Citrus Sinensis ID: 027057

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MNLHIHSILLQAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVAMKMEGADSFSRSSI
cccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEccccccccccHHHHHHHHcccccEEEEEEEEccccccEEEEEEEEEEccccccEEEEEEEEcccccEEEEEEEcccccccEEEcccEEEEEEccccccccccccccccccEEEEEEEcccEEEEEEcccEEEEEEEEccccccccccccccccccc
cccEEEEEcEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHHccccHEEccccccccccEEEEccccccccccHHHHHHHccccccEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEcccccccccccccccEEEEEEEEEcccccEEEEEcccEEEEEEEEEccccEEcccccccccccc
MNLHIHSILLQAFVSEYAvhgndagnGNLLAALAEGGFligleknsdvvAMASYAPLfvnandrwwtpdaivfnsaqlygtpsywvqqffressgatlLNATLLTNSSSSIVASAiswedsenAKSFLRIKVVNLRSNSVNLKVsvdglgpnsiklsgstktqltssnlkdensftepnkvvpsltLLENAAKDmdvvispysftsFDLLRESVAMKMegadsfsrssi
MNLHIHSILLQAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNlkvsvdglgpnsiklsgstktqltssnlkdensftepnkvvPSLTLLENAAKDMDVVISPYSFTSFDLLRESVAMKmegadsfsrssi
MNLHIHSILLQAFVSEYAVHgndagngnllaalaeggfliglEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFREssgatllnatlltnssssivasaisWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVAMKMEGADSFSRSSI
***HIHSILLQAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLN*************************SFLRIKVVNLRSNSVNLKVSV*************************************SLTLLENAAKDMDVVISPYSFTSFDLLR******************
******SILLQAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRES****************
MNLHIHSILLQAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLS*****************FTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVAMKME**********
MNLHIHSILLQAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVAMK************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNLHIHSILLQAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVAMKMEGADSFSRSSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query229 2.2.26 [Sep-21-2011]
Q9SG80678 Alpha-L-arabinofuranosida yes no 0.930 0.314 0.652 1e-73
Q8VZR2674 Alpha-L-arabinofuranosida no no 0.925 0.314 0.595 3e-62
Q2U790629 Probable alpha-N-arabinof yes no 0.742 0.270 0.307 9e-13
Q0CTV2628 Probable alpha-N-arabinof N/A no 0.502 0.183 0.362 3e-12
B8NKA3629 Probable alpha-N-arabinof N/A no 0.742 0.270 0.302 4e-12
P42254628 Alpha-N-arabinofuranosida yes no 0.497 0.181 0.357 7e-11
A2Q7E0628 Probable alpha-N-arabinof yes no 0.497 0.181 0.357 1e-10
Q96X54628 Probable alpha-N-arabinof N/A no 0.497 0.181 0.349 1e-10
Q8NK90628 Alpha-N-arabinofuranosida N/A no 0.497 0.181 0.349 1e-10
P82593 825 Alpha-N-arabinofuranosida N/A no 0.432 0.12 0.367 2e-10
>sp|Q9SG80|ASD1_ARATH Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1 SV=1 Back     alignment and function desciption
 Score =  276 bits (705), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 141/216 (65%), Positives = 173/216 (80%), Gaps = 3/216 (1%)

Query: 11  QAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDA 70
           +AFVSEYAV G DAG G+LLA+LAE  FLIGLEKNSD+V MASYAPLFVN NDR W PDA
Sbjct: 460 KAFVSEYAVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDA 519

Query: 71  IVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRI 130
           IVFNS+ LYGTPSYWVQ+FF ESSGATLL +TL  N S+S+VASAISW++  N K ++RI
Sbjct: 520 IVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGN-STSLVASAISWKN--NGKDYIRI 576

Query: 131 KVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLEN 190
           K VN  +NS N++V V GL PN +++SGS KT LTS+N+ DENSF++P KVVP  +LLE 
Sbjct: 577 KAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPEKVVPHESLLEL 636

Query: 191 AAKDMDVVISPYSFTSFDLLRESVAMKMEGADSFSR 226
           A +DM VV+ P+SF+SFDLL+ES  ++M  +DS S 
Sbjct: 637 AEEDMTVVLPPHSFSSFDLLKESAKIRMPISDSSSH 672
May be involved in the coordinated dissolution of the cell wall matrix during abscission and in the secondary cell wall formation in xylem vessels. Prefers arabinoxylan, but may also use pectic arabinans as substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: -
>sp|Q8VZR2|ASD2_ARATH Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2 SV=1 Back     alignment and function description
>sp|Q2U790|ABFA_ASPOR Probable alpha-N-arabinofuranosidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=abfA PE=3 SV=2 Back     alignment and function description
>sp|Q0CTV2|ABFA_ASPTN Probable alpha-N-arabinofuranosidase A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=abfA PE=3 SV=1 Back     alignment and function description
>sp|B8NKA3|ABFA_ASPFN Probable alpha-N-arabinofuranosidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=abfA PE=3 SV=2 Back     alignment and function description
>sp|P42254|ABFA_ASPNG Alpha-N-arabinofuranosidase A OS=Aspergillus niger GN=abfA PE=1 SV=1 Back     alignment and function description
>sp|A2Q7E0|ABFA_ASPNC Probable alpha-N-arabinofuranosidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=abfA PE=3 SV=1 Back     alignment and function description
>sp|Q96X54|ABFA_ASPAW Probable alpha-N-arabinofuranosidase A OS=Aspergillus awamori GN=abfA PE=1 SV=1 Back     alignment and function description
>sp|Q8NK90|ABFA_ASPKW Alpha-N-arabinofuranosidase A OS=Aspergillus kawachii (strain NBRC 4308) GN=abfA PE=1 SV=2 Back     alignment and function description
>sp|P82593|ABF1_STRCX Alpha-N-arabinofuranosidase 1 OS=Streptomyces chartreusis PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
255565362 678 Alpha-N-arabinofuranosidase 1 precursor, 0.956 0.323 0.684 1e-81
356504623 676 PREDICTED: alpha-L-arabinofuranosidase 1 0.956 0.323 0.684 6e-80
119507455 675 alpha-Arabinosidase1 [Pyrus communis] 0.956 0.324 0.704 4e-79
33151175 675 alpha-L-arabinofuranosidase [Malus x dom 0.956 0.324 0.704 6e-79
356571858 676 PREDICTED: alpha-L-arabinofuranosidase 1 0.956 0.323 0.684 9e-79
157313302 677 alpha-L-arabinofuranosidase protein [Pru 0.956 0.323 0.698 2e-78
224086707 670 predicted protein [Populus trichocarpa] 0.947 0.323 0.707 2e-78
222093461 368 alpha-L-arabinofuranosidase [Prunus sali 0.956 0.595 0.693 1e-77
357509145 672 Alpha-L-arabinofuranosidase [Medicago tr 0.908 0.309 0.682 3e-77
116739148 677 alpha-L-arabinofuranosidase [Prunus pers 0.956 0.323 0.684 4e-77
>gi|255565362|ref|XP_002523672.1| Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] gi|223537072|gb|EEF38707.1| Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/219 (68%), Positives = 188/219 (85%)

Query: 11  QAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDA 70
           +AFVSEYAV G DAG G+LLA LAE  FLIGLEKNSD+V MASYAPLFV++N+R W PDA
Sbjct: 460 KAFVSEYAVTGKDAGTGSLLAGLAEAAFLIGLEKNSDIVEMASYAPLFVHSNNRRWNPDA 519

Query: 71  IVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRI 130
           IVFNS+QLYGTPSYWVQ+FF +SSGATL+N TL TNSS+S++ASAI W++S ++K++L+I
Sbjct: 520 IVFNSSQLYGTPSYWVQRFFMDSSGATLINTTLQTNSSTSLIASAIIWQNSVDSKNYLKI 579

Query: 131 KVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLEN 190
           KVVN  S++VNLK+S+DGLG NSI+LSGSTK  LTS+N+ DENSF +P KV+P+L++L++
Sbjct: 580 KVVNFGSSTVNLKISIDGLGLNSIQLSGSTKMLLTSANVMDENSFNDPKKVLPTLSMLDH 639

Query: 191 AAKDMDVVISPYSFTSFDLLRESVAMKMEGADSFSRSSI 229
           A KDMDVV+ PYS TS+DLL ES  +K+ G DS SRSSI
Sbjct: 640 AGKDMDVVLPPYSLTSYDLLTESSNIKITGTDSLSRSSI 678

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356504623|ref|XP_003521095.1| PREDICTED: alpha-L-arabinofuranosidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|119507455|dbj|BAF42035.1| alpha-Arabinosidase1 [Pyrus communis] Back     alignment and taxonomy information
>gi|33151175|gb|AAP97437.1| alpha-L-arabinofuranosidase [Malus x domestica] Back     alignment and taxonomy information
>gi|356571858|ref|XP_003554088.1| PREDICTED: alpha-L-arabinofuranosidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|157313302|gb|ABV32544.1| alpha-L-arabinofuranosidase protein [Prunus persica] Back     alignment and taxonomy information
>gi|224086707|ref|XP_002307940.1| predicted protein [Populus trichocarpa] gi|222853916|gb|EEE91463.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|222093461|gb|ACM43507.1| alpha-L-arabinofuranosidase [Prunus salicina] Back     alignment and taxonomy information
>gi|357509145|ref|XP_003624861.1| Alpha-L-arabinofuranosidase [Medicago truncatula] gi|296882314|gb|ADH83380.1| alpha-L-arabinofuranosidase [Medicago truncatula] gi|355499876|gb|AES81079.1| Alpha-L-arabinofuranosidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|116739148|gb|ABF22680.3| alpha-L-arabinofuranosidase [Prunus persica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
TAIR|locus:2103172678 ASD1 "alpha-L-arabinofuranosid 0.925 0.312 0.497 1.5e-49
TAIR|locus:2180652674 ASD2 "alpha-L-arabinofuranosid 0.925 0.314 0.45 4e-41
UNIPROTKB|Q0CTV2628 abfA "Probable alpha-N-arabino 0.554 0.202 0.319 3.1e-07
UNIPROTKB|B8NKA3629 abfA "Probable alpha-N-arabino 0.554 0.201 0.305 1.4e-05
UNIPROTKB|Q2U790629 abfA "Probable alpha-N-arabino 0.554 0.201 0.305 1.4e-05
UNIPROTKB|Q8NK90628 abfA "Alpha-N-arabinofuranosid 0.432 0.157 0.305 9.5e-05
UNIPROTKB|Q96X54628 abfA "Probable alpha-N-arabino 0.432 0.157 0.305 9.5e-05
UNIPROTKB|A2Q7E0628 abfA "Probable alpha-N-arabino 0.554 0.202 0.291 0.00018
TAIR|locus:2103172 ASD1 "alpha-L-arabinofuranosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 107/215 (49%), Positives = 134/215 (62%)

Query:    11 QAFVSEYAVHXXXXXXXXXXXXXXXXXXXXXXEKNSDVVAMASYAPLFVNANDRWWTPDA 70
             +AFVSEYAV                       EKNSD+V MASYAPLFVN NDR W PDA
Sbjct:   460 KAFVSEYAVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDA 519

Query:    71 IVFNSAQLYGTPSYWVQQFFREXXXXXXXXXXXXXXXXXXXXXXXXXWEDSENAKSFLRI 130
             IVFNS+ LYGTPSYWVQ+FF E                         W++  N K ++RI
Sbjct:   520 IVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGNSTSLVASAIS-WKN--NGKDYIRI 576

Query:   131 KVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLEN 190
             K VN  +NS N++V V GL PN +++SGS KT LTS+N+ DENSF++P KVVP  +LLE 
Sbjct:   577 KAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPEKVVPHESLLEL 636

Query:   191 AAKDMDVVISPYSFTSFDLLRESVAMKMEGADSFS 225
             A +DM VV+ P+SF+SFDLL+ES  ++M  +DS S
Sbjct:   637 AEEDMTVVLPPHSFSSFDLLKESAKIRMPISDSSS 671
GO:0005576 "extracellular region" evidence=ISM
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0046373 "L-arabinose metabolic process" evidence=IEA
GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=IEA;IDA
GO:0009044 "xylan 1,4-beta-xylosidase activity" evidence=IDA
GO:0045493 "xylan catabolic process" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2180652 ASD2 "alpha-L-arabinofuranosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0CTV2 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus terreus NIH2624 (taxid:341663)] Back     alignment and assigned GO terms
UNIPROTKB|B8NKA3 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus flavus NRRL3357 (taxid:332952)] Back     alignment and assigned GO terms
UNIPROTKB|Q2U790 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus oryzae RIB40 (taxid:510516)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NK90 abfA "Alpha-N-arabinofuranosidase A" [Aspergillus kawachii IFO 4308 (taxid:1033177)] Back     alignment and assigned GO terms
UNIPROTKB|Q96X54 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus awamori (taxid:105351)] Back     alignment and assigned GO terms
UNIPROTKB|A2Q7E0 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus niger CBS 513.88 (taxid:425011)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.550.737
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
smart00813189 smart00813, Alpha-L-AF_C, Alpha-L-arabinofuranosid 8e-54
pfam06964192 pfam06964, Alpha-L-AF_C, Alpha-L-arabinofuranosida 7e-47
COG3534501 COG3534, AbfA, Alpha-L-arabinofuranosidase [Carboh 1e-08
>gnl|CDD|214830 smart00813, Alpha-L-AF_C, Alpha-L-arabinofuranosidase C-terminus Back     alignment and domain information 
 Score =  170 bits (434), Expect = 8e-54
 Identities = 66/199 (33%), Positives = 93/199 (46%), Gaps = 20/199 (10%)

Query: 15  SEYAVHGN-----DAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPD 69
            E+ V  +           L  ALAE  FL GLE+NSD V MASYA L    N     PD
Sbjct: 1   DEWNVWYDSEPGLLEQQYTLRDALAEAAFLNGLERNSDRVKMASYAQLVNVIN-----PD 55

Query: 70  AIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTN--SSSSIVASAISWEDSENA-KS 126
            + FN  Q + T +Y+V Q F +  G T+L  T+ +           A+    S++    
Sbjct: 56  MLTFNGGQAWRTTTYYVFQLFSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDEDGG 115

Query: 127 FLRIKVVNLRSN-SVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSL 185
            L +KVVN     +V + +S+ GL     K   +  T LTS +L   N+F +PNKVVP  
Sbjct: 116 SLTVKVVNRSPEEAVTVTISLRGL-----KAKSAEGTVLTSPDLNAANTFEDPNKVVPVT 170

Query: 186 TLLENAAKD-MDVVISPYS 203
           + L       + V + P+S
Sbjct: 171 STLAAVEGGTLTVTLPPHS 189

This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. Length = 189
>gnl|CDD|219243 pfam06964, Alpha-L-AF_C, Alpha-L-arabinofuranosidase C-terminus Back     alignment and domain information
>gnl|CDD|226064 COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 229
PF06964177 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-termin 100.0
smart00813189 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminu 100.0
COG3534501 AbfA Alpha-L-arabinofuranosidase [Carbohydrate tra 100.0
PF02055496 Glyco_hydro_30: O-Glycosyl hydrolase family 30; In 97.38
PF0280695 Alpha-amylase_C: Alpha amylase, C-terminal all-bet 91.64
PF01229486 Glyco_hydro_39: Glycosyl hydrolases family 39; Int 91.49
KOG2566518 consensus Beta-glucocerebrosidase [Carbohydrate tr 89.96
COG5520433 O-Glycosyl hydrolase [Cell envelope biogenesis, ou 81.79
PLN02808386 alpha-galactosidase 80.21
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3 Back     alignment and domain information 
Probab=100.00  E-value=6.4e-50  Score=331.18  Aligned_cols=172  Identities=40%  Similarity=0.629  Sum_probs=146.1

Q ss_pred             eccccccCC-----CCCCcHHHHHHHHHHHHHHHhcCCeEeeeccceeecccCCCCCCCceEEecCCeeecCccHHHHHH
Q 027057           15 SEYAVHGND-----AGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQF   89 (229)
Q Consensus        15 gEya~~~~~-----~~~~~l~~AL~~A~~L~~leRnsD~V~mA~~A~l~~~~~~~~W~p~lI~~~~~~~~~tpsYyv~kl   89 (229)
                      ||||+|+..     ...++|++||++|+||++||||||+|+||||||||++++..||+|++|.|+++++|+||+||||||
T Consensus         1 dE~~~~~~~~~~~~~~~~~l~~AL~~A~~l~~~eRnsD~V~ma~~A~l~~~~~~~~w~~~li~~~~~~~~~tpsY~v~~l   80 (177)
T PF06964_consen    1 DEWNVWYEEAPPGLEQRYTLRDALAEAAFLNGFERNSDVVKMACYAPLVNNIGDTQWTPDLITFDGDQVFGTPSYYVQKL   80 (177)
T ss_dssp             EEEEE-SCSSSSSS----BHHHHHHHHHHHHHHHHTTTTEEEEEEE-SBSTTS------SEEEETTSEEEESHHHHHHHH
T ss_pred             CCcCcccCcCCCcccccCCHHHHHHHHHHHHHHHhCCCEEeEEccchhhccccccccccceEEcCCCCEEECchHHHHHH
Confidence            899998742     126899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCeEEeEEEecCCCCceEEEEEEecccCCCcceEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCC
Q 027057           90 FRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNL  169 (229)
Q Consensus        90 ~s~~~g~~~L~~~v~~~~~~~l~~sA~~~~~~~d~~~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~Lt~~~~  169 (229)
                      |++|.|+++|         +.|+++|++++++    ++++|||||+++++++++|+|+|++..    ..+++++|+|+++
T Consensus        81 f~~~~g~~~l---------~~l~~~As~d~~~----~~l~v~vVN~~~~~~~v~l~l~g~~~~----~~a~~~~Ltg~~~  143 (177)
T PF06964_consen   81 FSNHRGDTVL---------PPLDVSASRDEDG----GELYVKVVNRSSEPQTVTLNLQGFSPA----ATATVTTLTGDDP  143 (177)
T ss_dssp             HHHCTTSEEE---------ESEEEEEEEETTT----TEEEEEEEE-SSSBEEEEEEETTSTS-----EEEEEEEEETSST
T ss_pred             HHhcCCCeEe---------ccEEEEEEEECCC----CEEEEEEEECCCCCEEEEEEEcCCCCC----ceEEEEEEECCCc
Confidence            9999999999         7999999986532    469999999997799999999998863    7899999999999


Q ss_pred             CCCCCCCCCceEeeeeeeEEeeCCeEEEEECCce
Q 027057          170 KDENSFTEPNKVVPSLTLLENAAKDMDVVISPYS  203 (229)
Q Consensus       170 ~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S  203 (229)
                      .++||+++|++|+|+++.+...++.++++|||||
T Consensus       144 ~a~Nt~~~p~~V~p~~~~~~~~~~~~~~~lp~~S  177 (177)
T PF06964_consen  144 DAENTFENPENVVPVTSTVSAEGGTFTYTLPPYS  177 (177)
T ss_dssp             T-B-CSSSTTSSEEEEEEEEEETTEEEEEE-SSE
T ss_pred             ccccCCCCCCEEEEEEeeEEecCCEEEEEeCCCC
Confidence            9999999999999999999988999999999998

2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus Back     alignment and domain information
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02808 alpha-galactosidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
2vrq_A496 Alpha-L-arabinofuranosidase; hydrolase, glycosidas 4e-34
3ug3_A504 Alpha-L-arabinofuranosidase; TIM barrel, hydrolase 7e-33
1qw9_A502 Arabinosidase, alpha-L-arabinofuranosidase; hydrol 1e-28
2y2w_A574 Arabinofuranosidase; hydrolase, arabinoxylan, glyc 4e-28
2c7f_A513 Alpha-L-arabinofuranosidase; glycosidase, xylan, a 3e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A Length = 496 Back     alignment and structure
 Score =  126 bits (317), Expect = 4e-34
 Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 13/193 (6%)

Query: 20  HGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLY 79
            G      ++  AL  G  L    ++ D V MA+ A L             I+    ++ 
Sbjct: 311 PGFLYQQNSIRDALVAGATLHIFHRHCDRVRMANIAQLV------NVLQSVILTEGERML 364

Query: 80  GTPSYWVQQFFRESSGATLLNATLLTNSSSSI-VASAISWEDSENAKSFLRIKVVNLR-S 137
            TP+Y V   F+    A LL+       +        +S   S  A   + I + NL   
Sbjct: 365 LTPTYHVFNMFKVHQDAELLDTWESVERTGPEGELPKVSVSASRAADGKIHISLCNLDFE 424

Query: 138 NSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVP-SLTLLENAAKDMD 196
              ++ + + GL         +T T LTS  +   N+F EP +V P      +     ++
Sbjct: 425 TGASVDIELRGLNGGVS----ATGTTLTSGRIDGHNTFDEPERVKPAPFRDFKLEGGHLN 480

Query: 197 VVISPYSFTSFDL 209
             + P S T  +L
Sbjct: 481 ASLPPMSVTVLEL 493
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A Length = 504 Back     alignment and structure
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A Length = 502 Back     alignment and structure
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum} Length = 574 Back     alignment and structure
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A Length = 513 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
3ug3_A504 Alpha-L-arabinofuranosidase; TIM barrel, hydrolase 100.0
2vrq_A496 Alpha-L-arabinofuranosidase; hydrolase, glycosidas 100.0
2y2w_A574 Arabinofuranosidase; hydrolase, arabinoxylan, glyc 100.0
1qw9_A502 Arabinosidase, alpha-L-arabinofuranosidase; hydrol 100.0
2c7f_A513 Alpha-L-arabinofuranosidase; glycosidase, xylan, a 100.0
3ii1_A535 Cellulase; CELM2, glucanase-xyanase, glucanase, xy 99.95
2yih_A524 CEL44C, xyloglucanase; hydrolase, GH44, endo-gluca 99.91
2e4t_A519 Endoglucanase, xyloglucanase; TIM barrel, TIM-like 99.88
3ik2_A517 Endoglucanase A; TIM-like barrel, hydrolase; 2.20A 99.76
3vny_A488 Beta-glucuronidase; TIM barrel, greek-KEY, glycosi 99.7
1w91_A503 Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 99.3
1uhv_A500 Beta-xylosidase; family 39 glycoside hydrolase, xy 98.66
2y24_A383 Xylanase; hydrolase, GH5 family, aldotetraouronic 98.44
2nt0_A497 Glucosylceramidase; cerezyme, glucocerebrosidase, 98.41
3kl0_A401 Glucuronoxylanase XYNC; alpha beta barrel, (beta/a 98.19
3clw_A507 Conserved exported protein; structural genomics, u 98.11
4ekj_A500 Beta-xylosidase; TIM-barrel fold, hemicellulase, h 98.01
2wnw_A447 Activated by transcription factor SSRB; hydrolase, 97.78
4aw7_A 591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 97.1
3zr5_A 656 Galactocerebrosidase; hydrolase, GALC, glycosyl hy 97.06
3hg3_A404 Alpha-galactosidase A; glycoprotein, carbohydrate- 85.1
3cc1_A433 BH1870 protein, putative alpha-N-acetylgalactosami 84.41
4do4_A400 Alpha-N-acetylgalactosaminidase; pharmacological c 82.79
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A Back     alignment and structure
Probab=100.00  E-value=3.2e-42  Score=323.68  Aligned_cols=189  Identities=24%  Similarity=0.289  Sum_probs=164.6

Q ss_pred             CCCccEEEeccccccCC-CC----CCcHHHHHHHHHHHHHHHhcCCeEeeeccceeecccCCCCCCCceEEecCCeeecC
Q 027057            7 SILLQAFVSEYAVHGND-AG----NGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGT   81 (229)
Q Consensus         7 r~~~ki~vgEya~~~~~-~~----~~~l~~AL~~A~~L~~leRnsD~V~mA~~A~l~~~~~~~~W~p~lI~~~~~~~~~t   81 (229)
                      |++++|++||||+|+.. ++    +++|+|||++|++|++|+||||+|+|||||||+|++++       |.++++++|+|
T Consensus       292 ~~~i~i~vdEwn~w~~~~~~~l~~~~t~~dAl~~A~~L~~~~r~~D~V~mA~~A~lvNv~~~-------i~~~~~~~~~t  364 (504)
T 3ug3_A          292 KRGVKIALDEWNVWYRVSDNKLEEPYDLKDGIFACGVLVLLQKMSDIVPLANLAQLVNALGA-------IHTEKDGLILT  364 (504)
T ss_dssp             HHTCEEEEEEEEECCSCCSSSCCCCCCHHHHHHHHHHHHHHHHHTTTCCEEEESCSBSTTCS-------EEEETTEEEEC
T ss_pred             CCCCceEeeccccccccCCccccccCCHHHHHHHHHHHHHHHhccCceeEEehhhhhcccce-------EEecCCCcEec
Confidence            35689999999999742 22    48999999999999999999999999999999998763       45555559999


Q ss_pred             ccHHHHHHHhhcCCCeEEeEEEecCCC------------------CceEEEEEEecccCCCcceEEEEEEeCC-CCcEEE
Q 027057           82 PSYWVQQFFRESSGATLLNATLLTNSS------------------SSIVASAISWEDSENAKSFLRIKVVNLR-SNSVNL  142 (229)
Q Consensus        82 psYyv~kl~s~~~g~~~L~~~v~~~~~------------------~~l~~sA~~~~~~~d~~~~l~vkvVN~~-~~~~~v  142 (229)
                      |+||||+||++|.|+++|++.++++++                  |.|+++|+.+++    ++.++||+||++ ++++++
T Consensus       365 pty~v~~l~~~~~g~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~p~l~~sA~~~~~----~g~l~v~~vN~~~~~~~~v  440 (504)
T 3ug3_A          365 PVYKAFELIVNHSGEKLVKTHVESETYNIEGVMFINKMPFSVENAPFLDAAASISED----GKKLFIAVVNYRKEDALKV  440 (504)
T ss_dssp             HHHHHHHHHHHSCCSEEEEEEEECCEEEEEEEETTTTEEEEEEEEESEEEEEEECTT----SCEEEEEEEECCSSCCEEE
T ss_pred             cccHHHHHHHhhCCCeEEeEEEecCccccccccccccccccCCCCceEEEEEEEeCC----CCEEEEEEEECCCCCCEEE
Confidence            999999999999999999999998643                  458899987532    247999999999 567999


Q ss_pred             EEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceEeeeeeeEEeeCCeEEEEECCceEEEEEEeec
Q 027057          143 KVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRE  212 (229)
Q Consensus       143 ~i~l~g~~~~~~~~~~~~~~~Lt~~~~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~tvl~l~~~  212 (229)
                      +|+|+|++.     +.+++++|+++++.+.|||++|++|+|++ .+...++.++++|||+||+||+++++
T Consensus       441 ~i~l~g~~~-----~~~~~~~Lt~~~~~a~Nt~~~P~~V~p~~-~~~~~~~~~~~~lp~~S~~vl~l~~~  504 (504)
T 3ug3_A          441 PIRVEGLGQ-----KKATVYTLTGPDVNARNTMENPNVVDITS-ETITVDTEFEHTFKPFSCSVIEVELE  504 (504)
T ss_dssp             EEEETTCCS-----EEEEEEEEECSSTTCCCCSSCTTSSEEEE-EEEEECSEEEEEECTTEEEEEEEEC-
T ss_pred             EEEecCCcc-----ceEEEEEEECCCcccccCCCCCCEEEeee-eeEecCCEEEEEECCCEEEEEEEEeC
Confidence            999999873     67999999999999999999999999999 77778899999999999999999875
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A Back     alignment and structure
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum} Back     alignment and structure
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A Back     alignment and structure
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A Back     alignment and structure
>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A Back     alignment and structure
>2yih_A CEL44C, xyloglucanase; hydrolase, GH44, endo-glucanase, carbohydrate-binding protei; HET: BGC; 1.70A {Paenibacillus polymyxa} PDB: 2yjq_A* 2ykk_A* 3zq9_A* Back     alignment and structure
>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel, composite domain of glycosyl HY families 5, 30, 39 and 51, hydrolase; 0.96A {Clostridium thermocellum} PDB: 2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A* Back     alignment and structure
>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium acetobutylicum} Back     alignment and structure
>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A* Back     alignment and structure
>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A* Back     alignment and structure
>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A Back     alignment and structure
>2y24_A Xylanase; hydrolase, GH5 family, aldotetraouronic acid; HET: XYP GCV PG4 PGE; 1.39A {Erwinia chrysanthemi} PDB: 1nof_A* Back     alignment and structure
>2nt0_A Glucosylceramidase; cerezyme, glucocerebrosidase, glucosylceramide, hydrolysis, disease, hydrolase; HET: NAG; 1.79A {Homo sapiens} SCOP: b.71.1.2 c.1.8.3 PDB: 1y7v_A* 2f61_A* 2j25_A* 2nsx_A* 1ogs_A* 2nt1_A* 3gxd_A* 3gxf_A* 3gxi_A* 3gxm_A* 3rik_A* 3ril_A* 2v3f_A* 2v3e_A* 2v3d_A* 2vt0_A* 2wcg_A* 2xwd_A* 2xwe_A* 2wkl_A* ... Back     alignment and structure
>3kl0_A Glucuronoxylanase XYNC; alpha beta barrel, (beta/alpha)8 barrel (beta/alpha)8 + beta motif family, hydrolase; HET: TAR HIS; 1.64A {Bacillus subtilis} PDB: 3gtn_A* 3kl3_A* 3kl5_A* Back     alignment and structure
>3clw_A Conserved exported protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Bacteroides fragilis} Back     alignment and structure
>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides} Back     alignment and structure
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp} Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Back     alignment and structure
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A* Back     alignment and structure
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A* Back     alignment and structure
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} Back     alignment and structure
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 229
d1qw9a2367 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, ca 1e-11
d2c7fa1131 b.71.1.2 (A:2-16,A:387-502) Alpha-l-arabinofuranos 5e-10
d1qw9a1130 b.71.1.2 (A:5-17,A:385-501) Alpha-l-arabinofuranos 7e-05
>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 367 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alpha-L-arabinofuranosidase, catalytic domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 8/64 (12%)

Query: 28  NLLAALAEGGFLIGLEKNSDVVAMASYAPLF-VNANDRWWTPDAIVFNSAQLYGTPSYWV 86
           N   AL  G  LI L K++D V +A  A L  V A       +   +          Y+ 
Sbjct: 306 NFEDALLVGCMLITLMKHADRVKIACLAQLVNVIAPIM-TEKNGPAW------KQTIYYP 358

Query: 87  QQFF 90
               
Sbjct: 359 FMHA 362
>d2c7fa1 b.71.1.2 (A:2-16,A:387-502) Alpha-l-arabinofuranosidase {Clostridium thermocellum [TaxId: 1515]} Length = 131 Back     information, alignment and structure
>d1qw9a1 b.71.1.2 (A:5-17,A:385-501) Alpha-l-arabinofuranosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 130 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
d1qw9a1130 Alpha-l-arabinofuranosidase {Bacillus stearothermo 99.9
d2c7fa1131 Alpha-l-arabinofuranosidase {Clostridium thermocel 99.89
d1qw9a2367 Alpha-L-arabinofuranosidase, catalytic domain {Bac 99.8
d1nofa1106 Glycosyl hydrolase family 5 xylanase {Erwinia chry 97.5
d1ji1a283 Maltogenic amylase {Thermoactinomyces vulgaris, TV 96.0
d1j0ha283 Neopullulanase {Bacillus stearothermophilus [TaxId 94.28
d1wzla283 Maltogenic amylase {Thermoactinomyces vulgaris, TV 94.21
d1ea9c280 Maltogenic amylase {Bacillus sp., cyclomaltodextri 94.0
d1uasa189 Melibiase {Rice (Oryza sativa) [TaxId: 4530]} 93.32
d1ktba195 Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} 91.59
d1uhva2346 Beta-D-xylosidase, catalytic domain {Thermoanaerob 91.57
d1m7xa2106 1,4-alpha-glucan branching enzyme {Escherichia col 88.28
d1szna1103 Melibiase {Trichoderma reesei [TaxId: 51453]} 87.37
d1r46a198 Melibiase {Human (Homo sapiens) [TaxId: 9606]} 85.21
>d1qw9a1 b.71.1.2 (A:5-17,A:385-501) Alpha-l-arabinofuranosidase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: All beta proteins
fold: Glycosyl hydrolase domain
superfamily: Glycosyl hydrolase domain
family: Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
domain: Alpha-l-arabinofuranosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.90  E-value=1e-23  Score=163.83  Aligned_cols=109  Identities=15%  Similarity=0.122  Sum_probs=97.1

Q ss_pred             CCeEEeEEEecCCC--------CceEEEEEEecccCCCcceEEEEEEeCC-CCcEEEEEEEccCCCCcccccceEEEEEe
Q 027057           95 GATLLNATLLTNSS--------SSIVASAISWEDSENAKSFLRIKVVNLR-SNSVNLKVSVDGLGPNSIKLSGSTKTQLT  165 (229)
Q Consensus        95 g~~~L~~~v~~~~~--------~~l~~sA~~~~~~~d~~~~l~vkvVN~~-~~~~~v~i~l~g~~~~~~~~~~~~~~~Lt  165 (229)
                      +|++|.+.++||+|        |.||++|++++++    ++++|++|||+ +++++++|+++|++..    +.+++++|+
T Consensus        13 ~G~~L~~~v~sp~y~~~~~~~vp~lDasAt~d~~~----~~l~v~vVNr~~~e~~~v~i~l~g~~~~----~~~~~~~L~   84 (130)
T d1qw9a1          13 AGVALHPVISSPKYDSKDFTDVPYLESIAVYNEEK----EEVTIFAVNRDMEDALLLECDVRSFEDY----RVIEHIVLE   84 (130)
T ss_dssp             ESEEECCEEECCEECCSSCSSEESEEEEEEEETTT----TEEEEEEEECCSSCCEEEEEECTTSCSC----EEEEEEEEC
T ss_pred             ceEEeeeEecCCceecCCCCCCceEEEEEEEeCCC----CEEEEEEEECCCCcCeEEEEEccCCCcc----ceEEEEEEe
Confidence            69999999999976        4699999986532    57999999999 7899999999998863    678899999


Q ss_pred             cCCCCCCCCCCCCceEeeeeeeEEeeCCeEEEEECCceEEEEEEee
Q 027057          166 SSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLR  211 (229)
Q Consensus       166 ~~~~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~tvl~l~~  211 (229)
                      |++++++|||++|+.|.|+...+...++.++++|||+||++|||++
T Consensus        85 ~~d~~a~NT~~~p~vv~~~~~~~~~~~~~l~~~lPp~S~tvirLkk  130 (130)
T d1qw9a1          85 HDNVKQTNSAQSSPVVPHRNGDAQLSDRKVSATLPKLSWNVIRLGK  130 (130)
T ss_dssp             CSCTTCBCCSSCCCCCCBSCCCCEEETTEEEEEECSSEEEEEEEEC
T ss_pred             CCCccccccCCCCceecCcCcceEEeCCEEEEEECCcEEEEEEEcC
Confidence            9999999999999988777777888999999999999999999985
>d2c7fa1 b.71.1.2 (A:2-16,A:387-502) Alpha-l-arabinofuranosidase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1nofa1 b.71.1.2 (A:31-43,A:321-413) Glycosyl hydrolase family 5 xylanase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ji1a2 b.71.1.1 (A:555-637) Maltogenic amylase {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} Back     information, alignment and structure
>d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1wzla2 b.71.1.1 (A:503-585) Maltogenic amylase {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Back     information, alignment and structure
>d1ea9c2 b.71.1.1 (C:504-583) Maltogenic amylase {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} Back     information, alignment and structure
>d1uasa1 b.71.1.1 (A:274-362) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1ktba1 b.71.1.1 (A:294-388) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]} Back     information, alignment and structure
>d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1szna1 b.71.1.1 (A:315-417) Melibiase {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1r46a1 b.71.1.1 (A:324-421) Melibiase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure