+...    .|..+++|+.+.+..+ +.......|.++.+++.+.+.+ .+.. ++.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~-i~~   74 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS-IGD   74 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E-E-T
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeecccccccccccc-cccc-ccc
Confidence            3456788889999999985 67776566    8999999999999886 6644556788888999999976 5544 555


Q ss_pred             hhcCCCCCCCEEeccCC
Q 027045          197 QGLANLRYLQVLDLSGN  213 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N  213 (229)
                      ..|..+++|+.+++..+
T Consensus        75 ~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   75 NAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             TTTTT-TTECEEEETTT
T ss_pred             ccccccccccccccCcc
Confidence            57888999999999765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.27  E-value=0.0006  Score=58.58  Aligned_cols=96  Identities=27%  Similarity=0.246  Sum_probs=63.2

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccc-----cCCCCccEEeccCCcCCCCC-
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-----NTLTSLTTLILSDNSIEGSR-  194 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~i-  194 (229)
                      .|..+++|+.|||.+|-|+..-....-..+..+++|+.|+++++.+...-...+     ...++|++|.+.+|.++..- 
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence            466788888888888888753221011146667788888888888764322222     24678888888888887411 


Q ss_pred             --ChhhcCCCCCCCEEeccCCcCC
Q 027045          195 --TKQGLANLRYLQVLDLSGNFNI  216 (229)
Q Consensus       195 --p~~~~~~l~~L~~L~L~~N~l~  216 (229)
                        -...+...+.|..|+|++|.+.
T Consensus       288 ~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  288 LALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHhcchhhHHhcCCccccc
Confidence              0112445778888888888883

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.0012  Score=55.99  Aligned_cols=85  Identities=25%  Similarity=0.222  Sum_probs=60.0

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  171 (229)
                      +|.++||.+ .++.         ++.....+.++|+|+.|+++.|++...+..    .-..+.+|+.|-|.+..+.+...
T Consensus        72 ~v~elDL~~N~iSd---------WseI~~ile~lP~l~~LNls~N~L~s~I~~----lp~p~~nl~~lVLNgT~L~w~~~  138 (418)
T KOG2982|consen   72 DVKELDLTGNLISD---------WSEIGAILEQLPALTTLNLSCNSLSSDIKS----LPLPLKNLRVLVLNGTGLSWTQS  138 (418)
T ss_pred             hhhhhhcccchhcc---------HHHHHHHHhcCccceEeeccCCcCCCcccc----CcccccceEEEEEcCCCCChhhh
Confidence            577777777 4442         222335678899999999999999886653    22456788888888888765444


Q ss_pred             c-cccCCCCccEEeccCCcC
Q 027045          172 P-YLNTLTSLTTLILSDNSI  190 (229)
Q Consensus       172 ~-~l~~l~~L~~L~Ls~N~l  190 (229)
                      . .+..++.++.|+++.|.+
T Consensus       139 ~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  139 TSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             hhhhhcchhhhhhhhccchh
Confidence            3 456778888888888844

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.93  E-value=0.0056  Score=58.23  Aligned_cols=88  Identities=23%  Similarity=0.320  Sum_probs=60.6

Q ss_pred             CCCCCcEEeCCCCcCCCc-cccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045          124 PFEELQRLDLPGNWFTGI-YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (229)
Q Consensus       124 ~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  202 (229)
                      -||+|+.|.+++-.+... .-.    ...++++|..||+|+..++..  ..++.+++|+.|.+.+=.+..--.-..+.++
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~----lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L  219 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQ----LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNL  219 (699)
T ss_pred             hCcccceEEecCceecchhHHH----HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence            467788888777666432 122    456788889999998888732  6678888888888776666531111246688


Q ss_pred             CCCCEEeccCCcCCC
Q 027045          203 RYLQVLDLSGNFNIT  217 (229)
Q Consensus       203 ~~L~~L~L~~N~l~~  217 (229)
                      ++|++||+|......
T Consensus       220 ~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  220 KKLRVLDISRDKNND  234 (699)
T ss_pred             cCCCeeecccccccc
Confidence            999999998865443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.88  E-value=0.0024  Score=32.36  Aligned_cols=11  Identities=36%  Similarity=0.362  Sum_probs=4.1

Q ss_pred             cEEeccCCcCC
Q 027045          181 TTLILSDNSIE  191 (229)
Q Consensus       181 ~~L~Ls~N~l~  191 (229)
                      ++||+++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.73  E-value=0.02  Score=51.08  Aligned_cols=50  Identities=18%  Similarity=0.230  Sum_probs=31.0

Q ss_pred             CCcEEeCCC-CcCCCccccccccccCCCCCCcEEEcCCC-CCCCCCcccccCCCCccEEeccCCcC
Q 027045          127 ELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDSILPYLNTLTSLTTLILSDNSI  190 (229)
Q Consensus       127 ~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l  190 (229)
                      +|+.|++++ ++++. +|.    .+  .++|++|++++| .+. .+|.      +|+.|+++.|..
T Consensus        73 sLtsL~Lsnc~nLts-LP~----~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~  124 (426)
T PRK15386         73 ELTEITIENCNNLTT-LPG----SI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSAT  124 (426)
T ss_pred             CCcEEEccCCCCccc-CCc----hh--hhhhhheEccCccccc-cccc------ccceEEeCCCCC
Confidence            588888876 44433 454    33  357888888887 454 3443      466677766654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.72  E-value=0.00018  Score=58.81  Aligned_cols=82  Identities=16%  Similarity=0.144  Sum_probs=37.1

Q ss_pred             CCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCC
Q 027045          125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY  204 (229)
Q Consensus       125 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~  204 (229)
                      +...+.||++.|++... ..    .|+-++.|..|+++.|.+. ..|..++....+..+++..|..+. .|. .++..+.
T Consensus        41 ~kr~tvld~~s~r~vn~-~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~-s~~k~~~  112 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNL-GK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPK-SQKKEPH  112 (326)
T ss_pred             cceeeeehhhhhHHHhh-cc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCc-cccccCC
Confidence            34444444444444431 11    3444444444555544444 344444444444444444444443 443 4444444


Q ss_pred             CCEEeccCCc
Q 027045          205 LQVLDLSGNF  214 (229)
Q Consensus       205 L~~L~L~~N~  214 (229)
                      ++++++-+|.
T Consensus       113 ~k~~e~k~~~  122 (326)
T KOG0473|consen  113 PKKNEQKKTE  122 (326)
T ss_pred             cchhhhccCc
Confidence            4444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.66  E-value=0.0058  Score=30.91  Aligned_cols=16  Identities=44%  Similarity=0.547  Sum_probs=8.8

Q ss_pred             CcEEeCCCCcCCCcccc
Q 027045          128 LQRLDLPGNWFTGIYEN  144 (229)
Q Consensus       128 L~~L~Ls~N~l~~~~p~  144 (229)
                      |++||+++|+|+ .+|.
T Consensus         2 L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             ESEEEETSSEES-EEGT
T ss_pred             ccEEECCCCcCE-eCCh
Confidence            455666666555 3444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.0006  Score=57.22  Aligned_cols=85  Identities=28%  Similarity=0.285  Sum_probs=68.6

Q ss_pred             CCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh-hhcCCCC
Q 027045          125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLR  203 (229)
Q Consensus       125 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~  203 (229)
                      +.+.+.|++=++.++.+ .     ....++.|+.|.||-|+++.  -..+..|++|+.|+|..|.|.. +.+ ..+.+++
T Consensus        18 l~~vkKLNcwg~~L~DI-s-----ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-S-----ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIES-LDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHH-H-----HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhccccc-HHHHHHHhcCc
Confidence            45677788888888874 2     46689999999999999984  3447899999999999999987 532 2467899


Q ss_pred             CCCEEeccCCcCCCC
Q 027045          204 YLQVLDLSGNFNITS  218 (229)
Q Consensus       204 ~L~~L~L~~N~l~~~  218 (229)
                      +|+.|-|..|.=.+.
T Consensus        89 sLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGE  103 (388)
T ss_pred             hhhhHhhccCCcccc
Confidence            999999999986665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.37  E-value=0.02  Score=48.22  Aligned_cols=47  Identities=26%  Similarity=0.291  Sum_probs=31.5

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN  167 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~  167 (229)
                      .+.++++|+..+||+|.|....|....+.++.-+.|.+|.+++|.+.
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            45677888888888888876666522234555666777777777664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.31  E-value=0.005  Score=53.07  Aligned_cols=18  Identities=11%  Similarity=-0.014  Sum_probs=9.7

Q ss_pred             CCCCCCcEEeCCCCcCCC
Q 027045          123 HPFEELQRLDLPGNWFTG  140 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~  140 (229)
                      ..-+.|+++..+.|++..
T Consensus       154 ~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CCCcceEEEEeecccccc
Confidence            344556666666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.83  E-value=0.092  Score=46.87  Aligned_cols=74  Identities=23%  Similarity=0.208  Sum_probs=45.3

Q ss_pred             CCCcEEeCCCC-cCCCccccccccccCCCCCCcEEEcCCCCCC--CCCcccccCC------------------CCccEEe
Q 027045          126 EELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFN--DSILPYLNTL------------------TSLTTLI  184 (229)
Q Consensus       126 ~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l------------------~~L~~L~  184 (229)
                      ++|++|++++| .+.. +|.          .|+.|+++.|...  +.+|..+..+                  ++|++|+
T Consensus        94 ~nLe~L~Ls~Cs~L~s-LP~----------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~  162 (426)
T PRK15386         94 EGLEKLTVCHCPEISG-LPE----------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLS  162 (426)
T ss_pred             hhhhheEccCcccccc-ccc----------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEE
Confidence            57999999998 5554 554          3566666655431  1344433222                  3678888


Q ss_pred             ccCCcCCCCCChhhcCCCCCCCEEeccCCc
Q 027045          185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNF  214 (229)
Q Consensus       185 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~  214 (229)
                      +++|.... +|. .+.  .+|++|+++.|.
T Consensus       163 Is~c~~i~-LP~-~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        163 LTGCSNII-LPE-KLP--ESLQSITLHIEQ  188 (426)
T ss_pred             ecCCCccc-Ccc-ccc--ccCcEEEecccc
Confidence            88777554 443 232  478888887763

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.43  E-value=0.022  Score=47.97  Aligned_cols=120  Identities=15%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             CCcEEEEecCCCccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccc-------cccccCCCCCCcEEEcCC
Q 027045           91 TRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENR-------AYDSFGSLKQLKMLNLGD  163 (229)
Q Consensus        91 ~~~v~~L~L~~~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-------~~~~~~~l~~L~~L~Ls~  163 (229)
                      ...+++++|+++-.|+=..      .--...+.+-.+|+..+++.-. +|..-++       ..+.+..+++|+..+||.
T Consensus        29 ~d~~~evdLSGNtigtEA~------e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD  101 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAM------EELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSD  101 (388)
T ss_pred             hcceeEEeccCCcccHHHH------HHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence            3467888888843331000      0001224455677777776543 3322211       113567889999999999


Q ss_pred             CCCCCCCcccc----cCCCCccEEeccCCcCCCCCChhhcC-------------CCCCCCEEeccCCcCCCC
Q 027045          164 NFFNDSILPYL----NTLTSLTTLILSDNSIEGSRTKQGLA-------------NLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       164 N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~~~ip~~~~~-------------~l~~L~~L~L~~N~l~~~  218 (229)
                      |.|....|+.+    ++-..|.+|.+++|.+.. +....++             +-|.|+.++...|++..-
T Consensus       102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp-~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng  172 (388)
T COG5238         102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP-IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG  172 (388)
T ss_pred             cccCcccchHHHHHHhcCCCceeEEeecCCCCc-cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC
Confidence            99887667544    566789999999988753 4432333             356788888888887653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.30  E-value=0.028  Score=26.51  Aligned_cols=11  Identities=55%  Similarity=0.646  Sum_probs=3.2

Q ss_pred             ccEEeccCCcC
Q 027045          180 LTTLILSDNSI  190 (229)
Q Consensus       180 L~~L~Ls~N~l  190 (229)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33334444333

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.09  E-value=0.0024  Score=54.20  Aligned_cols=112  Identities=19%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             CCCcEEEEecCC--CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccc-------------------
Q 027045           90 TTRRVMQLSLNE--TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD-------------------  148 (229)
Q Consensus        90 ~~~~v~~L~L~~--~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-------------------  148 (229)
                      .+..+++++++.  +++..          -..-.+.+++.|..|+|+.+.++...-..+-.                   
T Consensus       232 kN~~L~~lnlsm~sG~t~n----------~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~  301 (419)
T KOG2120|consen  232 KNSNLVRLNLSMCSGFTEN----------ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ  301 (419)
T ss_pred             ccccceeeccccccccchh----------HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence            455678888877  55431          01123556677777777777665432110000                   


Q ss_pred             ------ccCCCCCCcEEEcCCCC-CCCCCcccccCCCCccEEeccCCcCCCCCCh--hhcCCCCCCCEEeccCC
Q 027045          149 ------SFGSLKQLKMLNLGDNF-FNDSILPYLNTLTSLTTLILSDNSIEGSRTK--QGLANLRYLQVLDLSGN  213 (229)
Q Consensus       149 ------~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~~~l~~L~~L~L~~N  213 (229)
                            -...+++|..|||+.|. ++...-..|..++.|++|.++.+..-  +|.  -.+...++|.+|++.+.
T Consensus       302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence                  12345566666666543 34333334555566666666555432  221  02445566666665543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.90  E-value=0.061  Score=28.06  Aligned_cols=18  Identities=28%  Similarity=0.335  Sum_probs=10.6

Q ss_pred             CCccEEeccCCcCCCCCCh
Q 027045          178 TSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       178 ~~L~~L~Ls~N~l~~~ip~  196 (229)
                      ++|++|+|++|+++. +|.
T Consensus         2 ~~L~~L~L~~N~l~~-lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSS-LPP   19 (26)
T ss_pred             CCCCEEECCCCcCCc-CCH
Confidence            455666666666655 554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.90  E-value=0.061  Score=28.06  Aligned_cols=18  Identities=28%  Similarity=0.335  Sum_probs=10.6

Q ss_pred             CCccEEeccCCcCCCCCCh
Q 027045          178 TSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       178 ~~L~~L~Ls~N~l~~~ip~  196 (229)
                      ++|++|+|++|+++. +|.
T Consensus         2 ~~L~~L~L~~N~l~~-lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSS-LPP   19 (26)
T ss_pred             CCCCEEECCCCcCCc-CCH
Confidence            455666666666655 554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.23  E-value=0.0027  Score=53.92  Aligned_cols=89  Identities=24%  Similarity=0.178  Sum_probs=46.4

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCC-CCCCCCc-ccccCCCCccEEeccCCcCCCC------
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDSIL-PYLNTLTSLTTLILSDNSIEGS------  193 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~------  193 (229)
                      +.++.+|+.|.+.++++...+-.    .+..-..|+.|+++.. .++..-. --+.+++.|..|+|+++.+..+      
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V  281 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV  281 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH
Confidence            44555666666666666655544    4555555555555543 2321111 1133445555555554443321      


Q ss_pred             -----------------------CChhhcCCCCCCCEEeccCCcC
Q 027045          194 -----------------------RTKQGLANLRYLQVLDLSGNFN  215 (229)
Q Consensus       194 -----------------------ip~~~~~~l~~L~~L~L~~N~l  215 (229)
                                             +.. ....+++|.+|||+.|..
T Consensus       282 ~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~  325 (419)
T KOG2120|consen  282 AHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVM  325 (419)
T ss_pred             hhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccc
Confidence                                   111 234688999999988753

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.81  E-value=0.14  Score=26.63  Aligned_cols=15  Identities=33%  Similarity=0.552  Sum_probs=7.9

Q ss_pred             CCCcEEeCCCCcCCC
Q 027045          126 EELQRLDLPGNWFTG  140 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~  140 (229)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            345555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.81  E-value=0.14  Score=26.63  Aligned_cols=15  Identities=33%  Similarity=0.552  Sum_probs=7.9

Q ss_pred             CCCcEEeCCCCcCCC
Q 027045          126 EELQRLDLPGNWFTG  140 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~  140 (229)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            345555555555555

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.64  E-value=0.0041  Score=51.07  Aligned_cols=85  Identities=15%  Similarity=0.025  Sum_probs=70.0

Q ss_pred             CCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCC
Q 027045           90 TTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND  168 (229)
Q Consensus        90 ~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~  168 (229)
                      ...+++.||++. ++..           + -.-|+-++.+..|+++.|++.. .|.    .+..+..+..+++.+|.++ 
T Consensus        40 ~~kr~tvld~~s~r~vn-----------~-~~n~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~~~-  101 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVN-----------L-GKNFSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNNHS-  101 (326)
T ss_pred             ccceeeeehhhhhHHHh-----------h-ccchHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccchh-
Confidence            356899999988 5543           1 1336667889999999999988 666    8888999999999999988 


Q ss_pred             CCcccccCCCCccEEeccCCcCCC
Q 027045          169 SILPYLNTLTSLTTLILSDNSIEG  192 (229)
Q Consensus       169 ~~p~~l~~l~~L~~L~Ls~N~l~~  192 (229)
                      ..|.+++..+.++++++..|.+..
T Consensus       102 ~~p~s~~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  102 QQPKSQKKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             hCCccccccCCcchhhhccCcchH
Confidence            789999999999999999998764

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.83  E-value=0.64  Score=24.47  Aligned_cols=16  Identities=38%  Similarity=0.210  Sum_probs=8.5

Q ss_pred             CCCCEEeccCCcCCCC
Q 027045          203 RYLQVLDLSGNFNITS  218 (229)
Q Consensus       203 ~~L~~L~L~~N~l~~~  218 (229)
                      .+|+.|+++.|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            3455555555555544

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.34  E-value=0.57  Score=24.67  Aligned_cols=17  Identities=29%  Similarity=0.389  Sum_probs=10.7

Q ss_pred             CccEEeccCCcCCCCCCh
Q 027045          179 SLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       179 ~L~~L~Ls~N~l~~~ip~  196 (229)
                      +|+.|++++|+++. +|+
T Consensus         3 ~L~~L~vs~N~Lt~-LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTS-LPE   19 (26)
T ss_pred             ccceeecCCCcccc-Ccc
Confidence            46666666666665 554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.93  E-value=0.49  Score=24.00  Aligned_cols=15  Identities=40%  Similarity=0.536  Sum_probs=7.5

Q ss_pred             CCCcEEeCCCCcCCC
Q 027045          126 EELQRLDLPGNWFTG  140 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~  140 (229)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            455666666666554

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (261), Expect = 7e-26
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 29/181 (16%)

Query: 35  ACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRV 94
             L  E   L+  K           D  +LP W       + + C  ++GV C     +V
Sbjct: 8   QSLYREIHQLISFKDVLP-------DKNLLPDWSS-----NKNPCT-FDGVTCR--DDKV 52

Query: 95  MQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK 154
             + L+     N    + S+ LL+++       L+ L L  +   G     +   F    
Sbjct: 53  TSIDLSSK-PLNVGFSAVSSSLLSLT------GLESLFLSNSHING-----SVSGFKCSA 100

Query: 155 QLKMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSG 212
            L  L+L  N  +  +     L + + L  L +S N+++      G   L  L+VLDLS 
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

Query: 213 N 213
           N
Sbjct: 161 N 161

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           LQ L L  N FTG   +      G+   L  L+L  N F  ++ P+  + + L +L LS 
Sbjct: 271 LQYLSLAENKFTGEIPD---FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGN 213
           N+  G      L  +R L+VLDLS N
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
            L+ L L  N  TG           +   L  ++L +N     I  ++  L +L  L LS
Sbjct: 467 TLETLILDFNDLTGEIP----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGN 213
           +NS  G+   + L + R L  LDL+ N
Sbjct: 523 NNSFSGNIPAE-LGDCRSLIWLDLNTN 548

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 106 NYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF 165
           N  +G     L N S      EL  L L  N+ +G   +    S GSL +L+ L L  N 
Sbjct: 404 NGFTGKIPPTLSNCS------ELVSLHLSFNYLSGTIPS----SLGSLSKLRDLKLWLNM 453

Query: 166 FNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
               I   L  + +L TLIL  N + G     GL+N   L  + LS N
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNN 500

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 16/107 (14%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ LD+  N F+           G    L+ L++  N  +      ++T T L  L +S 
Sbjct: 202 LEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNIT-------SGSLTRLGRL 227
           N   G         L+ LQ L L+ N   T       SG+   L  L
Sbjct: 257 NQFVGP---IPPLPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGL 299

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLNTLT 178
            L    + L  LDL GN F G         FGS   L+ L L  N F+  +    L  + 
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPP----FFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 179 SLTTLILSDNSIEGSRTKQGLANLRY-LQVLDLSGN 213
            L  L LS N   G   +  L NL   L  LDLS N
Sbjct: 344 GLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSN 378

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-NTLTSLTTLILS 186
           L+ L L  N F+G       D+   ++ LK+L+L  N F+  +   L N   SL TL LS
Sbjct: 320 LESLALSSNNFSGELPM---DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

Query: 187 DNSIEGS-RTKQGLANLRYLQVLDLSGN 213
            N+  G             LQ L L  N
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNN 404

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 9/112 (8%)

Query: 103 IKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLG 162
           I  N+ +G     + N  +     +          F GI      +    L      N+ 
Sbjct: 565 IAANFIAGKRYVYIKNDGMK----KECHGAGNLLEFQGIR----SEQLNRLSTRNPCNIT 616

Query: 163 DNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF 214
              +     P  +   S+  L +S N + G   K+ + ++ YL +L+L  N 
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHND 667

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 128 LQRLDLPGNWFTG-IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
           +  LD+  N  +G I +       GS+  L +LNLG N  + SI   +  L  L  L LS
Sbjct: 634 MMFLDMSYNMLSGYIPK-----EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGN 213
            N ++G   +  ++ L  L  +DLS N
Sbjct: 689 SNKLDGRIPQA-MSALTMLTEIDLSNN 714

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 20/107 (18%), Positives = 30/107 (28%), Gaps = 19/107 (17%)

Query: 125 FEELQRLDLPGNWFTG----------------IYENRAYDSFGSLKQLKMLNLGDNF--F 166
              L  LDL  N F G                    + Y    +    K  +   N   F
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 167 NDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
                  LN L++     ++     G  +     N   +  LD+S N
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 127 ELQRLDLPGNWFTG-IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLIL 185
            L  L L  N F+G I         G  + L  L+L  N FN +I   +   +      +
Sbjct: 515 NLAILKLSNNSFSGNIP-----AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----I 565

Query: 186 SDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSL 221
           + N I G R    + N    +    +GN     G  
Sbjct: 566 AANFIAGKRYVY-IKNDGMKKECHGAGNLLEFQGIR 600

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 128 LQRLDLPGNWFTG-IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
           L  L+L  N  +G I +       G L+ L +L+L  N  +  I   ++ LT LT + LS
Sbjct: 658 LFILNLGHNDISGSIPD-----EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

Query: 187 DNSIEG 192
           +N++ G
Sbjct: 713 NNNLSG 718

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 78.3 bits (194), Expect = 2e-17
 Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 48/205 (23%)

Query: 36  CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCD-DWEGVKCNATTR-- 92
           C   ++ ALL+IK           +   L SW+      ++DCC+  W GV C+  T+  
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLP-----TTDCCNRTWLGVLCDTDTQTY 50

Query: 93  RVMQLSLNETIKFNYSSGSGS--------ALLLNMSLFHP-------------FEELQRL 131
           RV  L L+                       L  + +                  +L  L
Sbjct: 51  RVNNLDLSG----LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 132 DLPGNWFTG-IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSI 190
            +     +G I      D    +K L  L+   N  + ++ P +++L +L  +    N I
Sbjct: 107 YITHTNVSGAIP-----DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 191 EGSRTKQGLANLRYL-QVLDLSGNF 214
            G+       +   L   + +S N 
Sbjct: 162 SGAIPDS-YGSFSKLFTSMTISRNR 185

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 15/114 (13%)

Query: 109 SGSGSALLLNMSLFHPFEELQRLDLPGNWFTG-IYENRAYDSFGSLKQLKMLNLGDNFFN 167
            G  S L  +          Q++ L  N     +         G  K L  L+L +N   
Sbjct: 210 EGDASVLFGSDK------NTQKIHLAKNSLAFDL------GKVGLSKNLNGLDLRNNRIY 257

Query: 168 DSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSL 221
            ++   L  L  L +L +S N++ G   + G  NL+   V   + N  +    L
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 128 LQRLDLPGNWFTG-IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
              + +  N  TG I       +F +L  L  ++L  N           +  +   + L+
Sbjct: 176 FTSMTISRNRLTGKIP-----PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGN 213
            NS+     K  +   + L  LDL  N
Sbjct: 230 KNSLAFDLGK--VGLSKNLNGLDLRNN 254

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           F   E+L+ LD   +    + E   +  F SL+ L  L++       +     N L+SL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            L ++ NS + +        LR L  LDLS      ++  +   L  L
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 7e-13
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
             +     L  L L GN    +       +F  L  L+ L   +          +  L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L  L ++ N I+  +  +  +NL  L+ LDLS N   +I    L  L ++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
            + LDL  N    +       SF S  +L++L+L              +L+ L+TLIL+ 
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           N I+        + L  LQ L        ++ +  +  L  L
Sbjct: 86  NPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
            +F+    L+ L + GN F   +     D F  L+ L  L+L             N+L+S
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR 229
           L  L +S N+            L  LQVLD S N +I +     L     
Sbjct: 496 LQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPS 543

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
                +F     L  LDL       +    +  +F SL  L++LN+  N F         
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
            L SL  L  S N I  S+ ++       L  L+L+ N
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
             N         L+ LDL  N  +         S      LK L+L  N    ++     
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCS--QSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
            L  L  L    ++++         +LR L  LD+S  
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 27/109 (24%), Positives = 37/109 (33%), Gaps = 9/109 (8%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKM----LNLGDNFFNDSILPYLN 175
             F     L+ LDL  N    IY          L Q+ +    L+L  N  N  I P   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224
               L  L L +N    +  K  +  L  L+V  L        G+L + 
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 33/141 (23%), Positives = 44/141 (31%), Gaps = 34/141 (24%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLN 175
           L +  F     LQ+L         +         G LK LK LN+  N      LP Y +
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 176 TLTSLTTLILSDNSIEGSRTK--QGLANLRY------------------------LQVLD 209
            LT+L  L LS N I+       + L  +                          L  L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 210 LSGNF---NITSGSLTRLGRL 227
           L  NF   N+    +  L  L
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGL 227

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 12/125 (9%)

Query: 100 NETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKML 159
           N TI+    +     L   + LF+    +    L       +        F      + L
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV------KDFSYNFGWQHL 309

Query: 160 NLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG 219
            L +  F       L +L  LT       +           +L  L+ LDLS N     G
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA------FSEVDLPSLEFLDLSRNGLSFKG 363

Query: 220 SLTRL 224
             ++ 
Sbjct: 364 CCSQS 368

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 120 SLFHPFEELQRLDLPGNWFTGI--YENRAYDSFGSLKQLKMLNLGDNFFNDS---ILPYL 174
           +       L+   L    F      E     +   L  L +      + +     I+   
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           N LT++++  L   +IE  +        ++L++++        +  L  L RL
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRL 330

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-NTLT 178
           + F+    LQ L++  N F  +        +  L  L++L+   N    S    L +  +
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSL----DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 179 SLTTLILSDNSIEGS 193
           SL  L L+ N    +
Sbjct: 544 SLAFLNLTQNDFACT 558

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 25/93 (26%), Positives = 28/93 (30%), Gaps = 10/93 (10%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           F      Q L+L    F              LK LK L    N            L SL 
Sbjct: 300 FSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTSNKGG--NAFSEVDLPSLE 350

Query: 182 TLILSDNSIEGS-RTKQGLANLRYLQVLDLSGN 213
            L LS N +       Q       L+ LDLS N
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           +H    L  L L GN            SF  L  L+ L   +          +  L +L 
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            L ++ N I   +     +NL  L  +DLS N+   IT   L  L   
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 111 SGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170
           S +  ++  + F   EELQ LD   +    + E     +F SL++L  L++         
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDISYTNTKIDF 440

Query: 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
                 LTSL TL ++ NS + +      AN   L  LDLS      I+ G    L RL
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           F  F ELQ LDL       I +     ++  L  L  L L  N          + LTSL 
Sbjct: 52  FSNFSELQWLDLSRCEIETIED----KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSL 221
            L+  +  +    +   +  L  L+ L+++ N  I S  L
Sbjct: 108 NLVAVETKLASLES-FPIGQLITLKKLNVAHN-FIHSCKL 145

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
               + +DL  N    +       SF +  +L+ L+L             + L  L+ LI
Sbjct: 31  PSSTKNIDLSFNPLKILKSY----SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L+ N I+   +    + L  L+ L        ++ S  + +L  L
Sbjct: 87  LTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLN 175
            +   F     L+ L         +         G L  LK LN+  NF +   LP Y +
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 176 TLTSLTTLILSDNSIEGSRTK--QGLANLRY-LQVLDLSGNF 214
            LT+L  + LS N I+       Q L         LD+S N 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           ++F     L  LDL       I        F +L +L++LN+  N        + N L S
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISW----GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           L+TL  S N IE S         + L   +L+ N
Sbjct: 523 LSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFF---NDSILPYLNT 176
                   L++L++  N+            F +L  L  ++L  N+      + L +L  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLP---AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 177 LT-SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218
                 +L +S N I     +        L  L L GNFN ++
Sbjct: 179 NPQVNLSLDMSLNPI--DFIQDQAFQGIKLHELTLRGNFNSSN 219

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 1/105 (0%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           + F     L  +DL  N+   I  N       + +    L++  N  +  I         
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK 205

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224
           L  L L  N    +  K  L NL  L V  L         +L   
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 21/103 (20%), Positives = 28/103 (27%), Gaps = 10/103 (9%)

Query: 113 SALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN--DSI 170
               L          L+ L L  N  +  +         +L  L  L+L  N  +     
Sbjct: 315 IRCQLKQFPTLDLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRNALSFSGCC 368

Query: 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
                   SL  L LS N             L  LQ LD   +
Sbjct: 369 SYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHS 409

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           ++  +F     LQ L++  N    +        +  L  L  L+   N    S     + 
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFL----DSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 177 LTSLTTLILSDNSI 190
             SL    L++NS+
Sbjct: 544 PKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 15/114 (13%), Positives = 32/114 (28%), Gaps = 9/114 (7%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYD--SFGSLKQLKMLNLGDNFFNDSILPY--LN 175
           +       L    L    F        ++      L  + +      + ND        +
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            L +++ + L+  SI+     + +      Q L +         +  L  L  L
Sbjct: 283 CLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL 333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 8e-13
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 7/114 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L+   F     L  L L  N    I  N     F   K L  L+L  N  + + L     
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 177 LTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L +L  L+LS+N I+     +  +     L+ L+LS N     + G    +GRL
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 9e-13
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L  + F  + +L  LD+  N  + +      +    L  LK+LNL  N  +         
Sbjct: 40  LPAANFTRYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            T+LT L L  NSI+  +        + L  LDLS N   +   G+  +L  L
Sbjct: 96  CTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           F     L+ LDL  N             +  L+ +  + L  N +          + SL 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 182 TLILSDNSIEGSRTKQG-LANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            L+L   +++   +       LR L +LDLS N   NI    L  L +L
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 2/113 (1%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +  ++F     L+ L L  ++ +            +   L +LNL  N  +       + 
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L  L  L L  N I    T Q    L  +  + LS N    +T  S   +  L
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           + F     LQRL L       +  + +   F  L+ L +L+L +N   +     L  L  
Sbjct: 448 NSFALVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 180 LTTLILSDNSIE-------GSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L  L L  N++               L  L +L +L+L  N    I       L  L
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
             +        L  L+L  N F  I      + F  L +LK+++LG N  N       N 
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEI----PVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN-FNITSGSLTRLGRLLR 229
             SL +L L  N I     K      R L  LD+  N F+ T  S+      + 
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN- 175
           ++   F   + L+ L++  N   GI  N     F  L  LK L+L ++F +   L     
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSN----MFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 176 ---TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN---FNITSGSLTRLGRL 227
                + L  L L+ N I         + L +L+VLDL  N     +T      L  +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 7/105 (6%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              +  L+L  N    +       +F    QL  L++G N  +         L  L  L 
Sbjct: 24  PTNITVLNLTHNQLRRLPAA----NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L  N +    + +  A    L  L L  N    I +    +   L
Sbjct: 80  LQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 14/110 (12%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  LDL  N    +      DSF  L QL+   L  N         L+ L ++  L L  
Sbjct: 250 LTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 188 NSIEGSRTKQGL--------ANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           +  + S +   L          L+ L+ L++  N    I S   T L  L
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 113 SALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-------- 164
             +  + S F P   L  LDL  N    I      D    L++L++L+L  N        
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANI----NDDMLEGLEKLEILDLQHNNLARLWKH 522

Query: 165 FFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLT 222
                 + +L  L+ L  L L  N  +     +   +L  L+++DL  N    + +    
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 223 RLGRL 227
               L
Sbjct: 582 NQVSL 586

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 12/117 (10%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRA-----YDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
            H    ++ L+L  ++        +       SF  LK L+ LN+ DN            
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 177 LTSLTTLILSDNSIEG----SRTKQGLANLRYLQVLDLSGN--FNITSGSLTRLGRL 227
           L +L  L LS++        + T   LA+   L +L+L+ N    I S + + LG L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHL 407

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLK--QLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
            ++ L L  +  +         +F  LK   L ML+L  N  N         L  L    
Sbjct: 223 SIRNLSLSNSQLSTTSN----TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           L  N+I+       L  L  ++ L+L  +F   S SL  L ++
Sbjct: 279 LEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
             +      E LQ L L  N    +          +   LK L L  N   +      + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSE--ELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

Query: 177 LTSLTTLILSDNSIEGSRTK--QGLANLRYLQVLDLSGNFNITS 218
           +  L  L L++  +  S T+          ++ L LS +  +++
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 10/103 (9%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
             +  D      T +              + +LNL  N             + LT+L + 
Sbjct: 5   SHEVADCSHLKLTQV-------PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            N+I      +    L  L+VL+L  N    ++  +      L
Sbjct: 58  FNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              ++ L +     T        +    L  L+ L +         +P L+ LTSLT L 
Sbjct: 65  AHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           +S ++ + S     +  L  +  +DLS N  IT      +L  L  L
Sbjct: 119 ISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSL 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  LD+  +       +       +L ++  ++L  N     I+P L TL  L +L +  
Sbjct: 114 LTLLDISHSAHD----DSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQF 168

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218
           + +   R   G+ +   L  L       I  
Sbjct: 169 DGVHDYR---GIEDFPKLNQLYAFSQ-TIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL 208
           +   +  L  + L +    D  L  +    ++  L +++           ++ L  L+ L
Sbjct: 39  TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERL 93

Query: 209 DLSGNFNITSGSLTRLGRL 227
            + G  ++TS  +  L  L
Sbjct: 94  RIMGK-DVTSDKIPNLSGL 111

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 4e-12
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 21/152 (13%)

Query: 62  KILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSL 121
            + P      D + S    +   +K      RV+ L+  +              L  +  
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD--------------LTVLCH 458

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
                 +  LDL  N    +          +L+ L++L   DN   +  +  +  L  L 
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLPRLQ 511

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
            L+L +N ++ S   Q L +   L +L+L GN
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 26/113 (23%), Positives = 37/113 (32%), Gaps = 7/113 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +  + F     L  LDL       I+E    D+F S  +L  L L  N         L+ 
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQIYWIHE----DTFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
             +L  L      I        L N + L+ L L  N   +I         +L
Sbjct: 104 PKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           ++ + FH F  LQ LDL     + +           L  LK L L  N F +      + 
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELP-----SGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN----FNITSGSLTRLGRL 227
             SLT L +  N+         L NL  L+ LDLS +     +  +  L  L  L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSL 180
            F    +L+ LDL            A   F +L  LK+LNL  +  + S     + L +L
Sbjct: 395 AFKECPQLELLDLAFTRLKVK---DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 181 TTLILSDNSIEGSRTKQ--GLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
             L L  N       ++   L  L  L++L LS     +I   + T L  +
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 4/115 (3%)

Query: 115 LLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL 174
           L L        E L+ LDL  +               +L  L+ LNL  N          
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCN--LQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
                L  L L+   ++    +    NL  L+VL+LS +     +      L  L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 7/105 (6%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
               + L+   N    I       +F  L  L  L+L              +   L TL+
Sbjct: 32  PNSTECLEFSFNVLPTIQNT----TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L+ N +     +  L+  + L+ L        +I    L     L
Sbjct: 88  LTANPLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +  +     + L+ L       + I          + K L+ L LG N  +   LP    
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215
              L  L   +N+I    +K+ +++L+    L L+ N N
Sbjct: 152 TEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLNLNGN 189

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 10/126 (7%)

Query: 106 NYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK--QLKMLNLGD 163
           N+       ++         + L            I        F  L    ++ +NL  
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP----AVFEGLCEMSVESINLQK 263

Query: 164 NFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSL 221
           ++F +      +  + L  L L+   +  S    GL  L  L+ L LS N   N+   S 
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISA 321

Query: 222 TRLGRL 227
           +    L
Sbjct: 322 SNFPSL 327

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
            +  LF     LQ L+L GN F      +  +S  +L +L++L L     +        +
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218
           L  +  + LS N +  S + + L++L+ +  L+L+ N +I+ 
Sbjct: 499 LKMMNHVDLSHNRLTSS-SIEALSHLKGI-YLNLASN-HISI 537

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           +       L+ L L     + I +     +F SLK +  ++L  N    S +  L+ L  
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQ----HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           +  L L+ N I        L  L   + ++L  N
Sbjct: 526 IY-LNLASNHISIIL-PSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           ++   F   + +  +DL  N  T        ++   LK +  LNL  N  +  +   L  
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSI----EALSHLKGI-YLNLASNHISIILPSLLPI 545

Query: 177 LTSLTTLILSDNSIEGS 193
           L+   T+ L  N ++ +
Sbjct: 546 LSQQRTINLRQNPLDCT 562

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.7 bits (155), Expect = 6e-12
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 8/123 (6%)

Query: 109 SGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND 168
               + L ++   F     L+ LDL  +    ++     D+F  L  L  L L     +D
Sbjct: 56  GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP----DAFQGLFHLFELRLYFCGLSD 111

Query: 169 SILP--YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRL 224
           ++L   Y   L +LT L LS N I           L  L+ +D S N    +    L  L
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171

Query: 225 GRL 227
              
Sbjct: 172 QGK 174

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           LN  +F   ++L+ L+L  N    I +    ++F  L  L++LNL  N   +        
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIAD----EAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           L  +  + L  N I      Q    L  LQ LDL  N   T   +  +  +
Sbjct: 337 LPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI 386

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 12/119 (10%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +  S F   E+LQ L+L   +     +    ++F +L  L++L+LG +            
Sbjct: 39  VTASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAFQG 95

Query: 177 LTSLTTLILSDNSIEGSRTKQG-LANLRYLQVLDLSGNFNITS-------GSLTRLGRL 227
           L  L  L L    +  +  K G   NL+ L  LDLS N  I S       G L  L  +
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSI 153

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 10/119 (8%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L  +        LQ L L  N F+    ++   +      L+ L LG+N    +    L 
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQ---TPSENPSLEQLFLGENMLQLAWETELC 472

Query: 176 T-----LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR 229
                 L+ L  L L+ N +  S      ++L  L+ L L+ N  +T  S   L   L 
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLE 529

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +    F+  + LQ L+L  N    +Y +    +F  L ++  ++L  N            
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSS----NFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR 229
           L  L TL L DN++        +  +  +  + LSGN  +T   +     L+ 
Sbjct: 361 LEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 19/112 (16%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLN 175
           L  S F+   ++  +DL  N    I +     +F  L++L+ L+L DN       +P + 
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQ----TFKFLEKLQTLDLRDNALTTIHFIPSIP 384

Query: 176 TLT--------------SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
            +               +   + LS+N +E       L  + +LQ+L L+ N
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENR-AYDSFGSLKQLKMLNLGDNFFNDSILPYL 174
                       L++L L  N     +E    +D F  L  L++L L  N+ N       
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           + LT+L  L L+ N +              L++LD+S N  + + +      L
Sbjct: 501 SHLTALRGLSLNSNRL---TVLSHNDLPANLEILDISRN-QLLAPNPDVFVSL 549

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 113 SALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP 172
           S  +L    F   + L RLDL  N    +Y +    SFG L  LK ++   N        
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 173 YLNTLT--SLTTLILSDNSIE-----GSRTKQGLANLRYLQVLDLSGNF 214
            L  L   +L+   L+ NS+                   L++LD+SGN 
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 32/130 (24%), Positives = 43/130 (33%), Gaps = 19/130 (14%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYD----SFGSLKQLKMLNLGDN-------- 164
           +    F   E+LQ LDL  N  T I+   +      S   L  L  +NL  N        
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412

Query: 165 FFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF-------NIT 217
             N  IL +L  +  L  LIL+ N        Q  +    L+ L L  N         + 
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

Query: 218 SGSLTRLGRL 227
                 L  L
Sbjct: 473 WDVFEGLSHL 482

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 13/112 (11%)

Query: 128 LQRLDLPGNWFTGIYEN--------RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL-- 177
           L+ LD+ GN +T                 S      +     G +   D        L  
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN--FNITSGSLTRLGRL 227
           +S+  L LS   +    ++     L+ L+VL+L+ N    I   +   L  L
Sbjct: 266 SSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYGLDNL 316

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLD 209
              L   + L L  N+           L  L  L L       +  K+   NL  L++LD
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 210 LSGNF--NITSGSLTRLGRL 227
           L  +    +   +   L  L
Sbjct: 80  LGSSKIYFLHPDAFQGLFHL 99

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-L 174
           +   S+F     L  LD+        +       F  L  L++L +  N F ++ LP   
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
             L +LT L LS   +E   +     +L  LQVL+++ N  + S   G   RL  L
Sbjct: 467 TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSL 520

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           +     L  L L GN    +    A  +F  L  L+ L   +          +  L +L 
Sbjct: 72  YQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            L ++ N I+  +  +  +NL  L+ LDLS N   +I    L  L ++
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L    F  F ELQ LDL       I +     ++ SL  L  L L  N      L   + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-------GSLTRLGRL 227
           L+SL  L+  + ++  S     + +L+ L+ L+++ N  I S        +LT L  L
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHL 154

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           S F   E+L+ LD   +    + E   +  F SL+ L  L++       +     N L+S
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L  L ++ NS + +        LR L  LDLS      ++  +   L  L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 14/133 (10%)

Query: 87  CNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSL----FHPFEELQRLDLPGNWFTGIY 142
            N ++  ++ +++     F+Y+ G     L+N           + L+RL    N     +
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 143 ENRAYDSFGSLKQLKMLNLGDNFFNDSILP--YLNTLTSLTTLILSDNSIEGSRTKQGLA 200
                 S   L  L+ L+L  N  +            TSL  L LS N +          
Sbjct: 342 ------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFL 393

Query: 201 NLRYLQVLDLSGN 213
            L  L+ LD   +
Sbjct: 394 GLEQLEHLDFQHS 406

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LN 175
               +F+    L+ L + GN F   +     D F  L+ L  L+L        + P   N
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLE-QLSPTAFN 491

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           +L+SL  L ++ N ++ S        L  LQ + L  N
Sbjct: 492 SLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 27/109 (24%), Positives = 37/109 (33%), Gaps = 9/109 (8%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKM----LNLGDNFFNDSILPYLN 175
             F     L+ LDL  N    IY          L Q+ +    L+L  N  N  I P   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224
               L  L L +N    +  K  +  L  L+V  L        G+L + 
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 28/132 (21%), Positives = 42/132 (31%), Gaps = 16/132 (12%)

Query: 100 NETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKML 159
           N TI+    +     L   + LF+    +    L       +        F      + L
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV------KDFSYNFGWQHL 309

Query: 160 NLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN----FN 215
            L +  F     P L  L SL  L  + N    + ++  L +   L+ LDLS N      
Sbjct: 310 ELVNCKFGQ--FPTLK-LKSLKRLTFTSNKGGNAFSEVDLPS---LEFLDLSRNGLSFKG 363

Query: 216 ITSGSLTRLGRL 227
             S S      L
Sbjct: 364 CCSQSDFGTTSL 375

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
                 + L+ L++  N           + F +L  L+ L+L  N         L  L  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 180 LT----TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF---NITSGSLTRLGRL 227
           +     +L LS N +  +  + G      L  L L  NF   N+    +  L  L
Sbjct: 175 MPLLNLSLDLSLNPM--NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN---FFNDSILPYLNT 176
            +F     L  LDL       +       +F SL  L++LN+  N      D I      
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMASNQLKSVPDGIFD---R 516

Query: 177 LTSLTTLILSDNSIEGS 193
           LTSL  + L  N  + S
Sbjct: 517 LTSLQKIWLHTNPWDCS 533

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           SL      ++ LDL GN  + I             +L++LNL  N   +     L +L++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L TL L++N +      Q L     ++ L  + N    ++         +
Sbjct: 82  LRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSRGQGKKNI 125

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 9/108 (8%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSL 180
           +       +   +  +       +       S   +K L+L  N  +      L   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-GSLTRLGRL 227
             L LS N +  +     L +L  L+ LDL+ N  +        +  L
Sbjct: 61  ELLNLSSNVLYETLD---LESLSTLRTLDLNNN-YVQELLVGPSIETL 104

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLNTLTSLTTL 183
            +  + + L  N  T + +       G   +++ L+L  N  +  +      +  +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 184 ILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGRL 227
            L  N I      +G      L+ LDLS N  +        S   +  +
Sbjct: 175 NLQYNFIY---DVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWI 219

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 13/111 (11%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
                 +Q LDL  N    +      +   S   L+ LNL  NF     +        L 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGRL 227
           TL LS N +  +       +   +  + L  N  +            L   
Sbjct: 195 TLDLSSNKL--AFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 22/117 (18%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           ++ +   PF +L+ L+L  N               SL  L+ L+L +N+  +     L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYET------LDLESLSTLRTLDLNNNYVQE-----LLV 97

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS------GSLTRLGRL 227
             S+ TL  ++N+I    ++   +  +  + + L+ N  IT       G  +R+  L
Sbjct: 98  GPSIETLHAANNNI----SRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYL 149

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
            L    + L+ L+L  N+   +             +LK L+L  N     + P   +   
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224
           +T + L +N +     ++ L   + L+  DL GN     G+L   
Sbjct: 216 VTWISLRNNKL--VLIEKALRFSQNLEHFDLRGN-GFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207
           +   +  + K+  + D+    ++     +  ++  L LS N +        LA    L++
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62

Query: 208 LDLSGNFNITS----GSLTRLGRL 227
           L+LS N  +       SL+ L  L
Sbjct: 63  LNLSSN-VLYETLDLESLSTLRTL 85

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           ++ L    N  + +       S    +  K + L +N             + +  L L  
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218
           N I+     +  A+   L+ L+L  N  I  
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYN-FIYD 183

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ LDL  N    +        F S   +  ++L +N     I   L    +L    L  
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNIT 217
           N       +   +  + +Q +       +T
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           + + +F     L +LD+  N    + +      F  L  LK L +GDN      + +   
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDNDL--VYISHRAF 148

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN--FNITSGSLTRLGRLLR 229
           + L SL  L L   ++  S   + L++L  L VL L       I   S  RL RL  
Sbjct: 149 SGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +          L  L L       I +     SF  L +LK+L +    + D++ P    
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
             +LT+L ++  ++  +     + +L YL+ L+LS N    I    L  L RL
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 7e-10
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           LN   F  F  L+ L+L  N  + +       +F +L  L+ L L  N     ++P    
Sbjct: 47  LNQDEFASFPHLEELELNENIVSAV----EPGAFNNLFNLRTLGLRSNRL--KLIPLGVF 100

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
             L++LT L +S+N I          +L  L+ L++  N    I+  + + L  L
Sbjct: 101 TGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 11/104 (10%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTLILS 186
           L  L +     T +     Y +   L  L+ LNL  N    +I    L+ L  L  + L 
Sbjct: 226 LTSLSITHCNLTAV----PYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLV 280

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
              +           L YL+VL++SGN  +T+        +G L
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNL 322

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTS 179
                  L+ L+L  N  + I  +        L +L+ + L        + PY    L  
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGS----MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNY 297

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           L  L +S N +  +  +    ++  L+ L L  N
Sbjct: 298 LRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTL 177
           S+ H    LQ + L G     +       +F  L  L++LN+  N    + L     +++
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYLRVLNVSGNQL--TTLEESVFHSV 319

Query: 178 TSLTTLILSDNSI 190
            +L TLIL  N +
Sbjct: 320 GNLETLILDSNPL 332

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           SL      ++ LDL GN  + I             +L++LNL  N   +     L +L++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L TL L++N +      Q L     ++ L  + N    ++         +
Sbjct: 82  LRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSRGQGKKNI 125

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLNTLTSLTTL 183
            +  + + L  N  T + +       G   +++ L+L  N  +  +      +  +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 184 ILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGRL 227
            L  N I      +G      L+ LDLS N  +        S   +  +
Sbjct: 175 NLQYNFI---YDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWI 219

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 8e-08
 Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 13/111 (11%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
                 +Q LDL  N    +      +   S   L+ LNL  NF     +        L 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGRL 227
           TL LS N +  +       +   +  + L  N  +            L   
Sbjct: 195 TLDLSSNKL--AFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHF 242

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
            L    + L+ L+L  N+   +             +LK L+L  N     + P   +   
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224
           +T + L +N +     ++ L   + L+  DL GN     G+L   
Sbjct: 216 VTWISLRNNKL--VLIEKALRFSQNLEHFDLRGN-GFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           ++ L    N  + +       S    +  K + L +N             + +  L L  
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGS-LTRLGRL 227
           N I+     +  A+   L+ L+L  NF  ++       +L  L
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207
           +   +  + K+  + D+    ++     +  ++  L LS N +        LA    L++
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62

Query: 208 LDLSGNFNITS----GSLTRLGRL 227
           L+LS N  +       SL+ L  L
Sbjct: 63  LNLSSN-VLYETLDLESLSTLRTL 85

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 22/117 (18%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           ++ +   PF +L+ L+L  N               SL  L+ L+L +N+  +     L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYET------LDLESLSTLRTLDLNNNYVQE-----LLV 97

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS------GSLTRLGRL 227
             S+ TL  ++N+I    ++   +  +  + + L+ N  IT       G  +R+  L
Sbjct: 98  GPSIETLHAANNNI----SRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYL 149

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 6/100 (6%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ LDL  N    +        F S   +  ++L +N     I   L    +L    L  
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           N       +   +  + +Q +       +T  +       
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 5e-11
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ L+L GN  T I          +L +L  L +G N    + +  L  LT+L  L L++
Sbjct: 68  LEYLNLNGNQITDI------SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNE 119

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           ++I        LANL  +  L+L  N N++      ++T L  L
Sbjct: 120 DNISDI---SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
           +++      +L+ L++  N  + I          +L QL  L L +N   +  +  +  L
Sbjct: 257 DINAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           T+LTTL LS N I      + LA+L  +   D +  
Sbjct: 311 TNLTTLFLSQNHITDI---RPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 6e-10
 Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  L L  N    I          SL  L       N   D  +  +  +T L +L + +
Sbjct: 179 LYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGN 230

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           N I        LANL  L  L++  N  I+       LT+L  L
Sbjct: 231 NKITDL---SPLANLSQLTWLEIGTN-QISDINAVKDLTKLKML 270

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  L +  N  T +          +L QL  L +G N  +D  +  +  LT L  L +  
Sbjct: 223 LNSLKIGNNKITDL------SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           N I        L NL  L  L L+ N  + +  +  +G L
Sbjct: 275 NQISDI---SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGL 310

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 15/104 (14%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           +  L+L  N               ++  L  L + ++   D  +  +  LT L +L L+ 
Sbjct: 134 MYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNY 186

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           N IE       LA+L  L       N  IT      ++TRL  L
Sbjct: 187 NQIEDI---SPLASLTSLHYFTAYVN-QITDITPVANMTRLNSL 226

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 16/107 (14%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             E  R  L     T +       +   L+ +  L +         +  +  LT+L  L 
Sbjct: 21  LAEGIRAVLQKASVTDV------VTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           L+ N I        L+NL  L  L +  N  IT      +LT L  L
Sbjct: 73  LNGNQITDI---SPLSNLVKLTNLYIGTN-KITDISALQNLTNLREL 115

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTS 179
            F    +L+ L L  N    I       +F  +  L  L+LG+    + I       L +
Sbjct: 142 AFEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L  L L   +I   +    L  L  L+ L++SGN    I  GS   L  L
Sbjct: 198 LKYLNLGMCNI---KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTT 182
               + L+L  N    I  +    +F  L  L++L LG N  +   +     N L SL T
Sbjct: 74  PSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRN--SIRQIEVGAFNGLASLNT 127

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGN--FNITSGSLTRLGRLLR 229
           L L DN +           L  L+ L L  N   +I S +  R+  L+R
Sbjct: 128 LELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSL 180
           F     L+ L+L       +       +   L  L+ L +  N F   I P   + L+SL
Sbjct: 192 FEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSL 244

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRLLR 229
             L + ++ +     +     L  L  L+L+ N   ++     T L  L+ 
Sbjct: 245 KKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-L 174
           + +M    P   L+ L++ GN F  I       SF  L  LK L + ++     I     
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQV-SLIERNAF 262

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           + L SL  L L+ N++  S        LRYL  L L  N
Sbjct: 263 DGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTS 179
           FH    L++L +  +  + I  N    +F  L  L  LNL  N    S LP+     L  
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERN----AFDGLASLVELNLAHNNL--SSLPHDLFTPLRY 291

Query: 180 LTTLILSDNSI 190
           L  L L  N  
Sbjct: 292 LVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSL 180
           F    +L+ L L  N    I       +F  +  L+ L+LG+      I       L++L
Sbjct: 132 FVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
             L L+  ++   R    L  L  L  LDLSGN    I  GS   L  L
Sbjct: 188 RYLNLAMCNL---REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 12/115 (10%)

Query: 117 LNMSLFHPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           +    F+    L+RLDL      + I E     +F  L  L+ LNL      +  +P L 
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEG----AFEGLSNLRYLNLAMCNLRE--IPNLT 204

Query: 176 TLTSLTTLILSDNSIEGSRTKQG-LANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            L  L  L LS N +  S  + G    L +LQ L +  +    I   +   L  L
Sbjct: 205 PLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTT 182
               + L+L  N    I  N    SF  L+ L++L L  N  +   +     N L +L T
Sbjct: 63  STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRN--HIRTIEIGAFNGLANLNT 116

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGN--FNITSGSLTRLGRLLR 229
           L L DN +  +        L  L+ L L  N   +I S +  R+  L R
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSL 180
           F     L+ L+L       I       +   L +L  L+L  N    +I P     L  L
Sbjct: 181 FEGLSNLRYLNLAMCNLREI------PNLTPLIKLDELDLSGNHL-SAIRPGSFQGLMHL 233

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS------GSLTRLGRL 227
             L +  + I+    +    NL+ L  ++L+ N N+T         L  L R+
Sbjct: 234 QKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERI 284

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSL 180
             P  +L  LDL GN  + I       SF  L  L+ L +  +     I     + L SL
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSL 257

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
             + L+ N++           L +L+ + L  N
Sbjct: 258 VEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTS 179
           F     LQ+L +  +    I  N    +F +L+ L  +NL  N    ++LP+     L  
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERN----AFDNLQSLVEINLAHNNL--TLLPHDLFTPLHH 280

Query: 180 LTTLILSDNSI 190
           L  + L  N  
Sbjct: 281 LERIHLHHNPW 291

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 8e-11
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 15/115 (13%)

Query: 128 LQRLDLPGNWFTGIYENRAY---DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
           +  +D   N    +          +      +  +NL +N  +       +T + L+++ 
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 185 LSDNSIEG------SRTKQGLANLRYLQVLDLSGNF------NITSGSLTRLGRL 227
           L  N +            +   N   L  +DL  N       +  + +L  L  +
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 13/120 (10%)

Query: 115 LLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL 174
               ++     E++Q + +  N            S   +K+L ML    N      LP  
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTF---PVETSLQKMKKLGMLECLYNQLE-GKLPAF 349

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-------GSLTRLGRL 227
            +   L +L L+ N I              ++ L  + N  +          S++ +  +
Sbjct: 350 GSEIKLASLNLAYNQITEIP-ANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 16/142 (11%), Positives = 46/142 (32%), Gaps = 24/142 (16%)

Query: 96  QLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQ 155
           +   NE  ++     +      N+       +L  +++                  +L +
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLK------DLTDVEVYNCPNLTKLP----TFLKALPE 274

Query: 156 LKMLNLGDNFF--------NDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207
           ++++N+  N          +   L        +  + +  N+++    +  L  ++ L +
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

Query: 208 LDLSGNFNITS-----GSLTRL 224
           L+   N  +       GS  +L
Sbjct: 335 LECLYN-QLEGKLPAFGSEIKL 355

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 8/108 (7%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAY---DSFGSLKQLKMLNLGDNFFNDSILP--YL 174
            LF     L  ++L GN  T I +N      ++F +   L  ++L  N     +      
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT 222
            TL  L  + LS NS           N   L+   +    +       
Sbjct: 510 TTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 18/113 (15%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLNTLTSLTTLILS 186
           L  L+L  N  T I  N      G  +Q++ L+   N       +    +++ ++ +  S
Sbjct: 355 LASLNLAYNQITEIPAN----FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410

Query: 187 DNSIEGSRTKQ------GLANLRYLQVLDLSGNFNITS------GSLTRLGRL 227
            N I     K              +  ++LS N  I+        + + L  +
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSI 462

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 22/159 (13%)

Query: 75  SSDCCD--DWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLD 132
           + +        GV  N+  R V  LSL        +SG     +  ++      EL+ L 
Sbjct: 63  NKELDMWGAQPGVSLNSNGR-VTGLSLEG----FGASGRVPDAIGQLT------ELEVLA 111

Query: 133 LPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL--NTLTSLTTLILSDNSI 190
           L  +               +    +        +  + + Y      + L    ++ +  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 191 EGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRL 224
           + S  K+          +    N NIT        LT+L
Sbjct: 172 QKS-IKKSSRITLKDTQIGQLSN-NITFVSKAVMRLTKL 208

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 16/121 (13%), Positives = 40/121 (33%), Gaps = 25/121 (20%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL--------------- 171
           +  ++    N  T + +     +   L +L+   +G++ F    +               
Sbjct: 184 KDTQIGQLSNNITFVSK-----AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 172 ----PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
                  + L  LT + + +           L  L  +Q+++++ N  I+   L    + 
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 228 L 228
           L
Sbjct: 298 L 298

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 20/109 (18%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGD------NFFNDSILPYLNTLTSLT 181
           L  +DL  N F+            +   LK   + +      N         +    SLT
Sbjct: 515 LVGIDLSYNSFSKFPT-----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 182 TLILSDNSIEGSRTKQGL--ANLRYLQVLDLSGNFNITSGSLTRLGRLL 228
            L +  N I      + +       + VLD+  N    S  L+ +   +
Sbjct: 570 QLQIGSNDI------RKVNEKITPNISVLDIKDN-PNISIDLSYVCPYI 611

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 4/82 (4%)

Query: 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG---LANLRYL 205
           S  S  ++  L+L     +  +   +  LT L  L L  +  + +    G   ++     
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 206 QVLDLSGNFNITSGSLTRLGRL 227
           +        +     +    R 
Sbjct: 136 EQKQKMRM-HYQKTFVDYDPRE 156

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-L 174
           +   S+F     L  LD+                F  L  L++L +  N F ++ LP   
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN--FNITSGSLTRLGRL 227
             L +LT L LS   +E   +     +L  LQVL++S N  F++ +     L  L
Sbjct: 172 TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTS 179
           F   E+L+ LD   +    + E      F SL+ L  L++     +  +      N L+S
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHT--HTRVAFNGIFNGLSS 151

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L  L ++ NS + +        LR L  LDLS      ++  +   L  L
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 7/114 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LN 175
           L   +F    +L +L L  N  +         S      LK L+L  N      +     
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFN--GVITMSSNFL 98

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            L  L  L    ++++         +LR L  LD+S        +G    L  L
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 13/111 (11%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP--YLNTLTSLTT 182
                RL+L  N    +        F  L QL  L+L  N  +            TSL  
Sbjct: 27  PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRLLR 229
           L LS N +    +      L  L+ LD   + N+           L  L+ 
Sbjct: 83  LDLSFNGVITMSS--NFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIY 130

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTS 179
           +F     L  LDL       +       +F SL  L++LN+  N F  S+  +    L S
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNS 224

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           L  L  S N I  S+ ++       L  L+L+ N
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +          LQ L L  +    I      D+F SL  L+ L+L DN  +     +   
Sbjct: 41  IGHGDLRACANLQVLILKSSRINTIEG----DAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218
           L+SL  L L  N  +         NL  LQ L +      + 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--- 173
              +++   E+++R+ +  +    +  +        LK L+ L+L +N   +  L     
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCS----FSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 174 LNTLTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGN 213
                SL TL+LS N +    +T + L  L+ L  LD+S N
Sbjct: 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLN 175
           +    F+    L+ LDL  N  + +    +   FG L  LK LNL  N +    +     
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSL----SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            LT+L TL + +        +   A L  L  L++      N  S SL  +  +
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 9e-08
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L N +    +  LQ L L  N    +   +  +   +LK L  L++  N F+  +     
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSM--QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN-FNITSGSLTRLGRL 227
               +  L LS   I            + L+VLD+S N  +  S  L RL  L
Sbjct: 408 WPEKMRFLNLSSTGI----RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 7/115 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +    F     L  L++               S  S++ +  L L  +     +  + + 
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQ----SLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 177 LTSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR 229
           L+S+  L L D ++                ++ L   G+  +T  S   L +LLR
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLR 248

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
            + L+ LD+  N                L +L+ L +  N      LP  +    L  + 
Sbjct: 430 PQTLEVLDVSNNNLDSFSLF--------LPRLQELYISRNKL--KTLPDASLFPVLLVMK 479

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           +S N ++ S        L  LQ + L  N
Sbjct: 480 ISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 7/101 (6%)

Query: 116 LLNMSLFHPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL 174
           L   SLF     LQ L +     F+ I        F  L  L  L +      +     L
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRR----IDFAGLTSLNELEIKALSLRNYQSQSL 168

Query: 175 NTLTSLTTLILSDNSIE--GSRTKQGLANLRYLQVLDLSGN 213
            ++  +  L L  +            L+++RYL++ D +  
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 4e-10
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  LD   N    +      ++FG+  +L  L L  N   +    +      +  L  S 
Sbjct: 575 LGLLDCVHNKVRHL------EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218
           N ++         ++  +  +D S N  I S
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYN-KIGS 658

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 9e-10
 Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 18/119 (15%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND---------SILP 172
           +   ++L  ++L              D    L +L+ LN+  N              +  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 173 YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
             +T   +    +  N++E       L  +  L +LD   N  +      G+  +L  L
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDL 600

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAY---DSFGSLKQLKMLNLGDNFFNDSILP---Y 173
            LF     +  + L  N  T I EN       ++ +   L  ++L  N      L     
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFR 748

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTR 223
             TL  L+ + +S N    S       N   L+   +    +     + R
Sbjct: 749 ATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%)

Query: 128 LQRLDLPGNWFTGIYENR-AYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
           +  +D   N       N               + L  N           T + ++T+ILS
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 187 DNSIE------GSRTKQGLANLRYLQVLDLSGNF------NITSGSLTRLGRL 227
           +N +                N   L  +DL  N       +  + +L  L  +
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFF-----NDSILPYL 174
                 ++++ L    N    I       +  S+  +  ++   N       N S     
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYI---PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218
               + +T+ LS N I+   T+   A    +  + LS N  +TS
Sbjct: 670 YKGINASTVTLSYNEIQKFPTEL-FATGSPISTIILSNN-LMTS 711

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 16/108 (14%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNL------GDNFFNDSILPYLNTLTSLT 181
           L  +D+  N F+            +  QLK   +        N         + T  SL 
Sbjct: 755 LSNMDVSYNCFSSFPT-----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR 229
            L +  N I     K        L +LD++ N    S  +T +   + 
Sbjct: 810 QLQIGSNDIRKVDEK----LTPQLYILDIADN-PNISIDVTSVCPYIE 852

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           +  L L G    G       D+ G L +LK+L+ G +    S   + +   +        
Sbjct: 325 VTGLSLAGFGAKGR----VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGN 213
           + I     K  L   + L + DL  +
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQD 406

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 30/218 (13%), Positives = 62/218 (28%), Gaps = 42/218 (19%)

Query: 39  TERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCD--DWEGVKCNATTRRVMQ 96
            +  AL  I       +   Y   I  +    +   + +     D  GV  +   R V  
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGR-VTG 327

Query: 97  LSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTG---------------- 140
           LSL        + G     +  ++      EL+ L    +  T                 
Sbjct: 328 LSLA----GFGAKGRVPDAIGQLT------ELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 141 -----IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRT 195
                I  +         ++L + +L  +  N    P +  +   + + L D  I     
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 196 K-----QGLANLRYLQVLDLSGNFNITSGSLTRLGRLL 228
           +     + +  L  LQ++  + +   T  ++       
Sbjct: 436 RITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDA 472

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 21/158 (13%), Positives = 41/158 (25%), Gaps = 35/158 (22%)

Query: 99  LNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKM 158
              T   +        +          + L   DL  +      E         +K+   
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE------MKPIKKDSR 422

Query: 159 LNLGDNFFND------SILPYLNTLTSLTTLILSDNSIEG------------------SR 194
           ++L D    +       I   +  LT L  +  +++                        
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 195 TKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGRL 227
            +   +NL+ L  ++L    N+T        L  L  L
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L + +    +  L  +DL  N    I     Y  F  +++L+ L + +N    ++  Y  
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            + +L  L LS N +     ++       L+ L L  N    +   +   L  L
Sbjct: 299 PIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP--YL 174
           L  +L   F +++ L+L       I       +F     ++ L +G N      LP    
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAI--RYLPPHVF 119

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
             +  LT L+L  N +  S  +    N   L  L +S N    I   +      L
Sbjct: 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 16/121 (13%)

Query: 116 LLNMSLFHPFEE-----LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170
           +    ++  FE+      + +    +    +          S +Q+++LNL D    +  
Sbjct: 36  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEE-- 89

Query: 171 LPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGR 226
           +         ++  L +  N+I          N+  L VL L  N   ++  G      +
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 227 L 227
           L
Sbjct: 149 L 149

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 11/115 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           ++   F     +Q+L +  N    +        F ++  L +L L  N    S LP    
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYL----PPHVFQNVPLLTVLVLERNDL--SSLPRGIF 143

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           +    LTTL +S+N++E             LQ L LS N   ++    +  L   
Sbjct: 144 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 27/129 (20%), Positives = 39/129 (30%), Gaps = 28/129 (21%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLN 175
           +    F     LQ L L  N  T +           +  L   N+  N  +  +I   + 
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLLSTLAIPIAVE 214

Query: 176 TL---------------TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITS 218
            L                 LT L L  N++        L N   L  +DLS N    I  
Sbjct: 215 ELDASHNSINVVRGPVNVELTILKLQHNNL---TDTAWLLNYPGLVEVDLSYNELEKIMY 271

Query: 219 GSLTRLGRL 227
               ++ RL
Sbjct: 272 HPFVKMQRL 280

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
             P   L+ LDL  N    +  N          +L+ L L  N      L  L+T  +L 
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSI--VTLK-LSTHHTLK 348

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNI 216
            L LS N  + +  +    N+    V D   +  I
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 16/104 (15%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L +++   N  T I          +L +L  + + +N   D  +  L  LT+LT L L +
Sbjct: 70  LTQINFSNNQLTDI------TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFN 121

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           N I        L NL  L  L+LS N  I+       LT L +L
Sbjct: 122 NQITDI---DPLKNLTNLNRLELSSN-TISDISALSGLTSLQQL 161

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 16/105 (15%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
            L  L+L  N    I          +LK L  L L  N  +D  +  +++LT L  L   
Sbjct: 288 ALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 339

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           +N +        LANL  +  L    N  I+      +LTR+ +L
Sbjct: 340 NNKVSDV---SSLANLTNINWLSAGHN-QISDLTPLANLTRITQL 380

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L ++        L  LDL  N  + +           L +L  L LG N  ++  +  L 
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISN--ISPLA 284

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
            LT+LT L L++N +E       ++NL+ L  L L  N NI+      SLT+L RL
Sbjct: 285 GLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRL 336

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  L L  N  + I          SL +L+ L   +N  +D  +  L  LT++  L    
Sbjct: 311 LTYLTLYFNNISDI------SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           N I        LANL  +  L L+     T+  +     +
Sbjct: 363 NQISDLT---PLANLTRITQLGLNDQ-AWTNAPVNYKANV 398

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 17/104 (16%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           LQ+L   GN  T +          +L  L+ L++  N  +D  +  L  LT+L +LI ++
Sbjct: 158 LQQLSF-GNQVTDL------KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 208

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           N I        L  L  L  L L+GN  +       SLT L  L
Sbjct: 209 NQISDI---TPLGILTNLDELSLNGN-QLKDIGTLASLTNLTDL 248

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 16/107 (14%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             E  +  L     T         S   L Q+  L           +  +  L +LT + 
Sbjct: 23  LAEKMKTVLGKTNVTDT------VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
            S+N +        L NL  L  + ++ N  I       +LT L  L
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILMNNN-QIADITPLANLTNLTGL 117

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 17/104 (16%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L RL+L  N  + I       +   L  L+ L+ G+     + L  L  LT+L  L +S 
Sbjct: 136 LNRLELSSNTISDI------SALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISS 186

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           N +        LA L  L+ L  + N  I+     G LT L  L
Sbjct: 187 NKV---SDISVLAKLTNLESLIATNN-QISDITPLGILTNLDEL 226

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL 208
           +  +L +     LG     D        L  +TTL      I+   +  G+  L  L  +
Sbjct: 19  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 209 DLSGNFNITS----GSLTRLGRL 227
           + S N  +T      +LT+L  +
Sbjct: 74  NFSNN-QLTDITPLKNLTKLVDI 95

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 109 SGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND 168
               S       L   F  L+ L L       +       +   L +LK L L +N    
Sbjct: 32  DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFG 85

Query: 169 SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
            +      L +LT L LS N ++   T + L  L  L+ LDL   
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYL 174
           L+++S      +L++L+L  N   G  +         L  L  LNL  N   D S L  L
Sbjct: 61  LISVSNLPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNKLKDISTLEPL 116

Query: 175 NTLTSLTTLILSDNSI---EGSRTKQGLANLRYLQVLD 209
             L  L +L L +  +      R       L  L  LD
Sbjct: 117 KKLECLKSLDLFNCEVTNLNDYRESV-FKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              ++ L L         + +          L+ L+L +       +  L  L  L  L 
Sbjct: 23  PAAVRELVLDNC---KSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLE 77

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-GSLTRLGRL 227
           LS+N I G         L  L  L+LSGN  +    +L  L +L
Sbjct: 78  LSENRIFGGLDMLA-EKLPNLTHLNLSGN-KLKDISTLEPLKKL 119

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 5e-09
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L ++      + L  L L  N    +       S   LK+LK L+L  N  +D  +  L 
Sbjct: 77  LTDIKPLTNLKNLGWLFLDENKIKDL------SSLKDLKKLKSLSLEHNGISD--INGLV 128

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218
            L  L +L L +N I        L+ L  L  L L  N  I+ 
Sbjct: 129 HLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDN-QISD 167

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 1e-08
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
           +++      +L+ L L  N  T I           L +L  L+L DN  +D  +  L  L
Sbjct: 123 DINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD--IVPLAGL 174

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLL 228
           T L  L LS N I      + LA L+ L VL+L       +  +     L+
Sbjct: 175 TKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQ-ECLNKPINHQSNLV 221

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.2 bits (127), Expect = 2e-08
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 16/107 (14%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
           F E  + +L     T         +   L  +  +   ++      +  +  L ++T L 
Sbjct: 20  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           L+ N +      + L NL+ L  L L  N  I        L +L  L
Sbjct: 72  LNGNKL---TDIKPLTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSL 114

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L + +    +  L  +DL  N    I     Y  F  +++L+ L + +N    ++  Y  
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            + +L  L LS N +     ++       L+ L L  N    +   +   L  L
Sbjct: 293 PIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP--YL 174
           L  +L   F +++ L+L       I       +F     ++ L +G N      LP    
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAI--RYLPPHVF 113

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
             +  LT L+L  N +  S  +    N   L  L +S N    I   +      L
Sbjct: 114 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 11/115 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           ++   F     +Q+L +  N    +        F ++  L +L L  N    S LP    
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPP----HVFQNVPLLTVLVLERNDL--SSLPRGIF 137

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           +    LTTL +S+N++E             LQ L LS N   ++    +  L   
Sbjct: 138 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 27/129 (20%), Positives = 39/129 (30%), Gaps = 28/129 (21%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLN 175
           +    F     LQ L L  N  T +           +  L   N+  N  +  +I   + 
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLLSTLAIPIAVE 208

Query: 176 TL---------------TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITS 218
            L                 LT L L  N++        L N   L  +DLS N    I  
Sbjct: 209 ELDASHNSINVVRGPVNVELTILKLQHNNL---TDTAWLLNYPGLVEVDLSYNELEKIMY 265

Query: 219 GSLTRLGRL 227
               ++ RL
Sbjct: 266 HPFVKMQRL 274

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
             P   L+ LDL  N    +  N          +L+ L L  N      L  L+T  +L 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSI--VTLK-LSTHHTLK 342

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDL 210
            L LS N  + +  +    N+    V D 
Sbjct: 343 NLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 12/115 (10%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +    F   + L  L L  N  + I       +F  L +L+ L L  N      LP    
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQL--KELP-EKM 119

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN----FNITSGSLTRLGRL 227
             +L  L + +N I     K     L  + V++L  N      I +G+   + +L
Sbjct: 120 PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTT 182
            + LQ L +  N  T + ++     F  L Q+ ++ LG N    S +       +  L+ 
Sbjct: 120 PKTLQELRVHENEITKVRKS----VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
           + ++D +I  +   QGL     L  L L GN  IT     SL  L  L
Sbjct: 176 IRIADTNI--TTIPQGL--PPSLTELHLDGN-KITKVDAASLKGLNNL 218

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTT 182
              L  L L GN  T +       S   L  L  L L  N    S +    L     L  
Sbjct: 191 PPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSI--SAVDNGSLANTPHLRE 244

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218
           L L++N +   +   GLA+ +Y+QV+ L  N NI++
Sbjct: 245 LHLNNNKL--VKVPGGLADHKYIQVVYLHNN-NISA 277

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 14/115 (12%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
                 L +L L  N  + +       S  +   L+ L+L +N     +   L     + 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKL-VKVPGGLADHKYIQ 266

Query: 182 TLILSDNSIE-----GSRTKQGLANLRYLQVLDLSGN----FNITSGSLTRLGRL 227
            + L +N+I                      + L  N    + I   +   +   
Sbjct: 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 12/106 (11%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTL 183
             +   LDL  N  T I +      F +LK L  L L +N  +  I P     L  L  L
Sbjct: 51  PPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERL 105

Query: 184 ILSDNSIEGSRTKQGLANLRYLQVLDLSGN--FNITSGSLTRLGRL 227
            LS N ++    K      + LQ L +  N    +       L ++
Sbjct: 106 YLSKNQLKELPEKM----PKTLQELRVHENEITKVRKSVFNGLNQM 147

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 12/99 (12%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFF----NDSILP--YLN 175
                 L+ L L  N    +            K ++++ L +N      ++   P  Y  
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGG-----LADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290

Query: 176 TLTSLTTLILSDNSIEGSRTKQGL-ANLRYLQVLDLSGN 213
              S + + L  N ++    +      +     + L   
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTT 182
            E L  L L  N    I             +L  L LG N     ++    L+ L +L  
Sbjct: 192 PETLNELHLDHNKIQAIELE----DLLRYSKLYRLGLGHN--QIRMIENGSLSFLPTLRE 245

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRLLR 229
           L L +N +  SR   GL +L+ LQV+ L  N    +       +G  ++
Sbjct: 246 LHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 29/127 (22%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN----------FFNDSILPYL 174
              L  L +  N    + +      F  L+ +  + +G N           F+   L YL
Sbjct: 122 PSSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177

Query: 175 ------------NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGS 220
                       +   +L  L L  N I+ +   + L     L  L L  N    I +GS
Sbjct: 178 RISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 221 LTRLGRL 227
           L+ L  L
Sbjct: 237 LSFLPTL 243

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           F   + L  L L  N  + I+E     +F  L++L+ L +  N      +P  N  +SL 
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNHL--VEIP-PNLPSSLV 126

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSL 221
            L + DN I     K   + LR +  +++ GN  + +   
Sbjct: 127 ELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN-PLENSGF 164

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTL 183
             +   LDL  N  + + ++     F  L+ L  L L +N  +  I     + L  L  L
Sbjct: 53  SPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKL 107

Query: 184 ILSDNSIEGSRTKQGLANLRYLQVLDLSGN--FNITSGSLTRLGRL 227
            +S N +        L     L  L +  N    +  G  + L  +
Sbjct: 108 YISKNHL--VEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 12/99 (12%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND------SILPYLN 175
                 L+ L L  N  + +           LK L+++ L  N            + +  
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAG-----LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 176 TLTSLTTLILSDNSIEGSRTKQGL-ANLRYLQVLDLSGN 213
                  + L +N +     +      +     +     
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 31/105 (29%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 109 SGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND 168
             S S       L   FEEL+ L       T I       +   L +LK L L DN  + 
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSG 78

Query: 169 SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
            +        +LT L LS N I+   T + L  L  L+ LDL   
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             +++ L L  +      E +        ++L+ L+  +       +  L  L  L  L 
Sbjct: 16  PSDVKELVLDNS---RSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLE 70

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNF 214
           LSDN + G            L  L+LSGN 
Sbjct: 71  LSDNRVSGGLEVLA-EKCPNLTHLNLSGNK 99

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           LN + F   ++LQ L +       +  N     F  L  L +L L  N F    L     
Sbjct: 45  LNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIILKLDYNQF--LQLETGAF 99

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGL-ANLRYLQVLDLSGNFNITS 218
           N L +L  L L+  +++G+         L  L++L L  N NI  
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKK 143

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTS 179
           F     L +L+L  N+   I        F +L +L++L+L  N      L       L +
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSR----MFENLDKLEVLDLSYNHI--RALGDQSFLGLPN 372

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           L  L L  N ++ S        L  LQ + L  N
Sbjct: 373 LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 29/114 (25%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LN 175
           +  + F     L  L L  N    I       +F  L  L+ L+L DN    S+ P   +
Sbjct: 47  VPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
            L  L TL L    ++          L  LQ L L  N    +   +   LG L
Sbjct: 103 GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 11/111 (9%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTS 179
           LF     LQ L L  N    +      D+F  L  L  L L  N    S+       L S
Sbjct: 124 LFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHS 178

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
           L  L+L  N +          +L  L  L L  N N+++    +L  L  L
Sbjct: 179 LDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRAL 227

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTS 179
            F     L  L L GN  + + E     +F  L  L  L L  N     + P+    L  
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGR 202

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           L TL L  N++  +   + LA LR LQ L L+ N
Sbjct: 203 LMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215
            + + L  N  +           +LT L L  N +           L  L+ LDLS N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQ 92

Query: 216 ITS---GSLTRLGRL 227
           + S    +   LGRL
Sbjct: 93  LRSVDPATFHGLGRL 107

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN--DSILPY 173
           +++M           LD   N  T       +++ G L +L+ L L  N       I   
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTV----FENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR 229
              + SL  L +S NS+     K   +  + L  L++S N  +T      L   ++
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPRIK 424

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L  S      +L+ L +  N    +        F   ++L+ L+L  N      +   + 
Sbjct: 36  LWTSDILSLSKLRILIISHNRIQYLDI----SVFKFNQELEYLDLSHNKL--VKIS-CHP 88

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
             +L  L LS N+ +     +   N+  L+ L LS   ++   S+  +  L
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPIAHL 138

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 9/112 (8%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLN 175
           L++S+F   +EL+ LDL  N    I       S      LK L+L  N F+   I     
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKI-------SCHPTVNLKHLDLSFNAFDALPICKEFG 112

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
            ++ L  L LS   +E   +   +A+L   +VL + G           L   
Sbjct: 113 NMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSL 180
           ++  F  +   +   +    +           +     L+  +N   D++      LT L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMV----HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 181 TTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGN 213
            TLIL  N ++  S+  +    ++ LQ LD+S N
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLNTLTSL 180
                EL+ L L  N    +  ++  +    +K L+ L++  N  +        +   SL
Sbjct: 344 CGHLTELETLILQMNQLKEL--SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGRL 227
            +L +S N +  +  +        ++VLDL  N  I S       L  L  L
Sbjct: 402 LSLNMSSNILTDTIFRCLPPR---IKVLDLHSN-KIKSIPKQVVKLEALQEL 449

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 25/115 (21%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT--- 176
            +    + LQ+LD+  N  +              K L  LN+  N   D+I   L     
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYD---EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK 424

Query: 177 ------------------LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
                             L +L  L ++ N ++ S        L  LQ + L  N
Sbjct: 425 VLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
            HP   L+ LDL  N F  +   +    FG++ QLK L L       S +  +  L    
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKE---FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215
            L++   +      K+    L+      L   F 
Sbjct: 143 VLLVLGETY---GEKEDPEGLQDFNTESLHIVFP 173

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSL 180
           L    ++   +D   N    +      D F  L++LK L + +N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           T LIL++NS+        LA+L+ L  L +  N
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLIL 185
              + LDL G     I EN       +L Q   ++  DN      L     L  L TL++
Sbjct: 19  VRDRELDLRGYKIPVI-ENLG----ATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLV 71

Query: 186 SDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-GSLTRLGRL 227
           ++N I     +     L  L  L L+ N ++   G L  L  L
Sbjct: 72  NNNRIC-RIGEGLDQALPDLTELILTNN-SLVELGDLDPLASL 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLNTLTSL 180
           F     L+ L +  N    I E        +L  L  L L +N   +   L  L +L SL
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 181 TTLILSDN---SIEGSRTKQGLANLRYLQVLD 209
           T L +  N   + +  R    +  +  ++VLD
Sbjct: 116 TYLCILRNPVTNKKHYRLYV-IYKVPQVRVLD 146

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
           ++      + L  L L  N    +       S   LK+LK L+L  N  +D  +  L  L
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDL------SSLKDLKKLKSLSLEHNGISD--INGLVHL 133

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218
             L +L L +N I        L+ L  L  L L  N  I+ 
Sbjct: 134 PQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDN-QISD 170

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 16/107 (14%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
           F E  + +L     T         +   L  +  +   ++      +  +  L ++T L 
Sbjct: 23  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           L+ N +      + LANL+ L  L L  N  +        L +L  L
Sbjct: 75  LNGNKL---TDIKPLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSL 117

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 16/114 (14%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
           +    +    + ++    +    +           L  +  L L  N   D  +  L  L
Sbjct: 38  DAVTQNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTD--IKPLANL 89

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
            +L  L L +N +   +    L +L+ L+ L L  N  I+       L +L  L
Sbjct: 90  KNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHN-GISDINGLVHLPQLESL 139

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
           +  +    NL      D      N L S+  +I +++ I+   + QG+  L  +  L L+
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 212 GN 213
           GN
Sbjct: 77  GN 78

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           ++ S       LQ L L  N    I E+    SF SL  L+ L+L  N+   S L     
Sbjct: 67  ISNSDLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNYL--SNLSSSWF 120

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
             L+SLT L L  N  +        ++L  LQ+L +      T         L  L
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           +    F     L+ LDL  N+ + +    +   F  L  L  LNL  N +  ++      
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNL----SSSWFKPLSSLTFLNLLGNPY-KTLGETSLF 145

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
           + LT L  L + +        ++  A L +L+ L++  + ++ S    SL  +  +
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNV 200

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 6/101 (5%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENR----AYDSFGSLKQLKMLNLGDNFFNDSILP 172
           L          ++ L+L        + +       +S       + + + D      ++ 
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 173 YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
            LN ++ L  L  S N ++ S        L  LQ + L  N
Sbjct: 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 26/131 (19%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDS----------------------FGSLK 154
           L+ S F P   L  L+L GN +  + E   +                        F  L 
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 155 QLKMLNLGDNFFNDSILPY-LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
            L+ L +  +    S  P  L ++ +++ LIL          +  +     ++ L+L   
Sbjct: 175 FLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT 232

Query: 214 FNITSGSLTRL 224
            ++ +   + L
Sbjct: 233 -DLDTFHFSEL 242

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 16/116 (13%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           + +       + +  L   G   T I      +    L  L  L L DN   D  L  L 
Sbjct: 31  VTDTVTQADLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITD--LAPLK 82

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
            LT +T L LS N +   +    +A L+ ++ LDL+    IT       L+ L  L
Sbjct: 83  NLTKITELELSGNPL---KNVSAIAGLQSIKTLDLTST-QITDVTPLAGLSNLQVL 134

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 12/101 (11%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           LQ L +     + +          +L +L  L   DN  +D  +  L +L +L  + L +
Sbjct: 153 LQYLSIGNAQVSDL------TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKN 204

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLL 228
           N I        LAN   L ++ L+    IT+  +     L+
Sbjct: 205 NQIS---DVSPLANTSNLFIVTLTNQ-TITNQPVFYNNNLV 241

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 11/112 (9%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           + +++       LQ L L  N  T I           L  L+ L++G+   +D  L  L 
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVSD--LTPLA 170

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
            L+ LTTL   DN I        LA+L  L  + L  N       L     L
Sbjct: 171 NLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNNQISDVSPLANTSNL 219

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 9e-08
 Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 3/100 (3%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN---DSILPY 173
            +      F  L  LDL  N   G     +         L++L L +             
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
                 L  L LS NS+  +           L  L+LS  
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           +L     +LQ LDL  N            S     QL  LNL        +   L     
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFTGL-KQVPKGL--PAK 275

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           L+ L LS N ++ + +   L     +  L L GN
Sbjct: 276 LSVLDLSYNRLDRNPSPDELPQ---VGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 93  RVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGS 152
           RV+ +S  + +       +G+A    +    P  +L  L+L    +       A      
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGP--DLNILNLRNVSWATRDAWLAELQQWL 147

Query: 153 LKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG---LANLRYLQVLD 209
              LK+L++      +     +    +L+TL LSDN   G R             LQVL 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 210 LSGN 213
           L   
Sbjct: 208 LRNA 211

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L RL L  N           DS   LK L++L++ +N      +  L  L+ L  L L  
Sbjct: 108 LSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHG 159

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           N I       GL  L+ +  +DL+G     +  +     L
Sbjct: 160 NEIT---NTGGLTRLKKVNWIDLTGQ-KCVNEPVKYQPEL 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 17/104 (16%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ L +  N    +       +      L  L L +N   D     L  L +L  L + +
Sbjct: 87  LEELSVNRNRLKNL-------NGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRN 137

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           N ++   +   L  L  L+VLDL GN  IT+      L ++  +
Sbjct: 138 NKLK---SIVMLGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWI 177

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 10/80 (12%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
            L      NLG     D  L     L+ +      +++I   ++  G+     L+ L LS
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNI---QSLAGMQFFTNLKELHLS 71

Query: 212 GNFNITS----GSLTRLGRL 227
            N  I+       LT+L  L
Sbjct: 72  HN-QISDLSPLKDLTKLEEL 90

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 17/107 (15%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              +Q  +   +    +              LK L+L  N  +D  L  L  LT L  L 
Sbjct: 40  LSGVQNFNGDNSNIQSL------AGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELS 91

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           ++ N +   +   G+ +   L  L L  N  +        L  L  L
Sbjct: 92  VNRNRL---KNLNGIPSAC-LSRLFLDNN-ELRDTDSLIHLKNLEIL 133

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
            +  + L L  N    I       S   ++ L++L+LG N     I        +L  L 
Sbjct: 47  LKACKHLALSTNNIEKI------SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELW 99

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           +S N I    +  G+  L  L+VL +S N     G + +L  L
Sbjct: 100 ISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
            L+ L L  N    I EN           L+ L +  N      L  +  L +L  L +S
Sbjct: 71  NLRILSLGRNLIKKI-EN----LDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMS 123

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGN 213
           +N I        LA L  L+ L L+GN
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 141 IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200
           I+E R        ++++ L+         +   L+TL +   L LS N+IE       L+
Sbjct: 13  IFEERKSVVATEAEKVE-LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE---KISSLS 67

Query: 201 NLRYLQVLDLSGNFNITS 218
            +  L++L L  N  I  
Sbjct: 68  GMENLRILSLGRN-LIKK 84

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLNTLTS 179
           L    + L+ L +  N    +           L  L++L + +N   +   +  L  L  
Sbjct: 88  LDAVADTLEELWISYNQIASL------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 180 LTTLILSDNSIEGSRTKQG---------LANLRYLQVLD 209
           L  L+L+ N +     +           +  L  L+ LD
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 12/116 (10%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           +    +     L  L L GN    +    A  +F  L  L+ L   +   N + L    +
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVET--NLASLENFPI 120

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
             L +L  L ++ N I+  +  +  +NL  L+ LDLS N  I S     L  L ++
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM 175

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLNTLTSL 180
           F     LQ+L         +         G LK LK LN+  N      LP Y + LT+L
Sbjct: 96  FSGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 181 TTLILSDNSIE--GSRTKQGLANLRYLQV-LDLSGNFNITS 218
             L LS N I+       + L  +  L + LDLS N  +  
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNF 191

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 20/110 (18%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLIL 185
            + LDL  N    +       SF S  +L++L+L         +      +L+ L+TLIL
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLIL 83

Query: 186 SDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITS------GSLTRLGRL 227
           + N I+        GL++L+    L      N+ S      G L  L  L
Sbjct: 84  TGNPIQSLALGAFSGLSSLQK---LVAVET-NLASLENFPIGHLKTLKEL 129

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 16/116 (13%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
            +++   P+  L +L+L     T +         G+L  L  L+L  N    S+     T
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELTKL------QVDGTLPVLGTLDLSHNQLQ-SLPLLGQT 98

Query: 177 LTSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
           L +LT L +S N +        +GL  L+    L L GN  + +   G LT   +L
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQE---LYLKGN-ELKTLPPGLLTPTPKL 150

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLT 178
                 ELQ L L GN    +             +L+ L+L +N  N + LP   LN L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSLANN--NLTELPAGLLNGLE 172

Query: 179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           +L TL+L +NS+      +G      L    L GN
Sbjct: 173 NLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGN 205

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 122 FHPFEELQRLDLPGNW-FTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLNTLTS 179
           F     + R+ +  +     +  +    SF +L ++  + + +      I P  L  L  
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRLLR 229
           L  L + +  ++       + +     +L+++ N  +TS    +   L     
Sbjct: 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 19/117 (16%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP--YLNTLTS 179
                 L  L L  N    I    + ++F  +  L+ L+L  N  +   L     + L +
Sbjct: 60  PTRLTNLHSLLLSHNHLNFI----SSEAFVPVPNLRYLDLSSN--HLHTLDEFLFSDLQA 113

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---------GSLTRLGRL 227
           L  L+L +N I          ++  LQ L LS N  I+            L +L  L
Sbjct: 114 LEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLL 168

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSL 180
           F P   L+ LDL  N    + E      F  L+ L++L L +N     +       +  L
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQL 138

Query: 181 TTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRLLR 229
             L LS N I        +    L  L +LDLS N    +    L +L   ++
Sbjct: 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 22/114 (19%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN---------FFNDSILPYLNTLT 178
           L+ L L  N    +       S  SL +L+ L++              +         L 
Sbjct: 129 LETLTLARNPLRALPA-----SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGRL 227
           +L +L L    I        +ANL+ L+ L +  +  +++       L +L  L
Sbjct: 184 NLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEEL 234

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ L +  +  + +       +   L +L+ L+L       +  P       L  LIL D
Sbjct: 208 LKSLKIRNSPLSALGP-----AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 188 -NSIEGSRTK--QGLANLRYLQVLDLSGNFNITS-----GSLTRLGRLL 228
            +++          +  L  L+ LDL G  N++        L     +L
Sbjct: 263 CSNL----LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 12/95 (12%)

Query: 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLIL 185
                L+L         +         L  L+ + +        +   +     L TL L
Sbjct: 81  PGRVALELRSVPLPQFPD-----QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 186 SDNSIEGSRTK--QGLANLRYLQVLDLSGNFNITS 218
           + N +          +A+L  L+ L +     +T 
Sbjct: 135 ARNPL----RALPASIASLNRLRELSIRACPELTE 165

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 22/114 (19%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTLILS 186
           LQ + +       + +     +      L+ L L  N      LP  + +L  L  L + 
Sbjct: 106 LQHMTIDAAGLMELPD-----TMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIR 158

Query: 187 DN--------SIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGRL 227
                      +  +        L  LQ L L     I S      +L  L  L
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSL 211

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTS 179
           F P+++L+R+DL  N  + +    A D+F  L+ L  L L  N    + LP      L S
Sbjct: 52  FSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGN--KITELPKSLFEGLFS 105

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGRL 227
           L  L+L+ N I          +L  L +L L  N    I  G+ + L  +
Sbjct: 106 LQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLILS 186
             + L  N    I       +F   K+L+ ++L +N    S L       L SL +L+L 
Sbjct: 35  TEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLY 88

Query: 187 DNSIEG--SRTKQGLANLRYLQVLDLSGNFNITS------GSLTRLGRL 227
            N I        +GL +L+    L L+ N  I          L  L  L
Sbjct: 89  GNKITELPKSLFEGLFSLQL---LLLNAN-KINCLRVDAFQDLHNLNLL 133

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-NTLTSL 180
           F     L  L L GN  T +        F  L  L++L L  N  N  +       L +L
Sbjct: 76  FQGLRSLNSLVLYGNKITEL----PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNL 130

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
             L L DN ++ +  K   + LR +Q + L+ N
Sbjct: 131 NLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 16/116 (13%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND----------SILPYLNTL 177
           ++ + L GN           ++  S K L++    D F              +L  L   
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 178 TSLTTLILSDNSIEGSRTKQGLANL----RYLQVLDLSGNFNITSGSLTRLGRLLR 229
             L T+ LSDN+  G   ++ L +       L+ L L  N  +   +  ++ R L+
Sbjct: 94  PKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQ 147

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 15/114 (13%)

Query: 128 LQRLDLPGNWFT--GIYENRAYDSFGSLKQLKMLNLGDNFFND----SILPYLNTLTSLT 181
           L  + +  N     GI E+   +     ++LK+L+L DN F      ++   L +  +L 
Sbjct: 189 LHTVKMVQNGIRPEGI-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 182 TLILSDNSIEGSRTKQGLANL------RYLQVLDLSGNFNITSGSLTRLGRLLR 229
            L L+D  +  +R    + +         LQ L L  N  I   ++  L  ++ 
Sbjct: 248 ELGLNDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVID 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 14/86 (16%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ L + GN  T +             +LK L +  N    + LP     + L +L +  
Sbjct: 223 LKELIVSGNRLTSL--------PVLPSELKELMVSGNRL--TSLP--MLPSGLLSLSVYR 270

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGN 213
           N +  +R  + L +L     ++L GN
Sbjct: 271 NQL--TRLPESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 23/105 (21%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             EL+ L++ GN  T +           L +L + +          LP L   + L  L 
Sbjct: 80  PPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTH-----LPAL--PSGLCKLW 127

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRL 224
           +  N +              LQ L +S N  + S       L +L
Sbjct: 128 IFGNQLTSLP-----VLPPGLQELSVSDN-QLASLPALPSELCKL 166

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 23/105 (21%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              +  L +P N  T +             +L+ L +  N    S+      L  L+   
Sbjct: 60  PAHITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFS 110

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRL 224
                +         A    L  L + GN  +TS       L  L
Sbjct: 111 NPLTHLP--------ALPSGLCKLWIFGN-QLTSLPVLPPGLQEL 146

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 6e-06
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 128 LQRLDLPGNWFTGIYENRAYD-----SFGSLKQLKMLNLGDNFFNDSILPYL---NTLTS 179
           L++L L        ++          S      LK L + D    + ++      + L  
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280

Query: 180 LTTLILSDNSI--EGSRT-KQGLANLRYLQVLDLSGNFNITSGSLTRLGRLL 228
           L T+ +S   +  EG+R     +  +++L+ +++  N+ ++      L + L
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKSL 331

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 9/128 (7%)

Query: 110 GSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169
           G      +   L  P  ++Q+L L     TG        +  +L  L+ L+L DN   D+
Sbjct: 69  GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128

Query: 170 ILPYL-----NTLTSLTTLILSDNSI--EGSRT-KQGLANLRYLQVLDLSGNFNITSGSL 221
            L  L     +    L  L L   S+           L      + L +S N +I    +
Sbjct: 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGV 187

Query: 222 TRLGRLLR 229
             L + L+
Sbjct: 188 RVLCQGLK 195

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 20/133 (15%)

Query: 97  LSLNETIK----FNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGS 152
           L   E++K         G   A LL  +L  P  +L+ L +    FT          F S
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT----AACCSHFSS 335

Query: 153 L----KQLKMLNLGDNFFNDSILPYL-----NTLTSLTTLILSDNSI--EGSRT-KQGLA 200
           +    + L  L + +N   D+ +  L        + L  L L+D  +      +    L 
Sbjct: 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395

Query: 201 NLRYLQVLDLSGN 213
               L+ LDLS N
Sbjct: 396 ANHSLRELDLSNN 408

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND----SILPYLNTLTSLT 181
            ++Q LD+     +   + R  +    L+Q +++ L D    +     I   L    +L 
Sbjct: 3   LDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 182 TLILSDNSIEGSRTK---QGLANL-RYLQVLDLSGNFNITSGSLTRLGRLLR 229
            L L  N +         QGL      +Q L L     +T      L   LR
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLR 110

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 13/104 (12%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
                 L  +    N    +              L+ +  G+N      LP L  L  LT
Sbjct: 191 LQNLPFLTAIYADNNSLKKL--------PDLPLSLESIVAGNNIL--EELPELQNLPFLT 240

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGN-FNITSGSLTRL 224
           T+   +N +          +L  L V D           SLT L
Sbjct: 241 TIYADNNLL--KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFL 282

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 20/110 (18%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
                 L+ +D+  N    +              L+ +  G+N      LP L  L  LT
Sbjct: 149 LQNSSFLKIIDVDNNSLKKL--------PDLPPSLEFIAAGNNQL--EELPELQNLPFLT 198

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
            +   +NS+   +      +L     +    N  +       +L  L  +
Sbjct: 199 AIYADNNSL--KKLPDLPLSLES---IVAGNN-ILEELPELQNLPFLTTI 242

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 30/120 (25%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI---------------L 171
            L+ L    N  T + E        SLK L + N      +D                 L
Sbjct: 92  HLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           P L   + L  + + +NS+   +      +L +   +    N  +       +L  L  +
Sbjct: 147 PELQNSSFLKIIDVDNNSL--KKLPDLPPSLEF---IAAGNN-QLEELPELQNLPFLTAI 200

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 22/124 (17%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLN------LGDNFFNDSI 170
           +    F  F +L+++++  N    + E   + +   L ++++        +    F +  
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN-- 102

Query: 171 LPYLNTLTSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLG 225
                 L +L  L++S+  I+      K           LD+  N NI +    S   L 
Sbjct: 103 ------LPNLQYLLISNTGIKHLPDVHKIHSLQKVL---LDIQDNINIHTIERNSFVGLS 153

Query: 226 RLLR 229
               
Sbjct: 154 FESV 157

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 8/111 (7%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L M       EL+ L L  N    +        F   + L+ L++  N      +     
Sbjct: 67  LRMPDISFLSELRVLRLSHNRIRSLDF----HVFLFNQDLEYLDVSHNRL--QNISCCP- 119

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           + SL  L LS N  +     +   NL  L  L LS         L  +  L
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDLLPVAHL 169

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLN 175
           L+  +F   ++L+ LD+  N    I       S   +  L+ L+L  N F+   +     
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQNI-------SCCPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
            LT LT L LS         +  L  + +L +  +  +             L
Sbjct: 144 NLTKLTFLGLSAAKF----RQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 11/117 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP---- 172
           ++M           L+   N FT            +LK+L+ L L  N            
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRNGL--KNFFKVAL 397

Query: 173 YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR 229
               ++SL TL +S NS+      +  A    + VL+LS N  +T      L   ++
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLPPKVK 453

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           +L+  F E+    L  +    I+         S      LN   N F DS+    +TL  
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMV----CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 180 LTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGN 213
           L TLIL  N ++   +      N+  L+ LD+S N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 17/113 (15%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP--YLNTLTS 179
           FH   +L+ L L  N    +        F  LK L+ L + DN      LP    + L +
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPAG----IFKELKNLETLWVTDNKL--QALPIGVFDQLVN 110

Query: 180 LTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
           L  L L  N ++    R    L  L Y   L L  N  + S   G   +L  L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTY---LSLGYN-ELQSLPKGVFDKLTSL 159

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 15/103 (14%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              L +L    N  T +              L  L    N   +  L  +  LT LT L 
Sbjct: 63  LTGLTKLICTSNNITTL-------DLSQNTNLTYLACDSNKLTN--LD-VTPLTKLTYLN 112

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
              N +    TK  ++    L  L+ + N  +T   ++   +L
Sbjct: 113 CDTNKL----TKLDVSQNPLLTYLNCARN-TLTEIDVSHNTQL 150

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              L  LD   +  T +           L  L  L    N      L  L+  T+LT L 
Sbjct: 41  LATLTSLDCHNSSITDM------TGIEKLTGLTKLICTSNNITT--LD-LSQNTNLTYLA 91

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
              N +    T   +  L  L  L+   N  +T   +++   L
Sbjct: 92  CDSNKL----TNLDVTPLTKLTYLNCDTN-KLTKLDVSQNPLL 129

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 14/106 (13%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
            +   +L  LD   N  T I           L QL   +   N    + L  ++TL+ LT
Sbjct: 208 LNQNIQLTFLDCSSNKLTEI-------DVTPLTQLTYFDCSVN--PLTELD-VSTLSKLT 257

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
           TL      +     +  L +   L      G   I    +T   +L
Sbjct: 258 TLHCIQTDL----LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQL 299

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL 208
           S   L  L  L+  ++   D  +  +  LT LT LI + N+I    T   L+    L  L
Sbjct: 37  SEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNI----TTLDLSQNTNLTYL 90

Query: 209 DLSGNFNITSGSLTRLGRL 227
               N  +T+  +T L +L
Sbjct: 91  ACDSN-KLTNLDVTPLTKL 108

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 14/106 (13%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
             P  +L  L+   N  T +              L  LN   N   +  +  ++  T LT
Sbjct: 102 VTPLTKLTYLNCDTNKLTKL-------DVSQNPLLTYLNCARNTLTE--ID-VSHNTQLT 151

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227
            L    N      TK  +     L  LD S N  IT   +++   L
Sbjct: 152 ELDCHLNKKI---TKLDVTPQTQLTTLDCSFN-KITELDVSQNKLL 193

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 18/106 (16%), Positives = 25/106 (23%), Gaps = 17/106 (16%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             +L  L         I             QL                 +   T L  L 
Sbjct: 253 LSKLTTLHCIQTDLLEI-------DLTHNTQLIYFQAEGC--RKIKELDVTHNTQLYLLD 303

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
                I    T+  L+    L  L L+    +T       T+L  L
Sbjct: 304 CQAAGI----TELDLSQNPKLVYLYLNNT-ELTELDVSHNTKLKSL 344

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 13/117 (11%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-- 173
           L    +F    +L++++   N  T I E     +F     +  + L  N   +  + +  
Sbjct: 47  LEATGIFKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEILLTSNRLEN--VQHKM 100

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRL 227
              L SL TL+L  N I           L  +++L L  N  IT+   G+   L  L
Sbjct: 101 FKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSL 155

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 9/110 (8%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGD-NFFNDSILPYLNTLT 178
           +      ++Q +D   +       +  +D    L+ ++ + L   ++  D  L  L+ L 
Sbjct: 55  TGPLDKYKIQAIDATDSCIM----SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 179 ----SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224
               S+  + +        +    L + R L+ L LS    +        
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQ 160

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 4/144 (2%)

Query: 82  WEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGI 141
           W+ +                +          S +   ++       +Q +DL  +     
Sbjct: 49  WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-- 106

Query: 142 YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA- 200
             +  +       +L+ L+L     +D I+  L   ++L  L LS  S       Q L  
Sbjct: 107 -VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165

Query: 201 NLRYLQVLDLSGNFNITSGSLTRL 224
           +   L  L+LS  F+ T   +   
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVA 189

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 25/110 (22%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              L+ LD+  N  T + E            L+ +N  +N      LP     TSL  L 
Sbjct: 119 PASLKHLDVDNNQLTMLPE--------LPALLEYINADNNQLTM--LP--ELPTSLEVLS 166

Query: 185 LSDNSIEGSRTKQGL-ANLRYLQVLDLSGNFNITS-----GSLTRLGRLL 228
           + +N +        L      L+ LD+S N  + S               
Sbjct: 167 VRNNQL------TFLPELPESLEALDVSTNL-LESLPAVPVRNHHSEETE 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.65
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.65
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.64
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.58
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.58
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.58
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.58
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.57
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.57
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.56
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.55
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.55
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.54
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.51
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.5
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.5
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.5
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.49
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.49
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.48
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.48
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.48
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.47
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.46
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.45
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.45
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.4
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.39
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.39
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.37
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.37
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.37
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.36
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.35
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.34
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.34
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.28
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.02
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.0
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.0
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.97
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.97
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.95
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.88
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.84
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.66
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.65
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.56
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.49
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.19
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.17
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.1
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.94
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.74
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.4
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.3
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.98
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.35

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.2e-24  Score=185.14  Aligned_cols=165  Identities=22%  Similarity=0.373  Sum_probs=114.1

Q ss_pred             CCCHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCceecCCC--CcEEEEecCC-Cccc--cc
Q 027045           35 ACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDD--WEGVKCNATT--RRVMQLSLNE-TIKF--NY  107 (229)
Q Consensus        35 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C~~--w~gv~C~~~~--~~v~~L~L~~-~l~~--~~  107 (229)
                      .|.+.|++||++||+++.    +|.   .+.+|..     +.+|| .  |.||+|+...  ++|+.|++++ ++.+  .+
T Consensus         2 ~c~~~~~~aL~~~k~~~~----~~~---~l~~W~~-----~~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~   68 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG----NPT---TLSSWLP-----TTDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI   68 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT----CCG---GGTTCCT-----TSCTT-TTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred             CCCHHHHHHHHHHHHhcC----Ccc---cccCCCC-----CCCCC-cCCCcceEeCCCCCCceEEEEECCCCCccCCccc
Confidence            588999999999999996    443   5789987     67899 7  9999997544  7999999999 8887  55


Q ss_pred             cCCCCCcc--------------ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc
Q 027045          108 SSGSGSAL--------------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY  173 (229)
Q Consensus       108 ~~~~~~~~--------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  173 (229)
                      |.......              ...+..|.++++|++|++++|++++.+|.    .|..+++|++|++++|.+++.+|..
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~  144 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCCcCChH
Confidence            54322111              11223455666666666666666666665    6666666666666666666666666


Q ss_pred             ccCCCCccEEeccCCcCCCCCChhhcCCCC-CCCEEeccCCcCCC
Q 027045          174 LNTLTSLTTLILSDNSIEGSRTKQGLANLR-YLQVLDLSGNFNIT  217 (229)
Q Consensus       174 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~-~L~~L~L~~N~l~~  217 (229)
                      +..+++|++|++++|++++.+|. .+..++ +|++|++++|.+++
T Consensus       145 ~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~  188 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEE
T ss_pred             HhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeec
Confidence            66666666666666666655665 566665 66666666666653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=8e-23  Score=192.96  Aligned_cols=169  Identities=29%  Similarity=0.342  Sum_probs=115.7

Q ss_pred             cCCCCCHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCcEEEEecCC-Ccccc---c
Q 027045           32 GYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFN---Y  107 (229)
Q Consensus        32 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C~~w~gv~C~~~~~~v~~L~L~~-~l~~~---~  107 (229)
                      +++++.+.|++||++||+++.    ||.   .+.+|..     +.+|| .|.||+|+  .++|+.|+|++ .+.|.   +
T Consensus         5 ~~~~~~~~~~~all~~k~~~~----~~~---~l~~W~~-----~~~~C-~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l   69 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLP----DKN---LLPDWSS-----NKNPC-TFDGVTCR--DDKVTSIDLSSKPLNVGFSAV   69 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCS----CTT---SSTTCCT-----TSCGG-GSTTEEEE--TTEEEEEECTTSCCCEEHHHH
T ss_pred             ccccCCHHHHHHHHHHHhhCC----Ccc---cccCCCC-----CCCCc-CCcceEEC--CCcEEEEECCCCCcCCccCcc
Confidence            344557889999999999996    453   5789987     67999 99999997  68999999999 88886   5


Q ss_pred             cCCCCCccccC------------CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccc-
Q 027045          108 SSGSGSALLLN------------MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-  174 (229)
Q Consensus       108 ~~~~~~~~~l~------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-  174 (229)
                      ++....+..++            +..|..+++|++|+|++|.++|.+|.  ...++.+++|++|++++|.+++.+|..+ 
T Consensus        70 ~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  147 (768)
T 3rgz_A           70 SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT--LTSLGSCSGLKFLNVSSNTLDFPGKVSGG  147 (768)
T ss_dssp             HHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGG--GGGGGGCTTCCEEECCSSEEECCSSCCSC
T ss_pred             ChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCC--hHHHhCCCCCCEEECcCCccCCcCCHHHh
Confidence            54333222111            24677888888888888888876653  1146677777777777777776666654 


Q ss_pred             cCCCCccEEeccCCcCCCCCChhh---cCCCCCCCEEeccCCcCCCC
Q 027045          175 NTLTSLTTLILSDNSIEGSRTKQG---LANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       175 ~~l~~L~~L~Ls~N~l~~~ip~~~---~~~l~~L~~L~L~~N~l~~~  218 (229)
                      ..+++|++|++++|++++..|. .   +.++++|++|++++|.+++.
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~  193 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGD  193 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESC
T ss_pred             ccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCCccccc
Confidence            5667777777777777663333 3   44455555555555544443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=5.5e-21  Score=177.03  Aligned_cols=179  Identities=19%  Similarity=0.186  Sum_probs=118.6

Q ss_pred             CCCHHHHHHHHHHHhhccccC----CCCCCCCCCCCCCCCCCCCCCCCCCCC---CCceecCCCCcEEEEecCC-Ccccc
Q 027045           35 ACLETERTALLEIKSFFISVS----DIGYDDKILPSWVGEDDGMSSDCCDDW---EGVKCNATTRRVMQLSLNE-TIKFN  106 (229)
Q Consensus        35 ~~~~~~~~~L~~~~~~~~~~~----~~~~~~~~~~~W~~~~~~~~~~~C~~w---~gv~C~~~~~~v~~L~L~~-~l~~~  106 (229)
                      +....|++||.++++++.+..    +++..  ...+|+.     ..++| .|   .||+|+. .++|++|+|++ ++.|.
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~--~~~~W~~-----~~~~c-~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~   96 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQ--PGANWNF-----NKELD-MWGAQPGVSLNS-NGRVTGLSLEGFGASGR   96 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC--------CCCCC-----SSCGG-GTTCCTTEEECT-TCCEEEEECTTSCCEEE
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCc--cCCCCCC-----CCCcc-cccCCCCeEEcC-CCCEEEEEecCcccCCc
Confidence            334579999999999986321    00111  2347988     68999 99   9999985 48999999999 99987


Q ss_pred             ccCCCCCcccc---------------------------------------------------------------------
Q 027045          107 YSSGSGSALLL---------------------------------------------------------------------  117 (229)
Q Consensus       107 ~~~~~~~~~~l---------------------------------------------------------------------  117 (229)
                      +|+.+..+..+                                                                     
T Consensus        97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~  176 (636)
T 4eco_A           97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK  176 (636)
T ss_dssp             ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred             CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence            76433211100                                                                     


Q ss_pred             ---------------------CCcccCCCCCCcEEeCCCCcCCCc-----------------cccccccccC--CCCCCc
Q 027045          118 ---------------------NMSLFHPFEELQRLDLPGNWFTGI-----------------YENRAYDSFG--SLKQLK  157 (229)
Q Consensus       118 ---------------------~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~~~~~--~l~~L~  157 (229)
                                           -+..++++++|++|++++|++++.                 +|.    .++  .+++|+
T Consensus       177 ~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~L~  252 (636)
T 4eco_A          177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKDLT  252 (636)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCC
T ss_pred             cccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCCCC
Confidence                                 112355667777777777777774                 565    666  777777


Q ss_pred             EEEcCCCCCCCCCcccccCCCCccEEeccCCc-CCC-CCChhhcCCC------CCCCEEeccCCcCCCCCC---cccCCC
Q 027045          158 MLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEG-SRTKQGLANL------RYLQVLDLSGNFNITSGS---LTRLGR  226 (229)
Q Consensus       158 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~ip~~~~~~l------~~L~~L~L~~N~l~~~~~---~~~l~~  226 (229)
                      +|++++|.+.+.+|..++++++|++|++++|+ +++ .+|. .++++      ++|++|++++|+++.++.   +..+.+
T Consensus       253 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~  331 (636)
T 4eco_A          253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK  331 (636)
T ss_dssp             EEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTT
T ss_pred             EEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCC
Confidence            77777777777777777777777777777776 665 5665 55554      677777777777765543   444444


Q ss_pred             C
Q 027045          227 L  227 (229)
Q Consensus       227 L  227 (229)
                      |
T Consensus       332 L  332 (636)
T 4eco_A          332 L  332 (636)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=9.2e-21  Score=180.85  Aligned_cols=169  Identities=20%  Similarity=0.171  Sum_probs=116.3

Q ss_pred             CCCCHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCC--CCCC------------CCceecCCCCcEEEEec
Q 027045           34 KACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDC--CDDW------------EGVKCNATTRRVMQLSL   99 (229)
Q Consensus        34 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--C~~w------------~gv~C~~~~~~v~~L~L   99 (229)
                      +++...|++||++||+++.    +|       +|+........+|  | .|            .||+|+. .++|+.|+|
T Consensus       264 ~~~~~~d~~ALl~~k~~l~----~~-------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~L  330 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALD----GK-------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLSL  330 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTT----GG-------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEEC
T ss_pred             cccchHHHHHHHHHHHHcC----CC-------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEEC
Confidence            3455689999999999996    22       5655000000245  9 99            9999985 689999999


Q ss_pred             CC-CccccccCCCCCcc---cc----------------------------------------------------------
Q 027045          100 NE-TIKFNYSSGSGSAL---LL----------------------------------------------------------  117 (229)
Q Consensus       100 ~~-~l~~~~~~~~~~~~---~l----------------------------------------------------------  117 (229)
                      ++ ++.|.+|+.+..+.   .+                                                          
T Consensus       331 s~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~  410 (876)
T 4ecn_A          331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR  410 (876)
T ss_dssp             TTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred             ccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence            99 99998775432211   00                                                          


Q ss_pred             -----------------------------CCcccCCCCCCcEEeCCCCcCCC-----------------ccccccccccC
Q 027045          118 -----------------------------NMSLFHPFEELQRLDLPGNWFTG-----------------IYENRAYDSFG  151 (229)
Q Consensus       118 -----------------------------~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~~~~~  151 (229)
                                                   -+..|.++++|++|+|++|+|++                 .+|.    .++
T Consensus       411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~  486 (876)
T 4ecn_A          411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELS  486 (876)
T ss_dssp             CTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCC
T ss_pred             CccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhh
Confidence                                         12346677788888888888887                 3666    666


Q ss_pred             --CCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCc-CCC-CCChhhcCCC-------CCCCEEeccCCcCCCCCC
Q 027045          152 --SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEG-SRTKQGLANL-------RYLQVLDLSGNFNITSGS  220 (229)
Q Consensus       152 --~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~ip~~~~~~l-------~~L~~L~L~~N~l~~~~~  220 (229)
                        .+++|++|++++|.+.+.+|..++++++|++|+|++|+ +++ .+|. .++++       ++|++|++++|.++.++.
T Consensus       487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~  565 (876)
T 4ecn_A          487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLEEFPA  565 (876)
T ss_dssp             GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred             hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence              78888888888888777778777777888888888777 776 5665 34433       377777777777665443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=6.9e-20  Score=156.74  Aligned_cols=170  Identities=17%  Similarity=0.173  Sum_probs=106.7

Q ss_pred             CCCCHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecC--------CCCcEEEEecCC-Ccc
Q 027045           34 KACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNA--------TTRRVMQLSLNE-TIK  104 (229)
Q Consensus        34 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C~~w~gv~C~~--------~~~~v~~L~L~~-~l~  104 (229)
                      .++..+|+++|++||+.+..   ++.+  ....|...+.. ..++| .|.|+.|..        ...+|+.|++++ ++.
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~---~~~~--~~~~w~~~~~~-~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~   94 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNA---DRNR--WHSAWRQANSN-NPQIE-TRTGRALKATADLLEDATQPGRVALELRSVPLP   94 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHH---CCTT--HHHHHHHHTTT-CTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS
T ss_pred             cccCchHHHHHHHHHHhccC---Cchh--hhhhhcccccc-ccccc-ccCCcchhhhHHHHhcccccceeEEEccCCCch
Confidence            34556789999999998852   4444  66778410001 57899 999999952        346899999999 766


Q ss_pred             ccccCCCCCcc---cc---------CCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcc
Q 027045          105 FNYSSGSGSAL---LL---------NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP  172 (229)
Q Consensus       105 ~~~~~~~~~~~---~l---------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  172 (229)
                       .+|.......   .+         -+..+..+++|++|++++|+++. +|.    .+..+++|++|++++|.+.+.+|.
T Consensus        95 -~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~-lp~----~l~~l~~L~~L~L~~n~~~~~~p~  168 (328)
T 4fcg_A           95 -QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA-LPA----SIASLNRLRELSIRACPELTELPE  168 (328)
T ss_dssp             -SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC-CCG----GGGGCTTCCEEEEEEETTCCCCCS
T ss_pred             -hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc-CcH----HHhcCcCCCEEECCCCCCccccCh
Confidence             5665433221   11         12346677778888888887774 565    666666666666666665555655


Q ss_pred             cccC---------CCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          173 YLNT---------LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       173 ~l~~---------l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      .+..         +++|++|++++|+++. +|. .++++++|++|++++|.+++.
T Consensus       169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~-~l~~l~~L~~L~L~~N~l~~l  221 (328)
T 4fcg_A          169 PLASTDASGEHQGLVNLQSLRLEWTGIRS-LPA-SIANLQNLKSLKIRNSPLSAL  221 (328)
T ss_dssp             CSEEEC-CCCEEESTTCCEEEEEEECCCC-CCG-GGGGCTTCCEEEEESSCCCCC
T ss_pred             hHhhccchhhhccCCCCCEEECcCCCcCc-chH-hhcCCCCCCEEEccCCCCCcC
Confidence            4433         5556666666666553 554 455566666666666655554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=2.6e-18  Score=139.66  Aligned_cols=126  Identities=25%  Similarity=0.331  Sum_probs=85.1

Q ss_pred             CCCCCCCCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccc
Q 027045           75 SSDCCDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYEN  144 (229)
Q Consensus        75 ~~~~C~~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~  144 (229)
                      ....| .|.+|.|...         ...++.|++++ ++.+           +.+..|..+++|++|+|++|+|+.+.+.
T Consensus        15 ~~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~L~~N~l~~i~~~   82 (229)
T 3e6j_A           15 SQCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK-----------LEPGVFDSLINLKELYLGSNQLGALPVG   82 (229)
T ss_dssp             TTCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc-----------cCHHHhhCccCCcEEECCCCCCCCcChh
Confidence            46889 9999999751         24678899998 7776           3344566666777777777777664444


Q ss_pred             ccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          145 RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       145 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                          .|..+++|++|++++|.+++..+..|..+++|++|+|++|+++. +|. .+.++++|++|++++|++++.
T Consensus        83 ----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A           83 ----VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPR-GIERLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCT-TGGGCTTCSEEECCSSCCCCC
T ss_pred             ----hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCc-ccccCCCCCEEECCCCcCCcc
Confidence                56666677777777777665555556666667777777776664 665 566666667777766666665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=1.7e-17  Score=132.37  Aligned_cols=124  Identities=25%  Similarity=0.331  Sum_probs=78.8

Q ss_pred             CCCCCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccc
Q 027045           78 CCDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAY  147 (229)
Q Consensus        78 ~C~~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  147 (229)
                      .| .|.+|.|...         ..+++.|++++ ++.+           +....|..+++|++|++++|++++..+.   
T Consensus         6 ~C-~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~---   70 (208)
T 2o6s_A            6 SC-SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-----------LPNGVFDELTSLTQLYLGGNKLQSLPNG---   70 (208)
T ss_dssp             EE-ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCCCCTT---
T ss_pred             EE-CCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc-----------CChhhhcccccCcEEECCCCccCccChh---
Confidence            36 8999999652         23588899998 7765           3334455666666666666666664444   


Q ss_pred             cccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       148 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                       .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+.++++|++|++++|++++.
T Consensus        71 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~  139 (208)
T 2o6s_A           71 -VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSV  139 (208)
T ss_dssp             -TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             -hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCcccee
Confidence             45666666666666666665444455666666666666666665 4443456666666666666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2.2e-17  Score=133.40  Aligned_cols=131  Identities=25%  Similarity=0.382  Sum_probs=95.3

Q ss_pred             CCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccccc
Q 027045           81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF  150 (229)
Q Consensus        81 ~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  150 (229)
                      .|..+.|...         ...++.|++++ ++.+           +....|..+++|++|+|++|+++++.|.    .|
T Consensus        12 ~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~-----------i~~~~~~~l~~L~~L~Ls~N~i~~~~~~----~~   76 (220)
T 2v9t_B           12 SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV-----------IPPGAFSPYKKLRRIDLSNNQISELAPD----AF   76 (220)
T ss_dssp             ETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE-----------ECTTSSTTCTTCCEEECCSSCCCEECTT----TT
T ss_pred             CCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC-----------cCHhHhhCCCCCCEEECCCCcCCCcCHH----Hh
Confidence            6777888541         23678888888 6665           4455677788888888888888887777    78


Q ss_pred             CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC--CcccCCCC
Q 027045          151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG--SLTRLGRL  227 (229)
Q Consensus       151 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L  227 (229)
                      .++++|++|++++|.++...+..|..+++|++|+|++|++++ ++...|..+++|++|++++|++++..  .+..+.+|
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  154 (220)
T 2v9t_B           77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI  154 (220)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence            888888888888888885555556778888888888888887 43336778888888888888887763  24444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=1.2e-17  Score=132.17  Aligned_cols=125  Identities=27%  Similarity=0.348  Sum_probs=105.8

Q ss_pred             CCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCC-cccCCCCCCcEEeCCCCcCCCccccccccc
Q 027045           81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNM-SLFHPFEELQRLDLPGNWFTGIYENRAYDS  149 (229)
Q Consensus        81 ~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  149 (229)
                      .|..+.|...         ...++.|++++ ++.+           +.. ..|..+++|++|++++|+|++..|.    .
T Consensus         9 ~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~   73 (192)
T 1w8a_A            9 EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR-----------ISSDGLFGRLPHLVKLELKRNQLTGIEPN----A   73 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS-----------BCCSCSGGGCTTCCEEECCSSCCCCBCTT----T
T ss_pred             CCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCc-----------cCCccccccCCCCCEEECCCCCCCCcCHh----H
Confidence            6777777541         22677888888 6655           333 3588999999999999999998888    9


Q ss_pred             cCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCc
Q 027045          150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSL  221 (229)
Q Consensus       150 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~  221 (229)
                      |..+++|++|++++|++++..|..|..+++|++|+|++|++++..|. .+..+++|++|++++|++++...+
T Consensus        74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccCcCcc
Confidence            99999999999999999988888899999999999999999995565 899999999999999999987544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=3.7e-17  Score=134.29  Aligned_cols=95  Identities=28%  Similarity=0.334  Sum_probs=61.2

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..|..+++|++|++++|++++..+.    .|..+++|++|++++|.+++..+..+..+++|++|+|++|++++ +|...|
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~  151 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAF  151 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTT
T ss_pred             hHhccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHc
Confidence            3455666666666666666665554    56666667777777776665555556666777777777777766 444356


Q ss_pred             CCCCCCCEEeccCCcCCCCC
Q 027045          200 ANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~~  219 (229)
                      ..+++|++|++++|++++..
T Consensus       152 ~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          152 DKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TTCTTCCEEECCSSCCSCCC
T ss_pred             CcCcCCCEEECCCCcCCccC
Confidence            66777777777777776653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=4.9e-17  Score=126.64  Aligned_cols=123  Identities=24%  Similarity=0.334  Sum_probs=105.0

Q ss_pred             CCCCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccc
Q 027045           79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD  148 (229)
Q Consensus        79 C~~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  148 (229)
                      | .|.++.|...         ...++.|++++ ++.+           +....|..+++|++|++++|++++..+.    
T Consensus         7 C-~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~----   70 (177)
T 2o6r_A            7 C-SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----------LPHGVFDKLTQLTKLSLSQNQIQSLPDG----   70 (177)
T ss_dssp             E-ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCCCCTT----
T ss_pred             e-CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE-----------eCHHHhcCcccccEEECCCCcceEeChh----
Confidence            6 7899988641         23678888888 6665           4556688899999999999999997666    


Q ss_pred             ccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       149 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ +|...+..+++|++|++++|++.+.
T Consensus        71 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           71 VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeecc
Confidence            78999999999999999997777778999999999999999997 7765678899999999999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=5.4e-17  Score=131.14  Aligned_cols=123  Identities=22%  Similarity=0.314  Sum_probs=66.4

Q ss_pred             CCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccccc
Q 027045           81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF  150 (229)
Q Consensus        81 ~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  150 (229)
                      .|..+.|.+.         ...++.|++++ ++.+..+          ...|..+++|++|++++|+|+++.+.    .|
T Consensus        12 ~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~----------~~~~~~l~~L~~L~L~~N~i~~i~~~----~~   77 (220)
T 2v70_A           12 EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEA----------TGIFKKLPQLRKINFSNNKITDIEEG----AF   77 (220)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECC----------CCCGGGCTTCCEEECCSSCCCEECTT----TT
T ss_pred             CCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCc----------hhhhccCCCCCEEECCCCcCCEECHH----Hh
Confidence            5666666431         12456777777 6655211          23345555555555555555554444    45


Q ss_pred             CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       151 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      ..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|. .|.++++|++|++++|++++.
T Consensus        78 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A           78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCB
T ss_pred             CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEE
Confidence            5555555555555555544444455555555555555555552232 455555555555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=1.3e-16  Score=132.31  Aligned_cols=91  Identities=24%  Similarity=0.224  Sum_probs=45.9

Q ss_pred             CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  202 (229)
                      ..+++|++|++++|++++..+.    .|..+++|++|++++|.+++..+..|..+++|++|++++|++++ +|...|..+
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l  156 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKL  156 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTC
T ss_pred             cCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccCC
Confidence            3344444444444444443333    34445555555555555554444445555555555555555554 443245555


Q ss_pred             CCCCEEeccCCcCCCC
Q 027045          203 RYLQVLDLSGNFNITS  218 (229)
Q Consensus       203 ~~L~~L~L~~N~l~~~  218 (229)
                      ++|++|++++|.+++.
T Consensus       157 ~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A          157 TSLKELRLYNNQLKRV  172 (270)
T ss_dssp             TTCCEEECCSSCCSCC
T ss_pred             cccceeEecCCcCcEe
Confidence            5566666655555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.2e-16  Score=126.69  Aligned_cols=113  Identities=22%  Similarity=0.256  Sum_probs=96.6

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  171 (229)
                      .++.|++++ ++..           +. ..|.++++|++|++++|+|+++.+.    .|..+++|++|++++|.+++..|
T Consensus        32 ~l~~L~L~~n~i~~-----------ip-~~~~~l~~L~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~   95 (193)
T 2wfh_A           32 DVTELYLDGNQFTL-----------VP-KELSNYKHLTLIDLSNNRISTLSNQ----SFSNMTQLLTLILSYNRLRCIPP   95 (193)
T ss_dssp             TCCEEECCSSCCCS-----------CC-GGGGGCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCCEEECCCCcCch-----------hH-HHhhcccCCCEEECCCCcCCEeCHh----HccCCCCCCEEECCCCccCEeCH
Confidence            567777777 5543           22 5688899999999999999998777    89999999999999999998888


Q ss_pred             ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcc
Q 027045          172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT  222 (229)
Q Consensus       172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~  222 (229)
                      ..|..+++|++|+|++|++++ +|...|..+++|++|++++|++...+.+.
T Consensus        96 ~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A           96 RTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             TTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             HHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeecCCcCH
Confidence            889999999999999999997 77657889999999999999987765443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.66  E-value=5e-16  Score=141.78  Aligned_cols=111  Identities=24%  Similarity=0.298  Sum_probs=90.5

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      ..++.|||++ ++.+           +.+..|.++++|++|+|++|+|+++.|.    .|.++++|++|+|++|++++..
T Consensus        52 ~~~~~LdLs~N~i~~-----------l~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH-----------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             TTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEEC
T ss_pred             cCCCEEEeeCCCCCC-----------CCHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCC
Confidence            4688999998 7775           5667788888888888888888887776    7888888888888888888666


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +..|.++++|++|++++|++++ +|...|+++++|++|++++|.+++.
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~  163 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSF  163 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             HHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccC
Confidence            6778888888888888888887 6654688888888888888888765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.65  E-value=5.1e-16  Score=125.38  Aligned_cols=115  Identities=21%  Similarity=0.202  Sum_probs=102.2

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ .+.+           +....|.++++|++|++++|++++..+.    .|..+++|++|++++|.+++..
T Consensus        57 ~~L~~L~L~~N~i~~-----------i~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~  121 (220)
T 2v70_A           57 PQLRKINFSNNKITD-----------IEEGAFEGASGVNEILLTSNRLENVQHK----MFKGLESLKTLMLRSNRITCVG  121 (220)
T ss_dssp             TTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCCCCGG----GGTTCSSCCEEECTTSCCCCBC
T ss_pred             CCCCEEECCCCcCCE-----------ECHHHhCCCCCCCEEECCCCccCccCHh----HhcCCcCCCEEECCCCcCCeEC
Confidence            4688899998 7765           5566789999999999999999998777    8999999999999999999888


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcc
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT  222 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~  222 (229)
                      |..|..+++|++|+|++|++++..|. .|..+++|++|++++|++++...+.
T Consensus       122 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          122 NDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             TTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             HhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecCcCCcCCCchH
Confidence            99999999999999999999994455 8999999999999999998765443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.65  E-value=2e-15  Score=123.90  Aligned_cols=94  Identities=30%  Similarity=0.370  Sum_probs=60.4

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..|..+++|++|++++|+|++..+.    .|..+++|++|++++|.+++..+..++.+++|++|+|++|++++ ++...+
T Consensus       101 ~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~  175 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAF  175 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTT
T ss_pred             hHhcccCCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc-cCHHHH
Confidence            4456666677777777766665544    55666667777777776665555556666667777777776666 443356


Q ss_pred             CCCCCCCEEeccCCcCCCC
Q 027045          200 ANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~  218 (229)
                      ..+++|++|++++|++++.
T Consensus       176 ~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          176 DRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCTTCCEEECCSCCBCTT
T ss_pred             hCCCCCCEEEeeCCceeCC
Confidence            6666677777777766654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.64  E-value=9.5e-16  Score=123.80  Aligned_cols=116  Identities=27%  Similarity=0.312  Sum_probs=102.0

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|+|++ .+.+           +.+..|.++++|++|+|++|+|+.+.+.    .|..+++|++|++++|.+++..
T Consensus        56 ~~L~~L~Ls~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~N~l~~~~  120 (220)
T 2v9t_B           56 KKLRRIDLSNNQISE-----------LAPDAFQGLRSLNSLVLYGNKITELPKS----LFEGLFSLQLLLLNANKINCLR  120 (220)
T ss_dssp             TTCCEEECCSSCCCE-----------ECTTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCCEEECCCCcCCC-----------cCHHHhhCCcCCCEEECCCCcCCccCHh----HccCCCCCCEEECCCCCCCEeC
Confidence            4688999999 7765           5567899999999999999999996666    6899999999999999999888


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCccc
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTR  223 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~  223 (229)
                      |..|..+++|++|+|++|++++ ++...|..+++|++|++++|++...+.+.+
T Consensus       121 ~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~  172 (220)
T 2v9t_B          121 VDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFICDCHLKW  172 (220)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             HHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcCCCCccHH
Confidence            9999999999999999999998 665479999999999999999987655443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=1e-14  Score=121.10  Aligned_cols=95  Identities=26%  Similarity=0.285  Sum_probs=58.0

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      ...|..+++|++|++++|++++..+.    .|..+++|++|++++|.+++..+..++.+++|++|++++|++++ ++...
T Consensus       102 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~  176 (272)
T 3rfs_A          102 NGVFDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGV  176 (272)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred             hhHhcCCcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHH
Confidence            33455666666666666666665544    45666666666666666665555555666666666666666665 44334


Q ss_pred             cCCCCCCCEEeccCCcCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +.++++|++|++++|++++.
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          177 FDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TTTCTTCCEEECCSSCCSCC
T ss_pred             hcCCccCCEEECCCCcCCcc
Confidence            56666666666666666655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=9.6e-15  Score=113.32  Aligned_cols=89  Identities=28%  Similarity=0.248  Sum_probs=81.8

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  205 (229)
                      ++|++|+|++|+|+++.|.    .|..+++|++|++++|++++..+..|..+++|++|+|++|+|++ +|...|.++++|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCC
Confidence            7899999999999998888    89999999999999999997777778999999999999999998 666579999999


Q ss_pred             CEEeccCCcCCCCC
Q 027045          206 QVLDLSGNFNITSG  219 (229)
Q Consensus       206 ~~L~L~~N~l~~~~  219 (229)
                      ++|++++|+++..+
T Consensus       105 ~~L~L~~N~~~c~c  118 (170)
T 3g39_A          105 THIWLLNNPWDCAC  118 (170)
T ss_dssp             CEEECCSSCBCTTB
T ss_pred             CEEEeCCCCCCCCc
Confidence            99999999998764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.60  E-value=1e-15  Score=144.47  Aligned_cols=93  Identities=30%  Similarity=0.379  Sum_probs=88.8

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      .+..+++|++||+++|+++|.+|.    .++.++.|+.|++++|.++|.+|..++.+++|++|||++|+++|.+|. .+.
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-~l~  701 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMS  701 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-GGG
T ss_pred             hhhccccccEEECcCCcccccCCH----HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh-HHh
Confidence            467789999999999999999999    999999999999999999999999999999999999999999998998 899


Q ss_pred             CCCCCCEEeccCCcCCCC
Q 027045          201 NLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~  218 (229)
                      ++++|++|++++|+++|.
T Consensus       702 ~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          702 ALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             GCCCCSEEECCSSEEEEE
T ss_pred             CCCCCCEEECcCCccccc
Confidence            999999999999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=2.2e-15  Score=113.82  Aligned_cols=118  Identities=28%  Similarity=0.285  Sum_probs=98.8

Q ss_pred             CcEEEEecCC-Ccc-ccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIK-FNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS  169 (229)
Q Consensus        92 ~~v~~L~L~~-~l~-~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~  169 (229)
                      .+++.|++++ .+. +.+|           ..+..+++|++|++++|.+++.  .    .+..+++|++|++++|.+++.
T Consensus        17 ~~l~~L~l~~n~l~~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~   79 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE-----------GLTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGG   79 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC-----------SCCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSC
T ss_pred             ccCeEEEccCCcCChhHHH-----------HHHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccch
Confidence            4688899999 776 4222           4567889999999999999996  4    899999999999999999987


Q ss_pred             CcccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCCcCCCCCC-----cccCCCC
Q 027045          170 ILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSGS-----LTRLGRL  227 (229)
Q Consensus       170 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~~-----~~~l~~L  227 (229)
                      +|..+..+++|++|++++|++++ +|. ..+..+++|++|++++|.+++.+.     +..+++|
T Consensus        80 ~~~~~~~l~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           80 LEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             THHHHHHCTTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             HHHHhhhCCCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            88888889999999999999998 541 278999999999999999998754     4445554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.60  E-value=2.2e-15  Score=131.05  Aligned_cols=94  Identities=23%  Similarity=0.175  Sum_probs=57.4

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..|..+++|++|++++|.+++..|.    .|..+++|++|++++|.++...+..+..+++|++|++++|++++ ++...+
T Consensus        87 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~  161 (390)
T 3o6n_A           87 YAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTF  161 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTT
T ss_pred             hhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhc
Confidence            4556666666666666666665555    56666666666666666663333334666666666666666665 333256


Q ss_pred             CCCCCCCEEeccCCcCCCC
Q 027045          200 ANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~  218 (229)
                      .++++|++|++++|.+++.
T Consensus       162 ~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          162 QATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             SSCTTCCEEECCSSCCSBC
T ss_pred             cCCCCCCEEECCCCcCCcc
Confidence            6666666666666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=4.6e-15  Score=128.16  Aligned_cols=94  Identities=29%  Similarity=0.294  Sum_probs=55.2

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..|.++++|++|+|++|+|+++.+.    .|..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++ +|...|
T Consensus        82 ~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~  156 (361)
T 2xot_A           82 EAFVPVPNLRYLDLSSNHLHTLDEF----LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI  156 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGT
T ss_pred             hhccCCCCCCEEECCCCcCCcCCHH----HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHh
Confidence            3455566666666666666655444    55666666666666666665555566666666666666666665 554333


Q ss_pred             ---CCCCCCCEEeccCCcCCCC
Q 027045          200 ---ANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       200 ---~~l~~L~~L~L~~N~l~~~  218 (229)
                         ..+++|++|+|++|+|+.+
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             C----CTTCCEEECCSSCCCCC
T ss_pred             cCcccCCcCCEEECCCCCCCcc
Confidence               3466666666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.59  E-value=1.9e-14  Score=119.31  Aligned_cols=104  Identities=26%  Similarity=0.333  Sum_probs=75.9

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      ...|..+++|++|++++|++++..+.    .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...
T Consensus       102 ~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~  176 (270)
T 2o6q_A          102 IGVFDQLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGA  176 (270)
T ss_dssp             TTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTT
T ss_pred             HhHcccccCCCEEECCCCccCeeCHH----HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-eChhH
Confidence            34567778888888888888876666    67788888888888888876555567778888888888888877 55446


Q ss_pred             cCCCCCCCEEeccCCcCCCCC--CcccCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITSG--SLTRLGRL  227 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L  227 (229)
                      |.++++|++|++++|++++.+  .+..+.+|
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence            777888888888888877763  24444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=1.1e-14  Score=118.22  Aligned_cols=111  Identities=25%  Similarity=0.245  Sum_probs=99.0

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|+|++ ++..           +....|..+++|++|+|++|+|++..+.    .|..+++|++|++++|.++ .+
T Consensus        64 ~~L~~L~L~~N~l~~-----------i~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~-~l  127 (229)
T 3e6j_A           64 INLKELYLGSNQLGA-----------LPVGVFDSLTQLTVLDLGTNQLTVLPSA----VFDRLVHLKELFMCCNKLT-EL  127 (229)
T ss_dssp             TTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCC-SC
T ss_pred             cCCcEEECCCCCCCC-----------cChhhcccCCCcCEEECCCCcCCccChh----HhCcchhhCeEeccCCccc-cc
Confidence            4688999999 7754           5556788999999999999999997776    7899999999999999999 78


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      |..+..+++|++|+|++|++++ +|...+..+++|++|++++|++.+.+
T Consensus       128 p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          128 PRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            9999999999999999999998 66557999999999999999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.58  E-value=1.5e-14  Score=115.24  Aligned_cols=111  Identities=25%  Similarity=0.260  Sum_probs=97.2

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ ++.+           +....|..+++|++|++++|++++..+.    .|..+++|++|++++|.+++..
T Consensus        52 ~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~  116 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQS-----------LPNGVFNKLTSLTYLNLSTNQLQSLPNG----VFDKLTQLKELALNTNQLQSLP  116 (208)
T ss_dssp             TTCSEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccCcEEECCCCccCc-----------cChhhcCCCCCcCEEECCCCcCCccCHh----HhcCccCCCEEEcCCCcCcccC
Confidence            4688999998 7765           4556688999999999999999997666    7899999999999999999777


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +..+..+++|++|++++|++++ ++...+..+++|++|++++|.+.+.
T Consensus       117 ~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A          117 DGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             HhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeecC
Confidence            7778999999999999999998 6664689999999999999988764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.58  E-value=4.6e-15  Score=127.40  Aligned_cols=120  Identities=31%  Similarity=0.432  Sum_probs=79.6

Q ss_pred             CCCCCCCCCceecCC-----------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccc
Q 027045           76 SDCCDDWEGVKCNAT-----------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYE  143 (229)
Q Consensus        76 ~~~C~~w~gv~C~~~-----------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p  143 (229)
                      ...| .|.|+ |+..           ..+++.|++++ ++.+           +....|.++++|++|++++|++++..|
T Consensus        27 ~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (353)
T 2z80_A           27 SLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----------ISNSDLQRCVNLQALVLTSNGINTIEE   93 (353)
T ss_dssp             CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred             CCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-----------cCHHHhccCCCCCEEECCCCccCccCH
Confidence            4567 88876 6431           23678888888 7665           344456667777777777777777655


Q ss_pred             cccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCC
Q 027045          144 NRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGN  213 (229)
Q Consensus       144 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N  213 (229)
                      .    .|..+++|++|++++|.+++..+..++.+++|++|++++|++++ +|. ..+.++++|++|++++|
T Consensus        94 ~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A           94 D----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             T----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEES
T ss_pred             h----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCC
Confidence            5    66777777777777777765444446667777777777777765 543 35666777777777766

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.58  E-value=2.1e-14  Score=119.17  Aligned_cols=119  Identities=28%  Similarity=0.280  Sum_probs=101.7

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ .+.+             ...+..+++|++|++++|.+++..+.    .|..+++|++|++++|.+++..
T Consensus        63 ~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~  125 (272)
T 3rfs_A           63 PNVRYLALGGNKLHD-------------ISALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLP  125 (272)
T ss_dssp             TTCCEEECTTSCCCC-------------CGGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCC
T ss_pred             CCCcEEECCCCCCCC-------------chhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccC
Confidence            4688899998 7765             23578899999999999999997776    7899999999999999999877


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCC--cccCCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS--LTRLGRLL  228 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~  228 (229)
                      +..+..+++|++|++++|++++ +|...+.++++|++|++++|++++...  +..+.+|.
T Consensus       126 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  184 (272)
T 3rfs_A          126 DGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK  184 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             HHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence            7778999999999999999998 665468999999999999999998743  45555553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=5.5e-15  Score=113.86  Aligned_cols=110  Identities=25%  Similarity=0.246  Sum_probs=71.3

Q ss_pred             CcEEEEecCC-Ccc-ccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIK-FNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS  169 (229)
Q Consensus        92 ~~v~~L~L~~-~l~-~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~  169 (229)
                      .+++.|++++ ++. +.+|           ..+..+++|++|++++|.+++.  .    .+..+++|++|++++|.+++.
T Consensus        24 ~~L~~L~l~~n~l~~~~i~-----------~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~l~~~   86 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIE-----------GLTAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENRIFGG   86 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCS-----------SCCGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCCCCSC
T ss_pred             ccCCEEECCCCCCChhhHH-----------HHHHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCcCchH
Confidence            4577777777 665 3222           2345566777777777777664  3    566677777777777777655


Q ss_pred             CcccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCCcCCCCC
Q 027045          170 ILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       170 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      +|..+..+++|++|++++|++++ +|. ..+..+++|++|++++|++++.+
T Consensus        87 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A           87 LDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             CCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred             HHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchH
Confidence            66666666777777777777766 431 25666777777777777766654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=2.2e-14  Score=111.79  Aligned_cols=106  Identities=23%  Similarity=0.207  Sum_probs=90.4

Q ss_pred             EEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc
Q 027045           95 MQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY  173 (229)
Q Consensus        95 ~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  173 (229)
                      +.+++++ ++.. +|.          . +  .++|++|++++|+|++..|.    .|..+++|++|+|++|++++..+..
T Consensus        15 ~~l~~~~n~l~~-iP~----------~-~--~~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~   76 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPA----------G-I--PTDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGV   76 (174)
T ss_dssp             SEEECCSSCCSS-CCS----------C-C--CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cEEEeCCCCCCc-cCC----------C-c--CCCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhH
Confidence            4688888 6643 332          1 1  27899999999999998888    8999999999999999999766666


Q ss_pred             ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045          174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       174 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      |..+++|++|+|++|+|++ +|...|.++++|++|++++|++...+
T Consensus        77 ~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           77 FDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             hCCcchhhEEECCCCccce-eCHHHhccccCCCEEEeCCCCccccc
Confidence            8999999999999999998 77646999999999999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.58  E-value=6.8e-15  Score=132.92  Aligned_cols=119  Identities=29%  Similarity=0.375  Sum_probs=84.1

Q ss_pred             CCCCCCCceecCC-----------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccc
Q 027045           78 CCDDWEGVKCNAT-----------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENR  145 (229)
Q Consensus        78 ~C~~w~gv~C~~~-----------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  145 (229)
                      .| .|.|+ |+..           ..+++.|++++ ++.+           +.+..|.++++|++|++++|++++..|. 
T Consensus         3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-   68 (549)
T 2z81_A            3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-----------IGHGDLRACANLQVLILKSSRINTIEGD-   68 (549)
T ss_dssp             EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-----------ECSSTTSSCTTCCEEECTTSCCCEECTT-
T ss_pred             cC-CCCce-EECCCCccccccccCCCCccEEECcCCccCc-----------cChhhhhcCCcccEEECCCCCcCccChh-
Confidence            47 88887 7642           23688899998 7765           3445567777777777777777776666 


Q ss_pred             cccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCC-CCChhhcCCCCCCCEEeccCCc
Q 027045          146 AYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNF  214 (229)
Q Consensus       146 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~L~~N~  214 (229)
                         .|..+++|++|++++|.+++..|..++.+++|++|++++|++++ .+|. .++++++|++|++++|.
T Consensus        69 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           69 ---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             ---TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESS
T ss_pred             ---hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCc
Confidence               67777777777777777776666667777777777777777764 2344 56777777777777776

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.58  E-value=1.8e-14  Score=119.51  Aligned_cols=94  Identities=23%  Similarity=0.242  Sum_probs=61.4

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCC-CCChhh
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG-SRTKQG  198 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~  198 (229)
                      ..|.++++|++|++++|++++..+.    .|..+++|++|++++|.+++..+..++.+++|++|++++|++++ .+|. .
T Consensus        70 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~  144 (276)
T 2z62_A           70 GAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-Y  144 (276)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-G
T ss_pred             HHccCCcCCCEEECCCCccCccChh----hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch-h
Confidence            3456666666666666666665555    66666677777777776665555556666777777777777665 2354 5


Q ss_pred             cCCCCCCCEEeccCCcCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +.++++|++|++++|++++.
T Consensus       145 ~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          145 FSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             GGGCTTCCEEECCSSCCCEE
T ss_pred             hccCCCCCEEECCCCCCCcC
Confidence            66677777777777766654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.57  E-value=3.4e-14  Score=118.38  Aligned_cols=104  Identities=24%  Similarity=0.281  Sum_probs=74.1

Q ss_pred             CcccCCCCCCcEEeCCCCc-CCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChh
Q 027045          119 MSLFHPFEELQRLDLPGNW-FTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ  197 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  197 (229)
                      +..|..+++|++|++++|. ++...|.    .|..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++..
T Consensus        73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~  147 (285)
T 1ozn_A           73 AAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDD  147 (285)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred             HhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-cCHh
Confidence            4456777777777777776 6665566    67777788888888887776667777777888888888888776 5543


Q ss_pred             hcCCCCCCCEEeccCCcCCCCCC--cccCCCC
Q 027045          198 GLANLRYLQVLDLSGNFNITSGS--LTRLGRL  227 (229)
Q Consensus       198 ~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L  227 (229)
                      .+.++++|++|++++|++++.+.  +..+.+|
T Consensus       148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             HhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence            57777888888888887776532  4444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.57  E-value=7.8e-15  Score=134.65  Aligned_cols=95  Identities=23%  Similarity=0.172  Sum_probs=62.7

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      +..|..+++|++|+|++|.+++..|.    .|+.+++|++|++++|.+++..+..|+.+++|++|+|++|.+++..|. .
T Consensus        92 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~  166 (597)
T 3oja_B           92 TYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-T  166 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-T
T ss_pred             hHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-h
Confidence            34566667777777777777776555    566777777777777777644444456677777777777777663333 5


Q ss_pred             cCCCCCCCEEeccCCcCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~  218 (229)
                      |.++++|++|++++|.+++.
T Consensus       167 ~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          167 FQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             TTTCTTCCEEECTTSCCSBC
T ss_pred             hhcCCcCcEEECcCCCCCCc
Confidence            66777777777777776665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.56  E-value=2.2e-14  Score=127.24  Aligned_cols=132  Identities=23%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             CcEEEEecCC-CccccccCCCCC-------------ccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCc
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGS-------------ALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLK  157 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~-------------~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~  157 (229)
                      ..++.|+|++ ++.+..+.....             +..+.+..|.++++|++|+|++|++++..+.    .|..+++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~  150 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG----AFEYLSKLR  150 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT----TSSSCTTCC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh----hhcccCCCC
Confidence            4688899988 776522221110             0112223344444455555555554443333    344455555


Q ss_pred             EEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          158 MLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       158 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      +|++++|.++...+..|..+++|+.|++++|+..+.++...|.++++|++|++++|++++.+.+..+.+|
T Consensus       151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L  220 (452)
T 3zyi_A          151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGL  220 (452)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTC
T ss_pred             EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccc
Confidence            5555555554333334445555555555543222224443566777777777777777776655555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.56  E-value=1.3e-14  Score=128.21  Aligned_cols=123  Identities=25%  Similarity=0.288  Sum_probs=77.4

Q ss_pred             CcEEEEecCC-CccccccCCCCCc---c-----------ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSA---L-----------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQL  156 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~---~-----------~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L  156 (229)
                      .+++.|++++ .+.+..|......   .           .+....|.++++|++|++++|++++..|.    .|..+++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L  105 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG----AFNGLANL  105 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT----TTTTCTTC
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh----hccCcccC
Confidence            4689999999 7776433322211   0           22234466667777777777777666566    66667777


Q ss_pred             cEEEcCCCCCCCCCccc--ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          157 KMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       157 ~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      ++|++++|.+++..|..  +..+++|++|++++|++++..|...+.++++|++|++++|.+++.
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            77777777766544443  666677777777777776644442266677777777777776654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.56  E-value=3.4e-14  Score=129.89  Aligned_cols=109  Identities=25%  Similarity=0.278  Sum_probs=57.5

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ .+.+           +....|.++++|++|++++|+++++.|.    .|..+++|++|++++|.+++..
T Consensus        32 ~~l~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~~~   96 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKI-----------LKSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFS   96 (606)
T ss_dssp             TTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCCCC
T ss_pred             CCcCEEECCCCCcCE-----------eChhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccccC
Confidence            5688899988 7765           3333444555555555555555554444    4555555555555555555444


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNI  216 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~  216 (229)
                      |..|+++++|++|++++|++++ ++...++++++|++|++++|.++
T Consensus        97 p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~  141 (606)
T 3vq2_A           97 PGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIH  141 (606)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCC
T ss_pred             hhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCccc
Confidence            4455555555555555555544 32223445555555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=3e-14  Score=112.50  Aligned_cols=115  Identities=22%  Similarity=0.213  Sum_probs=93.6

Q ss_pred             EEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc
Q 027045           95 MQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY  173 (229)
Q Consensus        95 ~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  173 (229)
                      +.+++++ ++.. +|.          . +  ..++++|++++|+|++..+.   ..|..+++|++|++++|.+++..|..
T Consensus        11 ~~l~~s~~~l~~-ip~----------~-~--~~~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~   73 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPR----------D-I--PLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEPNA   73 (192)
T ss_dssp             TEEECTTSCCSS-CCS----------C-C--CTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred             CEEEcCCCCcCc-Ccc----------C-C--CCCCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCCcCHhH
Confidence            5688988 6643 332          1 1  13899999999999997653   03889999999999999999988999


Q ss_pred             ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC--CCcccCCCC
Q 027045          174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS--GSLTRLGRL  227 (229)
Q Consensus       174 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L  227 (229)
                      |..+++|++|+|++|++++ ++...|.++++|++|++++|++++.  ..+..+.+|
T Consensus        74 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  128 (192)
T 1w8a_A           74 FEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL  128 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred             cCCcccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence            9999999999999999998 5544799999999999999999987  345555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.55  E-value=3.8e-14  Score=118.09  Aligned_cols=106  Identities=26%  Similarity=0.296  Sum_probs=81.3

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      +.+..|..+++|++|++++|++++..|.    .|..+++|++|++++|.+++..+..++.+++|++|++++|++++ +|.
T Consensus        96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~  170 (285)
T 1ozn_A           96 VDPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPE  170 (285)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECT
T ss_pred             cCHHHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCH
Confidence            3345677788888888888888887676    78888888888888888886666668888888888888888887 665


Q ss_pred             hhcCCCCCCCEEeccCCcCCCC--CCcccCCCC
Q 027045          197 QGLANLRYLQVLDLSGNFNITS--GSLTRLGRL  227 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L  227 (229)
                      ..+.++++|++|++++|.+++.  ..+..+.+|
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  203 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence            4688888888888888888776  234444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.55  E-value=2.1e-14  Score=127.86  Aligned_cols=122  Identities=26%  Similarity=0.296  Sum_probs=67.2

Q ss_pred             CCCCceecC---------CCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccccc
Q 027045           81 DWEGVKCNA---------TTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF  150 (229)
Q Consensus        81 ~w~gv~C~~---------~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  150 (229)
                      .|..|.|..         ....++.|++++ ++.+           +.+..|.++++|++|+|++|.+++..|.    .|
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~   76 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-----------LNQDEFASFPHLEELELNENIVSAVEPG----AF   76 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCEECTT----TT
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-----------ECHhHccCCCCCCEEECCCCccCEeChh----hh
Confidence            356677753         123677888888 7765           3334455555555555555555555455    55


Q ss_pred             CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       151 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      .++++|++|++++|.++...+..|.++++|++|+|++|++++..|. .|.++++|++|++++|.+++.
T Consensus        77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~  143 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYI  143 (477)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEE
T ss_pred             hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCcccee
Confidence            5555555555555555543334455555555555555555542232 455555555555555554443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.55  E-value=2.2e-14  Score=126.82  Aligned_cols=104  Identities=26%  Similarity=0.212  Sum_probs=60.5

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..|.++++|++|+|++|++++..+.    .|..+++|++|++++|.++...+..|..+++|++|++++|+..+.++...|
T Consensus       106 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~  181 (440)
T 3zyj_A          106 GAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF  181 (440)
T ss_dssp             GGGTTCSSCCEEECCSSCCSSCCTT----TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred             hhccCCccCCEEECCCCcCCeeCHh----HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh
Confidence            3455555555555555555554444    455555566666666655544444555556666666655333333554456


Q ss_pred             CCCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          200 ANLRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      .++++|++|++++|.++.++.+..+.+|
T Consensus       182 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L  209 (440)
T 3zyj_A          182 EGLSNLRYLNLAMCNLREIPNLTPLIKL  209 (440)
T ss_dssp             TTCSSCCEEECTTSCCSSCCCCTTCSSC
T ss_pred             hcccccCeecCCCCcCccccccCCCccc
Confidence            7777777777777777776655555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.55  E-value=1.6e-14  Score=114.33  Aligned_cols=102  Identities=24%  Similarity=0.270  Sum_probs=87.2

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCc-CCCCCChhh
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEGSRTKQG  198 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~~  198 (229)
                      ..+..+++|++|++++|++++..+.    .+..+++|++|++++|.+++..|..+..+++|++|++++|+ ++. +|  .
T Consensus        82 ~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~--~  154 (197)
T 4ezg_A           82 NPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM--P  154 (197)
T ss_dssp             GGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG--G
T ss_pred             hhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH--h
Confidence            4577889999999999999987777    88999999999999999987788889999999999999998 665 66  4


Q ss_pred             cCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                      +.++++|++|++++|.+++...+..+++|.
T Consensus       155 l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~  184 (197)
T 4ezg_A          155 LKTLPELKSLNIQFDGVHDYRGIEDFPKLN  184 (197)
T ss_dssp             GGGCSSCCEEECTTBCCCCCTTGGGCSSCC
T ss_pred             hcCCCCCCEEECCCCCCcChHHhccCCCCC
Confidence            888999999999999998887666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=2.8e-14  Score=123.22  Aligned_cols=123  Identities=21%  Similarity=0.216  Sum_probs=104.7

Q ss_pred             CCCCceecC---------CCCcEEEEecCC-CccccccCCCCCccccCCcccC-CCCCCcEEeCCCCcCCCccccccccc
Q 027045           81 DWEGVKCNA---------TTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFH-PFEELQRLDLPGNWFTGIYENRAYDS  149 (229)
Q Consensus        81 ~w~gv~C~~---------~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~  149 (229)
                      .+..+.|..         ....++.|+|++ ++.+           +....|. .+++|++|+|++|+|+++.+.    .
T Consensus        19 ~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~-----------l~~~~~~~~l~~L~~L~L~~N~i~~i~~~----~   83 (361)
T 2xot_A           19 ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR-----------LRAEWTPTRLTNLHSLLLSHNHLNFISSE----A   83 (361)
T ss_dssp             ETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE-----------ECTTSSSSCCTTCCEEECCSSCCCEECTT----T
T ss_pred             CCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCc-----------cChhhhhhcccccCEEECCCCcCCccChh----h
Confidence            566677754         123477899998 7765           5556676 899999999999999998777    8


Q ss_pred             cCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045          150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       150 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      |..+++|++|+|++|+++...+..|..+++|++|+|++|++++ ++...|.++++|++|+|++|++++++
T Consensus        84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeC
Confidence            9999999999999999997777789999999999999999998 54448999999999999999999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.54  E-value=2.9e-14  Score=122.00  Aligned_cols=95  Identities=23%  Similarity=0.176  Sum_probs=84.7

Q ss_pred             cCCCCCCcEEeCCC-CcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          122 FHPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      +..+++|++|+|++ |+|+++.+.    .|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++ +|...+.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~  101 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQ  101 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcc
Confidence            77888999999996 999998777    89999999999999999999888899999999999999999998 7764566


Q ss_pred             CCCCCCEEeccCCcCCCCCCcc
Q 027045          201 NLRYLQVLDLSGNFNITSGSLT  222 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~~~~~  222 (229)
                      .++ |+.|+|.+|++...+.+.
T Consensus       102 ~~~-L~~l~l~~N~~~c~c~l~  122 (347)
T 2ifg_A          102 GLS-LQELVLSGNPLHCSCALR  122 (347)
T ss_dssp             SCC-CCEEECCSSCCCCCGGGH
T ss_pred             cCC-ceEEEeeCCCccCCCccH
Confidence            665 999999999998765443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.54  E-value=3.6e-14  Score=125.28  Aligned_cols=95  Identities=24%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      +..|..+++|++|++++|.+++..|.    .|..+++|++|++++|.+++..|..+..+++|++|++++|++++ +|...
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~  390 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSR----MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGI  390 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGG----GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTT
T ss_pred             hhHhcCcccCCEEECCCCccCCcChh----HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhH
Confidence            33455666666666666666665555    56666666666666666665556666666666666666666665 44434


Q ss_pred             cCCCCCCCEEeccCCcCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +..+++|++|++++|++++.
T Consensus       391 ~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          391 FDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             TTTCTTCCEEECCSSCBCCC
T ss_pred             hccCCcccEEEccCCCcccC
Confidence            56666666666666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=1.1e-13  Score=109.59  Aligned_cols=97  Identities=27%  Similarity=0.344  Sum_probs=85.4

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  205 (229)
                      ++|++|++++|+|+. +|.    .|..+++|++|++++|.+++..+..|..+++|++|+|++|++++ ++...|.++++|
T Consensus        31 ~~l~~L~L~~n~i~~-ip~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L  104 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL-VPK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL  104 (193)
T ss_dssp             TTCCEEECCSSCCCS-CCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTC
T ss_pred             CCCCEEECCCCcCch-hHH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE-eCHHHhCCCCCC
Confidence            579999999999996 667    89999999999999999998888889999999999999999998 655479999999


Q ss_pred             CEEeccCCcCCCCC--CcccCCCCC
Q 027045          206 QVLDLSGNFNITSG--SLTRLGRLL  228 (229)
Q Consensus       206 ~~L~L~~N~l~~~~--~~~~l~~L~  228 (229)
                      ++|+|++|+++..+  .+..+.+|.
T Consensus       105 ~~L~L~~N~l~~~~~~~~~~l~~L~  129 (193)
T 2wfh_A          105 RLLSLHGNDISVVPEGAFNDLSALS  129 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CEEECCCCCCCeeChhhhhcCcccc
Confidence            99999999999874  355555553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=1.9e-13  Score=106.10  Aligned_cols=114  Identities=24%  Similarity=0.262  Sum_probs=92.9

Q ss_pred             EEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc
Q 027045           95 MQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY  173 (229)
Q Consensus        95 ~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  173 (229)
                      +.+++++ ++..           +...   -.++|++|++++|++++..+.    .|..+++|++|++++|.+++..+..
T Consensus        10 ~~l~~~~~~l~~-----------~p~~---~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~   71 (177)
T 2o6r_A           10 TEIRCNSKGLTS-----------VPTG---IPSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGV   71 (177)
T ss_dssp             TEEECCSSCCSS-----------CCTT---CCTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             CEEEecCCCCcc-----------CCCC---CCCCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhH
Confidence            5677877 6654           2211   236899999999999997766    7899999999999999999766677


Q ss_pred             ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCC--cccCCCC
Q 027045          174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS--LTRLGRL  227 (229)
Q Consensus       174 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L  227 (229)
                      +..+++|++|++++|++++ +|...+..+++|++|++++|++++.+.  +..+.+|
T Consensus        72 ~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  126 (177)
T 2o6r_A           72 FDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL  126 (177)
T ss_dssp             TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ccCCCccCEEECCCCCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence            8999999999999999998 665468899999999999999998743  4445554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.52  E-value=1.5e-13  Score=115.46  Aligned_cols=93  Identities=25%  Similarity=0.192  Sum_probs=68.6

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      .+..+++|++|++++|++++..+.    .|..+++|++|++++|++++..+..|..+++|+.|+|++|++++ +|...|.
T Consensus        95 ~~~~l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~  169 (290)
T 1p9a_G           95 LGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLN  169 (290)
T ss_dssp             CTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTT
T ss_pred             hhccCCCCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhc
Confidence            456677777778888877776666    67777778888888887776656666777778888888887776 6654567


Q ss_pred             CCCCCCEEeccCCcCCCC
Q 027045          201 NLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~  218 (229)
                      ++++|++|++++|+++.+
T Consensus       170 ~l~~L~~L~L~~N~l~~i  187 (290)
T 1p9a_G          170 GLENLDTLLLQENSLYTI  187 (290)
T ss_dssp             TCTTCCEEECCSSCCCCC
T ss_pred             CcCCCCEEECCCCcCCcc
Confidence            777777788777777765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.52  E-value=6.4e-14  Score=128.08  Aligned_cols=111  Identities=22%  Similarity=0.146  Sum_probs=79.1

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      ..++.|++++ .+.+           +.+..|.++++|++|++++|++++..|.    .|..+++|++|++++|.+++..
T Consensus        33 ~~l~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~   97 (606)
T 3t6q_A           33 NSTECLEFSFNVLPT-----------IQNTTFSRLINLTFLDLTRCQIYWIHED----TFQSQHRLDTLVLTANPLIFMA   97 (606)
T ss_dssp             TTCCEEECTTCCCSE-----------ECTTTSTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCSEEC
T ss_pred             CcCcEEEccCCccCc-----------CChhHhccCccceEEECCCCccceeChh----hccCccccCeeeCCCCcccccC
Confidence            4688899998 7765           4455667777777777777777776666    6777777777777777777666


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      |..++.+++|++|++++|++++ ++...++++++|++|++++|.+++.
T Consensus        98 ~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~  144 (606)
T 3t6q_A           98 ETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSI  144 (606)
T ss_dssp             TTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred             hhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCccccc
Confidence            6677777777777777777776 4323566777777777777777664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.51  E-value=5.9e-14  Score=130.05  Aligned_cols=122  Identities=21%  Similarity=0.164  Sum_probs=61.3

Q ss_pred             CcEEEEecCC-CccccccCCCCC-------------ccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCc
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGS-------------ALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLK  157 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~-------------~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~  157 (229)
                      .+++.|++++ ++.+..+.....             ...+.+..|.++++|++|++++|++++..+.    .|..+++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~  100 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLT  100 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCS
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh----hhccCCCCC
Confidence            4688888888 666522111100             0011223344455555555555555553333    455555555


Q ss_pred             EEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          158 MLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       158 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +|++++|.+++..|..|+.+++|++|++++|++++..|. .+.++++|++|++++|.+++.
T Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A          101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCB
T ss_pred             EEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCccccc
Confidence            555555555544444555555555555555555553332 455555555555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.50  E-value=7.1e-14  Score=115.88  Aligned_cols=110  Identities=25%  Similarity=0.310  Sum_probs=84.0

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  171 (229)
                      .++.|++++ ++.+           +....|.++++|++|++++|++++..+.    .|..+++|++|++++|.+++..+
T Consensus        29 ~l~~L~ls~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~   93 (276)
T 2z62_A           29 STKNLDLSFNPLRH-----------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLAL   93 (276)
T ss_dssp             TCCEEECTTCCCCE-----------ECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECT
T ss_pred             CccEEECCCCcccc-----------cCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccCh
Confidence            577788877 6665           4445677788888888888888876666    77888888888888888887666


Q ss_pred             ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      ..+..+++|++|++++|++++ ++...+.++++|++|++++|.+++.
T Consensus        94 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~  139 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSF  139 (276)
T ss_dssp             TTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             hhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCcccee
Confidence            778888888888888888877 4443577888888888888888763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.50  E-value=6.1e-14  Score=127.92  Aligned_cols=101  Identities=26%  Similarity=0.245  Sum_probs=88.5

Q ss_pred             CCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChh
Q 027045          118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ  197 (229)
Q Consensus       118 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  197 (229)
                      .+..|..+++|++|+|++|++++..|.    .|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|. 
T Consensus       486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~----~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-  560 (635)
T 4g8a_A          486 LPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-  560 (635)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS-
T ss_pred             CchhhhhccccCEEECCCCccCCcChH----HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH-
Confidence            345788899999999999999998888    899999999999999999988888899999999999999999985554 


Q ss_pred             hcCCC-CCCCEEeccCCcCCCCCCccc
Q 027045          198 GLANL-RYLQVLDLSGNFNITSGSLTR  223 (229)
Q Consensus       198 ~~~~l-~~L~~L~L~~N~l~~~~~~~~  223 (229)
                      .+..+ ++|++|++++|+++..+.+.+
T Consensus       561 ~l~~l~~~L~~L~L~~Np~~C~C~~~~  587 (635)
T 4g8a_A          561 ELQHFPSSLAFLNLTQNDFACTCEHQS  587 (635)
T ss_dssp             CTTCCCTTCCEEECTTCCBCCSGGGHH
T ss_pred             HHHhhhCcCCEEEeeCCCCcccCCcHH
Confidence            78887 689999999999988765443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.50  E-value=1.3e-13  Score=124.90  Aligned_cols=94  Identities=23%  Similarity=0.242  Sum_probs=50.7

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCC-CCChhh
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG-SRTKQG  198 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~  198 (229)
                      ..|.++++|++|++++|++++..|.    .|.++++|++|++++|.+++..+..++.+++|++|++++|.+++ .+|. .
T Consensus        70 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~  144 (570)
T 2z63_A           70 GAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-Y  144 (570)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-G
T ss_pred             ccccCchhCCEEeCcCCcCCccCHh----hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChh-h
Confidence            3455555555555555555554444    55555555555555555554333345555555555555555554 2344 4


Q ss_pred             cCCCCCCCEEeccCCcCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~  218 (229)
                      ++++++|++|++++|.+++.
T Consensus       145 ~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          145 FSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             GGGCTTCCEEECTTSCCCEE
T ss_pred             hcccCCCCEEeCcCCcccee
Confidence            55555566666655555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.49  E-value=9e-14  Score=118.66  Aligned_cols=130  Identities=20%  Similarity=0.192  Sum_probs=102.8

Q ss_pred             CcEEEEecCC-CccccccCCCCC------------cccc---------CCcccCCCCCCcEEeCCCCcCCCccccccccc
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGS------------ALLL---------NMSLFHPFEELQRLDLPGNWFTGIYENRAYDS  149 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~------------~~~l---------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  149 (229)
                      .+++.|++++ ++.+.+|.....            +..+         -+..+..+++|++|++++|++++ +|.    .
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~----~  224 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGP----A  224 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCG----G
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cch----h
Confidence            4688899998 888877765421            1111         12457788899999999999998 565    7


Q ss_pred             cCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC--CCcccCCCC
Q 027045          150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS--GSLTRLGRL  227 (229)
Q Consensus       150 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L  227 (229)
                      +..+++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|. .+.++++|++|++++|++.+.  ..+..+.+|
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L  303 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN  303 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence            88899999999999999889999999999999999999998888887 789999999999999887765  234444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.49  E-value=9.9e-14  Score=132.11  Aligned_cols=132  Identities=23%  Similarity=0.199  Sum_probs=97.9

Q ss_pred             CCCCceecCCCCcEEEEecCC-CccccccCCCCC--------------ccccCCcccCCCCCCcEEeCCCCcCCCccccc
Q 027045           81 DWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGS--------------ALLLNMSLFHPFEELQRLDLPGNWFTGIYENR  145 (229)
Q Consensus        81 ~w~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~~--------------~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  145 (229)
                      .|..|.+  ...+++.|+|++ .+.+..+.....              ...+.+..|.++++|++|+|++|++++..|. 
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-   91 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-   91 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-
Confidence            6777776  457888999998 776543332221              1123356678888888888888888887777 


Q ss_pred             cccccCCCCCCcEEEcCCCCCCCCCccc--ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          146 AYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       146 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                         .|.++++|++|++++|.+++.+|..  ++.+++|++|+|++|.+++..+...|+++++|++|++++|.+++.
T Consensus        92 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           92 ---AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             ---SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             ---HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence               8888888888888888888766654  788888888888888888744433688888888888888888775

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.49  E-value=1.6e-13  Score=121.33  Aligned_cols=90  Identities=27%  Similarity=0.312  Sum_probs=48.5

Q ss_pred             CCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChh
Q 027045          118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ  197 (229)
Q Consensus       118 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  197 (229)
                      ....|.++++|++|+|++|+++++.+.    .|.++++|++|++++|.++...+..|..+++|++|+|++|+++. ++..
T Consensus        80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~  154 (440)
T 3zyj_A           80 KVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSY  154 (440)
T ss_dssp             CTTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTT
T ss_pred             CHHHhhCCCCCCEEECCCCcCCccChh----hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHH
Confidence            334455555555555555555554444    55555555555555555554444445555555555555555554 4333


Q ss_pred             hcCCCCCCCEEeccC
Q 027045          198 GLANLRYLQVLDLSG  212 (229)
Q Consensus       198 ~~~~l~~L~~L~L~~  212 (229)
                      .|.++++|++|++++
T Consensus       155 ~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          155 AFNRIPSLRRLDLGE  169 (440)
T ss_dssp             TTTTCTTCCEEECCC
T ss_pred             HhhhCcccCEeCCCC
Confidence            455555555555555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.49  E-value=1.6e-14  Score=122.48  Aligned_cols=120  Identities=20%  Similarity=0.200  Sum_probs=81.4

Q ss_pred             CcEEEEecC-C-CccccccCCCCCcc-------------ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCC
Q 027045           92 RRVMQLSLN-E-TIKFNYSSGSGSAL-------------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQL  156 (229)
Q Consensus        92 ~~v~~L~L~-~-~l~~~~~~~~~~~~-------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L  156 (229)
                      .+++.|+++ . ++.+.+|.......             ...+..|.++++|++|++++|.+++.+|.    .+..+++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L  151 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNL  151 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTC
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCC
Confidence            356778887 3 66666665433221             12344577788888888888888877777    78888888


Q ss_pred             cEEEcCCCCCCCCCcccccCCC-CccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCC
Q 027045          157 KMLNLGDNFFNDSILPYLNTLT-SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       157 ~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~  217 (229)
                      ++|++++|.+++.+|..+..++ +|++|++++|++++.+|. .+..+. |++|++++|.+++
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEEE
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCcccC
Confidence            8888888888877787777776 777777777777754554 455444 5555555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.48  E-value=1.9e-13  Score=114.88  Aligned_cols=94  Identities=30%  Similarity=0.377  Sum_probs=60.9

Q ss_pred             cccCCCCCCcEEeCCCCcCCC-ccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          120 SLFHPFEELQRLDLPGNWFTG-IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      ..+..+++|++|++++|.+++ ..|.    .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++...
T Consensus       144 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~  218 (306)
T 2z66_A          144 GIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFP  218 (306)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGG
T ss_pred             hhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhh
Confidence            345566666777777666665 4455    66666677777777777666556666666677777777777666 43335


Q ss_pred             cCCCCCCCEEeccCCcCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +..+++|++|++++|++++.
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBC
T ss_pred             ccCcccCCEeECCCCCCccc
Confidence            66666777777777766654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.48  E-value=5.3e-14  Score=114.36  Aligned_cols=109  Identities=14%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCc-CCCccccccccccCCCCCCcEEEcCC-CCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW-FTGIYENRAYDSFGSLKQLKMLNLGD-NFFND  168 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~~  168 (229)
                      ..++.|++++ ++.+           +....|..+++|++|++++|+ ++++.+.    .|..+++|++|++++ |.+++
T Consensus        31 ~~l~~L~l~~n~l~~-----------i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~   95 (239)
T 2xwt_C           31 PSTQTLKLIETHLRT-----------IPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTY   95 (239)
T ss_dssp             TTCCEEEEESCCCSE-----------ECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCE
T ss_pred             CcccEEEEeCCcceE-----------ECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeE
Confidence            4678888888 7665           333345555555555555554 5554444    455555555555555 55554


Q ss_pred             CCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC---EEeccCC-cCCCC
Q 027045          169 SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ---VLDLSGN-FNITS  218 (229)
Q Consensus       169 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~---~L~L~~N-~l~~~  218 (229)
                      ..+..|..+++|++|++++|++++ +|.  +..+++|+   +|++++| .++++
T Consensus        96 i~~~~f~~l~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i  146 (239)
T 2xwt_C           96 IDPDALKELPLLKFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSI  146 (239)
T ss_dssp             ECTTSEECCTTCCEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEE
T ss_pred             cCHHHhCCCCCCCEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhc
Confidence            444445555555555555555554 442  44444444   5555554 44443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.48  E-value=2e-13  Score=121.01  Aligned_cols=93  Identities=25%  Similarity=0.230  Sum_probs=61.5

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCC-CCCCCCCcccccCCCCccEEeccCCcCCCCCChh
Q 027045          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGD-NFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ  197 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  197 (229)
                      ...|..+++|++|++++|+++.+.+.    .|..+++|++|++++ |.++...+..|..+++|++|++++|++++ +|. 
T Consensus       140 ~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-  213 (452)
T 3zyi_A          140 SGAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-  213 (452)
T ss_dssp             TTTSSSCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-
T ss_pred             hhhhcccCCCCEEECCCCCcceeCHh----HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-
Confidence            34566677777777777777765555    667777777777776 34443333456677777777777777766 553 


Q ss_pred             hcCCCCCCCEEeccCCcCCCC
Q 027045          198 GLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       198 ~~~~l~~L~~L~L~~N~l~~~  218 (229)
                       +..+++|++|++++|.+++.
T Consensus       214 -~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          214 -LTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             -CTTCTTCCEEECTTSCCSEE
T ss_pred             -ccccccccEEECcCCcCccc
Confidence             66677777777777777665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.48  E-value=3.3e-13  Score=114.81  Aligned_cols=119  Identities=28%  Similarity=0.399  Sum_probs=96.6

Q ss_pred             CCCCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccc
Q 027045           79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD  148 (229)
Q Consensus        79 C~~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  148 (229)
                      | .|..+.|...         ...++.|++++ ++.+           +.+..|.++++|++|++++|++++..|.    
T Consensus        33 c-~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~----   96 (332)
T 2ft3_A           33 C-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-----------LRKDDFKGLQHLYALVLVNNKISKIHEK----   96 (332)
T ss_dssp             E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECGG----
T ss_pred             c-cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-----------cCHhHhhCCCCCcEEECCCCccCccCHh----
Confidence            5 6888888541         23577888887 6664           5556788999999999999999998787    


Q ss_pred             ccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCC
Q 027045          149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       149 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~  217 (229)
                      .|..+++|++|++++|.++ .+|..+.  ++|++|++++|++++ +|...+.++++|++|++++|.++.
T Consensus        97 ~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A           97 AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCcccc
Confidence            8999999999999999998 5666554  789999999999987 665468899999999999998864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.48  E-value=1.1e-13  Score=126.58  Aligned_cols=111  Identities=24%  Similarity=0.237  Sum_probs=99.4

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ .+.+           +.+..|.++++|++|++++|++++..|.    .|.++++|++|++++|.+++..
T Consensus        56 ~~L~~L~Ls~n~l~~-----------i~~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~  120 (606)
T 3vq2_A           56 SELQWLDLSRCEIET-----------IEDKAWHGLHHLSNLILTGNPIQSFSPG----SFSGLTSLENLVAVETKLASLE  120 (606)
T ss_dssp             TTCCEEECTTCCCCE-----------ECTTTTTTCTTCCEEECTTCCCCCCCTT----SSTTCTTCCEEECTTSCCCCSS
T ss_pred             ccCcEEeCCCCcccc-----------cCHHHhhchhhcCEeECCCCcccccChh----hcCCcccCCEEEccCCcccccc
Confidence            4688899998 7765           5567789999999999999999998888    9999999999999999999777


Q ss_pred             cccccCCCCccEEeccCCcCCC-CCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +..++.+++|++|++++|++++ .+|. .++++++|++|++++|++++.
T Consensus       121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          121 SFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             SSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEE
T ss_pred             ccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceec
Confidence            7889999999999999999985 5687 899999999999999999876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.48  E-value=2.9e-13  Score=114.97  Aligned_cols=120  Identities=23%  Similarity=0.291  Sum_probs=86.4

Q ss_pred             CCCCCCCceecC---------CCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccc
Q 027045           78 CCDDWEGVKCNA---------TTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAY  147 (229)
Q Consensus        78 ~C~~w~gv~C~~---------~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  147 (229)
                      .| .|+.+.|..         ....++.|++++ ++.+           +....|.++++|++|++++|++++..|.   
T Consensus        30 ~c-~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~---   94 (330)
T 1xku_A           30 QC-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----------IKDGDFKNLKNLHTLILINNKISKISPG---   94 (330)
T ss_dssp             EE-ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----------BCTTTTTTCTTCCEEECCSSCCCCBCTT---
T ss_pred             cC-CCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-----------eChhhhccCCCCCEEECCCCcCCeeCHH---
Confidence            35 677788753         123577888888 7665           4445678888888888888888887777   


Q ss_pred             cccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCC
Q 027045          148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       148 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~  217 (229)
                       .|..+++|++|++++|.++ .+|..+.  ++|++|++++|++++ ++...+.++++|++|++++|.+..
T Consensus        95 -~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A           95 -AFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             -TTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             -HhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCc
Confidence             8888888888888888887 4555443  577777777777776 444356777777777777776653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=9.9e-14  Score=107.81  Aligned_cols=107  Identities=24%  Similarity=0.265  Sum_probs=70.4

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCC-CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPF-EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .++.|++++ ++..           +  ..+..+ ++|++|++++|.+++.  .    .+..+++|++|++++|.+++..
T Consensus        20 ~L~~L~l~~n~l~~-----------i--~~~~~~~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N~l~~~~   80 (176)
T 1a9n_A           20 RDRELDLRGYKIPV-----------I--ENLGATLDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNNRICRIG   80 (176)
T ss_dssp             SCEEEECTTSCCCS-----------C--CCGGGGTTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSSCCCEEC
T ss_pred             CceEEEeeCCCCch-----------h--HHhhhcCCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCCcccccC
Confidence            467777777 5553           1  112333 3777777777777774  3    6777777777777777777543


Q ss_pred             cccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCCcCCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      +..+..+++|++|++++|+++. +|. ..+..+++|++|++++|+++..+
T Consensus        81 ~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~  129 (176)
T 1a9n_A           81 EGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKK  129 (176)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             cchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcH
Confidence            3444677777777777777765 553 24667777777777777776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.48  E-value=2.4e-13  Score=114.08  Aligned_cols=98  Identities=28%  Similarity=0.311  Sum_probs=86.8

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      +.+..|..+++|++|++++|++++..+.    .|..+++|++|++++|+++...+..+..+++|++|+|++|+++. +|.
T Consensus       115 l~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~  189 (290)
T 1p9a_G          115 LPLGALRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPK  189 (290)
T ss_dssp             CCSSTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred             cCHHHHcCCCCCCEEECCCCCCCccChh----hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cCh
Confidence            4456789999999999999999997776    78999999999999999996666677899999999999999997 988


Q ss_pred             hhcCCCCCCCEEeccCCcCCCCCC
Q 027045          197 QGLANLRYLQVLDLSGNFNITSGS  220 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N~l~~~~~  220 (229)
                       .+..+.+|+++++++|++...+.
T Consensus       190 -~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          190 -GFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             -TTTTTCCCSEEECCSCCBCCSGG
T ss_pred             -hhcccccCCeEEeCCCCccCcCc
Confidence             67788999999999999987543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.47  E-value=9.9e-14  Score=109.73  Aligned_cols=116  Identities=22%  Similarity=0.208  Sum_probs=97.9

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  171 (229)
                      +++.|++++ .+..           +.  .+..+++|++|++++|.++..  .    .+..+++|++|++++|.+++..|
T Consensus        45 ~L~~L~l~~n~i~~-----------l~--~l~~l~~L~~L~l~~n~~~~~--~----~l~~l~~L~~L~l~~n~l~~~~~  105 (197)
T 4ezg_A           45 SLTYITLANINVTD-----------LT--GIEYAHNIKDLTINNIHATNY--N----PISGLSNLERLRIMGKDVTSDKI  105 (197)
T ss_dssp             TCCEEEEESSCCSC-----------CT--TGGGCTTCSEEEEESCCCSCC--G----GGTTCTTCCEEEEECTTCBGGGS
T ss_pred             CccEEeccCCCccC-----------hH--HHhcCCCCCEEEccCCCCCcc--h----hhhcCCCCCEEEeECCccCcccC
Confidence            578888888 6653           22  467889999999999987752  3    78899999999999999998788


Q ss_pred             ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCc-CCCCCCcccCCCCC
Q 027045          172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF-NITSGSLTRLGRLL  228 (229)
Q Consensus       172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~  228 (229)
                      ..+..+++|++|++++|++++..|. .+..+++|++|++++|+ ++..+.+..+.+|.
T Consensus       106 ~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~  162 (197)
T 4ezg_A          106 PNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMPLKTLPELK  162 (197)
T ss_dssp             CCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCCGGGGGCSSCC
T ss_pred             hhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccccHhhcCCCCCC
Confidence            8999999999999999999985665 79999999999999998 88876666666553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.47  E-value=3.3e-13  Score=117.19  Aligned_cols=119  Identities=18%  Similarity=0.206  Sum_probs=97.5

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  171 (229)
                      .++.+++++ .+..           ++...|..+++|++|++++|.+++..+.    .|..+++|++|++++|.+++..|
T Consensus        46 ~l~~l~l~~~~l~~-----------l~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~  110 (390)
T 3o6n_A           46 NQKIVTFKNSTMRK-----------LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPP  110 (390)
T ss_dssp             CCSEEEEESCEESE-----------ECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CceEEEecCCchhh-----------CChhHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCH
Confidence            455666666 4443           5556678889999999999999997777    89999999999999999998778


Q ss_pred             ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC--CcccCCCC
Q 027045          172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG--SLTRLGRL  227 (229)
Q Consensus       172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L  227 (229)
                      ..++.+++|++|++++|+++. +|...|.++++|++|++++|.+++..  .+..+.+|
T Consensus       111 ~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A          111 HVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred             HHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence            889999999999999999997 77645789999999999999998773  35555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=7.3e-14  Score=131.23  Aligned_cols=170  Identities=16%  Similarity=0.084  Sum_probs=76.2

Q ss_pred             CHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCcEEEEecCC-CccccccCCCC---
Q 027045           37 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSG---  112 (229)
Q Consensus        37 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C~~w~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~---  112 (229)
                      .+.+.+++.+++.+....   .+.  ....|..   . ....+ .|.++.+.  ..+++.++|.+ .+.. .+....   
T Consensus       130 ~~~~~~~l~~~~~~~~~~---~~~--~~~~~~~---~-~~~~~-~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~~l~~l  196 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDS---KTA--KKQQPTG---D-STPSG-TATNSAVS--TPLTPKIELFANGKDE-ANQALLQHK  196 (727)
T ss_dssp             --CCCHHHHHHHHHHHHH---HTT--C-----------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccc---cCc--ccCCCcC---C-CCccc-cCCCceec--CCccceEEeeCCCCCc-chhhHhhcC
Confidence            345778899999877521   111  3445655   1 34455 78888774  45677777755 3332 111100   


Q ss_pred             -----Cc---------cccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCC
Q 027045          113 -----SA---------LLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLT  178 (229)
Q Consensus       113 -----~~---------~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  178 (229)
                           .+         ..+.+..|..++.|+.|+|++|.+.. +|.    .+..+++|++|+|++|.|+ .+|..|+.++
T Consensus       197 ~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  270 (727)
T 4b8c_D          197 KLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISA----NIFKYDFLTRLYLNGNSLT-ELPAEIKNLS  270 (727)
T ss_dssp             -------------------------CCCCCCEEECTTSCCSC-CCG----GGGGCCSCSCCBCTTSCCS-CCCGGGGGGT
T ss_pred             ccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CCh----hhcCCCCCCEEEeeCCcCc-ccChhhhCCC
Confidence                 00         01223446666777777777777774 444    5556777777777777776 5666677777


Q ss_pred             CccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC-CcccCCCC
Q 027045          179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG-SLTRLGRL  227 (229)
Q Consensus       179 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L  227 (229)
                      +|++|+|++|+|+. +|. .|+++++|++|+|++|.|+.++ .+..+.+|
T Consensus       271 ~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L  318 (727)
T 4b8c_D          271 NLRVLDLSHNRLTS-LPA-ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNL  318 (727)
T ss_dssp             TCCEEECTTSCCSS-CCS-SGGGGTTCSEEECCSSCCCCCCSSTTSCTTC
T ss_pred             CCCEEeCcCCcCCc-cCh-hhcCCCCCCEEECCCCCCCccChhhhcCCCc
Confidence            77777777777764 665 5667777777777777766553 34444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=4.3e-13  Score=123.08  Aligned_cols=106  Identities=20%  Similarity=0.209  Sum_probs=90.5

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      ++...|..+++|++|++++|.+++..|.    .|..+++|++|++++|.+++..|..|+.+++|++|+|++|.+++ +|.
T Consensus        66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~  140 (597)
T 3oja_B           66 LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPR  140 (597)
T ss_dssp             ECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred             cCHHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCH
Confidence            5566678889999999999999998887    89999999999999999998888888999999999999999997 776


Q ss_pred             hhcCCCCCCCEEeccCCcCCCCC--CcccCCCC
Q 027045          197 QGLANLRYLQVLDLSGNFNITSG--SLTRLGRL  227 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L  227 (229)
                      ..|+++++|++|++++|.+++..  .+..+.+|
T Consensus       141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  173 (597)
T 3oja_B          141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  173 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence            46789999999999999998874  35555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.46  E-value=2.1e-13  Score=114.62  Aligned_cols=97  Identities=27%  Similarity=0.270  Sum_probs=87.3

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      +..+..+++|++|++++|++++..|.    .|..+++|++|++++|.+++..+..+..+++|++|++++|++++..|. .
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~  242 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-E  242 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS-S
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHH----HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH-H
Confidence            45688899999999999999998788    899999999999999999987777899999999999999999986665 7


Q ss_pred             cCCCC-CCCEEeccCCcCCCCCC
Q 027045          199 LANLR-YLQVLDLSGNFNITSGS  220 (229)
Q Consensus       199 ~~~l~-~L~~L~L~~N~l~~~~~  220 (229)
                      +..++ +|++|++++|++++.+.
T Consensus       243 ~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEECSGG
T ss_pred             HHhhhccCCEEEccCCCeecccC
Confidence            88885 99999999999988654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.45  E-value=1e-13  Score=106.64  Aligned_cols=110  Identities=23%  Similarity=0.176  Sum_probs=94.6

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ .+.+           +  ..+..+++|++|++++|++++.+|.    .+..+++|++|++++|.+++..
T Consensus        49 ~~L~~L~l~~n~l~~-----------~--~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~  111 (168)
T 2ell_A           49 VNLEFLSLINVGLIS-----------V--SNLPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNKLKDIS  111 (168)
T ss_dssp             GGCCEEEEESSCCCC-----------C--SSCCCCSSCCEEEEESCCCCSCCCH----HHHHCTTCCEEECBSSSCCSSG
T ss_pred             CCCCEEeCcCCCCCC-----------h--hhhccCCCCCEEECcCCcCchHHHH----HHhhCCCCCEEeccCCccCcch
Confidence            4688999998 7765           2  5688899999999999999997776    7777999999999999999642


Q ss_pred             c-ccccCCCCccEEeccCCcCCCCCCh---hhcCCCCCCCEEeccCCcCCCCC
Q 027045          171 L-PYLNTLTSLTTLILSDNSIEGSRTK---QGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       171 p-~~l~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      + ..+..+++|++|++++|++++ +|.   ..+..+++|++|++++|.+...+
T Consensus       112 ~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          112 TLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             GGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             hHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            2 789999999999999999998 554   36899999999999999987764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.45  E-value=1.2e-13  Score=124.02  Aligned_cols=116  Identities=23%  Similarity=0.209  Sum_probs=95.0

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ .+.+           +.+..|.++++|++|++++|++++..|.    .|..+++|++|++++|.++ .+
T Consensus        21 ~~L~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~l   84 (520)
T 2z7x_B           21 QKTTILNISQNYISE-----------LWTSDILSLSKLRILIISHNRIQYLDIS----VFKFNQELEYLDLSHNKLV-KI   84 (520)
T ss_dssp             TTCSEEECCSSCCCC-----------CCHHHHTTCTTCCEEECCSSCCCEEEGG----GGTTCTTCCEEECCSSCCC-EE
T ss_pred             ccccEEECCCCcccc-----------cChhhccccccccEEecCCCccCCcChH----HhhcccCCCEEecCCCcee-ec
Confidence            5788899988 7765           4446788899999999999999998788    8999999999999999998 56


Q ss_pred             cccccCCCCccEEeccCCcCCC-CCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      |..  .+++|++|++++|++++ .+|. .++++++|++|++++|.+++. .+..+.+|
T Consensus        85 p~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L  138 (520)
T 2z7x_B           85 SCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEKS-SVLPIAHL  138 (520)
T ss_dssp             ECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCGG-GGGGGTTS
T ss_pred             Ccc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccchh-hccccccc
Confidence            665  78999999999999987 4566 789999999999999998763 34434333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.45  E-value=3.5e-13  Score=122.53  Aligned_cols=116  Identities=28%  Similarity=0.251  Sum_probs=97.4

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ .+.+           +.+..|.++++|++|++++|++++..|.    .|..+++|++|++++|.++ .+
T Consensus        52 ~~L~~L~Ls~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~l  115 (562)
T 3a79_B           52 PRTKALSLSQNSISE-----------LRMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NI  115 (562)
T ss_dssp             TTCCEEECCSSCCCC-----------CCGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EE
T ss_pred             CCcCEEECCCCCccc-----------cChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-cc
Confidence            5788999998 7765           5556789999999999999999998888    8999999999999999999 56


Q ss_pred             cccccCCCCccEEeccCCcCCC-CCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      |..  .+++|++|++++|++++ .+|. .|+++++|++|++++|++++. .+..+.+|
T Consensus       116 p~~--~l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L  169 (562)
T 3a79_B          116 SCC--PMASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQL-DLLPVAHL  169 (562)
T ss_dssp             CSC--CCTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCTT-TTGGGTTS
T ss_pred             Ccc--ccccCCEEECCCCCccccCchH-hhcccCcccEEecCCCccccC-chhhhhhc
Confidence            765  89999999999999987 3345 799999999999999999874 34444333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.44  E-value=3.5e-13  Score=119.91  Aligned_cols=122  Identities=24%  Similarity=0.259  Sum_probs=76.8

Q ss_pred             CcEEEEecCC-CccccccCCCCC-------------ccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCc
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGS-------------ALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLK  157 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~-------------~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~  157 (229)
                      .+++.|+|++ .+.+..|.....             +..+....|.++++|++|++++|++++..|.    .|..+++|+
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~  131 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLK  131 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCC
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh----HccccccCC
Confidence            4577788877 665532222111             1122333456666677777777777666565    666677777


Q ss_pred             EEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          158 MLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       158 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +|++++|.+++..|..|..+++|+.|++++|++++ +|...+.++++|+.|++++|.+.+.
T Consensus       132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             EEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEe
Confidence            77777777766666667777777777777777766 5544567777777777777776665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=5.6e-13  Score=119.68  Aligned_cols=118  Identities=22%  Similarity=0.146  Sum_probs=73.9

Q ss_pred             CCCCceecCCCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccC-CCCCCcE
Q 027045           81 DWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFG-SLKQLKM  158 (229)
Q Consensus        81 ~w~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~l~~L~~  158 (229)
                      .+.++.|.. -..++.|++++ .+.+           +.+..|..+++|++|++++|.+++..|.    .+. .+++|++
T Consensus       110 ~l~~~~~~~-l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L~~  173 (487)
T 3oja_A          110 NISRVSCSR-GQGKKNIYLANNKITM-----------LRDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEH  173 (487)
T ss_dssp             CCCCEEECC-CSSCEEEECCSSCCCS-----------GGGBCGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCE
T ss_pred             cCCCCCccc-cCCCCEEECCCCCCCC-----------CCchhhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcccE
Confidence            344454532 23466666666 5554           2334456667777777777777776665    554 5677777


Q ss_pred             EEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          159 LNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       159 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      |++++|.+++. |. +..+++|++|+|++|.+++ +|. .+..+++|+.|++++|.++++
T Consensus       174 L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~l  229 (487)
T 3oja_A          174 LNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLVLI  229 (487)
T ss_dssp             EECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCCEE
T ss_pred             EecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCH-hHcCCCCccEEEecCCcCccc
Confidence            77777777643 22 3346677777777777776 555 466677777777777777664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.42  E-value=4.8e-13  Score=121.08  Aligned_cols=122  Identities=24%  Similarity=0.286  Sum_probs=102.3

Q ss_pred             CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC
Q 027045           91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS  169 (229)
Q Consensus        91 ~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~  169 (229)
                      ...++.|++++ ++.+           +....|.++++|++|++++|++++..|.    .|..+++|++|++++|.+++.
T Consensus        27 ~~~l~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~   91 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRH-----------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSL   91 (570)
T ss_dssp             CSSCCEEECCSCCCCE-----------ECTTTTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEE
T ss_pred             cccccEEEccCCccCc-----------cChhHhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCcc
Confidence            34688999999 7765           5556788999999999999999997777    899999999999999999987


Q ss_pred             CcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC---CCcccCCCCC
Q 027045          170 ILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRLL  228 (229)
Q Consensus       170 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~  228 (229)
                      .|..|+.+++|++|++++|++++ ++...++++++|++|++++|.+++.   ..+..+.+|.
T Consensus        92 ~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~  152 (570)
T 2z63_A           92 ALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  152 (570)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             CHhhhcCcccccccccccccccc-CCCccccccccccEEecCCCccceecChhhhcccCCCC
Confidence            77889999999999999999998 6654689999999999999998873   3455555553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.42  E-value=5e-13  Score=122.28  Aligned_cols=106  Identities=24%  Similarity=0.328  Sum_probs=93.7

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  171 (229)
                      .++.|++++ ++.+           ++ . |..+++|+.|++++|+|+. +|.    .|+.+++|+.|++++|.+++ +|
T Consensus       442 ~L~~L~Ls~n~l~~-----------lp-~-~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~Ls~N~l~~-lp  502 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-----------LC-H-LEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALEN-VD  502 (567)
T ss_dssp             TCSEEECTTSCCSS-----------CC-C-GGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCC-CG
T ss_pred             CceEEEecCCCCCC-----------Cc-C-ccccccCcEeecCcccccc-cch----hhhcCCCCCEEECCCCCCCC-Cc
Confidence            367799998 7765           22 2 7889999999999999995 788    99999999999999999996 67


Q ss_pred             ccccCCCCccEEeccCCcCCCCC-ChhhcCCCCCCCEEeccCCcCCCCC
Q 027045          172 PYLNTLTSLTTLILSDNSIEGSR-TKQGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       172 ~~l~~l~~L~~L~Ls~N~l~~~i-p~~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                       .++.+++|++|+|++|++++.. |. .++.+++|++|++++|++++.+
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSS
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCc
Confidence             8999999999999999999943 76 8999999999999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=6e-13  Score=100.31  Aligned_cols=97  Identities=25%  Similarity=0.238  Sum_probs=84.0

Q ss_pred             CCCCCcEEeCCCCcCC-CccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045          124 PFEELQRLDLPGNWFT-GIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (229)
Q Consensus       124 ~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  202 (229)
                      ..++|+.|++++|.++ +.+|.    .+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|. .+..+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l   87 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKC   87 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHC
T ss_pred             CCccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhC
Confidence            3478999999999998 67887    889999999999999999965  7789999999999999999986776 77789


Q ss_pred             CCCCEEeccCCcCCCC---CCcccCCCC
Q 027045          203 RYLQVLDLSGNFNITS---GSLTRLGRL  227 (229)
Q Consensus       203 ~~L~~L~L~~N~l~~~---~~~~~l~~L  227 (229)
                      ++|++|++++|.+++.   ..+..+.+|
T Consensus        88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           88 PNLTHLNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             TTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred             CCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence            9999999999999985   345555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=8.8e-13  Score=102.14  Aligned_cols=98  Identities=29%  Similarity=0.361  Sum_probs=81.9

Q ss_pred             CCCCceecC---------CCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccccc
Q 027045           81 DWEGVKCNA---------TTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF  150 (229)
Q Consensus        81 ~w~gv~C~~---------~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  150 (229)
                      .|..+.|..         ....++.|+|++ ++.+           +.+..|.++++|++|+|++|+|+++.+.    .|
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f   74 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITK-----------LEPGVFDRLTQLTRLDLDNNQLTVLPAG----VF   74 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCCCCTT----TT
T ss_pred             CCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCc-----------cChhhhcCcccCCEEECCCCCcCccChh----hc
Confidence            566677753         123567788887 6665           5567789999999999999999997776    78


Q ss_pred             CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCC
Q 027045          151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS  193 (229)
Q Consensus       151 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  193 (229)
                      ..+++|++|++++|++++..+..|..+++|++|+|++|.++..
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999999999999999977777799999999999999999873

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.40  E-value=4.5e-13  Score=125.85  Aligned_cols=107  Identities=25%  Similarity=0.286  Sum_probs=92.8

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      ..++.|+|++ .+..           +... +..+++|++|+|++|.|+. +|.    .|..+++|++|+|++|.|+ .+
T Consensus       224 ~~L~~L~Ls~n~l~~-----------l~~~-~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          224 QLWHALDLSNLQIFN-----------ISAN-IFKYDFLTRLYLNGNSLTE-LPA----EIKNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             CCCCEEECTTSCCSC-----------CCGG-GGGCCSCSCCBCTTSCCSC-CCG----GGGGGTTCCEEECTTSCCS-SC
T ss_pred             CCCcEEECCCCCCCC-----------CChh-hcCCCCCCEEEeeCCcCcc-cCh----hhhCCCCCCEEeCcCCcCC-cc
Confidence            4577788888 6553           2222 3478999999999999994 787    8999999999999999999 78


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      |..|+.+++|++|+|++|.|+. +|. .|+++++|++|+|++|+|++.
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVTT-LPW-EFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCCC-CCS-STTSCTTCCCEECTTSCCCSH
T ss_pred             ChhhcCCCCCCEEECCCCCCCc-cCh-hhhcCCCccEEeCCCCccCCC
Confidence            9999999999999999999986 998 699999999999999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.39  E-value=7.7e-13  Score=120.89  Aligned_cols=111  Identities=22%  Similarity=0.156  Sum_probs=87.2

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ .+.+           +.+..|.++++|++|++++|++++..|.    .|..+++|++|++++|.+++..
T Consensus        57 ~~L~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~~l~  121 (606)
T 3t6q_A           57 INLTFLDLTRCQIYW-----------IHEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSID  121 (606)
T ss_dssp             TTCSEEECTTCCCCE-----------ECTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTCCEEECTTSCCSCGG
T ss_pred             ccceEEECCCCccce-----------eChhhccCccccCeeeCCCCcccccChh----hhcccccccEeeccccCcccCC
Confidence            4678888888 7765           5556778888888888888888887777    8888888888888888888666


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      |..++.+++|++|++++|++++ ++...+..+++|++|++++|.+++.
T Consensus       122 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A          122 FIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             GSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred             cchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCccccc
Confidence            7778888888888888888887 3211355588888888888888765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.39  E-value=2.5e-12  Score=107.86  Aligned_cols=96  Identities=36%  Similarity=0.393  Sum_probs=67.6

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      .+..+++|++|++++|++++. +     .+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++ ++.  +.
T Consensus       107 ~l~~l~~L~~L~L~~n~i~~~-~-----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~--l~  175 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LA  175 (291)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GT
T ss_pred             hhccCCCCCEEECCCCcCCCC-h-----hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh--hc
Confidence            366677777777777777763 3     566777777777777777753  457777777888888777776 543  67


Q ss_pred             CCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          201 NLRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      .+++|++|++++|.+++.+.+..+.+|
T Consensus       176 ~l~~L~~L~L~~N~i~~l~~l~~l~~L  202 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISDLRALAGLKNL  202 (291)
T ss_dssp             TCTTCCEEECCSSCCCBCGGGTTCTTC
T ss_pred             CCCccCEEECCCCcCCCChhhccCCCC
Confidence            777888888888877776555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=2.9e-12  Score=99.63  Aligned_cols=93  Identities=16%  Similarity=0.144  Sum_probs=79.9

Q ss_pred             CcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCE
Q 027045          128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV  207 (229)
Q Consensus       128 L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~  207 (229)
                      -+.+++++|+++. +|.    .+.  ++|++|++++|.+++..|..|..+++|++|+|++|+|++ +|...|.++++|++
T Consensus        14 ~~~l~~~~n~l~~-iP~----~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPA----GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCSS-CCS----CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCCCc-cCC----CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhE
Confidence            3789999999987 565    553  899999999999998889999999999999999999998 77656789999999


Q ss_pred             EeccCCcCCCCCC--cccCCCCC
Q 027045          208 LDLSGNFNITSGS--LTRLGRLL  228 (229)
Q Consensus       208 L~L~~N~l~~~~~--~~~l~~L~  228 (229)
                      |+|++|+|++.+.  +..+.+|.
T Consensus        86 L~L~~N~l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           86 LDLNDNHLKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCS
T ss_pred             EECCCCccceeCHHHhccccCCC
Confidence            9999999998842  55566553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.39  E-value=4.8e-12  Score=108.49  Aligned_cols=123  Identities=24%  Similarity=0.264  Sum_probs=98.8

Q ss_pred             CCceecCCCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEc
Q 027045           83 EGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNL  161 (229)
Q Consensus        83 ~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~L  161 (229)
                      ....|..  ..+  .+.++ ++.. +|          .. +  .++|++|++++|++++..+.    .|..+++|++|++
T Consensus        26 ~~~~C~~--~~~--c~~~~~~l~~-iP----------~~-~--~~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L   83 (353)
T 2z80_A           26 ASLSCDR--NGI--CKGSSGSLNS-IP----------SG-L--TEAVKSLDLSNNRITYISNS----DLQRCVNLQALVL   83 (353)
T ss_dssp             -CCEECT--TSE--EECCSTTCSS-CC----------TT-C--CTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEC
T ss_pred             cCCCCCC--CeE--eeCCCCCccc-cc----------cc-c--cccCcEEECCCCcCcccCHH----HhccCCCCCEEEC
Confidence            4567743  333  67777 6653 22          21 1  25899999999999997776    8999999999999


Q ss_pred             CCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCC---cccCCCCC
Q 027045          162 GDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS---LTRLGRLL  228 (229)
Q Consensus       162 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~---~~~l~~L~  228 (229)
                      ++|.+++..|..+..+++|++|++++|++++ +|...+.++++|++|++++|++++.+.   +..+.+|.
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           84 TSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             CCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            9999998888889999999999999999998 777569999999999999999998754   55555553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=3e-12  Score=105.92  Aligned_cols=111  Identities=29%  Similarity=0.355  Sum_probs=78.1

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ ++.+           +..  +..+++|++|++++|++++ +|.     +.. ++|++|++++|.+++ +
T Consensus        63 ~~L~~L~L~~N~i~~-----------~~~--l~~l~~L~~L~L~~N~l~~-l~~-----~~~-~~L~~L~L~~N~l~~-~  121 (263)
T 1xeu_A           63 TNLKELHLSHNQISD-----------LSP--LKDLTKLEELSVNRNRLKN-LNG-----IPS-ACLSRLFLDNNELRD-T  121 (263)
T ss_dssp             TTCCEEECCSSCCCC-----------CGG--GTTCSSCCEEECCSSCCSC-CTT-----CCC-SSCCEEECCSSCCSB-S
T ss_pred             CCCCEEECCCCccCC-----------Chh--hccCCCCCEEECCCCccCC-cCc-----ccc-CcccEEEccCCccCC-C
Confidence            4678888888 6665           222  6777888888888888887 342     223 778888888888775 3


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      + .+..+++|++|++++|++++ ++  .+..+++|++|++++|++++...+..+.+|
T Consensus       122 ~-~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L  174 (263)
T 1xeu_A          122 D-SLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNTGGLTRLKKV  174 (263)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred             h-hhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcchHHhccCCCC
Confidence            3 47777888888888888876 54  477778888888888887776555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.37  E-value=6.7e-12  Score=114.08  Aligned_cols=130  Identities=19%  Similarity=0.226  Sum_probs=80.2

Q ss_pred             CCcEEEEecCC-CccccccCCCCCcc---c----------cC--CcccCCCCCCcEEeCCCCcCCCccccccccccCCCC
Q 027045           91 TRRVMQLSLNE-TIKFNYSSGSGSAL---L----------LN--MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK  154 (229)
Q Consensus        91 ~~~v~~L~L~~-~l~~~~~~~~~~~~---~----------l~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~  154 (229)
                      ...++.|++++ .+.+.+|.......   .          +.  +..|.++++|++|++++|++++.+|.   ..+..++
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~l~  428 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD---RTCAWAE  428 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS---CCCCCCT
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh---hhhcCcc
Confidence            34567777777 66654443322111   1          11  12366777777788887777774443   0466677


Q ss_pred             CCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCC--cccCCCC
Q 027045          155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS--LTRLGRL  227 (229)
Q Consensus       155 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L  227 (229)
                      +|++|++++|.+++.+|..+.  ++|++|++++|+++. +|. .+.++++|++|++++|+++.++.  +..+.+|
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  499 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSL  499 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCT-TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTC
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cCh-hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCC
Confidence            777777777777665555443  577777777777775 776 45577778888888887776643  4444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.37  E-value=4e-12  Score=106.63  Aligned_cols=113  Identities=31%  Similarity=0.300  Sum_probs=95.0

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ ++.+           +..  +..+++|++|++++|++++ +|     .+..+++|++|++++|.+++ +
T Consensus        68 ~~L~~L~L~~n~l~~-----------~~~--l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~L~~n~i~~-~  127 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTD-----------IKP--LANLKNLGWLFLDENKVKD-LS-----SLKDLKKLKSLSLEHNGISD-I  127 (291)
T ss_dssp             TTCCEEECCSSCCCC-----------CGG--GTTCTTCCEEECCSSCCCC-GG-----GGTTCTTCCEEECTTSCCCC-C
T ss_pred             CCCCEEEccCCccCC-----------Ccc--cccCCCCCEEECCCCcCCC-Ch-----hhccCCCCCEEECCCCcCCC-C
Confidence            4688899988 7765           222  7889999999999999998 44     68999999999999999995 3


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                       +.+..+++|++|++++|++++ ++  .+..+++|++|++++|.+++...+..+.+|.
T Consensus       128 -~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~  181 (291)
T 1h6t_A          128 -NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ  181 (291)
T ss_dssp             -GGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred             -hhhcCCCCCCEEEccCCcCCc-ch--hhccCCCCCEEEccCCccccchhhcCCCccC
Confidence             568899999999999999998 53  6899999999999999999986566666553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.37  E-value=4e-12  Score=107.40  Aligned_cols=96  Identities=27%  Similarity=0.327  Sum_probs=63.6

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      .+..+++|++|++++|++++ ++     .+..+++|++|++++|.+++. +. +..+++|++|++++|++++ ++.  +.
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~--l~  170 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITD-VT-----PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP--LA  170 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG--GT
T ss_pred             hhcCCCCCCEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh--hc
Confidence            35566667777777777666 23     466677777777777777643 32 6677777777777777776 543  66


Q ss_pred             CCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          201 NLRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      .+++|++|++++|.+++...+..+.+|
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~l~~l~~L  197 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISPLASLPNL  197 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             CCCCCCEEECCCCccCcChhhcCCCCC
Confidence            777777777777777776555544444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.37  E-value=7e-12  Score=105.89  Aligned_cols=95  Identities=32%  Similarity=0.389  Sum_probs=67.6

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~  201 (229)
                      +..+++|++|++++|++++. +     .+..+++|++|++++|.+++ ++. +..+++|+.|++++|++++ ++.  +..
T Consensus       125 l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~  193 (308)
T 1h6u_A          125 LAGLSNLQVLYLDLNQITNI-S-----PLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP--LAS  193 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG--GGG
T ss_pred             hcCCCCCCEEECCCCccCcC-c-----cccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh--hcC
Confidence            66777788888888877763 3     36677778888888887774 333 7777778888888888776 543  677


Q ss_pred             CCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          202 LRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       202 l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      +++|++|++++|++++...+..+.+|
T Consensus       194 l~~L~~L~L~~N~l~~~~~l~~l~~L  219 (308)
T 1h6u_A          194 LPNLIEVHLKNNQISDVSPLANTSNL  219 (308)
T ss_dssp             CTTCCEEECTTSCCCBCGGGTTCTTC
T ss_pred             CCCCCEEEccCCccCccccccCCCCC
Confidence            77788888888877776555545444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.37  E-value=1.7e-12  Score=123.69  Aligned_cols=116  Identities=27%  Similarity=0.308  Sum_probs=96.9

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  171 (229)
                      .++.|++++ .+.+           +.+..|..+++|+.|++++|++++..|.    .|..+++|++|++++|.+++..|
T Consensus       267 ~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~  331 (844)
T 3j0a_A          267 SVRHLDLSHGFVFS-----------LNSRVFETLKDLKVLNLAYNKINKIADE----AFYGLDNLQVLNLSYNLLGELYS  331 (844)
T ss_dssp             CCCEEECTTCCCCE-----------ECSCCSSSCCCCCEEEEESCCCCEECTT----TTTTCSSCCEEEEESCCCSCCCS
T ss_pred             CccEEECCCCcccc-----------cChhhhhcCCCCCEEECCCCcCCCCChH----HhcCCCCCCEEECCCCCCCccCH
Confidence            567777777 5554           4556788899999999999999998887    89999999999999999998888


Q ss_pred             ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccC
Q 027045          172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL  224 (229)
Q Consensus       172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l  224 (229)
                      ..+..+++|++|++++|++++ ++...|.++++|++|++++|.+++.+.++.|
T Consensus       332 ~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L  383 (844)
T 3j0a_A          332 SNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALTTIHFIPSI  383 (844)
T ss_dssp             CSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSCCCSSCCSC
T ss_pred             HHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCCcccCCCCc
Confidence            899999999999999999987 5554788999999999999999886554433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.37  E-value=1.8e-12  Score=120.04  Aligned_cols=98  Identities=29%  Similarity=0.273  Sum_probs=85.0

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      +....|.++++|++|++++|++++..|.    .|..+++|++|++++|.+++..|..++.+++|++|++++|++++ ++.
T Consensus        88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~  162 (680)
T 1ziw_A           88 LSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKS  162 (680)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCCCCSC----TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCH
T ss_pred             cChhhhccCCCCCEEECCCCccCccChh----HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCH
Confidence            4445688999999999999999997777    89999999999999999998888889999999999999999998 544


Q ss_pred             hhcC--CCCCCCEEeccCCcCCCCC
Q 027045          197 QGLA--NLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       197 ~~~~--~l~~L~~L~L~~N~l~~~~  219 (229)
                      ..+.  .+++|++|++++|.+++..
T Consensus       163 ~~~~~~~~~~L~~L~L~~n~l~~~~  187 (680)
T 1ziw_A          163 EELDIFANSSLKKLELSSNQIKEFS  187 (680)
T ss_dssp             HHHGGGTTCEESEEECTTCCCCCBC
T ss_pred             HHhhccccccccEEECCCCcccccC
Confidence            3544  5689999999999998863

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.36  E-value=3.4e-12  Score=108.36  Aligned_cols=87  Identities=29%  Similarity=0.288  Sum_probs=66.4

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  205 (229)
                      ++|++|++++|++++..|.    .|..+++|++|++++|.+++..+..+..+++|++|++++|+++. +|. .+..+++|
T Consensus       192 ~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~-~l~~l~~L  265 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG-GLADHKYI  265 (330)
T ss_dssp             TTCSEEECTTSCCCEECTG----GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCT-TTTTCSSC
T ss_pred             ccCCEEECCCCcCCccCHH----HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CCh-hhccCCCc
Confidence            5677777777777776666    77777888888888888876666677777888888888888775 776 67777888


Q ss_pred             CEEeccCCcCCCC
Q 027045          206 QVLDLSGNFNITS  218 (229)
Q Consensus       206 ~~L~L~~N~l~~~  218 (229)
                      ++|++++|++++.
T Consensus       266 ~~L~l~~N~i~~~  278 (330)
T 1xku_A          266 QVVYLHNNNISAI  278 (330)
T ss_dssp             CEEECCSSCCCCC
T ss_pred             CEEECCCCcCCcc
Confidence            8888888887776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.36  E-value=7.4e-12  Score=112.97  Aligned_cols=97  Identities=29%  Similarity=0.261  Sum_probs=86.0

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  205 (229)
                      ++|++|++++|++++..|.    .|..+++|++|++++|.+++..|..|..+++|++|++++|++++ ++...|+++++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHG----DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSL  100 (549)
T ss_dssp             TTCCEEECCSSCCCEECSS----TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTC
T ss_pred             CCccEEECcCCccCccChh----hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCC
Confidence            6899999999999998888    89999999999999999998888899999999999999999998 655479999999


Q ss_pred             CEEeccCCcCCCCC---CcccCCCC
Q 027045          206 QVLDLSGNFNITSG---SLTRLGRL  227 (229)
Q Consensus       206 ~~L~L~~N~l~~~~---~~~~l~~L  227 (229)
                      ++|++++|.+++.+   .+..+.+|
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             cEEECCCCcccccchhhhhhccCCc
Confidence            99999999998652   34445554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.36  E-value=5.2e-12  Score=104.45  Aligned_cols=112  Identities=21%  Similarity=0.324  Sum_probs=92.6

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|++++ ++..           +  ..+..+++|++|++++|++++. +     .+..+++|++|++++|++++ +
T Consensus        41 ~~L~~L~l~~n~i~~-----------l--~~l~~l~~L~~L~L~~N~i~~~-~-----~l~~l~~L~~L~L~~N~l~~-l  100 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQS-----------L--AGMQFFTNLKELHLSHNQISDL-S-----PLKDLTKLEELSVNRNRLKN-L  100 (263)
T ss_dssp             TTCSEEECTTSCCCC-----------C--TTGGGCTTCCEEECCSSCCCCC-G-----GGTTCSSCCEEECCSSCCSC-C
T ss_pred             CcCcEEECcCCCccc-----------c--hHHhhCCCCCEEECCCCccCCC-h-----hhccCCCCCEEECCCCccCC-c
Confidence            4578899988 6664           2  2577889999999999999984 4     47899999999999999995 4


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                      |. +.. ++|++|++++|++++ ++  .+.++++|++|++++|++++.+.+..+.+|.
T Consensus       101 ~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~  153 (263)
T 1xeu_A          101 NG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSIVMLGFLSKLE  153 (263)
T ss_dssp             TT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBCGGGGGCTTCC
T ss_pred             Cc-ccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCChHHccCCCCC
Confidence            54 333 899999999999998 65  5899999999999999999987666666653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.35  E-value=1.7e-12  Score=116.66  Aligned_cols=112  Identities=17%  Similarity=0.163  Sum_probs=94.1

Q ss_pred             EEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc
Q 027045           95 MQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY  173 (229)
Q Consensus        95 ~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  173 (229)
                      +.+++++ ++.. +|          .. +.  ++|++|++++|.+++..|.    .|..+++|++|++++|++++..|..
T Consensus         3 ~~l~ls~n~l~~-ip----------~~-~~--~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~   64 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VP----------KD-LS--QKTTILNISQNYISELWTS----DILSLSKLRILIISHNRIQYLDISV   64 (520)
T ss_dssp             CEEECTTSCCSS-CC----------CS-CC--TTCSEEECCSSCCCCCCHH----HHTTCTTCCEEECCSSCCCEEEGGG
T ss_pred             ceEecCCCCccc-cc----------cc-cc--ccccEEECCCCcccccChh----hccccccccEEecCCCccCCcChHH
Confidence            3578888 7764 33          22 22  7999999999999998877    8999999999999999999888999


Q ss_pred             ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC---CCcccCCCCC
Q 027045          174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRLL  228 (229)
Q Consensus       174 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~  228 (229)
                      |+.+++|++|++++|++++ +|. .  .+++|++|++++|.+++.   ..+..+.+|.
T Consensus        65 ~~~l~~L~~L~Ls~N~l~~-lp~-~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~  118 (520)
T 2z7x_B           65 FKFNQELEYLDLSHNKLVK-ISC-H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK  118 (520)
T ss_dssp             GTTCTTCCEEECCSSCCCE-EEC-C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred             hhcccCCCEEecCCCceee-cCc-c--ccCCccEEeccCCccccccchhhhccCCcce
Confidence            9999999999999999996 887 3  899999999999999874   3455566554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.35  E-value=2e-12  Score=109.48  Aligned_cols=91  Identities=23%  Similarity=0.100  Sum_probs=55.5

Q ss_pred             cccCCCCCCcEEeCCCCcCCCcccccccccc-CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSF-GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      ..+..+++|++|++++|.+++..+.    .+ ..+++|++|++++|.+++. |. ...+++|++|++++|++++ +|. .
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~-~  209 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGP-E  209 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECG-G
T ss_pred             hhhhccCCCCEEECCCCCCCcccHH----HHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chh-h
Confidence            3455566677777777776665554    44 3466666666666666633 22 2346666666666666665 555 4


Q ss_pred             cCCCCCCCEEeccCCcCCCC
Q 027045          199 LANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +..+++|++|++++|+++++
T Consensus       210 ~~~l~~L~~L~L~~N~l~~l  229 (317)
T 3o53_A          210 FQSAAGVTWISLRNNKLVLI  229 (317)
T ss_dssp             GGGGTTCSEEECTTSCCCEE
T ss_pred             hcccCcccEEECcCCcccch
Confidence            66666666667666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=7e-13  Score=102.96  Aligned_cols=106  Identities=22%  Similarity=0.200  Sum_probs=90.9

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  171 (229)
                      .++.|++++ .+.+           +  ..|..+++|++|++++|+|++..+.    .|..+++|++|++++|.++ .+|
T Consensus        43 ~L~~L~Ls~N~l~~-----------~--~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~-~~~  104 (176)
T 1a9n_A           43 QFDAIDFSDNEIRK-----------L--DGFPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLV-ELG  104 (176)
T ss_dssp             CCSEEECCSSCCCE-----------E--CCCCCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSCCCC-CGG
T ss_pred             CCCEEECCCCCCCc-----------c--cccccCCCCCEEECCCCcccccCcc----hhhcCCCCCEEECCCCcCC-cch
Confidence            689999999 7776           3  5688899999999999999986555    5689999999999999997 466


Q ss_pred             c--cccCCCCccEEeccCCcCCCCCChh---hcCCCCCCCEEeccCCcCCC
Q 027045          172 P--YLNTLTSLTTLILSDNSIEGSRTKQ---GLANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       172 ~--~l~~l~~L~~L~Ls~N~l~~~ip~~---~~~~l~~L~~L~L~~N~l~~  217 (229)
                      .  .+..+++|++|++++|.++. +|..   .+..+++|++||+++|.+..
T Consensus       105 ~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          105 DLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             GGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             hhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            5  78999999999999999986 7762   38899999999999997644

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.35  E-value=6.9e-13  Score=112.13  Aligned_cols=89  Identities=22%  Similarity=0.157  Sum_probs=61.4

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC--Ccccc--cCCCCccEEeccCCcCCC--CCChhhc
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS--ILPYL--NTLTSLTTLILSDNSIEG--SRTKQGL  199 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~--~ip~~~~  199 (229)
                      ++|++|++++|++++..|.    .|..+++|++|++++|++.+.  .|..+  ..+++|++|++++|++++  .++...+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  224 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCE----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA  224 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTT----TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred             CCCcEEEeeCCCCccchHH----HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence            6777777777777776656    777777777777777776654  23333  677777788888777774  1333234


Q ss_pred             CCCCCCCEEeccCCcCCCC
Q 027045          200 ANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~  218 (229)
                      .++++|++|++++|++++.
T Consensus       225 ~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          225 AARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             HTTCCCSEEECTTSCCCSS
T ss_pred             hcCCCCCEEECCCCcCCcc
Confidence            5677888888888888774

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.34  E-value=5.6e-13  Score=112.68  Aligned_cols=99  Identities=20%  Similarity=0.132  Sum_probs=75.0

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCc--ccccccccc--CCCCCCcEEEcCCCCCCC--CCc-ccccCCCCccEEeccCCc
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGI--YENRAYDSF--GSLKQLKMLNLGDNFFND--SIL-PYLNTLTSLTTLILSDNS  189 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~--~~l~~L~~L~Ls~N~l~~--~~p-~~l~~l~~L~~L~Ls~N~  189 (229)
                      +.+..|..+++|++|++++|++.+.  .+.    .+  ..+++|++|++++|.+++  .++ ..+..+++|++|++++|+
T Consensus       164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          164 FSCEQVRVFPALSTLDLSDNPELGERGLIS----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             CCTTTCCCCSSCCEEECCSCTTCHHHHHHH----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             chHHHhccCCCCCEEECCCCCcCcchHHHH----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence            3446678889999999999998775  233    33  788999999999999883  122 334577899999999999


Q ss_pred             CCCCCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045          190 IEGSRTKQGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       190 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      +++..|...+..+++|++|++++|.++.++
T Consensus       240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip  269 (312)
T 1wwl_A          240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVP  269 (312)
T ss_dssp             CCSSCCCSCCCCCTTCCEEECTTSCCSSCC
T ss_pred             CCcccchhhhhhcCCCCEEECCCCccChhh
Confidence            988554335667889999999999988653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.34  E-value=6.7e-13  Score=107.76  Aligned_cols=107  Identities=16%  Similarity=0.166  Sum_probs=58.8

Q ss_pred             CcEEEEecCC-C-ccccccCCCCCccccCCcccCCCCCCcEEeCCC-CcCCCccccccccccCCCCCCcEEEcCCCCCCC
Q 027045           92 RRVMQLSLNE-T-IKFNYSSGSGSALLLNMSLFHPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND  168 (229)
Q Consensus        92 ~~v~~L~L~~-~-l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~  168 (229)
                      .+++.|++++ + +..           +....|.++++|++|++++ |++++..+.    .|..+++|++|++++|.+++
T Consensus        55 ~~L~~L~l~~n~~l~~-----------i~~~~f~~l~~L~~L~l~~~n~l~~i~~~----~f~~l~~L~~L~l~~n~l~~  119 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQ-----------LESHSFYNLSKVTHIEIRNTRNLTYIDPD----ALKELPLLKFLGIFNTGLKM  119 (239)
T ss_dssp             TTCCEEEEECCSSCCE-----------ECTTTEESCTTCCEEEEEEETTCCEECTT----SEECCTTCCEEEEEEECCCS
T ss_pred             CCCcEEeCCCCCCcce-----------eCHhHcCCCcCCcEEECCCCCCeeEcCHH----HhCCCCCCCEEeCCCCCCcc
Confidence            4577888887 4 443           3344455566666666665 666654444    55555566666666655553


Q ss_pred             CCcccccCCCCcc---EEeccCC-cCCCCCChhhcCCCCCCC-EEeccCCcCC
Q 027045          169 SILPYLNTLTSLT---TLILSDN-SIEGSRTKQGLANLRYLQ-VLDLSGNFNI  216 (229)
Q Consensus       169 ~~p~~l~~l~~L~---~L~Ls~N-~l~~~ip~~~~~~l~~L~-~L~L~~N~l~  216 (229)
                       +|. +..+++|+   +|++++| ++++ +|...|.++++|+ +|++++|.++
T Consensus       120 -lp~-~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          120 -FPD-LTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             -CCC-CTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             -ccc-cccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCc
Confidence             443 44444554   5555555 5544 4333455555555 5555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.33  E-value=1.8e-12  Score=109.37  Aligned_cols=101  Identities=26%  Similarity=0.224  Sum_probs=69.6

Q ss_pred             CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCC---CCccEEeccCCcCCCCCChhhc
Q 027045          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL---TSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..+++|++|++++|+++.. +......+..+++|++|++++|.+++..|..+..+   ++|++|++++|+++. +|. .+
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~-~~  270 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPK-GL  270 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCS-CC
T ss_pred             hcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhh-hh
Confidence            4566666666666666542 21000014567888888888888887777777666   588888888888885 776 44


Q ss_pred             CCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045          200 ANLRYLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                      .  ++|++|++++|++++++.+..+.+|.
T Consensus       271 ~--~~L~~L~Ls~N~l~~~~~~~~l~~L~  297 (310)
T 4glp_A          271 P--AKLRVLDLSSNRLNRAPQPDELPEVD  297 (310)
T ss_dssp             C--SCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred             c--CCCCEEECCCCcCCCCchhhhCCCcc
Confidence            3  78888899888888875555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.32  E-value=9.7e-12  Score=114.54  Aligned_cols=96  Identities=36%  Similarity=0.393  Sum_probs=62.6

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      .+..+++|+.|+|++|+++++ +     .+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++ ++.  +.
T Consensus       104 ~l~~l~~L~~L~Ls~N~l~~l-~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~--l~  172 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LA  172 (605)
T ss_dssp             TSTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CGG--GT
T ss_pred             hhccCCCCCEEEecCCCCCCC-c-----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-chh--hc
Confidence            456667777777777777763 3     466667777777777777643  456667777777777777766 432  66


Q ss_pred             CCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          201 NLRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      .+++|+.|+|++|+|++.+.+..+.+|
T Consensus       173 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L  199 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISDLRALAGLKNL  199 (605)
T ss_dssp             TCTTCCEEECCSSCCCBCGGGTTCTTC
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCC
Confidence            677777777777777666555444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.32  E-value=1.1e-12  Score=121.45  Aligned_cols=101  Identities=10%  Similarity=0.096  Sum_probs=88.2

Q ss_pred             CcccC--CCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCC-CCC-CCcccccCC------CCccEEeccCC
Q 027045          119 MSLFH--PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FND-SILPYLNTL------TSLTTLILSDN  188 (229)
Q Consensus       119 ~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l------~~L~~L~Ls~N  188 (229)
                      +..+.  ++++|++|++++|++.+.+|.    .|..+++|++|++++|. +++ .+|..++.+      ++|++|++++|
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCT----TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChH----HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence            44566  899999999999999999998    99999999999999998 998 899888876      99999999999


Q ss_pred             cCCCCCCh-hhcCCCCCCCEEeccCCcCC-CCCCcccC
Q 027045          189 SIEGSRTK-QGLANLRYLQVLDLSGNFNI-TSGSLTRL  224 (229)
Q Consensus       189 ~l~~~ip~-~~~~~l~~L~~L~L~~N~l~-~~~~~~~l  224 (229)
                      +++. +|. ..++++++|++|++++|+++ .++.+..+
T Consensus       316 ~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l  352 (636)
T 4eco_A          316 NLKT-FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE  352 (636)
T ss_dssp             CCSS-CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred             cCCc-cCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence            9995 885 36999999999999999998 43434333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.32  E-value=4.4e-12  Score=107.84  Aligned_cols=92  Identities=23%  Similarity=0.223  Sum_probs=65.4

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      +..|..+++|++|++++|++++..+.    .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ ++...
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~-~~~~~  283 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIENG----SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK-VGVND  283 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCCTT----GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB-CCTTS
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCChh----HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc-cChhH
Confidence            34566777777777777777776666    6777777777777777777 567777777777777777777776 54434


Q ss_pred             cCC------CCCCCEEeccCCcCC
Q 027045          199 LAN------LRYLQVLDLSGNFNI  216 (229)
Q Consensus       199 ~~~------l~~L~~L~L~~N~l~  216 (229)
                      |..      ..+|+.|++++|++.
T Consensus       284 ~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          284 FCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             SSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             ccccccccccccccceEeecCccc
Confidence            443      356777777777776

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.31  E-value=8.2e-12  Score=106.42  Aligned_cols=98  Identities=29%  Similarity=0.411  Sum_probs=81.9

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~  201 (229)
                      +..+++|++|++++|.+++. +     .+..+++|++|++++|.+++.  +.+..+++|+.|++++|++++..|. .+.+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~  309 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI-N-----AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGG  309 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHT
T ss_pred             hhcCCCCCEEECCCCccCCC-h-----hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-Hhhc
Confidence            77888999999999999884 3     688899999999999999853  4588899999999999999884444 7889


Q ss_pred             CCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045          202 LRYLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       202 l~~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                      +++|++|++++|++++...+..+.+|.
T Consensus       310 l~~L~~L~L~~n~l~~~~~~~~l~~L~  336 (347)
T 4fmz_A          310 LTNLTTLFLSQNHITDIRPLASLSKMD  336 (347)
T ss_dssp             CTTCSEEECCSSSCCCCGGGGGCTTCS
T ss_pred             cccCCEEEccCCccccccChhhhhccc
Confidence            999999999999999886666666553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.29  E-value=3.8e-12  Score=114.27  Aligned_cols=98  Identities=20%  Similarity=0.132  Sum_probs=82.5

Q ss_pred             CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccccc-CCCCccEEeccCCcCCCCCChhhcCC
Q 027045          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN-TLTSLTTLILSDNSIEGSRTKQGLAN  201 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~~~~~  201 (229)
                      ..+++|+.|++++|.+++..|.    .|..+++|++|++++|.+++..|..+. .+++|++|+|++|.+++ +|.  +..
T Consensus       117 ~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~--~~~  189 (487)
T 3oja_A          117 SRGQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG--QVV  189 (487)
T ss_dssp             CCCSSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC--CCC
T ss_pred             cccCCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccc--ccc
Confidence            3468899999999999998887    889999999999999999988888776 78999999999999998 554  457


Q ss_pred             CCCCCEEeccCCcCCCCC-CcccCCCC
Q 027045          202 LRYLQVLDLSGNFNITSG-SLTRLGRL  227 (229)
Q Consensus       202 l~~L~~L~L~~N~l~~~~-~~~~l~~L  227 (229)
                      +++|++|++++|.+++.+ .+..+.+|
T Consensus       190 l~~L~~L~Ls~N~l~~~~~~~~~l~~L  216 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAFMGPEFQSAAGV  216 (487)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred             CCCCCEEECCCCCCCCCCHhHcCCCCc
Confidence            999999999999999873 34444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=1.4e-12  Score=124.51  Aligned_cols=90  Identities=18%  Similarity=0.207  Sum_probs=46.5

Q ss_pred             ccCCCCCCcEEeCCCCc-CCC-ccccccccccCCC-------CCCcEEEcCCCCCCCCCcc--cccCCCCccEEeccCCc
Q 027045          121 LFHPFEELQRLDLPGNW-FTG-IYENRAYDSFGSL-------KQLKMLNLGDNFFNDSILP--YLNTLTSLTTLILSDNS  189 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~~~~~l-------~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~  189 (229)
                      .|.++++|++|++++|+ +++ .+|.    .+..+       ++|++|++++|.++ .+|.  .++.+++|+.|+|++|+
T Consensus       510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~----~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          510 FLYDLPELQSLNIACNRGISAAQLKA----DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             GGGGCSSCCEEECTTCTTSCHHHHHH----HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred             HHhCCCCCCEEECcCCCCcccccchH----HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence            34445555555555554 554 4443    33222       25555555555555 4554  55555555555555555


Q ss_pred             CCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          190 IEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       190 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      ++ .+|  .++++++|++|++++|+++.+
T Consensus       585 l~-~lp--~~~~L~~L~~L~Ls~N~l~~l  610 (876)
T 4ecn_A          585 VR-HLE--AFGTNVKLTDLKLDYNQIEEI  610 (876)
T ss_dssp             CC-BCC--CCCTTSEESEEECCSSCCSCC
T ss_pred             cc-cch--hhcCCCcceEEECcCCccccc
Confidence            55 355  355555555555555555533

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.28  E-value=1.7e-12  Score=109.50  Aligned_cols=121  Identities=18%  Similarity=0.120  Sum_probs=86.9

Q ss_pred             cEEEEecCC-CccccccCCC--CCc---cccCC--------------cccCCCCCCcEEeCCCCcCCCccccccccccCC
Q 027045           93 RVMQLSLNE-TIKFNYSSGS--GSA---LLLNM--------------SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGS  152 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~--~~~---~~l~~--------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  152 (229)
                      ++++|++++ .+.+..|...  ...   ..++.              ..+..+++|++|++++|++++..+.    .|..
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~  167 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE----QVRA  167 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT----SCCC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH----Hhcc
Confidence            378888888 7777666543  111   11110              1223578899999999999887777    8888


Q ss_pred             CCCCcEEEcCCCCCCCC--Cc--ccccCCCCccEEeccCCcCCCCCChh---hcCCCCCCCEEeccCCcCCCC
Q 027045          153 LKQLKMLNLGDNFFNDS--IL--PYLNTLTSLTTLILSDNSIEGSRTKQ---GLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       153 l~~L~~L~Ls~N~l~~~--~p--~~l~~l~~L~~L~Ls~N~l~~~ip~~---~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +++|++|++++|++.+.  ++  ..++.+++|++|++++|+++. ++..   .+.++++|++|++++|.+++.
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence            99999999999987642  22  234678889999999999875 4431   256789999999999999886

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.26  E-value=1.4e-11  Score=104.24  Aligned_cols=85  Identities=24%  Similarity=0.250  Sum_probs=76.0

Q ss_pred             CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  202 (229)
                      ..+++|++|++++|.+++. +     ....+++|++|++++|.+++ +|..+..+++|++|++++|++++ +|. .+..+
T Consensus       166 ~~l~~L~~L~L~~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~-~~~~l  236 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK-ALRFS  236 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT-TCCCC
T ss_pred             hccCcCCEEECCCCcCccc-c-----cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhh-HhhcC
Confidence            4689999999999999986 4     34469999999999999995 55569999999999999999997 887 79999


Q ss_pred             CCCCEEeccCCcCC
Q 027045          203 RYLQVLDLSGNFNI  216 (229)
Q Consensus       203 ~~L~~L~L~~N~l~  216 (229)
                      ++|++|++++|++.
T Consensus       237 ~~L~~L~l~~N~~~  250 (317)
T 3o53_A          237 QNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTCCEEECTTCCCB
T ss_pred             CCCCEEEccCCCcc
Confidence            99999999999998

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.26  E-value=2.8e-11  Score=111.43  Aligned_cols=113  Identities=31%  Similarity=0.304  Sum_probs=95.6

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|+|++ .+.+           +.+  +..+++|+.|+|++|++++ +|     .+..+++|+.|+|++|.+++ +
T Consensus        65 ~~L~~L~Ls~N~l~~-----------~~~--l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~-l  124 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTD-----------IKP--LTNLKNLGWLFLDENKIKD-LS-----SLKDLKKLKSLSLEHNGISD-I  124 (605)
T ss_dssp             TTCCEEECTTSCCCC-----------CGG--GGGCTTCCEEECCSSCCCC-CT-----TSTTCTTCCEEECTTSCCCC-C
T ss_pred             CCCCEEEeeCCCCCC-----------Chh--hccCCCCCEEECcCCCCCC-Ch-----hhccCCCCCEEEecCCCCCC-C
Confidence            4688999998 7766           222  7889999999999999998 34     68999999999999999995 3


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                       +.+..+++|+.|+|++|++++ ++  .+..+++|+.|+|++|.+++...+..+.+|.
T Consensus       125 -~~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~  178 (605)
T 1m9s_A          125 -NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ  178 (605)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCC-CG--GGGSCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred             -ccccCCCccCEEECCCCccCC-ch--hhcccCCCCEEECcCCcCCCchhhccCCCCC
Confidence             458999999999999999998 53  6899999999999999999885566565553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.24  E-value=2.5e-11  Score=103.37  Aligned_cols=88  Identities=27%  Similarity=0.359  Sum_probs=77.7

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..+..+++|++|++++|++++. +     .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++.  +
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~--~  329 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISDI-S-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP--L  329 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CGG--G
T ss_pred             hhHhcCCCcCEEEccCCccCCC-h-----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-ccC--h
Confidence            4578899999999999999985 4     68899999999999999998888899999999999999999998 554  7


Q ss_pred             CCCCCCCEEeccCCcCC
Q 027045          200 ANLRYLQVLDLSGNFNI  216 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~  216 (229)
                      ..+++|++|++++|.++
T Consensus       330 ~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          330 ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGCTTCSEESSSCC---
T ss_pred             hhhhccceeehhhhccc
Confidence            88999999999999986

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.22  E-value=8.5e-11  Score=104.66  Aligned_cols=79  Identities=22%  Similarity=0.177  Sum_probs=47.8

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~  201 (229)
                      +..+++|++|++++|++++.       .++.+++|++|++++|.+++ +|  ++.+++|++|++++|++++ ++   +++
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~  146 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSH  146 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTT
T ss_pred             cccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---ccc
Confidence            45556666666666666653       24556666666666666664 33  5666666666666666665 32   456


Q ss_pred             CCCCCEEeccCCc
Q 027045          202 LRYLQVLDLSGNF  214 (229)
Q Consensus       202 l~~L~~L~L~~N~  214 (229)
                      +++|++|++++|.
T Consensus       147 l~~L~~L~l~~n~  159 (457)
T 3bz5_A          147 NTQLTELDCHLNK  159 (457)
T ss_dssp             CTTCCEEECTTCS
T ss_pred             CCcCCEEECCCCC
Confidence            6666666666663

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.21  E-value=8.7e-11  Score=104.39  Aligned_cols=95  Identities=27%  Similarity=0.324  Sum_probs=58.4

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~  201 (229)
                      +..+++|++|++++|++++. +     .+..+++|++|++++|.+++..|  +..+++|+.|++++|++++ ++  .+.+
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~  351 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDI-S-----PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS--SLAN  351 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCC-G-----GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTT
T ss_pred             ccCCCccCeEEcCCCcccCc-h-----hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-ch--hhcc
Confidence            55566666666666666663 2     34566667777777776665443  5566666677776666666 43  4666


Q ss_pred             CCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          202 LRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       202 l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      +++|++|++++|++++...+..+.+|
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~l~~L  377 (466)
T 1o6v_A          352 LTNINWLSAGHNQISDLTPLANLTRI  377 (466)
T ss_dssp             CTTCCEEECCSSCCCBCGGGTTCTTC
T ss_pred             CCCCCEEeCCCCccCccchhhcCCCC
Confidence            66777777777766665444444433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.21  E-value=5.4e-11  Score=105.73  Aligned_cols=79  Identities=30%  Similarity=0.391  Sum_probs=38.9

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~  201 (229)
                      +..+++|++|++++|++++. +     .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++  .+.+
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~  154 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADI-T-----PLANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS--ALSG  154 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG--GGTT
T ss_pred             hhccccCCEEECCCCccccC-h-----hhcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch--hhcc
Confidence            44455555555555555542 1     244455555555555555532 22 4555555555555555554 33  2455


Q ss_pred             CCCCCEEecc
Q 027045          202 LRYLQVLDLS  211 (229)
Q Consensus       202 l~~L~~L~L~  211 (229)
                      +++|++|+++
T Consensus       155 l~~L~~L~l~  164 (466)
T 1o6v_A          155 LTSLQQLSFG  164 (466)
T ss_dssp             CTTCSEEEEE
T ss_pred             CCcccEeecC
Confidence            5555555553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=5.2e-11  Score=108.86  Aligned_cols=92  Identities=32%  Similarity=0.338  Sum_probs=81.6

Q ss_pred             CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC
Q 027045          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (229)
Q Consensus       127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~  206 (229)
                      .|+.|++++|+|++ +|     .|..+++|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +|  .++++++|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp-----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LC-----HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSS-CC-----CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCC
T ss_pred             CceEEEecCCCCCC-Cc-----CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCc
Confidence            58899999999999 56     5889999999999999999 789999999999999999999998 87  599999999


Q ss_pred             EEeccCCcCCCCC---CcccCCCCC
Q 027045          207 VLDLSGNFNITSG---SLTRLGRLL  228 (229)
Q Consensus       207 ~L~L~~N~l~~~~---~~~~l~~L~  228 (229)
                      +|+|++|++++..   .+..+.+|.
T Consensus       512 ~L~Ls~N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             EEECCCCCCCCCCCcHHHhcCCCCC
Confidence            9999999999873   455555553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.17  E-value=2.7e-11  Score=103.90  Aligned_cols=99  Identities=19%  Similarity=0.316  Sum_probs=69.3

Q ss_pred             CCCCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccc
Q 027045           79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD  148 (229)
Q Consensus        79 C~~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  148 (229)
                      | ++..|.|.+.         ...+++|+|++ ++..           +....|.++++|++|+|++|++.+.+|.   .
T Consensus         9 C-~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-----------i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---~   73 (350)
T 4ay9_X            9 C-SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----------IQKGAFSGFGDLEKIEISQNDVLEVIEA---D   73 (350)
T ss_dssp             E-ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-----------ECTTSSTTCTTCCEEEEECCTTCCEECT---T
T ss_pred             e-eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-----------cCHHHHcCCCCCCEEECcCCCCCCccCh---h
Confidence            5 6788888641         13567777777 6654           5566788888888888888888765553   1


Q ss_pred             ccCCCCCCcE-EEcCCCCCCCCCcccccCCCCccEEeccCCcCCC
Q 027045          149 SFGSLKQLKM-LNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG  192 (229)
Q Consensus       149 ~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  192 (229)
                      .|.+++++++ +.++.|+++...|..|..+++|++|++++|++++
T Consensus        74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             HhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence            5667766654 4556677776666777777777777777777765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.17  E-value=4.8e-11  Score=109.17  Aligned_cols=125  Identities=15%  Similarity=0.130  Sum_probs=82.8

Q ss_pred             CCCCC----CCCCc-eecCCCCcEEEEecCC-CccccccCCCCC-ccccCC--ccc----CCCCCCcEEeCCCCcCCCcc
Q 027045           76 SDCCD----DWEGV-KCNATTRRVMQLSLNE-TIKFNYSSGSGS-ALLLNM--SLF----HPFEELQRLDLPGNWFTGIY  142 (229)
Q Consensus        76 ~~~C~----~w~gv-~C~~~~~~v~~L~L~~-~l~~~~~~~~~~-~~~l~~--~~~----~~l~~L~~L~Ls~N~l~~~~  142 (229)
                      .++|.    .|.|+ .|.  ..+++.|++++ ++.+ +|..... +..++.  ..+    ..+++|++|++++|+|++ +
T Consensus        40 ~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-i  115 (571)
T 3cvr_A           40 ALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-L  115 (571)
T ss_dssp             CCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-C
T ss_pred             CCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-c
Confidence            45562    38888 675  35789999999 8776 6553321 111110  000    335677888888888777 5


Q ss_pred             ccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCC
Q 027045          143 ENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS  220 (229)
Q Consensus       143 p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~  220 (229)
                      |.     +..  +|++|++++|.+++ +|.   .+++|++|++++|++++ +|.    .+++|++|++++|++++++.
T Consensus       116 p~-----l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~lp~  177 (571)
T 3cvr_A          116 PE-----LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTFLPE  177 (571)
T ss_dssp             CC-----CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCCCC
T ss_pred             ch-----hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCCcch
Confidence            52     322  78888888888875 555   56788888888888887 764    46778888888888877654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.12  E-value=5.6e-10  Score=99.35  Aligned_cols=92  Identities=23%  Similarity=0.140  Sum_probs=68.8

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~  201 (229)
                      +..+++|++|++++|++++.       .+..+++|++|++++|.+++ ++  ++.+++|++|++++|+..+.+   .+..
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l-------~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~---~~~~  168 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKL-------DVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL---DVTP  168 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC-------CCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC---CCTT
T ss_pred             cCCCCcCCEEECCCCcCCee-------cCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc---cccc
Confidence            67788888888888888873       36778888888888888886 33  778888888888888655545   3677


Q ss_pred             CCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          202 LRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       202 l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      +++|++|++++|++++.+ +..+.+|
T Consensus       169 l~~L~~L~ls~n~l~~l~-l~~l~~L  193 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITELD-VSQNKLL  193 (457)
T ss_dssp             CTTCCEEECCSSCCCCCC-CTTCTTC
T ss_pred             CCcCCEEECCCCccceec-cccCCCC
Confidence            888888888888888764 4444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.11  E-value=1.9e-13  Score=108.17  Aligned_cols=106  Identities=25%  Similarity=0.270  Sum_probs=80.7

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      ..++.|++++ .+.+           +.  .+.++++|++|++++|+++. +|.    .+..+++|++|++++|.+++ +
T Consensus        48 ~~L~~L~ls~n~l~~-----------l~--~~~~l~~L~~L~l~~n~l~~-l~~----~~~~~~~L~~L~L~~N~l~~-l  108 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-----------IS--SLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-L  108 (198)
T ss_dssp             TTCSEEECSEEEESC-----------CC--CHHHHTTCCEEEEEEEEECS-CSS----HHHHHHHCSEEEEEEEECCC-H
T ss_pred             CCCCEEECCCCCCcc-----------cc--ccccCCCCCEEECCCCCccc-ccc----hhhcCCcCCEEECcCCcCCc-C
Confidence            3577788877 6654           22  56677888888888888886 565    66677888888888888885 4


Q ss_pred             cccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCCcCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      | .+..+++|++|++++|++++ ++. ..+..+++|++|++++|.+++.
T Consensus       109 ~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          109 S-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             H-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             C-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccc
Confidence            4 57788888888888888886 443 3578888899999988887664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=1.7e-10  Score=98.39  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=73.9

Q ss_pred             cEEeCCCC-cCCCccccccccccCCCCCCcEEEcCC-CCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC
Q 027045          129 QRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGD-NFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (229)
Q Consensus       129 ~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~  206 (229)
                      ..++.+++ ++++ +|     .+..+++|++|+|++ |.+++..+..|..+++|++|+|++|+|++ ++...|.++++|+
T Consensus        11 ~~v~~~~~n~l~~-ip-----~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LH-----HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCTT-TT-----TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCC
T ss_pred             CEEEcCCCCCCCc-cC-----CCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCC
Confidence            35688888 8888 66     477889999999996 99998888899999999999999999999 5544899999999


Q ss_pred             EEeccCCcCCCCC
Q 027045          207 VLDLSGNFNITSG  219 (229)
Q Consensus       207 ~L~L~~N~l~~~~  219 (229)
                      +|+|++|+|++.+
T Consensus        84 ~L~l~~N~l~~~~   96 (347)
T 2ifg_A           84 RLNLSFNALESLS   96 (347)
T ss_dssp             EEECCSSCCSCCC
T ss_pred             EEeCCCCccceeC
Confidence            9999999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.09  E-value=9.1e-10  Score=97.92  Aligned_cols=85  Identities=21%  Similarity=0.285  Sum_probs=42.5

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCC---------
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG---------  192 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---------  192 (229)
                      |.++++|++|++++|++++ +|.    .+   ++|++|++++|.+++ +| .++.+++|++|++++|++++         
T Consensus       149 ~~~l~~L~~L~l~~N~l~~-lp~----~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~  218 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKK-LPD----LP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLE  218 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CCC----CC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             cCCCCCCCEEECCCCcCcc-cCC----Cc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCccc
Confidence            5566666666666666665 333    21   244455555554443 33 24444444444444444443         


Q ss_pred             ----------CCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          193 ----------SRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       193 ----------~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                                .+|.  ++.+++|++|++++|++++.
T Consensus       219 ~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l  252 (454)
T 1jl5_A          219 SIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTL  252 (454)
T ss_dssp             EEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSC
T ss_pred             EEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcc
Confidence                      1432  44555555555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.04  E-value=1.8e-09  Score=95.98  Aligned_cols=114  Identities=16%  Similarity=0.147  Sum_probs=83.2

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCC-----cccCCC-CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNM-----SLFHPF-EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN  164 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~-----~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N  164 (229)
                      .+++.|++++ .+.+ +|.....+..++.     ..+..+ ++|++|++++|++++ +|     .|..+++|++|++++|
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-----~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-----ELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSS
T ss_pred             CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-----ccCCCCCCCEEECCCC
Confidence            4567777777 6655 4443222222211     112223 689999999999998 66     5889999999999999


Q ss_pred             CCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045          165 FFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       165 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      ++++ +|..+   .+|++|++++|++++ +|  .++++++|++|++++|.+++.+
T Consensus       164 ~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~  211 (454)
T 1jl5_A          164 SLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLP  211 (454)
T ss_dssp             CCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred             cCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCC
Confidence            9985 66543   589999999999998 77  4888999999999998888754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.04  E-value=4.4e-10  Score=96.36  Aligned_cols=91  Identities=18%  Similarity=0.129  Sum_probs=77.4

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc-ccccCCCCccE-EeccCCcCCCCCChhhcCCCC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTT-LILSDNSIEGSRTKQGLANLR  203 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~Ls~N~l~~~ip~~~~~~l~  203 (229)
                      +++++|+|++|+|+.+.+.    .|.++++|++|+|++|.+.+.+| ..|.++++++. +.++.|++++ ++...|..++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred             CCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence            5799999999999996666    79999999999999999876665 46788988765 6677899998 6555899999


Q ss_pred             CCCEEeccCCcCCCCCCc
Q 027045          204 YLQVLDLSGNFNITSGSL  221 (229)
Q Consensus       204 ~L~~L~L~~N~l~~~~~~  221 (229)
                      +|++|++++|.++..+..
T Consensus       105 ~L~~L~l~~n~l~~~~~~  122 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDV  122 (350)
T ss_dssp             TCCEEEEEEECCSSCCCC
T ss_pred             ccccccccccccccCCch
Confidence            999999999999887543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.02  E-value=1.7e-11  Score=103.90  Aligned_cols=91  Identities=20%  Similarity=0.113  Sum_probs=79.2

Q ss_pred             cCCCCCCcEEeCCCCcCCCc-cccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCC-cCCCC-CChhh
Q 027045          122 FHPFEELQRLDLPGNWFTGI-YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN-SIEGS-RTKQG  198 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-ip~~~  198 (229)
                      +..+++|++|++++|.+++. ++.    .+..+++|++|++++|.+++..|..++.+++|++|++++| .+++. ++. .
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~  163 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-L  163 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-H
T ss_pred             hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-H
Confidence            45689999999999999876 666    7889999999999999999888888999999999999999 67742 554 6


Q ss_pred             cCCCCCCCEEeccCC-cCCC
Q 027045          199 LANLRYLQVLDLSGN-FNIT  217 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N-~l~~  217 (229)
                      +.++++|++|++++| .+++
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCH
T ss_pred             HhcCCCCCEEcCCCCCCcCh
Confidence            888999999999999 8875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.00  E-value=9.5e-11  Score=99.25  Aligned_cols=89  Identities=24%  Similarity=0.263  Sum_probs=76.2

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCC-CCCCC-CcccccCCCCccEEeccCC-cCCCC-CCh
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDS-ILPYLNTLTSLTTLILSDN-SIEGS-RTK  196 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~-ip~  196 (229)
                      .+..+++|++|++++|.+++..+.    .+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.
T Consensus       113 ~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence            467889999999999999987787    8899999999999999 67753 6666888999999999999 88853 454


Q ss_pred             hhcCCCC-CCCEEeccCCc
Q 027045          197 QGLANLR-YLQVLDLSGNF  214 (229)
Q Consensus       197 ~~~~~l~-~L~~L~L~~N~  214 (229)
                       .+..++ +|++|++++|.
T Consensus       189 -~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          189 -AVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             -HHHHSCTTCCEEECCSCG
T ss_pred             -HHHhcccCCCEEEeCCCc
Confidence             688899 99999999994

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.00  E-value=2.6e-12  Score=101.61  Aligned_cols=89  Identities=26%  Similarity=0.346  Sum_probs=75.8

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  200 (229)
                      .+..+++|++|++++|++++ +|     .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +|  .+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-----~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~  112 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-----SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIE  112 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-----CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-----ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccc
Confidence            57788899999999999988 55     5778889999999999998 677777777899999999999988 66  478


Q ss_pred             CCCCCCEEeccCCcCCCCC
Q 027045          201 NLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       201 ~l~~L~~L~L~~N~l~~~~  219 (229)
                      ++++|++|++++|++++.+
T Consensus       113 ~l~~L~~L~l~~N~i~~~~  131 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITNWG  131 (198)
T ss_dssp             HHHHSSEEEESEEECCCHH
T ss_pred             cCCCCCEEECCCCcCCchh
Confidence            8899999999999998764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.97  E-value=1.6e-09  Score=99.05  Aligned_cols=58  Identities=16%  Similarity=0.153  Sum_probs=29.6

Q ss_pred             CCCcEEEcCCCCCCCCCcccccCCCCc-------cEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCC
Q 027045          154 KQLKMLNLGDNFFNDSILPYLNTLTSL-------TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       154 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~  217 (229)
                      ++|++|++++|.|+ .+|. +..  +|       +.|+|++|+|+. +|. .+.++++|++|++++|++++
T Consensus       180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~-~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPE-NILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCG-GGGGSCTTEEEECCSSSCCH
T ss_pred             CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCH-HHhcCCCCCEEEeeCCcCCC
Confidence            44555555555555 3444 332  44       555555555554 554 44445666666666665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.97  E-value=7.4e-11  Score=102.24  Aligned_cols=94  Identities=27%  Similarity=0.268  Sum_probs=72.9

Q ss_pred             ccCCCCCCcEEeCCCCcCC----CccccccccccCCCCCCcEEEcCCCCCCCC----Ccccc--cCCCCccEEeccCCcC
Q 027045          121 LFHPFEELQRLDLPGNWFT----GIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYL--NTLTSLTTLILSDNSI  190 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l--~~l~~L~~L~Ls~N~l  190 (229)
                      .+..+++|++|++++|.++    +.+|.    .+..+++|++|++++|.+++.    +|..+  +.+++|++|+|++|.+
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHH----HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            5667888888888888886    55666    778888889999998888764    45555  3378889999999988


Q ss_pred             CC----CCChhhc-CCCCCCCEEeccCCcCCCCC
Q 027045          191 EG----SRTKQGL-ANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       191 ~~----~ip~~~~-~~l~~L~~L~L~~N~l~~~~  219 (229)
                      ++    .+|. .+ .++++|++|++++|++++.+
T Consensus       287 ~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          287 ELDAVRTLKT-VIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             BHHHHHHHHH-HHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CHHHHHHHHH-HHHhcCCCceEEEccCCcCCcch
Confidence            86    3666 44 66888999999999888764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.95  E-value=2.9e-10  Score=104.96  Aligned_cols=132  Identities=17%  Similarity=0.120  Sum_probs=85.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcee------cCCCCcEEEEecCC-CccccccCCCCC-ccccCC--ccc----CCCCCCc
Q 027045           64 LPSWVGEDDGMSSDCCDDWEGVKC------NATTRRVMQLSLNE-TIKFNYSSGSGS-ALLLNM--SLF----HPFEELQ  129 (229)
Q Consensus        64 ~~~W~~~~~~~~~~~C~~w~gv~C------~~~~~~v~~L~L~~-~l~~~~~~~~~~-~~~l~~--~~~----~~l~~L~  129 (229)
                      ...|..     ..++| .|.|..|      ......++.|++++ ++. .+|..... +..++.  ..+    ..+++|+
T Consensus        12 w~~W~~-----~~~~~-~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~   84 (622)
T 3g06_A           12 WSAWRR-----AAPAE-ESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELR   84 (622)
T ss_dssp             HHHHHH-----TCCGG-GHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCCTTCSEEEECSCCCSCCCCCCTTCC
T ss_pred             HHHHHh-----cCCcc-hhccccccCcccccccCCCCcEEEecCCCcC-ccChhhCCCCcEEEecCCCCCCCCCcCCCCC
Confidence            344655     46788 8865321      11223578888888 666 45543321 111110  001    1456788


Q ss_pred             EEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEe
Q 027045          130 RLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLD  209 (229)
Q Consensus       130 ~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~  209 (229)
                      +|++++|+|++ +|.       .+++|++|++++|.+++ +|.   .+++|+.|++++|++++ +|.    .+++|++|+
T Consensus        85 ~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~----~l~~L~~L~  147 (622)
T 3g06_A           85 TLEVSGNQLTS-LPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV----LPPGLQELS  147 (622)
T ss_dssp             EEEECSCCCSC-CCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEE
T ss_pred             EEEcCCCcCCc-CCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC----CCCCCCEEE
Confidence            88888888876 442       46788888888888884 444   55778888888888887 775    247888999


Q ss_pred             ccCCcCCCCC
Q 027045          210 LSGNFNITSG  219 (229)
Q Consensus       210 L~~N~l~~~~  219 (229)
                      +++|++++.+
T Consensus       148 Ls~N~l~~l~  157 (622)
T 3g06_A          148 VSDNQLASLP  157 (622)
T ss_dssp             CCSSCCSCCC
T ss_pred             CcCCcCCCcC
Confidence            9999888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.94  E-value=1.1e-10  Score=100.44  Aligned_cols=92  Identities=22%  Similarity=0.295  Sum_probs=51.9

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCC-CCCcEEEcCCCCCCCCCcccc----cC-CCCccEEeccCCcCCCC----CC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNFFNDSILPYL----NT-LTSLTTLILSDNSIEGS----RT  195 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l----~~-l~~L~~L~Ls~N~l~~~----ip  195 (229)
                      ++|++|++++|++++..+......+..+ ++|++|++++|.+++..+..+    .. .++|++|++++|++++.    ++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            6677777777776654443000113333 667777777777765544433    22 24677777777777642    22


Q ss_pred             hhhcCCCC-CCCEEeccCCcCCCC
Q 027045          196 KQGLANLR-YLQVLDLSGNFNITS  218 (229)
Q Consensus       196 ~~~~~~l~-~L~~L~L~~N~l~~~  218 (229)
                      . .+..++ +|++|++++|++++.
T Consensus       160 ~-~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          160 Q-ILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             H-HHHTSCTTCCEEECTTSCGGGS
T ss_pred             H-HHhcCCccccEeeecCCCCchh
Confidence            2 234444 677777777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.88  E-value=1.1e-08  Score=94.56  Aligned_cols=79  Identities=23%  Similarity=0.219  Sum_probs=59.1

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  205 (229)
                      ++|++|++++|+|++ +|.       .+++|++|++++|.++ .+|.   .+++|+.|+|++|+++. +|. .+.++++|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp~-------~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~-lp~-~l~~l~~L  286 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTR-LPE-SLIHLSSE  286 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCS-CCG-GGGGSCTT
T ss_pred             CCCCEEEccCCccCc-CCC-------CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCc-CCH-HHhhcccc
Confidence            567777777777776 332       3467888888888887 4555   56788888888888885 786 68888888


Q ss_pred             CEEeccCCcCCCC
Q 027045          206 QVLDLSGNFNITS  218 (229)
Q Consensus       206 ~~L~L~~N~l~~~  218 (229)
                      +.|++++|++++.
T Consensus       287 ~~L~L~~N~l~~~  299 (622)
T 3g06_A          287 TTVNLEGNPLSER  299 (622)
T ss_dssp             CEEECCSCCCCHH
T ss_pred             CEEEecCCCCCCc
Confidence            8888888887754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.85  E-value=5.3e-11  Score=98.84  Aligned_cols=64  Identities=25%  Similarity=0.315  Sum_probs=36.8

Q ss_pred             CCCCCCcEEEcCCCCCCC--CCcccccCCCCccEEeccCCcCCCCCChhhcCCCC--CCCEEeccCCcCCC
Q 027045          151 GSLKQLKMLNLGDNFFND--SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR--YLQVLDLSGNFNIT  217 (229)
Q Consensus       151 ~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~--~L~~L~L~~N~l~~  217 (229)
                      ..+++|+.|+|++|++++  .+|..+..+++|+.|+|++|+|++ +.  .+..+.  +|++|+|++|.+++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER--ELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GG--GGGGGTTSCCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-ch--hhhhcccCCcceEEccCCcCcc
Confidence            345666666666666665  233445566666666666666665 31  233333  66666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.85  E-value=4.6e-10  Score=96.57  Aligned_cols=112  Identities=21%  Similarity=0.233  Sum_probs=87.4

Q ss_pred             CCcEEEEecCC-CccccccCCCCCccccCC----cccCCCC-CCcEEeCCCCcCCCccccccccccCCC-----CCCcEE
Q 027045           91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNM----SLFHPFE-ELQRLDLPGNWFTGIYENRAYDSFGSL-----KQLKML  159 (229)
Q Consensus        91 ~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~l-----~~L~~L  159 (229)
                      ...++.|++++ .+.+           ...    ..|..++ +|++|++++|++++..+.    .+..+     ++|++|
T Consensus        21 ~~~L~~L~Ls~n~l~~-----------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L   85 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYS-----------ISTVELIQAFANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSL   85 (362)
T ss_dssp             CTTCCEEECTTSCGGG-----------SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEE
T ss_pred             CCCceEEEccCCCCCh-----------HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEE
Confidence            34599999999 7765           233    4567788 899999999999987665    55554     899999


Q ss_pred             EcCCCCCCCCCcccc----cCC-CCccEEeccCCcCCCCCChhh----cCC-CCCCCEEeccCCcCCCC
Q 027045          160 NLGDNFFNDSILPYL----NTL-TSLTTLILSDNSIEGSRTKQG----LAN-LRYLQVLDLSGNFNITS  218 (229)
Q Consensus       160 ~Ls~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~ip~~~----~~~-l~~L~~L~L~~N~l~~~  218 (229)
                      ++++|.+++..+..+    ..+ ++|++|++++|++++ .+...    +.. .++|++|++++|.+++.
T Consensus        86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  153 (362)
T 3goz_A           86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIK  153 (362)
T ss_dssp             ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred             ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence            999999997776644    444 899999999999987 43323    334 36999999999999864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.84  E-value=4.7e-10  Score=97.17  Aligned_cols=92  Identities=23%  Similarity=0.244  Sum_probs=69.7

Q ss_pred             ccCCCCCCcEEeCCCCcCC--C---ccccccccccCCCCCCcEEEcCCCCCC----CCCcccccCCCCccEEeccCCcCC
Q 027045          121 LFHPFEELQRLDLPGNWFT--G---IYENRAYDSFGSLKQLKMLNLGDNFFN----DSILPYLNTLTSLTTLILSDNSIE  191 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~  191 (229)
                      .+..+++|++|++++|+++  |   ..|.    .+..+++|++|++++|.++    ..+|..+..+++|++|+|++|+++
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHH----HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence            3446778888888888887  3   3444    6777888888888888885    467777888888888888888887


Q ss_pred             CC----CChhhc--CCCCCCCEEeccCCcCCC
Q 027045          192 GS----RTKQGL--ANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       192 ~~----ip~~~~--~~l~~L~~L~L~~N~l~~  217 (229)
                      +.    ++. .+  +++++|++|++++|.+++
T Consensus       258 ~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          258 ARGAAAVVD-AFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHHHHH-HHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhhHHHHHH-HHhhccCCCeEEEECcCCcCCH
Confidence            63    343 45  348888899998888877

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=4e-08  Score=83.29  Aligned_cols=96  Identities=20%  Similarity=0.123  Sum_probs=60.7

Q ss_pred             CCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCcc-EEeccCCcCCCCCChhhcCCCC
Q 027045          125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT-TLILSDNSIEGSRTKQGLANLR  203 (229)
Q Consensus       125 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~ip~~~~~~l~  203 (229)
                      +++|+.+++++|+++.+.+.    .|.++++|+.+++.+| ++...+..|.++.+|+ .+++.+ .++. ++...|.+++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCD  297 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCT
T ss_pred             cCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCc
Confidence            56677777777777665555    6667777777777766 5544455666777776 777766 5554 5544667777


Q ss_pred             CCCEEeccCCcCCCCC--CcccCCCC
Q 027045          204 YLQVLDLSGNFNITSG--SLTRLGRL  227 (229)
Q Consensus       204 ~L~~L~L~~N~l~~~~--~~~~l~~L  227 (229)
                      +|+.+++.+|.++.++  .|....+|
T Consensus       298 ~L~~l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          298 NLRYVLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             TEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred             cCCEEEeCCCccCccchhhhcCCcch
Confidence            7777777666666653  34444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=3.8e-08  Score=83.41  Aligned_cols=88  Identities=15%  Similarity=0.108  Sum_probs=76.6

Q ss_pred             ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCc-EEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCC
Q 027045          116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLK-MLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSR  194 (229)
Q Consensus       116 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  194 (229)
                      .+....|.++++|+.|++++| ++.+.+.    .|.++++|+ .+++.+ .++...+..|.++++|+.++++.|+++. +
T Consensus       240 ~I~~~aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I  312 (329)
T 3sb4_A          240 TIPDFTFAQKKYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT-L  312 (329)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE-E
T ss_pred             eecHhhhhCCCCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc-c
Confidence            366778999999999999998 8876666    899999999 999998 7775667899999999999999999987 7


Q ss_pred             ChhhcCCCCCCCEEec
Q 027045          195 TKQGLANLRYLQVLDL  210 (229)
Q Consensus       195 p~~~~~~l~~L~~L~L  210 (229)
                      +...|.++++|+.++.
T Consensus       313 ~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          313 GDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTTTTCTTCCCCEEEC
T ss_pred             chhhhcCCcchhhhcc
Confidence            7778999999999874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.66  E-value=1.7e-08  Score=83.70  Aligned_cols=81  Identities=25%  Similarity=0.272  Sum_probs=65.3

Q ss_pred             CCCCCCcEEeCCCCcCCCc--cccccccccCCCCCCcEEEcCCCCCCCCCcccccCCC--CccEEeccCCcCCCCCCh--
Q 027045          123 HPFEELQRLDLPGNWFTGI--YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLT--SLTTLILSDNSIEGSRTK--  196 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~ip~--  196 (229)
                      .++++|+.|+|++|+|+++  +|.    .+..+++|+.|+|++|.+++.  ..+..+.  +|++|+|++|.+.+.+|.  
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~  240 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQS  240 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcch
Confidence            3578999999999999994  345    667899999999999999964  3344444  999999999999876652  


Q ss_pred             ----hhcCCCCCCCEEe
Q 027045          197 ----QGLANLRYLQVLD  209 (229)
Q Consensus       197 ----~~~~~l~~L~~L~  209 (229)
                          ..+..+++|+.||
T Consensus       241 ~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          241 TYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHCTTCCEES
T ss_pred             hHHHHHHHHCcccCeEC
Confidence                1367899999886

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.65  E-value=1e-09  Score=96.71  Aligned_cols=88  Identities=24%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             CCCcEEeCCCCcCCCc----cccccccccCCCCCCcEEEcCCCCCCCCCcccccC-----CCCccEEeccCCcCCC----
Q 027045          126 EELQRLDLPGNWFTGI----YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT-----LTSLTTLILSDNSIEG----  192 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----  192 (229)
                      ++|++|++++|.+++.    ++.    .+..+++|++|++++|.+++..+..+..     .++|++|++++|++++    
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  388 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSS----VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS  388 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHH----HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHH----HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHH
Confidence            5778888888877764    233    5666788888888888887554444432     5788999999998884    


Q ss_pred             CCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          193 SRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       193 ~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      .+|. .+..+++|++|++++|++++.
T Consensus       389 ~l~~-~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          389 SLAA-TLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHH-HHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHH-HHHhCCCccEEECCCCCCCHH
Confidence            4665 677888999999999988764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.59  E-value=2.4e-09  Score=94.32  Aligned_cols=94  Identities=21%  Similarity=0.189  Sum_probs=64.7

Q ss_pred             ccCCCCCCcEEeCCCCcCCCcccccccccc-CCCC----CCcEEEcCCCCCCC----CCcccccCCCCccEEeccCCcCC
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSF-GSLK----QLKMLNLGDNFFND----SILPYLNTLTSLTTLILSDNSIE  191 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~----~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~  191 (229)
                      .+..+++|++|++++|.++...+.    .+ ..++    +|++|++++|.++.    .++..+..+++|++|++++|.++
T Consensus        51 ~l~~~~~L~~L~Ls~n~l~~~~~~----~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           51 ALRVNPALAELNLRSNELGDVGVH----CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             HHHTCTTCCEEECTTCCCHHHHHH----HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHHhCCCcCEEeCCCCcCChHHHH----HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence            456678888888888888764332    22 2344    68888888888874    45777888888888888888876


Q ss_pred             CCCCh----hhcCCCCCCCEEeccCCcCCCC
Q 027045          192 GSRTK----QGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       192 ~~ip~----~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +..+.    ......++|++|++++|.+++.
T Consensus       127 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  157 (461)
T 1z7x_W          127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  157 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             hHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence            42222    0122356788888888887763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.56  E-value=1e-08  Score=88.96  Aligned_cols=94  Identities=16%  Similarity=0.093  Sum_probs=62.8

Q ss_pred             CCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCC----CC
Q 027045          124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGS----RT  195 (229)
Q Consensus       124 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip  195 (229)
                      ..+.|++|+|++|.|+..........+..+++|++|+|++|.+++.    ++..+...++|+.|+|++|.++..    +.
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            4567888888888876522110001446677888888888888642    244566677888888888888741    22


Q ss_pred             hhhcCCCCCCCEEeccCCcCCCC
Q 027045          196 KQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       196 ~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      . .+...++|++|+|++|.|+..
T Consensus       233 ~-~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          233 R-AAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             H-HHHHCSSCCEEECTTSSCCHH
T ss_pred             H-HHHhCCCCCEEeccCCCCCHH
Confidence            2 344568888888888887654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.49  E-value=1e-08  Score=88.90  Aligned_cols=116  Identities=20%  Similarity=0.130  Sum_probs=80.9

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccccc-CCCCCCcEEEcCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF-GSLKQLKMLNLGDNFFNDS  169 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~  169 (229)
                      ..++.|+|++ .+....          .......+++|++|+|++|.++..........+ ...++|++|+|++|.++..
T Consensus       101 ~~L~~L~Ls~n~l~~~~----------~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~  170 (372)
T 3un9_A          101 HALDEVNLASCQLDPAG----------LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA  170 (372)
T ss_dssp             SCEEEEECTTCCCCHHH----------HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH
T ss_pred             CCceEEEecCCCCCHHH----------HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH
Confidence            4788888888 664310          011123356789999999999865333000012 3568899999999998742


Q ss_pred             ----CcccccCCCCccEEeccCCcCCCC----CChhhcCCCCCCCEEeccCCcCCCC
Q 027045          170 ----ILPYLNTLTSLTTLILSDNSIEGS----RTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       170 ----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                          ++..+...++|++|+|++|.++..    ++. .+...++|++|+|++|.|+..
T Consensus       171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHH
T ss_pred             HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHH
Confidence                344457789999999999998751    233 567788999999999999764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.19  E-value=1.2e-07  Score=86.02  Aligned_cols=91  Identities=14%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             CCCCCcEEeCCCC--cCCCccccccccccC-CCCCCcEEEcCCCCCCC-CCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          124 PFEELQRLDLPGN--WFTGIYENRAYDSFG-SLKQLKMLNLGDNFFND-SILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       124 ~l~~L~~L~Ls~N--~l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ++++|++|+++.+  .+++....    .+. .+++|++|++++|.+++ .++..+..+++|++|++++|.+++......+
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  509 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLS----YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV  509 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHH----HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred             hCCCCCEEEEecCCCCccHHHHH----HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence            3556666666532  24443322    332 47889999999998875 3445567889999999999998753222245


Q ss_pred             CCCCCCCEEeccCCcCCCC
Q 027045          200 ANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~  218 (229)
                      ..+++|++|++++|+++..
T Consensus       510 ~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          510 TKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHCSSCCEEEEESCBCCTT
T ss_pred             HhcCccCeeECcCCcCCHH
Confidence            6789999999999998875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.17  E-value=4.8e-07  Score=70.58  Aligned_cols=120  Identities=14%  Similarity=0.082  Sum_probs=78.0

Q ss_pred             CCcEEEEecCCC-ccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC
Q 027045           91 TRRVMQLSLNET-IKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS  169 (229)
Q Consensus        91 ~~~v~~L~L~~~-l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~  169 (229)
                      ...++.|+|+++ -.+.  .+   . ..-...+...++|++|+|++|.|...-.......+...+.|++|+|++|.++..
T Consensus        35 ~~~L~~L~L~~n~~i~~--~g---~-~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPV--PT---L-KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             CTTCCEEECTTCTTCCH--HH---H-HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             CCCCCEEEecCCCCCCH--HH---H-HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            456888888773 3220  00   0 000123556788999999999987532110001455567899999999998743


Q ss_pred             ----CcccccCCCCccEEec--cCCcCCCC----CChhhcCCCCCCCEEeccCCcCCC
Q 027045          170 ----ILPYLNTLTSLTTLIL--SDNSIEGS----RTKQGLANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       170 ----~p~~l~~l~~L~~L~L--s~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~  217 (229)
                          +...+...++|++|+|  ++|.++..    +.. .+...++|++|++++|.+..
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCCh
Confidence                3455677788999999  88988752    222 45566889999999998753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.10  E-value=4e-07  Score=71.08  Aligned_cols=97  Identities=15%  Similarity=0.108  Sum_probs=71.2

Q ss_pred             ccCCCCCCcEEeCCCC-cCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCC--
Q 027045          121 LFHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGS--  193 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~--  193 (229)
                      .+...+.|++|+|++| .+...--......+...++|++|+|++|.++..    +...+...++|++|+|++|.|+..  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4567889999999999 887531110111567788999999999998742    233455668899999999999852  


Q ss_pred             --CChhhcCCCCCCCEEec--cCCcCCCC
Q 027045          194 --RTKQGLANLRYLQVLDL--SGNFNITS  218 (229)
Q Consensus       194 --ip~~~~~~l~~L~~L~L--~~N~l~~~  218 (229)
                        +.. .+...++|++|++  ++|.+...
T Consensus       111 ~~l~~-~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          111 LALVE-ALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHHH-GGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHH-HHHhCCCceEEEecCCCCCCCHH
Confidence              233 5677789999999  88988764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.08  E-value=1.1e-05  Score=70.53  Aligned_cols=95  Identities=14%  Similarity=0.087  Sum_probs=75.8

Q ss_pred             ccCCcccCCCCCCcEEeCCCCcCC-----CccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcC
Q 027045          116 LLNMSLFHPFEELQRLDLPGNWFT-----GIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSI  190 (229)
Q Consensus       116 ~l~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  190 (229)
                      .+....|.++++|+.+++.+|.+.     .+.+.    .|.++++|+.+++.+ .++......|.++.+|+.+++..| +
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l  334 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY----CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V  334 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT----TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHH----HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence            355678899999999999988776     34445    789999999999984 476555678889999999999655 6


Q ss_pred             CCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          191 EGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       191 ~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +. +....|.++ +|+.+++.+|.+...
T Consensus       335 ~~-I~~~aF~~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          335 TQ-INFSAFNNT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             CE-ECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred             cE-EcHHhCCCC-CCCEEEEcCCCCccc
Confidence            65 666688898 999999999987665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.95  E-value=1.5e-06  Score=78.76  Aligned_cols=83  Identities=13%  Similarity=0.046  Sum_probs=60.2

Q ss_pred             CCCCCcEEeCCCCcCCCc----cccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCCCC
Q 027045          124 PFEELQRLDLPGNWFTGI----YENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGSRT  195 (229)
Q Consensus       124 ~l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip  195 (229)
                      .+++|++|++++|.+++.    ++.    .+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+ +|
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~  236 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHE----LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV  236 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHH----HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH
T ss_pred             hCCCCCEEECccccccCcchhHHHH----HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH
Confidence            578888888888887664    222    345678888888888888732    33345577888888888888876 66


Q ss_pred             hhhcCCCCCCCEEeccC
Q 027045          196 KQGLANLRYLQVLDLSG  212 (229)
Q Consensus       196 ~~~~~~l~~L~~L~L~~  212 (229)
                      . .+.++++|++|+++.
T Consensus       237 ~-~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          237 G-FFKAAANLEEFCGGS  252 (592)
T ss_dssp             H-HHHHCTTCCEEEECB
T ss_pred             H-HHhhhhHHHhhcccc
Confidence            5 677777777777764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.94  E-value=4.8e-07  Score=81.96  Aligned_cols=63  Identities=17%  Similarity=0.092  Sum_probs=33.5

Q ss_pred             CCCCcEEEcCCCCCCCCCcccc-cCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcC
Q 027045          153 LKQLKMLNLGDNFFNDSILPYL-NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN  215 (229)
Q Consensus       153 l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l  215 (229)
                      +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++......+..+++|++|++++|++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            5556666666666554333333 44566666666666664322211233456666666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.90  E-value=7.9e-05  Score=65.01  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=19.2

Q ss_pred             ccCCcccCCCCCCcEEeCCCCcCCCc
Q 027045          116 LLNMSLFHPFEELQRLDLPGNWFTGI  141 (229)
Q Consensus       116 ~l~~~~~~~l~~L~~L~Ls~N~l~~~  141 (229)
                      .+....|.++++|+.+++++|+++.+
T Consensus       170 ~I~~~aF~~c~~L~~l~l~~n~l~~I  195 (401)
T 4fdw_A          170 QLKEDIFYYCYNLKKADLSKTKITKL  195 (401)
T ss_dssp             EECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred             EehHHHhhCcccCCeeecCCCcceEe
Confidence            35556788888888888888776653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.74  E-value=8.1e-06  Score=63.31  Aligned_cols=83  Identities=19%  Similarity=0.223  Sum_probs=46.8

Q ss_pred             CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCC-CCCCCcccccCC----CCccEEeccCCc-CCCCCChhhcC
Q 027045          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLNTL----TSLTTLILSDNS-IEGSRTKQGLA  200 (229)
Q Consensus       127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~ip~~~~~  200 (229)
                      .|++||++++.++..--.    .+..+++|++|+|+++. +++.--..+..+    ++|++|+|+++. ++..--. .+.
T Consensus        62 ~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALH  136 (176)
T ss_dssp             CEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGG
T ss_pred             eEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHh
Confidence            567777777665543222    56667777777777764 553322334443    357777777653 5531111 355


Q ss_pred             CCCCCCEEeccCCc
Q 027045          201 NLRYLQVLDLSGNF  214 (229)
Q Consensus       201 ~l~~L~~L~L~~N~  214 (229)
                      ++++|++|++++..
T Consensus       137 ~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 HFRNLKYLFLSDLP  150 (176)
T ss_dssp             GCTTCCEEEEESCT
T ss_pred             cCCCCCEEECCCCC
Confidence            66777777776653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.73  E-value=3.9e-06  Score=75.95  Aligned_cols=104  Identities=20%  Similarity=0.205  Sum_probs=49.6

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccC-CCCCCcEEeCCCC-cCCCc-cccccccccCCCCCCcEEEcCCCCCCC
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFH-PFEELQRLDLPGN-WFTGI-YENRAYDSFGSLKQLKMLNLGDNFFND  168 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~~  168 (229)
                      +++.|++++ .+.+..+           ..+. .+++|++|++++| .++.. ++.    .+..+++|++|++++|.+++
T Consensus       106 ~L~~L~L~~~~~~~~~~-----------~~l~~~~~~L~~L~L~~~~~~~~~~l~~----~~~~~~~L~~L~L~~~~i~~  170 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCL-----------ELIAKSFKNFKVLVLSSCEGFSTDGLAA----IAATCRNLKELDLRESDVDD  170 (594)
T ss_dssp             TCCEEEEESCBCCHHHH-----------HHHHHHCTTCCEEEEESCEEEEHHHHHH----HHHHCTTCCEEECTTCEEEC
T ss_pred             CCCeEEeeCcEEcHHHH-----------HHHHHhCCCCcEEeCCCcCCCCHHHHHH----HHHhCCCCCEEeCcCCccCC
Confidence            567777777 5544111           1121 3456666666655 33321 122    22345666666666666554


Q ss_pred             CCccccc----CCCCccEEeccCCcCCCCCChh----hcCCCCCCCEEeccCC
Q 027045          169 SILPYLN----TLTSLTTLILSDNSIEGSRTKQ----GLANLRYLQVLDLSGN  213 (229)
Q Consensus       169 ~~p~~l~----~l~~L~~L~Ls~N~l~~~ip~~----~~~~l~~L~~L~L~~N  213 (229)
                      ..+..+.    .+++|++|++++|. . .+...    .+.++++|++|++++|
T Consensus       171 ~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          171 VSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEecCCC
Confidence            3333222    44566666666554 1 12111    1233456666666555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.62  E-value=9.4e-05  Score=54.31  Aligned_cols=56  Identities=21%  Similarity=0.145  Sum_probs=39.2

Q ss_pred             cEEeCCCCcCC--CccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCC
Q 027045          129 QRLDLPGNWFT--GIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIE  191 (229)
Q Consensus       129 ~~L~Ls~N~l~--~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  191 (229)
                      ..++.+++.++  . +|.    .+  .++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~-vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWAS-LPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTT-SCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCcccc-CCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46777888877  4 554    32  245778888888887555566777778888888888775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.45  E-value=0.00073  Score=58.29  Aligned_cols=90  Identities=14%  Similarity=0.259  Sum_probs=67.9

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      +....|.+++.|+.+.+. +.++.+...    .|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++. +..
T Consensus       279 I~~~aF~~c~~L~~i~l~-~~i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~-I~~  350 (394)
T 4gt6_A          279 IGTGAFMNCPALQDIEFS-SRITELPES----VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK-IPE  350 (394)
T ss_dssp             ECTTTTTTCTTCCEEECC-TTCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB-CCG
T ss_pred             ecCcccccccccccccCC-CcccccCce----eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE-EhH
Confidence            445567778888888885 456664455    7888999999999765 55344567889999999999654 665 766


Q ss_pred             hhcCCCCCCCEEeccCCc
Q 027045          197 QGLANLRYLQVLDLSGNF  214 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N~  214 (229)
                      ..|.++.+|+.+++.+|.
T Consensus       351 ~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          351 SAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             GGGTTCTTCCEEEESSCH
T ss_pred             hHhhCCCCCCEEEECCce
Confidence            689999999999988764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.40  E-value=3.7e-05  Score=59.58  Aligned_cols=86  Identities=13%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCc-CCCccccccccccCCC----CCCcEEEcCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW-FTGIYENRAYDSFGSL----KQLKMLNLGDNF  165 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l----~~L~~L~Ls~N~  165 (229)
                      -++++||+++ .+..           .....+.++++|++|+|+++. |+..--.    .+..+    ++|++|+++++.
T Consensus        61 ~~L~~LDLs~~~Itd-----------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~----~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           61 YKIQAIDATDSCIMS-----------IGFDHMEGLQYVEKIRLCKCHYIEDGCLE----RLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CCEEEEEEESCCCCG-----------GGGGGGTTCSCCCEEEEESCTTCCHHHHH----HHHTCHHHHHHCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccH-----------HHHHHhcCCCCCCEEEeCCCCccCHHHHH----HHHhcccccCCCCEEEcCCCC
Confidence            4699999999 7654           223446789999999999985 7653222    55554    479999999985


Q ss_pred             -CCCCCcccccCCCCccEEeccCCc-CCC
Q 027045          166 -FNDSILPYLNTLTSLTTLILSDNS-IEG  192 (229)
Q Consensus       166 -l~~~~p~~l~~l~~L~~L~Ls~N~-l~~  192 (229)
                       ++..--..+..+++|++|++++.. ++.
T Consensus       126 ~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          126 NVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             cCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence             875545567889999999999875 553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.32  E-value=0.00059  Score=58.33  Aligned_cols=90  Identities=9%  Similarity=0.098  Sum_probs=62.4

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      +....|.+...|+.+.+..+ ++.+...    .|.++.+|+.+.+.++.++..-...|.++.+|+.+.|..+ ++. |..
T Consensus       254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~----aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~  326 (379)
T 4h09_A          254 IGSFLLQNCTALKTLNFYAK-VKTVPYL----LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQV  326 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCC-CSEECTT----TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECT
T ss_pred             eCccccceeehhcccccccc-ceecccc----ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHH
Confidence            44456677777777777543 4443344    6778888888888887777555567888888888888654 554 655


Q ss_pred             hhcCCCCCCCEEeccCC
Q 027045          197 QGLANLRYLQVLDLSGN  213 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N  213 (229)
                      ..|.++.+|+.+.+..+
T Consensus       327 ~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          327 YAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTTCTTCCCCCCCTT
T ss_pred             HHhhCCCCCCEEEECCc
Confidence            57888888888777543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.30  E-value=0.00054  Score=50.17  Aligned_cols=38  Identities=26%  Similarity=0.362  Sum_probs=33.2

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN  167 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~  167 (229)
                      ++|++|+|++|+|+.+.+.    .|..+++|++|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPG----LLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChh----hhhhccccCEEEecCCCee
Confidence            4689999999999997776    7888999999999999875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.29  E-value=3.2e-05  Score=66.63  Aligned_cols=65  Identities=15%  Similarity=0.258  Sum_probs=40.1

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccc---cCCCCccEEeccCCcCCCC----CChhhcCCCCCCCEEeccCCcCCC
Q 027045          152 SLKQLKMLNLGDNFFNDSILPYL---NTLTSLTTLILSDNSIEGS----RTKQGLANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       152 ~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~  217 (229)
                      .+++|++|++.+|.+++..+..+   ..+++|++|+|+.|.+++.    ++. .+.++++|+.|++++|.++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEECCSBBCCH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEECCCCcCCH
Confidence            46777777777777654333222   2456777888877777642    121 23456777888887777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.12  E-value=0.001  Score=57.41  Aligned_cols=86  Identities=16%  Similarity=0.125  Sum_probs=63.3

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..|....+|+.+.+.++ ++.+-..    .|.++.+|+.+++.++ ++..-...|.++.+|+.+++..| ++. +....|
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF  362 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK-IGANAF  362 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTB
T ss_pred             ccccccccccccccccc-cceechh----hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE-ehHHHh
Confidence            45667777888887654 5554445    7888888998888754 55444567888889999988766 655 666678


Q ss_pred             CCCCCCCEEeccCC
Q 027045          200 ANLRYLQVLDLSGN  213 (229)
Q Consensus       200 ~~l~~L~~L~L~~N  213 (229)
                      .++.+|+.+++..+
T Consensus       363 ~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          363 QGCINLKKVELPKR  376 (394)
T ss_dssp             TTCTTCCEEEEEGG
T ss_pred             hCCCCCCEEEECCC
Confidence            88899998888654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.06  E-value=0.0031  Score=53.76  Aligned_cols=94  Identities=19%  Similarity=0.198  Sum_probs=73.3

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      +....|.....|+.+.+..+ ++.+-..    .|.++..|+.+.+..+ ++......|.++.+|+.+.+.++.++. ++.
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~----aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~  303 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VTSIGSF----LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEP  303 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CCEECTT----TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECT
T ss_pred             EccccccCCccceEEEcCCC-ccEeCcc----ccceeehhcccccccc-ceeccccccccccccccccccccccce-ehh
Confidence            44556778889999998766 6665555    7888999999999765 443445678899999999999988886 777


Q ss_pred             hhcCCCCCCCEEeccCCcCCCC
Q 027045          197 QGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      ..|.++.+|+.+.+..+ ++.+
T Consensus       304 ~aF~~c~~L~~i~lp~~-l~~I  324 (379)
T 4h09_A          304 RVFMDCVKLSSVTLPTA-LKTI  324 (379)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEE
T ss_pred             hhhcCCCCCCEEEcCcc-ccEE
Confidence            78999999999999754 4444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.98  E-value=0.0015  Score=56.25  Aligned_cols=90  Identities=19%  Similarity=0.227  Sum_probs=63.6

Q ss_pred             ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCC
Q 027045          116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRT  195 (229)
Q Consensus       116 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  195 (229)
                      .+....|.++.+|+.++|..+ ++.+-..    .|.++.+|+.+.+..+ ++..-...|.++.+|+.+++.+|....   
T Consensus       301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---  371 (394)
T 4gt6_A          301 ELPESVFAGCISLKSIDIPEG-ITQILDD----AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---  371 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---
T ss_pred             ccCceeecCCCCcCEEEeCCc-ccEehHh----HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---
Confidence            456678999999999999865 6665556    8999999999999765 664456789999999999999876532   


Q ss_pred             hhhcCCCCCCCEEeccCCcC
Q 027045          196 KQGLANLRYLQVLDLSGNFN  215 (229)
Q Consensus       196 ~~~~~~l~~L~~L~L~~N~l  215 (229)
                      . .+..+.+|+.+.+..|.+
T Consensus       372 ~-~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          372 N-AISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             H-TCBCCCCC----------
T ss_pred             h-hhhccCCCCEEEeCCCCE
Confidence            2 567788899888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.75  E-value=0.0022  Score=55.27  Aligned_cols=84  Identities=15%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCC
Q 027045          116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRT  195 (229)
Q Consensus       116 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  195 (229)
                      .+....|.++++|+.+++.++ ++.+-..    .|.++.+|+.+++..| ++..-...|.++.+|+.+++..+ ++. +.
T Consensus       310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~  381 (394)
T 4fs7_A          310 FIGEEAFESCTSLVSIDLPYL-VEEIGKR----SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YR  381 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GG
T ss_pred             eechhhhcCCCCCCEEEeCCc-ccEEhHH----hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hh
Confidence            455678999999999999754 7775566    8999999999999877 66455678999999999999765 333 44


Q ss_pred             hhhcCCCCCCCEE
Q 027045          196 KQGLANLRYLQVL  208 (229)
Q Consensus       196 ~~~~~~l~~L~~L  208 (229)
                      . .|.++++|+.+
T Consensus       382 ~-~F~~c~~L~~I  393 (394)
T 4fs7_A          382 Y-DFEDTTKFKWI  393 (394)
T ss_dssp             G-GBCTTCEEEEE
T ss_pred             h-eecCCCCCcEE
Confidence            3 68888888764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.59  E-value=0.00024  Score=61.16  Aligned_cols=87  Identities=17%  Similarity=0.244  Sum_probs=60.0

Q ss_pred             CCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       124 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      .+++|++|++.+|.+....+. +......+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-. .+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l  327 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-EL  327 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HH
T ss_pred             CCCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HH
Confidence            478999999999888754332 111223578999999999999863    333445679999999999998752211 23


Q ss_pred             CC-CCCCCEEeccCCc
Q 027045          200 AN-LRYLQVLDLSGNF  214 (229)
Q Consensus       200 ~~-l~~L~~L~L~~N~  214 (229)
                      .. +  ...++++.|.
T Consensus       328 ~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          328 QKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHC--CSEEECCSBC
T ss_pred             HHHc--CCEEEecCCc
Confidence            22 2  3668898886

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.58  E-value=0.00084  Score=52.82  Aligned_cols=92  Identities=11%  Similarity=0.126  Sum_probs=44.3

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCc---CCCC-
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNS---IEGS-  193 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~---l~~~-  193 (229)
                      +..-+.|+.|+|++|+|...--......+..-+.|++|+|++|.|+..    +-+.+..-..|++|+|++|.   +... 
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            344556666677666665422110000233345666667776666532    11233444556666666442   2210 


Q ss_pred             ---CChhhcCCCCCCCEEeccCCc
Q 027045          194 ---RTKQGLANLRYLQVLDLSGNF  214 (229)
Q Consensus       194 ---ip~~~~~~l~~L~~L~L~~N~  214 (229)
                         +.. .+..-+.|+.|+++.|.
T Consensus       146 ~~~ia~-aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          146 EMDMMM-AIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHH-HHHHCSSCCEEECCCCC
T ss_pred             HHHHHH-HHHhCCCcCeEeccCCC
Confidence               111 23444566666666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.35  E-value=0.0035  Score=49.22  Aligned_cols=92  Identities=11%  Similarity=0.091  Sum_probs=63.7

Q ss_pred             cCCCCCCcEEeCCCC-cCCCccccccccccCCCCCCcEEEcCCCCCCCCC----cccccCCCCccEEeccCCcCCCC---
Q 027045          122 FHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI----LPYLNTLTSLTTLILSDNSIEGS---  193 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~---  193 (229)
                      +.+-+.|++|+|++| +|...--......+..-+.|+.|+|++|.+...-    ...+..-+.|++|+|++|.|...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            455678999999986 7764211101115667789999999999997432    23344568899999999999852   


Q ss_pred             -CChhhcCCCCCCCEEeccCCc
Q 027045          194 -RTKQGLANLRYLQVLDLSGNF  214 (229)
Q Consensus       194 -ip~~~~~~l~~L~~L~L~~N~  214 (229)
                       +-. .+..-..|++|+|++|.
T Consensus       117 ala~-aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          117 RLLR-STLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHHH-HTTTTCCCSEEECCCCS
T ss_pred             HHHH-HHhhCCceeEEECCCCc
Confidence             222 35556789999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 8e-09
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
           ++S     + L  L L  N  + I          SL +L+ L   +N    S +  L  L
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDI------SPVSSLTKLQRLFFANNKV--SDVSSLANL 350

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
           T++  L    N I        LANL  +  L L+  
Sbjct: 351 TNINWLSAGHNQISDL---TPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 5e-07
 Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 115 LLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL 174
           L L  +       L  L    N      +        +LK L  L L  N  +D  +  +
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPV 325

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGRL 227
           ++LT L  L  ++N +        LANL  +  L    N  I+      +LTR+ +L
Sbjct: 326 SSLTKLQRLFFANNKVSDV---SSLANLTNINWLSAGHN-QISDLTPLANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
           +L +     LG     D++      L  +TTL      I+   +  G+  L  L  ++ S
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 74

Query: 212 GNFNITSGSLTRLGRL 227
            N       L  L +L
Sbjct: 75  NNQLTDITPLKNLTKL 90

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 31/173 (17%)

Query: 74  MSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDL 133
           +++    +   +  N  +   +   L        ++      + +++       L  L L
Sbjct: 171 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ----ISDITPLGILTNLDELSL 226

Query: 134 PGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS 193
            GN    I       +  SL  L  L+L +N  ++  L  L+ LT LT L L  N I   
Sbjct: 227 NGNQLKDI------GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNI 278

Query: 194 RTKQGLAN-------------------LRYLQVLDLSGNFNITSGSLTRLGRL 227
               GL                     L+ L  L L  N       ++ L +L
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 331

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.4 bits (116), Expect = 9e-08
 Identities = 33/155 (21%), Positives = 49/155 (31%), Gaps = 48/155 (30%)

Query: 36  CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDD-WEGVKCNATTRRV 94
           C   ++ ALL+IK           +   L SW+      ++DCC+  W GV C+  T+  
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLP-----TTDCCNRTWLGVLCDTDTQTY 50

Query: 95  MQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK 154
                                            +  LDL G      Y      S  +L 
Sbjct: 51  --------------------------------RVNNLDLSGLNLPKPYPIP--SSLANLP 76

Query: 155 QLKMLNLGDN-FFNDSILPYLNTLTSLTTLILSDN 188
            L  L +G        I P +  LT L  L ++  
Sbjct: 77  YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 160 NLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG 219
           +L +N    ++   L  L  L +L +S N++ G   +    NL+   V   + N  +   
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGS 307

Query: 220 SL 221
            L
Sbjct: 308 PL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 5/57 (8%)

Query: 132 DLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN 188
           DL  N   G            LK L  LN+  N     I P    L        ++N
Sbjct: 250 DLRNNRIYGTLP----QGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANN 301

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-05
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND----SILPYLNTLTSLTT 182
           ++Q LD+     +   + R  +    L+Q +++ L D    +     I   L    +L  
Sbjct: 3   DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 183 LILSDNSIEGSRTKQGLANLRY----LQVLDLSGNFN 215
           L L  N +        L  L+     +Q L L     
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 4e-04
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-----NT 176
             P   L+ L L     +    +    +  +   L+ L+L +N   D+ +  L       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 177 LTSLTTLILSDNSIEG 192
              L  L+L D     
Sbjct: 425 GCLLEQLVLYDIYWSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLLR 229
            + +L +    +  +R  + L  L+  QV+ L     +T      +   LR
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALR 52

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 8e-05
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L  +        +  LDL  N    +       +  +L+ L++L    +      +  + 
Sbjct: 10  LTVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQA--SDNALENVDGVA 62

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
            L  L  L+L +N ++ S   Q L +   L +L+L GN
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
              LDL  N  T I +      F +LK L  L L +N  +         L  L  L LS 
Sbjct: 33  TALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 188 NSIEG 192
           N ++ 
Sbjct: 89  NQLKE 93

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 115 LLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL 174
           L L+++       L  L        G  +        +L +L  L   DN  +D  +  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPL 191

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
            +L +L  + L +N I        LAN   L ++ L+
Sbjct: 192 ASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
           +L     +  G +   D++      L  +TTL      +    T +G+  L  L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 212 GNF 214
            N 
Sbjct: 72  DNQ 74

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
            +++      +L  L    N  + I          SL  L  ++L +N  +D  +  L  
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDI------SPLASLPNLIEVHLKNNQISD--VSPLAN 215

Query: 177 LTSLTTLILSD 187
            ++L  + L++
Sbjct: 216 TSNLFIVTLTN 226

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
           +  +    NL      D++    N L S+  +I +++ I+     QG+  L  +  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLN 76

Query: 212 GN 213
           GN
Sbjct: 77  GN 78

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 14/134 (10%)

Query: 74  MSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDL 133
             +   D  E  +          +    +          ++     SL      L+ L++
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 134 PGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS 193
             N    +             +L+ L    N   +  +P      +L  L +  N +   
Sbjct: 292 SNNKLIEL--------PALPPRLERLIASFNHLAE--VP--ELPQNLKQLHVEYNPL--R 337

Query: 194 RTKQGLANLRYLQV 207
                  ++  L++
Sbjct: 338 EFPDIPESVEDLRM 351

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 154 KQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK---QGLANLRYLQVLDL 210
           K LK+  +       S+   L    S+  ++LS N+I     +   + +A+ + L++ + 
Sbjct: 8   KSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 211 SGNFN 215
           S  F 
Sbjct: 67  SDIFT 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.39
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.37
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.37
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.3
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.28
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.27
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.21
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.18
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.12
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.07
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.02
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.01
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.97
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.92
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.59
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.93
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.83
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.57
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.06
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.01

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.3e-25  Score=188.54  Aligned_cols=158  Identities=28%  Similarity=0.434  Sum_probs=134.3

Q ss_pred             CCCHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCceecCCC--CcEEEEecCC-CccccccCC
Q 027045           35 ACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCD-DWEGVKCNATT--RRVMQLSLNE-TIKFNYSSG  110 (229)
Q Consensus        35 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C~-~w~gv~C~~~~--~~v~~L~L~~-~l~~~~~~~  110 (229)
                      -|.++|++||++||+++.    +|.   .+.+|..     ++|||. .|.||+|+...  .||++|+|++ ++.|.++  
T Consensus         2 ~c~~~e~~aLl~~k~~~~----~~~---~l~sW~~-----~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~--   67 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLG----NPT---TLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP--   67 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT----CCG---GGTTCCT-----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE--
T ss_pred             CCCHHHHHHHHHHHHHCC----CCC---cCCCCCC-----CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCC--
Confidence            388999999999999997    443   6889987     689993 39999998633  4899999999 8887211  


Q ss_pred             CCCccccCCcccCCCCCCcEEeCCC-CcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCc
Q 027045          111 SGSALLLNMSLFHPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS  189 (229)
Q Consensus       111 ~~~~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  189 (229)
                             -+..++++++|++|+|++ |+++|.+|.    .|+++++|++|++++|++++..+..+..+.+|+++++++|.
T Consensus        68 -------lp~~l~~L~~L~~L~Ls~~N~l~g~iP~----~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~  136 (313)
T d1ogqa_          68 -------IPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             -------CCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             -------CChHHhcCcccccccccccccccccccc----ccccccccchhhhccccccccccccccchhhhccccccccc
Confidence                   235678899999999986 889988998    89999999999999999998888888899999999999999


Q ss_pred             CCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          190 IEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       190 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +.+.+|. .+.+++.++++++++|.+++.
T Consensus       137 ~~~~~p~-~l~~l~~L~~l~l~~n~l~~~  164 (313)
T d1ogqa_         137 LSGTLPP-SISSLPNLVGITFDGNRISGA  164 (313)
T ss_dssp             EESCCCG-GGGGCTTCCEEECCSSCCEEE
T ss_pred             ccccCch-hhccCcccceeeccccccccc
Confidence            8887887 789999999999999988754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=4.4e-18  Score=132.88  Aligned_cols=126  Identities=27%  Similarity=0.334  Sum_probs=108.1

Q ss_pred             CCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccccc
Q 027045           81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF  150 (229)
Q Consensus        81 ~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  150 (229)
                      .|..|.|.+.         ...++.|+|++ .+.+          .+....|.++++|++|++++|++.+..+.    .|
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~----------~~~~~~f~~l~~L~~L~L~~N~i~~~~~~----~~   74 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR----------ISSDGLFGRLPHLVKLELKRNQLTGIEPN----AF   74 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS----------BCCSCSGGGCTTCCEEECCSSCCCCBCTT----TT
T ss_pred             cCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcc----------cccccccCCCceEeeeecccccccccccc----cc
Confidence            5777778541         23678888888 7765          34566789999999999999999998888    99


Q ss_pred             CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCc
Q 027045          151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSL  221 (229)
Q Consensus       151 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~  221 (229)
                      ..+++|++|++++|+++...|..|.++++|++|+|++|+|++ +|...|..+++|++|+|++|.+.....+
T Consensus        75 ~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_          75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             ccccccceeeeccccccccCHHHHhCCCcccccccCCccccc-cCHHHhcCCcccccccccccccccccch
Confidence            999999999999999998888889999999999999999998 7766899999999999999999876443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=7.5e-15  Score=106.67  Aligned_cols=103  Identities=23%  Similarity=0.335  Sum_probs=87.4

Q ss_pred             EEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccc
Q 027045           96 QLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL  174 (229)
Q Consensus        96 ~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  174 (229)
                      .|++++ +++.           +  ..+..+++|++|++++|+|+. +|+    .+..+++|+.|++++|.++. +| .+
T Consensus         2 ~L~Ls~n~l~~-----------l--~~l~~l~~L~~L~ls~N~l~~-lp~----~~~~l~~L~~L~l~~N~i~~-l~-~~   61 (124)
T d1dcea3           2 VLHLAHKDLTV-----------L--CHLEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALEN-VD-GV   61 (124)
T ss_dssp             EEECTTSCCSS-----------C--CCGGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCC-CG-GG
T ss_pred             EEEcCCCCCCC-----------C--cccccCCCCCEEECCCCccCc-chh----hhhhhhcccccccccccccc-cC-cc
Confidence            477777 6654           2  347788999999999999998 676    89999999999999999994 55 48


Q ss_pred             cCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCCcCCCCC
Q 027045          175 NTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       175 ~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      ..+++|++|++++|+++. ++. ..+..+++|++|++++|+++..+
T Consensus        62 ~~l~~L~~L~l~~N~i~~-~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          62 ANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             TTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ccccccCeEECCCCccCC-CCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            999999999999999997 542 36889999999999999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=1.1e-14  Score=113.15  Aligned_cols=121  Identities=21%  Similarity=0.199  Sum_probs=98.6

Q ss_pred             CceecCCCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcc-ccccccccCCCCCCcEEEc
Q 027045           84 GVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIY-ENRAYDSFGSLKQLKMLNL  161 (229)
Q Consensus        84 gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~l~~L~~L~L  161 (229)
                      +-.|..     +.++.++ ++.. +|.+           +  .+.+++|+|++|+|++.+ +.    .|..+++|++|++
T Consensus         5 ~C~C~~-----~~v~Cs~~~L~~-iP~~-----------l--p~~l~~L~Ls~N~i~~~~~~~----~f~~l~~L~~L~L   61 (192)
T d1w8aa_           5 MCHCEG-----TTVDCTGRGLKE-IPRD-----------I--PLHTTELLLNDNELGRISSDG----LFGRLPHLVKLEL   61 (192)
T ss_dssp             TSEEET-----TEEECTTSCCSS-CCSC-----------C--CTTCSEEECCSCCCCSBCCSC----SGGGCTTCCEEEC
T ss_pred             CCEEcC-----CEEEEeCCCcCc-cCCC-----------C--CCCCCEEEeCCCCCccccccc----ccCCCceEeeeec
Confidence            446743     3588888 7763 4422           1  157899999999998755 45    7889999999999


Q ss_pred             CCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC--CcccCCCCC
Q 027045          162 GDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG--SLTRLGRLL  228 (229)
Q Consensus       162 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~  228 (229)
                      ++|.+....+..+..+++|++|+|++|++++ +|...|.++++|++|+|++|+|+++.  .|..+.+|.
T Consensus        62 ~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~-l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  129 (192)
T d1w8aa_          62 KRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             CSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             cccccccccccccccccccceeeeccccccc-cCHHHHhCCCcccccccCCccccccCHHHhcCCcccc
Confidence            9999998889999999999999999999998 76658999999999999999999873  455666553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.9e-14  Score=108.22  Aligned_cols=109  Identities=25%  Similarity=0.265  Sum_probs=91.0

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .++.+|+|++ ++..           + ...+..+++|++|++++|+|+.. +     .|..+++|++|++++|+++...
T Consensus        18 ~~lr~L~L~~n~I~~-----------i-~~~~~~l~~L~~L~Ls~N~i~~l-~-----~~~~l~~L~~L~ls~N~i~~l~   79 (162)
T d1a9na_          18 VRDRELDLRGYKIPV-----------I-ENLGATLDQFDAIDFSDNEIRKL-D-----GFPLLRRLKTLLVNNNRICRIG   79 (162)
T ss_dssp             TSCEEEECTTSCCCS-----------C-CCGGGGTTCCSEEECCSSCCCEE-C-----CCCCCSSCCEEECCSSCCCEEC
T ss_pred             CcCcEEECCCCCCCc-----------c-CccccccccCCEEECCCCCCCcc-C-----CcccCcchhhhhcccccccCCC
Confidence            4678999999 7765           3 23456789999999999999974 4     6889999999999999999655


Q ss_pred             cccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCCcCCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      +..+..+++|++|++++|+++. ++. ..+..+++|++|++++|+++..+
T Consensus        80 ~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          80 EGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             ccccccccccccceeccccccc-cccccccccccccchhhcCCCcccccc
Confidence            5556789999999999999987 543 35788999999999999997765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=7.8e-14  Score=101.14  Aligned_cols=84  Identities=31%  Similarity=0.322  Sum_probs=74.8

Q ss_pred             cEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEE
Q 027045          129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL  208 (229)
Q Consensus       129 ~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L  208 (229)
                      |+|++++|+++. ++     .+..+++|++|++++|.++ .+|+.++.+++|+.|++++|++++ +|  .+.++++|++|
T Consensus         1 R~L~Ls~n~l~~-l~-----~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~--~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-----HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSS-CC-----CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEE
T ss_pred             CEEEcCCCCCCC-Cc-----ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC--ccccccccCeE
Confidence            579999999997 44     6889999999999999999 578889999999999999999998 76  48999999999


Q ss_pred             eccCCcCCCCCCcc
Q 027045          209 DLSGNFNITSGSLT  222 (229)
Q Consensus       209 ~L~~N~l~~~~~~~  222 (229)
                      ++++|+++..+.+.
T Consensus        71 ~l~~N~i~~~~~~~   84 (124)
T d1dcea3          71 LLCNNRLQQSAAIQ   84 (124)
T ss_dssp             ECCSSCCCSSSTTG
T ss_pred             ECCCCccCCCCCch
Confidence            99999999875443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.8e-14  Score=113.77  Aligned_cols=100  Identities=29%  Similarity=0.296  Sum_probs=86.0

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      +....|..+++|+.|++++|+++++.+.    .|.++++|+++++++|++++..|..|..+++|++|++++|++.+ ++.
T Consensus       144 i~~~~f~~~~~L~~L~l~~N~l~~l~~~----~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~-~~~  218 (284)
T d1ozna_         144 LPDDTFRDLGNLTHLFLHGNRISSVPER----AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPT  218 (284)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCH
T ss_pred             cChhHhccccchhhcccccCcccccchh----hhccccccchhhhhhccccccChhHhhhhhhccccccccccccc-ccc
Confidence            4456688888999999999999987777    88899999999999999998888999999999999999999998 555


Q ss_pred             hhcCCCCCCCEEeccCCcCCCCCCc
Q 027045          197 QGLANLRYLQVLDLSGNFNITSGSL  221 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N~l~~~~~~  221 (229)
                      ..|+.+++|++|++++|++...+..
T Consensus       219 ~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         219 EALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             HHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cccccccccCEEEecCCCCCCCccc
Confidence            5889999999999999988876443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.2e-13  Score=101.04  Aligned_cols=97  Identities=22%  Similarity=0.138  Sum_probs=81.1

Q ss_pred             cccCCCCCCcEEeCCCC-cCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          120 SLFHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      ..+..+++|++|++++| .++.+.+.    .|.++++|+.|++++|+++...|..|..+++|++|+|++|+++. +|...
T Consensus        25 ~~l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~   99 (156)
T d2ifga3          25 HHLPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKT   99 (156)
T ss_dssp             TTSCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTT
T ss_pred             ccccCccccCeeecCCCccccccCch----hhccccccCcceeeccccCCcccccccccccccceeccCCCCcc-cChhh
Confidence            34667889999999766 58887677    89999999999999999998778889999999999999999997 87745


Q ss_pred             cCCCCCCCEEeccCCcCCCCCCcc
Q 027045          199 LANLRYLQVLDLSGNFNITSGSLT  222 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~l~~~~~~~  222 (229)
                      |.. .+|++|+|++|++.....+.
T Consensus       100 ~~~-~~l~~L~L~~Np~~C~C~~~  122 (156)
T d2ifga3         100 VQG-LSLQELVLSGNPLHCSCALR  122 (156)
T ss_dssp             TCS-CCCCEEECCSSCCCCCGGGH
T ss_pred             hcc-ccccccccCCCcccCCchHH
Confidence            544 47999999999997654443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2e-13  Score=103.51  Aligned_cols=95  Identities=25%  Similarity=0.238  Sum_probs=81.1

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..|.+..++++|+|++|+|+.+ +.    .+..+++|+.|++++|.++. + +.+..+++|++|++++|+++. ++...+
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i-~~----~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~-l~~~~~   83 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVI-EN----LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR-IGEGLD   83 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC-CC----GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE-ECSCHH
T ss_pred             HhccCcCcCcEEECCCCCCCcc-Cc----cccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccC-CCcccc
Confidence            3466778999999999999995 65    67889999999999999984 4 358899999999999999998 766456


Q ss_pred             CCCCCCCEEeccCCcCCCCCCcc
Q 027045          200 ANLRYLQVLDLSGNFNITSGSLT  222 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~~~~~  222 (229)
                      ..+++|++|++++|+++.++.+.
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l~  106 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDLD  106 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGG
T ss_pred             ccccccccceecccccccccccc
Confidence            78999999999999999875433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-12  Score=106.53  Aligned_cols=97  Identities=27%  Similarity=0.301  Sum_probs=78.5

Q ss_pred             CCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChh
Q 027045          118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ  197 (229)
Q Consensus       118 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  197 (229)
                      ....+..+.++++|++++|.++...+.    .+..++.|+.+++++|++++..+..|..+++|++|+|++|+|+. +|. 
T Consensus       116 ~~~~~~~l~~l~~L~l~~n~l~~l~~~----~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~-  189 (266)
T d1p9ag_         116 PLGALRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPK-  189 (266)
T ss_dssp             CSSTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCT-
T ss_pred             eccccccccccccccccccccceeccc----cccccccchhcccccccccccCccccccccccceeecccCCCcc-cCh-
Confidence            345566778888888888888886666    77788889999999999987777778888999999999999885 887 


Q ss_pred             hcCCCCCCCEEeccCCcCCCCCC
Q 027045          198 GLANLRYLQVLDLSGNFNITSGS  220 (229)
Q Consensus       198 ~~~~l~~L~~L~L~~N~l~~~~~  220 (229)
                      .+..+++|+.|+|++|++..-+.
T Consensus       190 ~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         190 GFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             TTTTTCCCSEEECCSCCBCCSGG
T ss_pred             hHCCCCCCCEEEecCCCCCCCcc
Confidence            67788889999999998876433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1e-12  Score=107.52  Aligned_cols=106  Identities=26%  Similarity=0.273  Sum_probs=85.8

Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      +....+...++|+.+++++|+++++.+.    .|..+++|+.|++++|.+++..+..|.++++|+.+++++|++++..|.
T Consensus       120 ~~~~~~~~~~~L~~l~l~~N~l~~i~~~----~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~  195 (284)
T d1ozna_         120 LGPGLFRGLAALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (284)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhcccchhhhccccccccChh----HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChh
Confidence            3345667788889999999999886666    788889999999999999877788888999999999999999884454


Q ss_pred             hhcCCCCCCCEEeccCCcCCCCC--CcccCCCC
Q 027045          197 QGLANLRYLQVLDLSGNFNITSG--SLTRLGRL  227 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L  227 (229)
                       .|.++++|++|++++|++.+..  .+..+.+|
T Consensus       196 -~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         196 -AFRDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (284)
T ss_dssp             -TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             -Hhhhhhhccccccccccccccccccccccccc
Confidence             8899999999999999998873  34444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.9e-12  Score=103.27  Aligned_cols=103  Identities=23%  Similarity=0.154  Sum_probs=80.3

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..+..+++|++|++++|.+.+..+.    .+..+.++++|++++|.++...+..+..+++|+.+++++|++++ ++...|
T Consensus        94 ~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~-~~~~~~  168 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLL  168 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTT
T ss_pred             cccccccccccccccccccceeecc----ccccccccccccccccccceeccccccccccchhcccccccccc-cCcccc
Confidence            3456677777777777777776665    67778888888888888886666777888999999999999998 665578


Q ss_pred             CCCCCCCEEeccCCcCCCCC-CcccCCCC
Q 027045          200 ANLRYLQVLDLSGNFNITSG-SLTRLGRL  227 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~~-~~~~l~~L  227 (229)
                      ..+++|++|+|++|+|+.++ .+..+.+|
T Consensus       169 ~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L  197 (266)
T d1p9ag_         169 NGLENLDTLLLQENSLYTIPKGFFGSHLL  197 (266)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCCC
T ss_pred             ccccccceeecccCCCcccChhHCCCCCC
Confidence            89999999999999999774 34334444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.30  E-value=2.8e-11  Score=94.01  Aligned_cols=126  Identities=27%  Similarity=0.304  Sum_probs=92.4

Q ss_pred             CcEEEEecCC-CccccccC-CCCCccc--------cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEc
Q 027045           92 RRVMQLSLNE-TIKFNYSS-GSGSALL--------LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNL  161 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~-~~~~~~~--------l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~L  161 (229)
                      .+++.|++++ .+.+..+- ....+..        .....+.+++.|+.|++++|.+... +     .+..+++|+.|++
T Consensus        62 ~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~-~-----~~~~l~~L~~L~l  135 (199)
T d2omxa2          62 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-D-----PLKNLTNLNRLEL  135 (199)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-G-----GGTTCTTCSEEEC
T ss_pred             CCcCcCccccccccCcccccCCcccccccccccccccccccccccccccccccccccccc-c-----ccchhhhhHHhhh
Confidence            4678888888 66652110 0001111        1123466777777777777777663 2     5778999999999


Q ss_pred             CCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045          162 GDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       162 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                      ++|.+.. + +.+..+++|+.|++++|++++ ++  .++++++|++|++++|++++++.+..+++|.
T Consensus       136 ~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~--~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~  197 (199)
T d2omxa2         136 SSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK--PLANLTTLERLDISSNKVSDISVLAKLTNLE  197 (199)
T ss_dssp             CSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             hhhhhcc-c-ccccccccccccccccccccC-Cc--cccCCCCCCEEECCCCCCCCCccccCCCCCC
Confidence            9999873 4 358889999999999999988 65  4889999999999999999987777787775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.28  E-value=8.5e-13  Score=109.35  Aligned_cols=92  Identities=24%  Similarity=0.193  Sum_probs=78.5

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (229)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  198 (229)
                      +..+..++.++.+++++|.+++.+|     .+..+++|+.|++++|+++|.+|+.++++++|++|+|++|+++|.+|.  
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~-----~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--  286 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--  286 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--
T ss_pred             ccccccccccccccccccccccccc-----ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC--
Confidence            3456778899999999999988655     688889999999999999989999999999999999999999987885  


Q ss_pred             cCCCCCCCEEeccCCc-CCC
Q 027045          199 LANLRYLQVLDLSGNF-NIT  217 (229)
Q Consensus       199 ~~~l~~L~~L~L~~N~-l~~  217 (229)
                      ++++.+|+.+++++|+ +.|
T Consensus       287 ~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEES
T ss_pred             cccCCCCCHHHhCCCccccC
Confidence            6788899999999987 454

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.28  E-value=8.2e-12  Score=102.80  Aligned_cols=95  Identities=16%  Similarity=0.157  Sum_probs=72.9

Q ss_pred             CCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChh
Q 027045          118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ  197 (229)
Q Consensus       118 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  197 (229)
                      ....|.+++.+++|++++|.+++..+.    .+.++++|++|+|++|+++ .+|..+..+++|++|+|++|+|+. ++..
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~----~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~-i~~~  260 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSN  260 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTT
T ss_pred             ChhHhhccccccccccccccccccccc----cccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc-cChh
Confidence            345677788888888888888887676    7788888888888888887 567778888888888888888886 5543


Q ss_pred             hc------CCCCCCCEEeccCCcCCCC
Q 027045          198 GL------ANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       198 ~~------~~l~~L~~L~L~~N~l~~~  218 (229)
                      .|      ....+|+.|++++|+++.+
T Consensus       261 ~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         261 DFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             SSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             hccCcchhcccCCCCEEECCCCcCccC
Confidence            33      3467788888888887654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=2.7e-11  Score=94.07  Aligned_cols=73  Identities=34%  Similarity=0.392  Sum_probs=42.8

Q ss_pred             cCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045          150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL  227 (229)
Q Consensus       150 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L  227 (229)
                      +..++.|+.|++++|.+..  ...+..+++|+.|++++|++.. ++  .+..+++|+.|++.+|++++...+..+.+|
T Consensus       102 l~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~--~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L  174 (199)
T d2omxa2         102 LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLNFSSNQVTDLKPLANLTTL  174 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             ccccccccccccccccccc--ccccchhhhhHHhhhhhhhhcc-cc--cccccccccccccccccccCCccccCCCCC
Confidence            4455555555555555442  1235566666677777666654 43  366667777777777777666555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=5.1e-11  Score=93.28  Aligned_cols=96  Identities=35%  Similarity=0.386  Sum_probs=63.8

Q ss_pred             cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~  201 (229)
                      +..+++|+.|++++|.+.. ++     .+..++.++.+++++|.+++  +..+..+++|+.+++++|++++ ++.  +.+
T Consensus       108 l~~l~~L~~L~l~~~~~~~-~~-----~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~--l~~  176 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP--LAG  176 (210)
T ss_dssp             GTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG--GTT
T ss_pred             ccccccccccccccccccc-cc-----cccccccccccccccccccc--cccccccccccccccccccccc-ccc--ccC
Confidence            3334444444444444433 11     34555556666666666553  3346678889999999999987 653  889


Q ss_pred             CCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045          202 LRYLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       202 l~~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                      +++|+.|++++|+++.++.+..+.+|.
T Consensus       177 l~~L~~L~Ls~N~i~~l~~l~~l~~L~  203 (210)
T d1h6ta2         177 LTKLQNLYLSKNHISDLRALAGLKNLD  203 (210)
T ss_dssp             CTTCCEEECCSSCCCBCGGGTTCTTCS
T ss_pred             CCCCCEEECCCCCCCCChhhcCCCCCC
Confidence            999999999999998877676666664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.5e-11  Score=91.05  Aligned_cols=95  Identities=20%  Similarity=0.270  Sum_probs=76.3

Q ss_pred             CCCCceecC-----------CCCcEEEEecCC-C-ccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccc
Q 027045           81 DWEGVKCNA-----------TTRRVMQLSLNE-T-IKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAY  147 (229)
Q Consensus        81 ~w~gv~C~~-----------~~~~v~~L~L~~-~-l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  147 (229)
                      .+.+++|..           .-.++++|++.+ + +.           .++...|.++++|+.|++++|+|+.+.+.   
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~-----------~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~---   74 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ-----------HLELRDLRGLGELRNLTIVKSGLRFVAPD---   74 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC-----------EECGGGSCSCCCCSEEECCSSCCCEECTT---
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCcccc-----------ccCchhhccccccCcceeeccccCCcccc---
Confidence            577788864           113567777765 3 44           37778899999999999999999998787   


Q ss_pred             cccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCC
Q 027045          148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIE  191 (229)
Q Consensus       148 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  191 (229)
                       .|..+++|++|+|++|+++. +|.......+|+.|+|++|.+.
T Consensus        75 -~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          75 -AFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             -GGGSCSCCCEEECCSSCCSC-CCSTTTCSCCCCEEECCSSCCC
T ss_pred             -cccccccccceeccCCCCcc-cChhhhccccccccccCCCccc
Confidence             89999999999999999994 5544444457999999999996

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=5.8e-11  Score=97.60  Aligned_cols=89  Identities=29%  Similarity=0.292  Sum_probs=82.4

Q ss_pred             CCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCC
Q 027045          125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY  204 (229)
Q Consensus       125 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~  204 (229)
                      +++|+.|++++|.+++..+.    .|..++.+++|++++|.+++..+..+.++++|++|+|++|+++. +|. .+.++++
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~----~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~-~l~~l~~  243 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG-GLADHKY  243 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTG----GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCT-TTTTCSS
T ss_pred             CCccCEEECCCCcCCCCChh----Hhhccccccccccccccccccccccccccccceeeecccccccc-ccc-ccccccC
Confidence            57899999999999998887    89999999999999999998888889999999999999999997 887 8999999


Q ss_pred             CCEEeccCCcCCCCC
Q 027045          205 LQVLDLSGNFNITSG  219 (229)
Q Consensus       205 L~~L~L~~N~l~~~~  219 (229)
                      |++|++++|+|+.++
T Consensus       244 L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         244 IQVVYLHNNNISAIG  258 (305)
T ss_dssp             CCEEECCSSCCCCCC
T ss_pred             CCEEECCCCccCccC
Confidence            999999999999873

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=6.2e-11  Score=92.82  Aligned_cols=113  Identities=30%  Similarity=0.295  Sum_probs=90.8

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .++++|++++ .+.+           +  ..+..+++|++|++++|++++ +|     .+..+++|+.|++++|.+..  
T Consensus        68 ~~L~~L~L~~n~i~~-----------l--~~~~~l~~L~~L~l~~n~i~~-l~-----~l~~l~~L~~L~l~~~~~~~--  126 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTD-----------I--KPLANLKNLGWLFLDENKVKD-LS-----SLKDLKKLKSLSLEHNGISD--  126 (210)
T ss_dssp             TTCCEEECCSSCCCC-----------C--GGGTTCTTCCEEECCSSCCCC-GG-----GGTTCTTCCEEECTTSCCCC--
T ss_pred             CCCCEEeCCCccccC-----------c--cccccCccccccccccccccc-cc-----cccccccccccccccccccc--
Confidence            3688888888 7765           2  235778899999999999987 44     57889999999999998873  


Q ss_pred             cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                      ...+..+++++.++++.|.+++ .+  .+..+++|+++++++|+++++..+..+.+|.
T Consensus       127 ~~~l~~l~~l~~l~~~~n~l~~-~~--~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~  181 (210)
T d1h6ta2         127 INGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ  181 (210)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred             cccccccccccccccccccccc-cc--cccccccccccccccccccccccccCCCCCC
Confidence            3457888999999999999986 43  4778999999999999999886666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=8.7e-11  Score=98.67  Aligned_cols=95  Identities=27%  Similarity=0.319  Sum_probs=68.5

Q ss_pred             CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  202 (229)
                      ..++.++.++++.|.+++. +     .+..+++++.|++++|++++. + .+..+++|+.|++++|++++ ++  .+.++
T Consensus       282 ~~~~~l~~l~~~~n~l~~~-~-----~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~--~l~~l  350 (384)
T d2omza2         282 AGLTALTNLELNENQLEDI-S-----PISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS--SLANL  350 (384)
T ss_dssp             TTCTTCSEEECCSSCCSCC-G-----GGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG--GGGGC
T ss_pred             ccccccccccccccccccc-c-----ccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch--hHcCC
Confidence            3444445555555554442 1     467778888999999988864 3 37788899999999999887 65  47888


Q ss_pred             CCCCEEeccCCcCCCCCCcccCCCCC
Q 027045          203 RYLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       203 ~~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                      ++|++|++++|++++...+..+.+|.
T Consensus       351 ~~L~~L~l~~N~l~~l~~l~~l~~L~  376 (384)
T d2omza2         351 TNINWLSAGHNQISDLTPLANLTRIT  376 (384)
T ss_dssp             TTCCEEECCSSCCCBCGGGTTCTTCS
T ss_pred             CCCCEEECCCCcCCCChhhccCCCCC
Confidence            99999999999988876566666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=4.2e-10  Score=88.67  Aligned_cols=94  Identities=31%  Similarity=0.338  Sum_probs=70.4

Q ss_pred             CCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCC
Q 027045          124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR  203 (229)
Q Consensus       124 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~  203 (229)
                      ..+.++.+.++++.+....      .+..+++|++|++++|.+++.  ..++++++|+.|++++|++++ ++.  +.+++
T Consensus       127 ~~~~~~~l~~~~~~~~~~~------~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~--l~~l~  195 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQITNIS------PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-ISP--LASLP  195 (227)
T ss_dssp             TCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG--GGGCT
T ss_pred             cccchhhhhchhhhhchhh------hhccccccccccccccccccc--hhhcccccceecccCCCccCC-Chh--hcCCC
Confidence            3344444444444444321      466788899999999998742  348899999999999999987 764  88999


Q ss_pred             CCCEEeccCCcCCCCCCcccCCCCC
Q 027045          204 YLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       204 ~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                      +|++|++++|++++++.+..+.+|.
T Consensus       196 ~L~~L~Ls~N~lt~i~~l~~l~~L~  220 (227)
T d1h6ua2         196 NLIEVHLKNNQISDVSPLANTSNLF  220 (227)
T ss_dssp             TCCEEECTTSCCCBCGGGTTCTTCC
T ss_pred             CCCEEECcCCcCCCCcccccCCCCC
Confidence            9999999999999887777777664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=4.9e-10  Score=93.95  Aligned_cols=95  Identities=27%  Similarity=0.324  Sum_probs=62.5

Q ss_pred             CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  202 (229)
                      ..+++|++|++++|++++. +     .+..++.++.++++.|.+++  +..+..++++++|++++|++++ ++  .+..+
T Consensus       260 ~~~~~L~~L~l~~~~l~~~-~-----~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~-l~--~l~~l  328 (384)
T d2omza2         260 SGLTKLTELKLGANQISNI-S-----PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD-IS--PVSSL  328 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCC-G-----GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSC-CG--GGGGC
T ss_pred             cccccCCEeeccCcccCCC-C-----cccccccccccccccccccc--ccccchhcccCeEECCCCCCCC-Cc--ccccC
Confidence            3334444444444444432 1     23444445555555555542  2346777899999999999998 65  37889


Q ss_pred             CCCCEEeccCCcCCCCCCcccCCCCC
Q 027045          203 RYLQVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       203 ~~L~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                      ++|++|++++|++++++.+..+++|.
T Consensus       329 ~~L~~L~L~~n~l~~l~~l~~l~~L~  354 (384)
T d2omza2         329 TKLQRLFFANNKVSDVSSLANLTNIN  354 (384)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCC
T ss_pred             CCCCEEECCCCCCCCChhHcCCCCCC
Confidence            99999999999999887777777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.8e-10  Score=88.83  Aligned_cols=105  Identities=20%  Similarity=0.165  Sum_probs=64.7

Q ss_pred             cccCCCCCCcEEeCCCCcCCCcccccc---------------------ccccCCC-CCCcEEEcCCCCCCCCCcccccCC
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRA---------------------YDSFGSL-KQLKMLNLGDNFFNDSILPYLNTL  177 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~---------------------~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l  177 (229)
                      ..|.++++|+++++++|.+....+...                     ...|.++ ..++.|++++|+++. ++......
T Consensus        97 ~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~  175 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNG  175 (242)
T ss_dssp             TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTT
T ss_pred             ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccc
Confidence            345666777777777776654322100                     0123333 256667777777764 33333344


Q ss_pred             CCccEE-eccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC--CcccCCC
Q 027045          178 TSLTTL-ILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG--SLTRLGR  226 (229)
Q Consensus       178 ~~L~~L-~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~  226 (229)
                      .+++.+ ++++|+++. +|...|.++++|++|++++|+++.++  .+..+.+
T Consensus       176 ~~l~~~~~l~~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  226 (242)
T d1xwdc1         176 TQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK  226 (242)
T ss_dssp             CCEEEEECTTCTTCCC-CCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred             hhhhcccccccccccc-ccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcc
Confidence            554444 567778886 87757899999999999999999773  3444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=9.5e-10  Score=86.59  Aligned_cols=82  Identities=27%  Similarity=0.359  Sum_probs=70.8

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..+...++|++|++++|.++.. +     .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++ ++.  +
T Consensus       145 ~~~~~~~~L~~L~l~~n~~~~~-~-----~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~--l  213 (227)
T d1h6ua2         145 SPLAGLTNLQYLSIGNAQVSDL-T-----PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP--L  213 (227)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG--G
T ss_pred             hhhccccccccccccccccccc-h-----hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc--c
Confidence            3467788999999999999873 3     58899999999999999985 44 38899999999999999997 764  8


Q ss_pred             CCCCCCCEEeccC
Q 027045          200 ANLRYLQVLDLSG  212 (229)
Q Consensus       200 ~~l~~L~~L~L~~  212 (229)
                      +++++|++|++++
T Consensus       214 ~~l~~L~~L~lsn  226 (227)
T d1h6ua2         214 ANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCTTCCEEEEEE
T ss_pred             ccCCCCCEEEeeC
Confidence            8999999999863

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=1.1e-12  Score=102.38  Aligned_cols=106  Identities=26%  Similarity=0.281  Sum_probs=85.4

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~  170 (229)
                      .+++.|+|++ ++..           +  +.+..+++|++|++++|+|+. +|.    .+..+++|++|++++|.++. +
T Consensus        48 ~~L~~L~Ls~n~I~~-----------i--~~l~~l~~L~~L~Ls~N~i~~-i~~----~~~~~~~L~~L~l~~N~i~~-l  108 (198)
T d1m9la_          48 KACKHLALSTNNIEK-----------I--SSLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-L  108 (198)
T ss_dssp             TTCCEEECSEEEESC-----------C--CCHHHHTTCCEEECCEEEECS-CSS----HHHHHHHCCEEECSEEECCC-H
T ss_pred             cccceeECcccCCCC-----------c--ccccCCccccChhhccccccc-ccc----cccccccccccccccccccc-c
Confidence            4678899988 7664           2  347788999999999999987 454    45556789999999999984 3


Q ss_pred             cccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCCcCCCC
Q 027045          171 LPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       171 p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                       +.+..+++|++|++++|+++. ++. ..+..+++|++|++++|++...
T Consensus       109 -~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         109 -SGIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             -HHHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             -ccccccccccccccccchhcc-ccccccccCCCccceeecCCCccccC
Confidence             347888999999999999987 543 3588999999999999987654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.97  E-value=3.9e-12  Score=99.23  Aligned_cols=91  Identities=26%  Similarity=0.361  Sum_probs=75.8

Q ss_pred             cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (229)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  199 (229)
                      ..+..+++|++|++++|+|+.+ +     .+..+++|++|++++|.++ .+|.....+++|++|++++|+++. ++  .+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-----~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~--~~  111 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-----SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GI  111 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-----CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH--HH
T ss_pred             hHHhcccccceeECcccCCCCc-c-----cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc--cc
Confidence            3467788999999999999974 4     5788999999999999998 566655566789999999999987 64  47


Q ss_pred             CCCCCCCEEeccCCcCCCCCC
Q 027045          200 ANLRYLQVLDLSGNFNITSGS  220 (229)
Q Consensus       200 ~~l~~L~~L~L~~N~l~~~~~  220 (229)
                      .++++|++|++++|+++.++.
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~  132 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGE  132 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHH
T ss_pred             cccccccccccccchhccccc
Confidence            888999999999999988743

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.4e-09  Score=84.62  Aligned_cols=87  Identities=17%  Similarity=0.153  Sum_probs=42.9

Q ss_pred             CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC-cccccCCCCccEEecc-CCcCCCCCChhhcCCCCC
Q 027045          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI-LPYLNTLTSLTTLILS-DNSIEGSRTKQGLANLRY  204 (229)
Q Consensus       127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls-~N~l~~~ip~~~~~~l~~  204 (229)
                      ++++|++++|+|+.+.+.    .|.++++|++|++++|.+...+ +..|..+++++++.+. .|++.. ++...|.++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~----~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l~~  104 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPN  104 (242)
T ss_dssp             CCSEEEEESCCCCEECTT----TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEECCTT
T ss_pred             CCCEEECcCCcCCccChh----Hhhccchhhhhhhccccccceeeccccccccccccccccccccccc-ccccccccccc
Confidence            455555555555553333    4555555555555555554322 2234555555555543 234443 32224555555


Q ss_pred             CCEEeccCCcCCCC
Q 027045          205 LQVLDLSGNFNITS  218 (229)
Q Consensus       205 L~~L~L~~N~l~~~  218 (229)
                      |+++++++|.+...
T Consensus       105 L~~l~l~~~~l~~~  118 (242)
T d1xwdc1         105 LQYLLISNTGIKHL  118 (242)
T ss_dssp             CCEEEEESCCCCSC
T ss_pred             ccccccchhhhccc
Confidence            55555555555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.68  E-value=7.3e-08  Score=79.07  Aligned_cols=97  Identities=22%  Similarity=0.218  Sum_probs=74.7

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  171 (229)
                      ++++|||++ ++.. +|           +   ..++|++|++++|+|+. +|.    .   +.+|+.|++++|+++ .++
T Consensus        39 ~l~~LdLs~~~L~~-lp-----------~---~~~~L~~L~Ls~N~l~~-lp~----~---~~~L~~L~l~~n~l~-~l~   94 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LP-----------E---LPPHLESLVASCNSLTE-LPE----L---PQSLKSLLVDNNNLK-ALS   94 (353)
T ss_dssp             TCSEEECTTSCCSC-CC-----------S---CCTTCSEEECCSSCCSS-CCC----C---CTTCCEEECCSSCCS-CCC
T ss_pred             CCCEEEeCCCCCCC-CC-----------C---CCCCCCEEECCCCCCcc-ccc----c---hhhhhhhhhhhcccc-hhh
Confidence            567899999 7764 22           1   24689999999999996 565    4   357899999999988 344


Q ss_pred             ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045          172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG  219 (229)
Q Consensus       172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~  219 (229)
                      ..   .+.|++|++++|.++. +|.  ++.+++|++|++++|.+....
T Consensus        95 ~l---p~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_          95 DL---PPLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             SC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSCCC
T ss_pred             hh---cccccccccccccccc-ccc--hhhhccceeeccccccccccc
Confidence            31   2469999999999987 875  678999999999999887653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.59  E-value=1.5e-07  Score=77.17  Aligned_cols=86  Identities=19%  Similarity=0.175  Sum_probs=69.0

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  205 (229)
                      .++++|||++|.++. +|+    .   +++|++|++++|+++ .+|..+   .+|+.|++++|+++. ++.  +  .+.|
T Consensus        38 ~~l~~LdLs~~~L~~-lp~----~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~--l--p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPE----L---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSD--L--PPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCS----C---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCS--C--CTTC
T ss_pred             cCCCEEEeCCCCCCC-CCC----C---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhh--h--cccc
Confidence            368899999999997 675    3   468999999999999 678654   578999999999986 653  2  2469


Q ss_pred             CEEeccCCcCCCCCCcccCCCCC
Q 027045          206 QVLDLSGNFNITSGSLTRLGRLL  228 (229)
Q Consensus       206 ~~L~L~~N~l~~~~~~~~l~~L~  228 (229)
                      ++|++++|.+...+.+..+.+|.
T Consensus       101 ~~L~L~~n~l~~lp~~~~l~~L~  123 (353)
T d1jl5a_         101 EYLGVSNNQLEKLPELQNSSFLK  123 (353)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCC
T ss_pred             ccccccccccccccchhhhccce
Confidence            99999999999887666565553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.4e-08  Score=74.64  Aligned_cols=88  Identities=23%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             cCCCCCCcEEeCCCCcCCCcc--ccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh---
Q 027045          122 FHPFEELQRLDLPGNWFTGIY--ENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK---  196 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~---  196 (229)
                      +..++.|++|++++|+|+...  +.    .+..+++|+.|++++|.++...+-.+....+|+.+++++|.+......   
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~----~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGT----HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHH----HHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            356789999999999998753  23    566789999999999999853332333445789999999999864332   


Q ss_pred             ---hhcCCCCCCCEEeccCCcC
Q 027045          197 ---QGLANLRYLQVLDLSGNFN  215 (229)
Q Consensus       197 ---~~~~~l~~L~~L~L~~N~l  215 (229)
                         ..+..+|+|++||  ++.+
T Consensus       137 y~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         137 YISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHHHHTTSTTCCEET--TEEC
T ss_pred             HHHHHHHHCCCCCEEC--cCCC
Confidence               1366789999886  5444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.8e-08  Score=85.47  Aligned_cols=110  Identities=22%  Similarity=0.205  Sum_probs=80.0

Q ss_pred             cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCc----cccccccccCCCCCCcEEEcCCCCCC
Q 027045           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGI----YENRAYDSFGSLKQLKMLNLGDNFFN  167 (229)
Q Consensus        93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~  167 (229)
                      +++.||++. ++++.          .-...+..+++++.|+|++|.++..    +..    .+..+++|++|||++|.++
T Consensus         3 ~l~~ld~~~~~i~~~----------~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~----~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           3 DIQSLDIQCEELSDA----------RWAELLPLLQQCQVVRLDDCGLTEARCKDISS----ALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEESCCCCHH----------HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH----HHHTCTTCCEEECTTCCCH
T ss_pred             CCCEEEeeCCcCChH----------HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHH----HHhcCCCCCEEECcCCcCC
Confidence            578899988 77651          1123355678999999999998742    233    5678899999999999986


Q ss_pred             CC----Cccccc-CCCCccEEeccCCcCCCC----CChhhcCCCCCCCEEeccCCcCCC
Q 027045          168 DS----ILPYLN-TLTSLTTLILSDNSIEGS----RTKQGLANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       168 ~~----~p~~l~-~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~  217 (229)
                      ..    +...+. ...+|++|+|++|+++..    ++. .+..+++|++|++++|.++.
T Consensus        69 ~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~-~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          69 DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHH
T ss_pred             hHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc-hhhccccccccccccccchh
Confidence            31    122232 235799999999999752    233 57788999999999998764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.3e-08  Score=76.24  Aligned_cols=69  Identities=22%  Similarity=0.138  Sum_probs=55.5

Q ss_pred             ccCCCCCCcEEEcCCCCCCCCC--cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045          149 SFGSLKQLKMLNLGDNFFNDSI--LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       149 ~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      .+..++.|++|++++|+++...  +..+..+++|+.|+|++|.++. ++...+.+...|+.|++++|+++..
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcC
Confidence            4457899999999999998543  3456788999999999999998 6543344556799999999999865

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.1e-06  Score=71.09  Aligned_cols=107  Identities=23%  Similarity=0.247  Sum_probs=71.8

Q ss_pred             CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCC-CCCCC
Q 027045           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDS  169 (229)
Q Consensus        92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~  169 (229)
                      .+++.+|+++ .+..          ..-...+.++++|++|+++++.+++..+.    .+..+++|++|+++++ .++..
T Consensus        46 ~~L~~LdLs~~~i~~----------~~l~~l~~~c~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~Ls~c~~itd~  111 (284)
T d2astb2          46 FRVQHMDLSNSVIEV----------STLHGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEF  111 (284)
T ss_dssp             BCCCEEECTTCEECH----------HHHHHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHH
T ss_pred             CCCCEEECCCCccCH----------HHHHHHHHhCCCcccccccccCCCcHHHH----HHhcCCCCcCcccccccccccc
Confidence            4678888887 5543          11123467788999999999988876666    7888889999999885 55532


Q ss_pred             -CcccccCCCCccEEeccCC-cCCCC-CChhhcC-CCCCCCEEeccCC
Q 027045          170 -ILPYLNTLTSLTTLILSDN-SIEGS-RTKQGLA-NLRYLQVLDLSGN  213 (229)
Q Consensus       170 -~p~~l~~l~~L~~L~Ls~N-~l~~~-ip~~~~~-~l~~L~~L~L~~N  213 (229)
                       +..-..++++|++|+++++ .++.. +.. .+. ..++|+.|++++.
T Consensus       112 ~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~-~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGY  158 (284)
T ss_dssp             HHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSC
T ss_pred             ccchhhHHHHhccccccccccccccccchh-hhcccccccchhhhccc
Confidence             1222356788999999875 45421 222 232 3578999998864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.83  E-value=2.1e-06  Score=70.92  Aligned_cols=97  Identities=26%  Similarity=0.217  Sum_probs=60.3

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcc----cccC--CCCccEEeccCCcCCCC-
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP----YLNT--LTSLTTLILSDNSIEGS-  193 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~--l~~L~~L~Ls~N~l~~~-  193 (229)
                      .+...++|+.|++++|.++..-.......+..+++|++|++++|.+++.-..    .+..  ...|++|++++|+++.. 
T Consensus       210 ~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~  289 (344)
T d2ca6a1         210 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  289 (344)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHH
Confidence            3556777888888888875431110001456778888888888887743222    2222  35688888888887641 


Q ss_pred             ---CChhhc-CCCCCCCEEeccCCcCCCC
Q 027045          194 ---RTKQGL-ANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       194 ---ip~~~~-~~l~~L~~L~L~~N~l~~~  218 (229)
                         +.. .+ .++++|++|++++|.+...
T Consensus       290 ~~~l~~-~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         290 VRTLKT-VIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHH-HHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHH-HHHccCCCCCEEECCCCcCCCc
Confidence               121 22 2567888888888888654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.74  E-value=3.4e-06  Score=69.54  Aligned_cols=92  Identities=22%  Similarity=0.201  Sum_probs=64.3

Q ss_pred             cCCCCCCcEEeCCCCcCCCc-----cccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCC
Q 027045          122 FHPFEELQRLDLPGNWFTGI-----YENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEG  192 (229)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  192 (229)
                      +...+.|+.|++++|+++..     +..    .+..+++|+.|++++|.++..    +...+..+++|++|++++|.+++
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~----~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhhhhhhcccccccccccccccccchhh----hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            34567889999999988642     222    466788899999999987632    33456778889999999998875


Q ss_pred             CCCh---hhcC--CCCCCCEEeccCCcCCC
Q 027045          193 SRTK---QGLA--NLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       193 ~ip~---~~~~--~l~~L~~L~L~~N~l~~  217 (229)
                      .-..   ..+.  ....|++|++++|+++.
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            2111   0222  23678999999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=4.3e-06  Score=70.30  Aligned_cols=91  Identities=23%  Similarity=0.179  Sum_probs=41.4

Q ss_pred             CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC----Cccccc-CCCCccEEeccCCcCCCC----CCh
Q 027045          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLN-TLTSLTTLILSDNSIEGS----RTK  196 (229)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~~~----ip~  196 (229)
                      ..|+.+++++|.++..........+...++|++|+|++|.+++.    ++..+. ..+.|++|+|++|+++..    ++.
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            45566666666555432110000122334566666666655421    122222 234456666666655431    111


Q ss_pred             hhcCCCCCCCEEeccCCcCCC
Q 027045          197 QGLANLRYLQVLDLSGNFNIT  217 (229)
Q Consensus       197 ~~~~~l~~L~~L~L~~N~l~~  217 (229)
                       .+..+++|++|++++|+++.
T Consensus       392 -~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         392 -TLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             -HHHHCCCCCEEECCSSSCCH
T ss_pred             -HHhcCCCCCEEECCCCcCCH
Confidence             23445556666666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.65  E-value=1.5e-05  Score=59.19  Aligned_cols=93  Identities=11%  Similarity=0.094  Sum_probs=56.5

Q ss_pred             ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCCCCh
Q 027045          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGSRTK  196 (229)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~  196 (229)
                      .+...+.|++|+|++|.+...........+...+.|++|++++|.++..    +-..+...++|++|++++|.+.. +..
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~-~g~  117 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV-LGN  117 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC-CCH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCC-ccH
Confidence            3556677888888888876432220011344567788888888887632    12235566778888888776553 211


Q ss_pred             -------hhcCCCCCCCEEeccCCc
Q 027045          197 -------QGLANLRYLQVLDLSGNF  214 (229)
Q Consensus       197 -------~~~~~l~~L~~L~L~~N~  214 (229)
                             ..+...++|+.|+++.+.
T Consensus       118 ~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         118 QVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCccEeeCcCCC
Confidence                   134456778888776653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=5.8e-05  Score=60.56  Aligned_cols=83  Identities=22%  Similarity=0.259  Sum_probs=46.9

Q ss_pred             CCCcEEeCCCC--cCCCc-cccccccccCCCCCCcEEEcCCC-CCCCCCcccccCCCCccEEeccC-CcCCCCCChhhcC
Q 027045          126 EELQRLDLPGN--WFTGI-YENRAYDSFGSLKQLKMLNLGDN-FFNDSILPYLNTLTSLTTLILSD-NSIEGSRTKQGLA  200 (229)
Q Consensus       126 ~~L~~L~Ls~N--~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ip~~~~~  200 (229)
                      +.|+.|++++.  .++.. +..    .+..+++|++|++++| .+++..+..+..+++|++|++++ +.+++.... .++
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~----l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~-~L~  222 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLST----LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELG  222 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHH----HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-GGG
T ss_pred             cccchhhhcccccccccccccc----cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHH-HHh
Confidence            56677776653  23321 111    2244666777777664 35555555666667777777766 345543332 456


Q ss_pred             CCCCCCEEeccCC
Q 027045          201 NLRYLQVLDLSGN  213 (229)
Q Consensus       201 ~l~~L~~L~L~~N  213 (229)
                      ++++|++|+++++
T Consensus       223 ~~~~L~~L~l~~~  235 (284)
T d2astb2         223 EIPTLKTLQVFGI  235 (284)
T ss_dssp             GCTTCCEEECTTS
T ss_pred             cCCCCCEEeeeCC
Confidence            6667777776665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.10  E-value=9.4e-05  Score=54.65  Aligned_cols=95  Identities=11%  Similarity=0.107  Sum_probs=66.0

Q ss_pred             CCCCCCcEEeCCCC-cCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCC----
Q 027045          123 HPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGS----  193 (229)
Q Consensus       123 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----  193 (229)
                      .+.+.|++|+|+++ .++...-......+...+.|++|++++|.++..    +...+...+.|++|+|++|.++..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34578999999874 565421111112567778899999999998732    223345668899999999998852    


Q ss_pred             CChhhcCCCCCCCEEeccCCcCCCC
Q 027045          194 RTKQGLANLRYLQVLDLSGNFNITS  218 (229)
Q Consensus       194 ip~~~~~~l~~L~~L~L~~N~l~~~  218 (229)
                      +-. .+...++|++|++++|.+...
T Consensus        92 l~~-aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          92 LLR-STLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHH-HTTTTCCCSEEECCCCSSCCC
T ss_pred             HHH-HHHhCCcCCEEECCCCcCCCc
Confidence            111 466778899999999877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.06  E-value=0.001  Score=48.51  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             CCcEEEEecCC-C-ccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCC
Q 027045           91 TRRVMQLSLNE-T-IKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND  168 (229)
Q Consensus        91 ~~~v~~L~L~~-~-l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~  168 (229)
                      ...+++|++++ + +....      . ..-...+...++|++|++++|.++...-......+...+.++.+++++|.++.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~------~-~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPT------L-KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHH------H-HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             CCCCcEEEcCCCCCCCHHH------H-HHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            35677888876 3 32200      0 00112355678889999999988654222111144566788899998888763


Q ss_pred             C----CcccccCCCCccEEec--cCCcCCCC----CChhhcCCCCCCCEEeccCCc
Q 027045          169 S----ILPYLNTLTSLTTLIL--SDNSIEGS----RTKQGLANLRYLQVLDLSGNF  214 (229)
Q Consensus       169 ~----~p~~l~~l~~L~~L~L--s~N~l~~~----ip~~~~~~l~~L~~L~L~~N~  214 (229)
                      .    +...+...++|+.++|  +.|.+...    +.. .+...++|+.|+++.+.
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred             hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCC
Confidence            2    2234566678876555  45666531    222 45577888999887664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.01  E-value=0.00047  Score=50.46  Aligned_cols=94  Identities=16%  Similarity=0.110  Sum_probs=62.4

Q ss_pred             CCCCCCcEEeCCC-CcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc----ccccCCCCccEEeccCCcCCCC----
Q 027045          123 HPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL----PYLNTLTSLTTLILSDNSIEGS----  193 (229)
Q Consensus       123 ~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~----  193 (229)
                      .+.+.|++|++++ +.++...-......+...++|++|++++|.++...-    ..+...++++.+++++|.++..    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568899999987 456542211111246678899999999999874322    2345678899999999988742    


Q ss_pred             CChhhcCCCCCCCEEec--cCCcCCC
Q 027045          194 RTKQGLANLRYLQVLDL--SGNFNIT  217 (229)
Q Consensus       194 ip~~~~~~l~~L~~L~L--~~N~l~~  217 (229)
                      +.. .+...++|+.++|  ++|.+..
T Consensus        94 l~~-~l~~~~~L~~l~L~l~~n~i~~  118 (166)
T d1io0a_          94 LVE-ALQSNTSLIELRIDNQSQPLGN  118 (166)
T ss_dssp             HHH-GGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHH-HHHhCccccEEeeccCCCcCcH
Confidence            112 4667788887665  4566644