Citrus Sinensis ID: 027081

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MASAAAAASSAPTIWLTGQGLGGRSTRLPFHWRNKKMEQRKTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC
cHHHcccccccccHHHcccccccccccccccccccHHHHHcccccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccccEEEEccccccccccccccccccccc
cccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHcccccHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcEcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHccccEEEEEEEEccEEEEEEEEccccHccccccccccccccEccccHHHHcHccHccc
masaaaaassaptiwltgqglggrstrlpfhwrnkkmeqrktggrisakfdlkpppyplnalephmskdtlefhwgkHHRAYVDNLNkqivgtelgdgkslEDVVIASynkgdllpafNNAAQAWnhdffwesmkpggggkpsgelLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANnradvanavnplpsekdksllvvktpnavnplvwdysvsssltc
MASAAAaassaptiwltgqglggrstrlpfhwrnkkmeqrktggrisakfdlkppPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNplpsekdksllvvktpnavnplvwdysvsssltc
MasaaaaassaPTIWLTGQGLGGRSTRLPFHWRNKKMEQRKTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWesmkpggggkpsgellgLIERDFGSfekfleefkaaaaTQFGSGWAWLVYKannradvanavnPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC
************TIWLTGQGLGGRSTRLPFHW************************************DTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESM*********GELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAV*********SLLVVKTPNAVNPLVWDYS*******
********SSAP*IW*********************************KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGG**KPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC
***********PTIWLTGQGLGGRSTRLPFHWRNKKMEQRKTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDY********
*************************TRLP****************ISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASAAAAASSAPTIWLTGQGLGGRSTRLPFHWRNKKMEQRKTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query228 2.2.26 [Sep-21-2011]
Q9LU64305 Superoxide dismutase [Fe] yes no 0.815 0.609 0.703 2e-80
P28759248 Superoxide dismutase [Fe] no no 0.771 0.709 0.735 7e-67
P22302202 Superoxide dismutase [Fe] N/A no 0.684 0.772 0.687 3e-64
P21276212 Superoxide dismutase [Fe] no no 0.671 0.721 0.686 4e-57
Q9FMX0263 Superoxide dismutase [Fe] no no 0.697 0.604 0.548 3e-51
Q5VRL3391 Superoxide dismutase [Fe] yes no 0.745 0.434 0.488 1e-43
Q5VSB7255 Superoxide dismutase [Fe] no no 0.732 0.654 0.460 9e-42
Q8YSZ1200 Superoxide dismutase [Fe] yes no 0.649 0.74 0.523 1e-40
P77968199 Superoxide dismutase [Fe] N/A no 0.627 0.718 0.518 2e-38
P50061199 Superoxide dismutase [Fe] N/A no 0.653 0.748 0.502 8e-38
>sp|Q9LU64|SODF2_ARATH Superoxide dismutase [Fe] 2, chloroplastic OS=Arabidopsis thaliana GN=FSD2 PE=1 SV=1 Back     alignment and function desciption
 Score =  298 bits (764), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/199 (70%), Positives = 170/199 (85%), Gaps = 13/199 (6%)

Query: 34  NKKMEQRKTGGR-----------ISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAY 82
           N++M+ ++ G R           I+A F+LKPPPYPL+ALEPHMS++TL++HWGKHH+ Y
Sbjct: 26  NRRMQWKRNGKRRLGTKVAVSGVITAGFELKPPPYPLDALEPHMSRETLDYHWGKHHKTY 85

Query: 83  VDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKP 142
           V+NLNKQI+GT+L D  SLE+VV+ SYNKG++LPAFNNAAQAWNH+FFWES++PGGGGKP
Sbjct: 86  VENLNKQILGTDL-DALSLEEVVLLSYNKGNMLPAFNNAAQAWNHEFFWESIQPGGGGKP 144

Query: 143 SGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDK 202
           +GELL LIERDFGSFE+FLE FK+AAA+ FGSGW WL YKA NR DVANAVNPLP E+DK
Sbjct: 145 TGELLRLIERDFGSFEEFLERFKSAAASNFGSGWTWLAYKA-NRLDVANAVNPLPKEEDK 203

Query: 203 SLLVVKTPNAVNPLVWDYS 221
            L++VKTPNAVNPLVWDYS
Sbjct: 204 KLVIVKTPNAVNPLVWDYS 222
Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems (By similarity). Plays important role in chloroplast development, particularly in the maintenance of thylakoids membranes. Seems to act as a heterodimer with FSD3.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 5EC: .EC: 1EC: .EC: 1
>sp|P28759|SODF_SOYBN Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1 Back     alignment and function description
>sp|P22302|SODF_NICPL Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1 Back     alignment and function description
>sp|P21276|SODF1_ARATH Superoxide dismutase [Fe] 1, chloroplastic OS=Arabidopsis thaliana GN=FSD1 PE=1 SV=4 Back     alignment and function description
>sp|Q9FMX0|SODF3_ARATH Superoxide dismutase [Fe] 3, chloroplastic OS=Arabidopsis thaliana GN=FSD3 PE=1 SV=1 Back     alignment and function description
>sp|Q5VRL3|SODF1_ORYSJ Superoxide dismutase [Fe] 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0115400 PE=2 SV=1 Back     alignment and function description
>sp|Q5VSB7|SODF2_ORYSJ Superoxide dismutase [Fe] 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0143000 PE=2 SV=1 Back     alignment and function description
>sp|Q8YSZ1|SODF_NOSS1 Superoxide dismutase [Fe] OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=sodB PE=3 SV=3 Back     alignment and function description
>sp|P77968|SODF_SYNY3 Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sodB PE=1 SV=3 Back     alignment and function description
>sp|P50061|SODF_PLEBO Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
380085077305 Fe superoxide dismutase [Jatropha curcas 0.868 0.649 0.767 6e-84
374307307309 iron superoxide dismutase, partial [Litc 0.951 0.702 0.737 1e-81
195548074163 iron superoxide dismutase [Citrus maxima 0.657 0.920 0.993 3e-81
347597326282 Fe-superoxide dismutase [Phytolacca acin 0.942 0.762 0.683 2e-80
255539971305 superoxide dismutase [fe], putative [Ric 0.951 0.711 0.728 5e-79
15241373305 Fe superoxide dismutase 2 [Arabidopsis t 0.815 0.609 0.703 9e-79
312837926278 Fe superoxide dismutase 2 [Brassica rapa 0.859 0.705 0.702 1e-78
225454956306 PREDICTED: superoxide dismutase [Fe], ch 0.925 0.689 0.674 2e-78
356499596313 PREDICTED: superoxide dismutase [Fe], ch 0.947 0.690 0.656 2e-78
387169513264 hypothetical protein 11M19.17 [Arabidops 0.780 0.674 0.761 3e-78
>gi|380085077|gb|AFD34189.1| Fe superoxide dismutase [Jatropha curcas] Back     alignment and taxonomy information
 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 155/202 (76%), Positives = 175/202 (86%), Gaps = 4/202 (1%)

Query: 22  GGRS-TRLPFHWRNKKMEQRKTG-GRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHH 79
           GG S T   F WR ++  +R+TG   ++AKF+LKPPPYPLNALEPHMSKDTLE+HWGKHH
Sbjct: 20  GGLSRTTSAFKWRKERHVRRQTGPAIVTAKFELKPPPYPLNALEPHMSKDTLEYHWGKHH 79

Query: 80  RAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGG 139
           R+YVDNLNKQIVGTEL D   LEDVVI +YNKGD+LPAFNNAAQAWNH+FFW  MKPGGG
Sbjct: 80  RSYVDNLNKQIVGTEL-DSLPLEDVVIVTYNKGDVLPAFNNAAQAWNHEFFWGCMKPGGG 138

Query: 140 GKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSE 199
           GK SGELL LIERDFGSF+KF+EEF++AAATQFGSGWAWL YKA NR +V NAVNP PSE
Sbjct: 139 GKRSGELLQLIERDFGSFKKFVEEFRSAAATQFGSGWAWLAYKA-NRLNVENAVNPRPSE 197

Query: 200 KDKSLLVVKTPNAVNPLVWDYS 221
           +DK L+VVK+PNAVNPLVWDYS
Sbjct: 198 EDKKLVVVKSPNAVNPLVWDYS 219

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|374307307|gb|AEY78486.2| iron superoxide dismutase, partial [Litchi chinensis] Back     alignment and taxonomy information
>gi|195548074|gb|ACG49262.1| iron superoxide dismutase [Citrus maxima] Back     alignment and taxonomy information
>gi|347597326|gb|AEP14527.1| Fe-superoxide dismutase [Phytolacca acinosa] Back     alignment and taxonomy information
>gi|255539971|ref|XP_002511050.1| superoxide dismutase [fe], putative [Ricinus communis] gi|223550165|gb|EEF51652.1| superoxide dismutase [fe], putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15241373|ref|NP_199923.1| Fe superoxide dismutase 2 [Arabidopsis thaliana] gi|8843846|dbj|BAA97372.1| unnamed protein product [Arabidopsis thaliana] gi|21537292|gb|AAM61633.1| Fe-superoxide dismutase precursor [Arabidopsis thaliana] gi|28393352|gb|AAO42100.1| putative iron superoxide dismutase [Arabidopsis thaliana] gi|28827610|gb|AAO50649.1| putative iron superoxide dismutase [Arabidopsis thaliana] gi|110737010|dbj|BAF00460.1| hypothetical protein [Arabidopsis thaliana] gi|332008651|gb|AED96034.1| Fe superoxide dismutase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312837926|gb|ADR01110.1| Fe superoxide dismutase 2 [Brassica rapa] Back     alignment and taxonomy information
>gi|225454956|ref|XP_002280522.1| PREDICTED: superoxide dismutase [Fe], chloroplastic [Vitis vinifera] gi|297744964|emb|CBI38556.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499596|ref|XP_003518624.1| PREDICTED: superoxide dismutase [Fe], chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|387169513|gb|AFJ66174.1| hypothetical protein 11M19.17 [Arabidopsis halleri] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
TAIR|locus:2176167305 FSD2 "AT5G51100" [Arabidopsis 0.842 0.629 0.531 6.1e-55
TAIR|locus:2117273212 FSD1 "Fe superoxide dismutase 0.592 0.636 0.580 2.3e-46
TAIR|locus:2166953263 FSD3 "Fe superoxide dismutase 0.75 0.650 0.446 2.1e-38
UNIPROTKB|Q0C4B8220 sodB "Superoxide dismutase" [H 0.653 0.677 0.434 4.8e-31
UNIPROTKB|Q5VSB7255 LOC_Os06g05110 "Superoxide dis 0.754 0.674 0.380 9.1e-29
TIGR_CMR|CBU_1708193 CBU_1708 "superoxide dismutase 0.548 0.647 0.442 2.5e-26
TIGR_CMR|SO_2881194 SO_2881 "superoxide dismutase, 0.557 0.654 0.413 6.4e-26
UNIPROTKB|P0AGD3193 sodB [Escherichia coli K-12 (t 0.548 0.647 0.412 8.2e-26
TIGR_CMR|CPS_3476194 CPS_3476 "superoxide dismutase 0.543 0.639 0.423 2.7e-25
TIGR_CMR|SPO_2340199 SPO_2340 "superoxide dismutase 0.565 0.648 0.395 1e-23
TAIR|locus:2176167 FSD2 "AT5G51100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 109/205 (53%), Positives = 134/205 (65%)

Query:    28 LPFHWRNKKMEQRKTGGR-----------ISAKFDLKPPPYPLNALEPHMSKDTLEFHWG 76
             LP    N++M+ ++ G R           I+A F+LKPPPYPL+ALEPHMS++TL++HWG
Sbjct:    20 LPSQGPNRRMQWKRNGKRRLGTKVAVSGVITAGFELKPPPYPLDALEPHMSRETLDYHWG 79

Query:    77 KHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXX 136
             KHH+ YV+NLNKQI+GT+L D  SLE+VV+ SYNKG++LPAFNNAAQAWNH+FFW     
Sbjct:    80 KHHKTYVENLNKQILGTDL-DALSLEEVVLLSYNKGNMLPAFNNAAQAWNHEFFWESIQP 138

Query:   137 XXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPL 196
                         LIERDFGS             + FGSGW WL YK            PL
Sbjct:   139 GGGGKPTGELLRLIERDFGSFEEFLERFKSAAASNFGSGWTWLAYKANRLDVANAVN-PL 197

Query:   197 PSEKDKSLLVVKTPNAVNPLVWDYS 221
             P E+DK L++VKTPNAVNPLVWDYS
Sbjct:   198 PKEEDKKLVIVKTPNAVNPLVWDYS 222
GO:0004784 "superoxide dismutase activity" evidence=ISS;IDA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009295 "nucleoid" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0009579 "thylakoid" evidence=IDA
GO:0042644 "chloroplast nucleoid" evidence=IDA
GO:0055114 "oxidation-reduction process" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006399 "tRNA metabolic process" evidence=RCA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0009411 "response to UV" evidence=IEP
TAIR|locus:2117273 FSD1 "Fe superoxide dismutase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166953 FSD3 "Fe superoxide dismutase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C4B8 sodB "Superoxide dismutase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VSB7 LOC_Os06g05110 "Superoxide dismutase [Fe] 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1708 CBU_1708 "superoxide dismutase (fe)" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2881 SO_2881 "superoxide dismutase, Fe" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0AGD3 sodB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3476 CPS_3476 "superoxide dismutase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2340 SPO_2340 "superoxide dismutase, Fe" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53641SODF_PSEAE1, ., 1, 5, ., 1, ., 10.50930.66220.7823yesno
Q9LU64SODF2_ARATH1, ., 1, 5, ., 1, ., 10.70350.81570.6098yesno
Q8YSZ1SODF_NOSS11, ., 1, 5, ., 1, ., 10.52380.64910.74yesno
P37369SODF_BORPE1, ., 1, 5, ., 1, ., 10.50310.65350.7760yesno
P19685SODF_COXBU1, ., 1, 5, ., 1, ., 10.50930.66220.7823yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.15.1.10.914
3rd Layer1.15.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
PLN02685299 PLN02685, PLN02685, iron superoxide dismutase 1e-121
PLN02184212 PLN02184, PLN02184, superoxide dismutase [Fe] 8e-78
PLN02622261 PLN02622, PLN02622, iron superoxide dismutase 5e-70
COG0605204 COG0605, SodA, Superoxide dismutase [Inorganic ion 4e-65
PTZ00078193 PTZ00078, PTZ00078, Superoxide dismutase [Fe]; Pro 9e-47
PRK10543193 PRK10543, PRK10543, superoxide dismutase; Provisio 7e-46
pfam0008182 pfam00081, Sod_Fe_N, Iron/manganese superoxide dis 1e-34
PRK10925206 PRK10925, PRK10925, superoxide dismutase; Provisio 3e-32
pfam02777106 pfam02777, Sod_Fe_C, Iron/manganese superoxide dis 8e-23
PLN02471231 PLN02471, PLN02471, superoxide dismutase [Mn] 1e-19
>gnl|CDD|215369 PLN02685, PLN02685, iron superoxide dismutase Back     alignment and domain information 
 Score =  345 bits (886), Expect = e-121
 Identities = 160/223 (71%), Positives = 181/223 (81%), Gaps = 9/223 (4%)

Query: 1   MASAAAAASSAPTIWLTGQGLGGRSTRLPFHWRNKKMEQRKTG--GRISAKFDLKPPPYP 58
             +A  A+ S     L  QG   R       W+ K+    +    G I+AKF+LKPPPYP
Sbjct: 1   AVTATPASLSLSPALLPSQGPSRRM-----QWKGKRRTCTRKAVSGVITAKFELKPPPYP 55

Query: 59  LNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF 118
           L+ALEPHMS++TLE+HWGKHHRAYVDNLNKQIVGTEL DG SLEDVV+ +YNKGD+LPAF
Sbjct: 56  LDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVGTEL-DGMSLEDVVLITYNKGDMLPAF 114

Query: 119 NNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAW 178
           NNAAQAWNH+FFWESMKPGGGGKPSGELL LIERDFGSFE+F+EEFK+AAATQFGSGWAW
Sbjct: 115 NNAAQAWNHEFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQFGSGWAW 174

Query: 179 LVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYS 221
           L YKA NR DV NAVNP PSE+DK L+VVK+PNAVNPLVWDYS
Sbjct: 175 LAYKA-NRLDVGNAVNPCPSEEDKKLVVVKSPNAVNPLVWDYS 216

Length = 299
>gnl|CDD|177838 PLN02184, PLN02184, superoxide dismutase [Fe] Back     alignment and domain information
>gnl|CDD|166263 PLN02622, PLN02622, iron superoxide dismutase Back     alignment and domain information
>gnl|CDD|223678 COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|185432 PTZ00078, PTZ00078, Superoxide dismutase [Fe]; Provisional Back     alignment and domain information
>gnl|CDD|182534 PRK10543, PRK10543, superoxide dismutase; Provisional Back     alignment and domain information
>gnl|CDD|200985 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin domain Back     alignment and domain information
>gnl|CDD|182843 PRK10925, PRK10925, superoxide dismutase; Provisional Back     alignment and domain information
>gnl|CDD|202388 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal domain Back     alignment and domain information
>gnl|CDD|215262 PLN02471, PLN02471, superoxide dismutase [Mn] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 228
PLN02685299 iron superoxide dismutase 100.0
PLN02184212 superoxide dismutase [Fe] 100.0
COG0605204 SodA Superoxide dismutase [Inorganic ion transport 100.0
PRK10543193 superoxide dismutase; Provisional 100.0
PRK10925206 superoxide dismutase; Provisional 100.0
PLN02622261 iron superoxide dismutase 100.0
PTZ00078193 Superoxide dismutase [Fe]; Provisional 100.0
PLN02471231 superoxide dismutase [Mn] 100.0
KOG0876234 consensus Manganese superoxide dismutase [Inorgani 100.0
PF0008182 Sod_Fe_N: Iron/manganese superoxide dismutases, al 99.97
PF02777106 Sod_Fe_C: Iron/manganese superoxide dismutases, C- 99.82
>PLN02685 iron superoxide dismutase Back     alignment and domain information 
Probab=100.00  E-value=2.1e-54  Score=390.37  Aligned_cols=201  Identities=80%  Similarity=1.350  Sum_probs=176.0

Q ss_pred             eeecCCCCCCCCccccccccccc-ccccc-CCceecceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027081           15 WLTGQGLGGRSTRLPFHWRNKKM-EQRKT-GGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG   92 (228)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~lP~LpY~~~~LeP~IS~~tl~~Hy~khh~~YV~nLN~~l~~   92 (228)
                      .|..||-   |.|  .||..|.+ |..+. ...+.++|+||+|||+|++|||+||++||++||+|||++||+|||+++++
T Consensus        15 ~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~~LN~al~~   89 (299)
T PLN02685         15 LLPSQGP---SRR--MQWKGKRRTCTRKAVSGVITAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVG   89 (299)
T ss_pred             cCcccCC---ccc--chhhhhhhhhhhhccccccccceecCCCCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4566654   444  58987755 33333 33466789999999999999999999999999999999999999999999


Q ss_pred             ccccCCCChHHHHHHhhcCCCcchhhcchhhhhhhHhhhcccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Q 027081           93 TELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQF  172 (228)
Q Consensus        93 t~~~~~~sl~~ii~~~~~~~~~~~ifN~ag~~~NH~fFw~~L~P~~~~~P~g~L~~aI~~sFGS~e~fK~~F~~~A~s~f  172 (228)
                      +++ +++++++|+.....+++...+||+|||+|||+|||++|+|++++.|++.|.++|+++|||||+||++|.++|.++|
T Consensus        90 t~l-~~~sl~eii~~~~~~~~~~~ifNnaggh~NH~fFWe~L~P~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s~f  168 (299)
T PLN02685         90 TEL-DGMSLEDVVLITYNKGDMLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQF  168 (299)
T ss_pred             chh-hcCCHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Confidence            888 8899999987666666656799999999999999999999887889999999999999999999999999999999


Q ss_pred             cccEEEEEEecCccccccccCCCCCCCCCCceEEEecCCCCCCCcCCCcC
Q 027081          173 GSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSV  222 (228)
Q Consensus       173 GSGWvWLV~d~~~~l~v~~~~~~~~~~~~~kL~Iv~T~N~~~P~~~~~~~  222 (228)
                      ||||+|||+++ ++|+|.++.||.+...+++|.|++|+|+++|++.+..|
T Consensus       169 GSGWvWLV~~~-~~~~~~~~~np~~~~~~~~L~i~~t~n~d~pl~~~~~P  217 (299)
T PLN02685        169 GSGWAWLAYKA-NRLDVGNAVNPCPSEEDKKLVVVKSPNAVNPLVWDYSP  217 (299)
T ss_pred             CCeEEEEEEcc-ccccccccccccccccCCceeEEeccCCCCCccCCCEe
Confidence            99999999974 78999999998876667899999999999999888665

>PLN02184 superoxide dismutase [Fe] Back     alignment and domain information
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10543 superoxide dismutase; Provisional Back     alignment and domain information
>PRK10925 superoxide dismutase; Provisional Back     alignment and domain information
>PLN02622 iron superoxide dismutase Back     alignment and domain information
>PTZ00078 Superoxide dismutase [Fe]; Provisional Back     alignment and domain information
>PLN02471 superoxide dismutase [Mn] Back     alignment and domain information
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately Back     alignment and domain information
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
1unf_X238 The Crystal Structure Of The Eukaryotic Fesod From 1e-54
1my6_A199 The 1.6 A Structure Of Fe-superoxide Dismutase From 1e-26
3js4_A227 Crystal Structure Of Iron Superoxide Dismutase From 4e-23
3tqj_A210 Structure Of The Superoxide Dismutase (Fe) (Sodb) F 9e-23
1isa_A192 Structure-Function In E. Coli Iron Superoxide Dismu 1e-22
3h1s_A195 Crystal Structure Of Superoxide Dismutase From Fran 2e-22
2nyb_A192 Crystal Structure Of E.Coli Iron Superoxide Dismuta 3e-22
1za5_A192 Q69h-Fesod Length = 192 4e-22
1dt0_A197 Cloning, Sequence, And Crystallographic Structure O 8e-22
3sdp_A195 The 2.1 Angstroms Resolution Structure Of Iron Supe 1e-21
3lio_A192 X-Ray Structure Of The Iron Superoxide Dismutase Fr 9e-21
2w7w_A194 The Crystal Structure Of Iron Superoxide Dismutase 8e-20
2cw2_A226 Crystal Structure Of Superoxide Dismutase From P. M 2e-19
2a03_A206 Superoxide Dismutase Protein From Plasmodium Berghe 3e-18
2bpi_A206 Stucture Of Iron Dependent Superoxide Dismutase Fro 1e-17
2goj_A197 The Crystal Structure Of The Enzyme Fe-Superoxide D 1e-17
1ues_A191 Crystal Structure Of Porphyromonas Gingivalis Sod L 2e-17
1qnn_A191 Cambialistic Superoxide Dismutase From Porphyromona 2e-17
2awp_A198 Crystal Structure Of Plasmodium Knowlesi Structure 4e-17
1xuq_A212 Crystal Structure Of Soda-1 (Ba4499) From Bacillus 3e-15
1y67_A229 Crystal Structure Of Manganese Superoxide Dismutase 4e-15
3tjt_A208 Crystal Structure Analysis Of The Superoxide Dismut 4e-15
2cdy_A231 Manganese Superoxide Dismutase (Mn-Sod) From Deinoc 1e-14
3kky_A211 Structure Of Manganese Superoxide Dismutase From De 1e-14
3cei_A213 Crystal Structure Of Superoxide Dismutase From Heli 3e-14
4f2n_A230 Crystal Structure Of Iron Superoxide Dismutase From 5e-14
1en6_A205 Crystal Structure Analysis Of The E. Coli Manganese 6e-14
1i0h_A205 Crystal Structure Of The E. Coli Manganese Superoxi 6e-14
1vew_A205 Manganese Superoxide Dismutase From Escherichia Col 6e-14
1en4_A205 Crystal Structure Analysis Of The E. Coli Manganese 6e-14
2rcv_A202 Crystal Structure Of The Bacillus Subtilis Superoxi 1e-13
1en5_A205 Crystal Structure Analysis Of The E. Coli Manganese 2e-13
1i08_A205 Crystal Structure Analysis Of The H30a Mutant Of Ma 6e-13
4h3e_A241 Crystal Structure Of A Putative Iron Superoxide Dis 9e-13
1jr9_A202 Crystal Structure Of Manganese Superoxide Dismutase 3e-12
3esf_A197 Crystal Structure Of The Enzyme Fe-Superoxide Dismu 1e-11
3mds_A203 Maganese Superoxide Dismutase From Thermus Thermoph 2e-11
2gpc_A194 The Crystal Structure Of The Enzyme Fe-Superoxide D 1e-10
1gv3_A248 The 2.0 Angstrom Resolution Structure Of The Cataly 4e-10
1xre_A217 Crystal Structure Of Soda-2 (Ba5696) From Bacillus 2e-09
2cw3_A280 X-Ray Structure Of Pmsod2, Superoxide Dismutase Fro 5e-09
1var_A198 Mitochondrial Manganese Superoxide Dismutase Varian 6e-09
1ja8_A198 Kinetic Analysis Of Product Inhibition In Human Man 7e-09
1msd_A198 Comparison Of The Crystal Structures Of Genetically 8e-09
2qka_A196 Structural And Kinetic Study Of The Differences Bet 8e-09
1n0j_A199 The Structure Of Human Mitochondrial Mn3+ Superoxid 8e-09
1pl4_A198 Crystal Structure Of Human Mnsod Y166f Mutant Lengt 8e-09
3c3t_A198 Role Of A Glutamate Bridge Spanning The Dimeric Int 8e-09
2qkc_A196 Structural And Kinetic Study Of The Differences Bet 8e-09
3c3s_A198 Role Of A Glutamate Bridge Spanning The Dimeric Int 9e-09
1em1_A198 X-Ray Crystal Structure For Human Manganese Superox 9e-09
1qnm_A198 Human Manganese Superoxide Dismutase Mutant Q143n L 9e-09
1ap5_A198 Tyr34->phe Mutant Of Human Mitochondrial Manganese 2e-08
1zte_A198 Contribution To Structure And Catalysis Of Tyrosine 3e-08
1luw_A198 Catalytic And Structural Effects Of Amino-Acid Subs 5e-08
2gds_A198 Interrupting The Hydrogen Bonding Network At The Ac 5e-08
1pm9_A198 Crystal Structure Of Human Mnsod H30n, Y166f Mutant 5e-08
1zuq_A198 Contribution To Structure And Catalysis Of Tyrosine 5e-08
2adp_A198 Nitrated Human Manganese Superoxide Dismutase Lengt 6e-08
1kkc_A221 Crystal Structure Of Aspergillus Fumigatus Mnsod Le 6e-08
1zsp_A198 Contribution To Structure And Catalysis Of Tyrosine 7e-08
1ma1_A205 Structure And Properties Of The Atypical Iron Super 7e-08
1xil_A198 Hydrogen Bonding In Human Manganese Superoxide Dism 8e-08
2p4k_A198 Contribution To Structure And Catalysis Of Tyrosine 8e-08
1n0n_A199 Catalytic And Structural Effects Of Amino-Acid Subs 1e-07
1szx_A198 Role Of Hydrogen Bonding In The Active Site Of Huma 2e-07
1xdc_A198 Hydrogen Bonding In Human Manganese Superoxide Dism 2e-07
1ar4_A201 X-Ray Structure Analysis Of The Cambialistic Supero 5e-07
3dc6_A198 Crystal Structure Of A Manganese Superoxide Dismuta 2e-06
1wb8_A210 Iron Superoxide Dismutase (Fe-Sod) From The Hyperth 2e-06
3dc5_A195 Crystal Structure Of A Manganese Superoxide Dismuta 2e-06
1wb7_A210 Iron Superoxide Dismutase (Fe-Sod) From The Hyperth 6e-06
3evk_A222 Crystal Structure Of The Metal-Bound Superoxide Dis 6e-06
1ids_A207 X-Ray Structure Analysis Of The Iron-Dependent Supe 6e-05
1gn3_A207 H145q Mutant Of Mycobacterium Tuberculosis Iron-Sup 7e-05
1gn4_A207 H145e Mutant Of Mycobacterium Tuberculosis Iron-Sup 7e-05
1gn6_A207 G152a Mutant Of Mycobacterium Tuberculosis Iron-Sup 7e-05
3ak1_A214 Superoxide Dismutase From Aeropyrum Pernix K1, Apo- 1e-04
4ffk_A223 X-Ray Structure Of Iron Superoxide Dismutase From A 2e-04
1gn2_A207 S123c Mutant Of The Iron-Superoxide Dismutase From 2e-04
1b06_A210 Superoxide Dismutase From Sulfolobus Acidocaldarius 2e-04
3qvn_A206 Crystal Structure Of Cytosolic Mnsod3 From Candida 2e-04
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna Unguiculata Suggests A New Enzymatic Mechanism Length = 238 Back     alignment and structure 
Iteration: 1

 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/178 (57%), Positives = 121/178 (67%), Gaps = 2/178 (1%)
Query: 41  KTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKS 100
           K G +++AKF+LKPPPYPLN LEP MS+ TLEFHWGKHHR YV+NL KQ+VGTEL DGKS
Sbjct: 10  KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTEL-DGKS 68
Query: 101 LEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXX 160
           LE++++ +YNKGD+LPAFNNAAQ WNHDFFW                 LIERDFGS    
Sbjct: 69  LEEIIVTAYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKF 128
Query: 161 XXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW 218
                    TQFGSGWAWL YK            P  +++D  L+V+K+PNAVNPLVW
Sbjct: 129 LDEFKAAAATQFGSGWAWLAYKASKLDGENAANPP-SADEDNKLVVIKSPNAVNPLVW 185
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation Of Epr And Structural Characteristics Length = 199 Back     alignment and structure
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From Anaplasma Phagocytophilum Length = 227 Back     alignment and structure
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From Coxiella Burnetii Length = 210 Back     alignment and structure
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase: Comparisons With The Manganese Enzyme From T. Thermophilus Length = 192 Back     alignment and structure
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 195 Back     alignment and structure
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e At 1.1 Angstrom Resolution Length = 192 Back     alignment and structure
>pdb|1ZA5|A Chain A, Q69h-Fesod Length = 192 Back     alignment and structure
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis Length = 197 Back     alignment and structure
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide Dismutase From Pseudomonas Ovalis Length = 195 Back     alignment and structure
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From Pseudoalteromonas Haloplanktis (Crystal Form I) Length = 192 Back     alignment and structure
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From Aliivibrio Salmonicida. Length = 194 Back     alignment and structure
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus Length = 226 Back     alignment and structure
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei Length = 206 Back     alignment and structure
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P. Falciparum. Length = 206 Back     alignment and structure
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide Dismutase From Plasmodium Falciparum Length = 197 Back     alignment and structure
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod Length = 191 Back     alignment and structure
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas Gingivalis Length = 191 Back     alignment and structure
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron Super-Oxide Dismutase Length = 198 Back     alignment and structure
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus Anthracis At 1.8a Resolution. Length = 212 Back     alignment and structure
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From Deinococcus Radiodurans Length = 229 Back     alignment and structure
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase From Clostridium Difficile Length = 208 Back     alignment and structure
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus Radiodurans Length = 231 Back     alignment and structure
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From Deinococcus Radiodurans In The Orthorhombic Space Group P212121: A Case Study Of Mistaken Identity Length = 211 Back     alignment and structure
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From Helicobacter Pylori Length = 213 Back     alignment and structure
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From Leishmania Major Length = 230 Back     alignment and structure
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese Superoxide Dismutase Q146l Mutant Length = 205 Back     alignment and structure
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide Dismutase Mutant Y174f At 1.35 Angstroms Resolution. Length = 205 Back     alignment and structure
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli Length = 205 Back     alignment and structure
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese Superoxide Dismutase Q146h Mutant Length = 205 Back     alignment and structure
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide Dismutase Length = 202 Back     alignment and structure
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese Superoxide Dismutase Y34f Mutant Length = 205 Back     alignment and structure
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese Superoxide Dismutase From E. Coli Length = 205 Back     alignment and structure
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase From Trypanosoma Cruzi Bound To Iron Length = 241 Back     alignment and structure
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From Bacillus Halodenitrificans Length = 202 Back     alignment and structure
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase Tbsodb2 From Trypanosoma Brucei Length = 197 Back     alignment and structure
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus Length = 203 Back     alignment and structure
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide Dismutase From Trypanosoma Cruzi Length = 194 Back     alignment and structure
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic Portion Of A Cyanobacterial Membrane-Bound Manganese Superoxide Dismutase Length = 248 Back     alignment and structure
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus Anthracis At 1.8a Resolution. Length = 217 Back     alignment and structure
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From Perkinsus Marinus Length = 280 Back     alignment and structure
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With Ile 58 Replaced By Thr Length = 198 Back     alignment and structure
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically Engineered Human Manganese Superoxide Dismutase And Manganese Superoxide Dismutase From Thermus Thermophilus. Differences In Dimer-Dimer Interactions. Length = 198 Back     alignment and structure
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between Human And E.Coli Manganese Superoxide Dismutases Length = 196 Back     alignment and structure
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide Dismutase Reveals A Novel Tetrameric Interface Of Two 4-Helix Bundles Length = 199 Back     alignment and structure
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant Length = 198 Back     alignment and structure
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between Human And E.Coli Manganese Superoxide Dismutases Length = 196 Back     alignment and structure
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide Dismutase, Q143a Length = 198 Back     alignment and structure
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n Length = 198 Back     alignment and structure
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Suerpoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid Substitution At His 30 In Human Manganese Superoxide Dismutase: Insertion Of Val Cgamma Into The Substrate Access Channel Length = 198 Back     alignment and structure
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active Site Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant Length = 198 Back     alignment and structure
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod Length = 221 Back     alignment and structure
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide Dismutase From Methanobacterium Thermoautotrophicum Length = 205 Back     alignment and structure
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase Containing 3- Fluorotyrosine Length = 198 Back     alignment and structure
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid Substitution At His30 In Human Manganese Superoxide Dismutase Length = 199 Back     alignment and structure
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase Containing 3- Fluorotyrosine Length = 198 Back     alignment and structure
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide Dismutase From Propionibacterium Shermanii Active With Fe Or Mn Length = 201 Back     alignment and structure
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases From Caenorhabditis Elegans Length = 198 Back     alignment and structure
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The Hyperthermophile Sulfolobus Solfataricus. 2.3 A Resolution Structure Of Recombinant Protein With A Covalently Modified Tyrosin In The Active Site. Length = 210 Back     alignment and structure
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases From Caenorhabditis Elegans Length = 195 Back     alignment and structure
>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The Hyperthermophile Sulfolobus Solfataricus. Crystal Structure Of The Y41f Mutant. Length = 210 Back     alignment and structure
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide Dismutase From Pyrobaculum Aerophilum Length = 222 Back     alignment and structure
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis At 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions Length = 207 Back     alignment and structure
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide Dismutase. Length = 207 Back     alignment and structure
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide Dismutase. Length = 207 Back     alignment and structure
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide Dismutase. Length = 207 Back     alignment and structure
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form Length = 214 Back     alignment and structure
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From Acidilobus Saccharovorans Length = 223 Back     alignment and structure
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From Mycobacterium Tuberculosis. Length = 207 Back     alignment and structure
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius Length = 210 Back     alignment and structure
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida Albicans Length = 206 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
1unf_X238 Iron superoxide dismutase; oxidoreductase, eukaryo 2e-99
1my6_A199 Iron (III) superoxide dismutase; iron speroxide di 5e-86
3js4_A227 Superoxide dismutase; niaid, ssgcid, seattle struc 4e-85
3lio_A192 Iron superoxide dismutase; cold adaptation, flexib 1e-83
2nyb_A192 Superoxide dismutase [FE]; iron superoxide dismuta 3e-83
2awp_A198 Iron super-oxide dismutase; structural genomics, s 3e-83
1uer_A191 SOD, superoxide dismutase; metal-specific, cambial 1e-82
3tqj_A210 Superoxide dismutase [FE]; oxidoreductase; 2.00A { 1e-82
1dt0_A197 Superoxide dismutase; pseudomonas ovalis, oxidored 2e-82
3h1s_A195 Superoxide dismutase; SOBD, csgid, oxidoreductase, 2e-80
2cw2_A226 Superoxide dismutase 1; SOD, oxidoreductase; 1.86A 4e-80
3cei_A213 Superoxide dismutase; oxidoreductase; 2.40A {Helic 6e-80
4f2n_A230 Superoxide dismutase; ssgcid, NIH, niaid, SBRI, em 8e-79
2gpc_A194 Iron superoxide dismutase; alpha+beta structure, o 5e-78
2cw3_A280 Pmsod2, iron superoxide dismutase; oxidoreductase; 8e-76
3kky_A211 Mnsod, superoxide dismutase [MN]; manganese, ME bi 6e-75
2rcv_A202 Superoxide dismutase [MN]; bacillus subtilis,super 2e-74
1gv3_A248 Manganese superoxide dismutase; anabaena PCC 7120, 5e-73
1xre_A217 SODA-2, superoxide dismutase; spine, oxidoreductas 1e-70
1mng_A203 Manganese superoxide dismutase; oxidoreductase(sup 2e-68
1ix9_A205 Mnsod, superoxide dismutase; manganese superoxide 7e-68
1ma1_A205 Superoxide dismutase; metal specificity, azide inh 1e-61
4ffk_A223 Superoxide dismutase; oxidoreductase, superoxide a 1e-61
1b06_A210 Protein (superoxide dismutase); oxidoreductase; 2. 3e-61
1ids_A207 Iron superoxide dismutase; 2.00A {Mycobacterium tu 3e-60
1pl4_A198 Superoxide dismutase [MN], mitochondrial; oxidored 1e-58
1bsm_A201 Superoxide dismutase; oxidoreductase; 1.35A {Propi 1e-58
3rn4_A215 Superoxide dismutase [MN], mitochondrial; mitochon 5e-58
3ak2_A214 Superoxide dismutase [MN/FE]; cambialistic, oxidor 6e-58
1coj_A212 Protein (superoxide dismutase); oxidoreductase; 1. 1e-57
3dc5_A195 Superoxide dismutase [MN] 2; alpha hairpin N domai 4e-56
3qvn_A206 Manganese-containing superoxide dismutase; Mn supe 1e-53
1kkc_A221 Mnsod, manganese superoxide dismutase; homotetrame 2e-53
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic, metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1 d.44.1.1 Length = 238 Back     alignment and structure
 Score =  287 bits (737), Expect = 2e-99
 Identities = 134/179 (74%), Positives = 156/179 (87%), Gaps = 2/179 (1%)

Query: 41  KTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKS 100
           K G +++AKF+LKPPPYPLN LEP MS+ TLEFHWGKHHR YV+NL KQ+VGTEL DGKS
Sbjct: 10  KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTEL-DGKS 68

Query: 101 LEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKF 160
           LE++++ +YNKGD+LPAFNNAAQ WNHDFFWE MKPGGGGKPSGELL LIERDFGSFEKF
Sbjct: 69  LEEIIVTAYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKF 128

Query: 161 LEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWD 219
           L+EFKAAAATQFGSGWAWL YKA ++ D  NA NP  +++D  L+V+K+PNAVNPLVW 
Sbjct: 129 LDEFKAAAATQFGSGWAWLAYKA-SKLDGENAANPPSADEDNKLVVIKSPNAVNPLVWG 186
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1 Length = 199 Back     alignment and structure
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.95A {Anaplasma phagocytophilum} Length = 227 Back     alignment and structure
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal stability, psychrophilic protein, metal-binding, oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A Length = 192 Back     alignment and structure
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod, oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A Length = 192 Back     alignment and structure
>2awp_A Iron super-oxide dismutase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.00A {Plasmodium knowlesi} PDB: 2bpi_A 2a03_A 2goj_A Length = 198 Back     alignment and structure
>1uer_A SOD, superoxide dismutase; metal-specific, cambialistic, oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP: a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A Length = 191 Back     alignment and structure
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella burnetii} Length = 210 Back     alignment and structure
>1dt0_A Superoxide dismutase; pseudomonas ovalis, oxidoreductase; 2.10A {Pseudomonas putida} SCOP: a.2.11.1 d.44.1.1 Length = 197 Back     alignment and structure
>3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structura genomics; 1.90A {Francisella tularensis subsp} Length = 195 Back     alignment and structure
>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus marinus} Length = 226 Back     alignment and structure
>3cei_A Superoxide dismutase; oxidoreductase; 2.40A {Helicobacter pylori} Length = 213 Back     alignment and structure
>4f2n_A Superoxide dismutase; ssgcid, NIH, niaid, SBRI, emerald biostructures, structural national institute of allergy and infectious diseases; 1.85A {Leishmania major} Length = 230 Back     alignment and structure
>2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase; 1.90A {Trypanosoma cruzi} PDB: 3esf_A Length = 194 Back     alignment and structure
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus marinus} Length = 280 Back     alignment and structure
>3kky_A Mnsod, superoxide dismutase [MN]; manganese, ME binding, oxidoreductase, metal binding protein; 1.80A {Deinococcus radiodurans} PDB: 2cdy_A 2ce4_A 1y67_A 2aw9_A Length = 211 Back     alignment and structure
>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase, manganese, metal- binding, oxidoreductase, phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A 1jr9_A Length = 202 Back     alignment and structure
>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena SP} SCOP: a.2.11.1 d.44.1.1 Length = 248 Back     alignment and structure
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis} Length = 217 Back     alignment and structure
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1 d.44.1.1 PDB: 3mds_A Length = 203 Back     alignment and structure
>1ix9_A Mnsod, superoxide dismutase; manganese superoxide dismutase, Y174F mutant, hydrogen bond, reactivity, ultra-high resolution, oxidoreductase; 0.90A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 1i0h_A 1ixb_A 1zlz_A 1d5n_A 1mmm_A 1vew_A 3k9s_A 3ot7_A 1en5_A 1en4_A 1i08_A 1en6_A Length = 205 Back     alignment and structure
>1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide inactivation, oxidoreductase; 2.60A {Methanothermobacterthermautotrophicus} SCOP: a.2.11.1 d.44.1.1 Length = 205 Back     alignment and structure
>4ffk_A Superoxide dismutase; oxidoreductase, superoxide acceptor; 1.76A {Acidilobus saccharovorans} Length = 223 Back     alignment and structure
>1b06_A Protein (superoxide dismutase); oxidoreductase; 2.20A {Sulfolobus acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A* 1wb7_A Length = 210 Back     alignment and structure
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP: a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A Length = 207 Back     alignment and structure
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A 1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A 3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A* 1zsp_A 1n0n_A 2p4k_A ... Length = 198 Back     alignment and structure
>1bsm_A Superoxide dismutase; oxidoreductase; 1.35A {Propionibacterium freudenreichii subspshermanii} SCOP: a.2.11.1 d.44.1.1 PDB: 1ar4_A 1ar5_A 1bs3_A 1avm_A 1bt8_A Length = 201 Back     alignment and structure
>3rn4_A Superoxide dismutase [MN], mitochondrial; mitochondrial manganese superoxide dismutase, iron-binding, mitochondrion, oxidoreductase; 1.79A {Saccharomyces cerevisiae} PDB: 3bfr_A 3lsu_A* Length = 215 Back     alignment and structure
>3ak2_A Superoxide dismutase [MN/FE]; cambialistic, oxidoreductase; 1.35A {Aeropyrum pernix} PDB: 3ak1_A 3ak3_A 1p7g_A 3evk_A Length = 214 Back     alignment and structure
>1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex pyrophilus} SCOP: a.2.11.1 d.44.1.1 Length = 212 Back     alignment and structure
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C domain, oxidoreductase, manganese, metal-binding, mitochondrion; 1.70A {Caenorhabditis elegans} PDB: 3dc6_A Length = 195 Back     alignment and structure
>3qvn_A Manganese-containing superoxide dismutase; Mn superoxide dismutase, oxidoreductase; 2.60A {Candida albicans} Length = 206 Back     alignment and structure
>1kkc_A Mnsod, manganese superoxide dismutase; homotetramer, oxidoreductase; 2.00A {Aspergillus fumigatus} SCOP: a.2.11.1 d.44.1.1 Length = 221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
1unf_X238 Iron superoxide dismutase; oxidoreductase, eukaryo 100.0
1uer_A191 SOD, superoxide dismutase; metal-specific, cambial 100.0
3tqj_A210 Superoxide dismutase [FE]; oxidoreductase; 2.00A { 100.0
1my6_A199 Iron (III) superoxide dismutase; iron speroxide di 100.0
1mng_A203 Manganese superoxide dismutase; oxidoreductase(sup 100.0
3h1s_A195 Superoxide dismutase; SOBD, csgid, oxidoreductase, 100.0
3lio_A192 Iron superoxide dismutase; cold adaptation, flexib 100.0
2nyb_A192 Superoxide dismutase [FE]; iron superoxide dismuta 100.0
1dt0_A197 Superoxide dismutase; pseudomonas ovalis, oxidored 100.0
2awp_A198 Iron super-oxide dismutase; structural genomics, s 100.0
3kky_A211 Mnsod, superoxide dismutase [MN]; manganese, ME bi 100.0
2rcv_A202 Superoxide dismutase [MN]; bacillus subtilis,super 100.0
1xre_A217 SODA-2, superoxide dismutase; spine, oxidoreductas 100.0
1gv3_A248 Manganese superoxide dismutase; anabaena PCC 7120, 100.0
3js4_A227 Superoxide dismutase; niaid, ssgcid, seattle struc 100.0
2gpc_A194 Iron superoxide dismutase; alpha+beta structure, o 100.0
3cei_A213 Superoxide dismutase; oxidoreductase; 2.40A {Helic 100.0
4f2n_A230 Superoxide dismutase; ssgcid, NIH, niaid, SBRI, em 100.0
2cw2_A226 Superoxide dismutase 1; SOD, oxidoreductase; 1.86A 100.0
3tjt_A208 Superoxide dismutase; metal ION binding, rossmann 100.0
4h3e_A241 Fesod, superoxide dismutase; structural genomics, 100.0
1ix9_A205 Mnsod, superoxide dismutase; manganese superoxide 100.0
4ffk_A223 Superoxide dismutase; oxidoreductase, superoxide a 100.0
1b06_A210 Protein (superoxide dismutase); oxidoreductase; 2. 100.0
1ma1_A205 Superoxide dismutase; metal specificity, azide inh 100.0
1ids_A207 Iron superoxide dismutase; 2.00A {Mycobacterium tu 100.0
1bsm_A201 Superoxide dismutase; oxidoreductase; 1.35A {Propi 100.0
3dc5_A195 Superoxide dismutase [MN] 2; alpha hairpin N domai 100.0
3ak2_A214 Superoxide dismutase [MN/FE]; cambialistic, oxidor 100.0
1pl4_A198 Superoxide dismutase [MN], mitochondrial; oxidored 100.0
3rn4_A215 Superoxide dismutase [MN], mitochondrial; mitochon 100.0
2cw3_A280 Pmsod2, iron superoxide dismutase; oxidoreductase; 100.0
3qvn_A206 Manganese-containing superoxide dismutase; Mn supe 100.0
1kkc_A221 Mnsod, manganese superoxide dismutase; homotetrame 100.0
1coj_A212 Protein (superoxide dismutase); oxidoreductase; 1. 100.0
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic, metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
Probab=100.00  E-value=1.4e-56  Score=393.38  Aligned_cols=178  Identities=75%  Similarity=1.346  Sum_probs=150.7

Q ss_pred             CCceecceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCChHHHHHHhhcCCCcchhhcchh
Q 027081           43 GGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAA  122 (228)
Q Consensus        43 ~~~~~~~~~lP~LpY~~~~LeP~IS~~tl~~Hy~khh~~YV~nLN~~l~~t~~~~~~sl~~ii~~~~~~~~~~~ifN~ag  122 (228)
                      ...++|.|+||+|||+|++|||+||++||++||+|||++||+|||++++++++ +++++++||......++...+|||||
T Consensus        12 ~~~~~~~~~Lp~LpY~~~aLeP~iS~~tm~~Hh~kHh~~YV~nLN~~~~~~~~-~~~~l~~ii~~~~~~~~~~~i~nnag   90 (238)
T 1unf_X           12 GPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTEL-DGKSLEEIIVTAYNKGDILPAFNNAA   90 (238)
T ss_dssp             --CCSSSCCCCCCSSCTTTTTTTSCHHHHHHHTTTHHHHHHHHHHHHC--CTT-TTCCHHHHHHHHHGGGSCCTHHHHHH
T ss_pred             CccccceeeCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHhcchhh-hcCCHHHHHHHhhcchhhHHHHHHHH
Confidence            33467889999999999999999999999999999999999999999999888 89999999987665555678999999


Q ss_pred             hhhhhHhhhcccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccccEEEEEEecCccccccccCCCCCCCCCC
Q 027081          123 QAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDK  202 (228)
Q Consensus       123 ~~~NH~fFw~~L~P~~~~~P~g~L~~aI~~sFGS~e~fK~~F~~~A~s~fGSGWvWLV~d~~~~l~v~~~~~~~~~~~~~  202 (228)
                      |++||+|||++|+|++++.|+++|+++|+++|||||+||++|.++|.++|||||+|||++.+ ++++.++.+|.+.+.++
T Consensus        91 g~~NH~~Fw~~L~P~gg~~P~g~L~~aI~~~FGS~e~fk~~F~~aa~~~fGSGW~WLv~~~~-~~~~~~~~~p~~~~~~~  169 (238)
T 1unf_X           91 QVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLAYKAS-KLDGENAANPPSADEDN  169 (238)
T ss_dssp             HHHHHHHHHHTBCTTCCSCCCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEEECG-GGC---------CCCCS
T ss_pred             HHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEecc-cccccccccccCCCCCC
Confidence            99999999999999877899999999999999999999999999999999999999999643 44555677776655678


Q ss_pred             ceEEEecCCCCCCCcCC-CcC
Q 027081          203 SLLVVKTPNAVNPLVWD-YSV  222 (228)
Q Consensus       203 kL~Iv~T~N~~~P~~~~-~~~  222 (228)
                      +|.|++|+|||+|++.+ ..|
T Consensus       170 ~L~I~~t~n~d~pl~~g~~~P  190 (238)
T 1unf_X          170 KLVVIKSPNAVNPLVWGGYYP  190 (238)
T ss_dssp             EEEEEEEETTCCGGGSCSEEE
T ss_pred             eEEEEeccCCCCCccCCCcee
Confidence            99999999999999987 555
>1uer_A SOD, superoxide dismutase; metal-specific, cambialistic, oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP: a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A Back     alignment and structure
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella burnetii} Back     alignment and structure
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1 d.44.1.1 PDB: 3mds_A Back     alignment and structure
>3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structura genomics; 1.90A {Francisella tularensis subsp} Back     alignment and structure
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal stability, psychrophilic protein, metal-binding, oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A Back     alignment and structure
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod, oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A Back     alignment and structure
>1dt0_A Superoxide dismutase; pseudomonas ovalis, oxidoreductase; 2.10A {Pseudomonas putida} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
>2awp_A Iron super-oxide dismutase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.00A {Plasmodium knowlesi} PDB: 2bpi_A 2a03_A 2goj_A Back     alignment and structure
>3kky_A Mnsod, superoxide dismutase [MN]; manganese, ME binding, oxidoreductase, metal binding protein; 1.80A {Deinococcus radiodurans} PDB: 2cdy_A 2ce4_A 1y67_A 2aw9_A Back     alignment and structure
>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase, manganese, metal- binding, oxidoreductase, phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A 1jr9_A Back     alignment and structure
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis} Back     alignment and structure
>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena SP} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase; 1.90A {Trypanosoma cruzi} PDB: 3esf_A Back     alignment and structure
>3cei_A Superoxide dismutase; oxidoreductase; 2.40A {Helicobacter pylori} Back     alignment and structure
>4f2n_A Superoxide dismutase; ssgcid, NIH, niaid, SBRI, emerald biostructures, structural national institute of allergy and infectious diseases; 1.85A {Leishmania major} Back     alignment and structure
>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus marinus} Back     alignment and structure
>3tjt_A Superoxide dismutase; metal ION binding, rossmann fold, oxidoreductase; 1.80A {Clostridium difficile} Back     alignment and structure
>4h3e_A Fesod, superoxide dismutase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Trypanosoma cruzi} Back     alignment and structure
>1ix9_A Mnsod, superoxide dismutase; manganese superoxide dismutase, Y174F mutant, hydrogen bond, reactivity, ultra-high resolution, oxidoreductase; 0.90A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 1i0h_A 1ixb_A 1zlz_A 1d5n_A 1mmm_A 1vew_A 3k9s_A 3ot7_A 1en5_A 1en4_A 1i08_A 1en6_A Back     alignment and structure
>4ffk_A Superoxide dismutase; oxidoreductase, superoxide acceptor; 1.76A {Acidilobus saccharovorans} Back     alignment and structure
>1b06_A Protein (superoxide dismutase); oxidoreductase; 2.20A {Sulfolobus acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A* 1wb7_A Back     alignment and structure
>1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide inactivation, oxidoreductase; 2.60A {Methanothermobacterthermautotrophicus} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP: a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A Back     alignment and structure
>1bsm_A Superoxide dismutase; oxidoreductase; 1.35A {Propionibacterium freudenreichii subspshermanii} SCOP: a.2.11.1 d.44.1.1 PDB: 1ar4_A 1ar5_A 1bs3_A 1avm_A 1bt8_A Back     alignment and structure
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C domain, oxidoreductase, manganese, metal-binding, mitochondrion; 1.70A {Caenorhabditis elegans} PDB: 3dc6_A Back     alignment and structure
>3ak2_A Superoxide dismutase [MN/FE]; cambialistic, oxidoreductase; 1.35A {Aeropyrum pernix} PDB: 3ak1_A 3ak3_A 1p7g_A 3evk_A Back     alignment and structure
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A 1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A 3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A* 1zsp_A 1n0n_A 2p4k_A ... Back     alignment and structure
>3rn4_A Superoxide dismutase [MN], mitochondrial; mitochondrial manganese superoxide dismutase, iron-binding, mitochondrion, oxidoreductase; 1.79A {Saccharomyces cerevisiae} PDB: 3bfr_A 3lsu_A* 4e4e_A* Back     alignment and structure
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus marinus} Back     alignment and structure
>3qvn_A Manganese-containing superoxide dismutase; Mn superoxide dismutase, oxidoreductase; 2.60A {Candida albicans} Back     alignment and structure
>1kkc_A Mnsod, manganese superoxide dismutase; homotetramer, oxidoreductase; 2.00A {Aspergillus fumigatus} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
>1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex pyrophilus} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 228
d1unfx191 a.2.11.1 (X:14-104) Fe superoxide dismutase (FeSOD 2e-36
d1jr9a190 a.2.11.1 (A:2-91) Mn superoxide dismutase (MnSOD) 9e-32
d1gv3a1102 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD 2e-30
d1ix9a190 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) 4e-30
d1my6a188 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) 1e-29
d1mnga192 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) 5e-29
d1uera184 a.2.11.1 (A:1-84) Cambialistic superoxide dismutas 7e-29
d1p7ga192 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD 1e-28
d2nyba182 a.2.11.1 (A:1-82) Fe superoxide dismutase (FeSOD) 2e-28
d1bsma186 a.2.11.1 (A:1-86) Cambialistic superoxide dismutas 7e-28
d1kkca184 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD) 1e-27
d1ma1a188 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) 7e-27
d2p4ka183 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) 4e-26
d1wb8a189 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) 4e-26
d1idsa184 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) 8e-26
d1coja189 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) 1e-25
d1unfx2134 d.44.1.1 (X:105-238) Fe superoxide dismutase (FeSO 1e-22
d1my6a2110 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD 7e-14
d1ma1a2113 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD 9e-14
d1gv3a2111 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSO 1e-13
d2nyba2110 d.44.1.1 (A:83-192) Fe superoxide dismutase (FeSOD 2e-13
d1wb8a2116 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD 3e-13
d1mnga2111 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD 3e-13
d1y67a2116 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD 4e-13
d1jr9a2111 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD 1e-12
d1idsa2114 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD 3e-12
d1ix9a2115 d.44.1.1 (A:91-205) Mn superoxide dismutase (MnSOD 5e-12
d1bsma2115 d.44.1.1 (A:87-201) Cambialistic superoxide dismut 7e-12
d1coja2122 d.44.1.1 (A:91-212) Fe superoxide dismutase (FeSOD 7e-12
d1uera2107 d.44.1.1 (A:85-191) Cambialistic superoxide dismut 1e-11
d2p4ka2115 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD 1e-11
d1p7ga2119 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSO 1e-11
d1dt0a2114 d.44.1.1 (A:84-197) Fe superoxide dismutase (FeSOD 1e-11
d1kkca2116 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD 9e-11
>d1unfx1 a.2.11.1 (X:14-104) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Length = 91 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Fe,Mn superoxide dismutase (SOD), N-terminal domain
family: Fe,Mn superoxide dismutase (SOD), N-terminal domain
domain: Fe superoxide dismutase (FeSOD)
species: Cowpea (Vigna unguiculata) [TaxId: 3917]

 Score =  121 bits (304), Expect = 2e-36
 Identities = 70/92 (76%), Positives = 83/92 (90%), Gaps = 1/92 (1%)

Query: 45  RISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDV 104
           +++AKF+LKPPPYPLN LEP MS+ TLEFHWGKHHR YV+NL KQ+VGTEL DGKSLE++
Sbjct: 1   KVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTEL-DGKSLEEI 59

Query: 105 VIASYNKGDLLPAFNNAAQAWNHDFFWESMKP 136
           ++ +YNKGD+LPAFNNAAQ WNHDFFWE MKP
Sbjct: 60  IVTAYNKGDILPAFNNAAQVWNHDFFWECMKP 91
>d1jr9a1 a.2.11.1 (A:2-91) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Length = 90 Back     information, alignment and structure
>d1gv3a1 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Length = 102 Back     information, alignment and structure
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Length = 90 Back     information, alignment and structure
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Length = 88 Back     information, alignment and structure
>d1mnga1 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Length = 92 Back     information, alignment and structure
>d1uera1 a.2.11.1 (A:1-84) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Length = 84 Back     information, alignment and structure
>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 92 Back     information, alignment and structure
>d2nyba1 a.2.11.1 (A:1-82) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Length = 82 Back     information, alignment and structure
>d1bsma1 a.2.11.1 (A:1-86) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Length = 86 Back     information, alignment and structure
>d1kkca1 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Length = 84 Back     information, alignment and structure
>d1ma1a1 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 88 Back     information, alignment and structure
>d2p4ka1 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1wb8a1 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 89 Back     information, alignment and structure
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 84 Back     information, alignment and structure
>d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Length = 89 Back     information, alignment and structure
>d1unfx2 d.44.1.1 (X:105-238) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Length = 134 Back     information, alignment and structure
>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Length = 110 Back     information, alignment and structure
>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 113 Back     information, alignment and structure
>d1gv3a2 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Length = 111 Back     information, alignment and structure
>d2nyba2 d.44.1.1 (A:83-192) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Length = 110 Back     information, alignment and structure
>d1wb8a2 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 116 Back     information, alignment and structure
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Length = 111 Back     information, alignment and structure
>d1y67a2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Deinococcus radiodurans [TaxId: 1299]} Length = 116 Back     information, alignment and structure
>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Length = 111 Back     information, alignment and structure
>d1idsa2 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 114 Back     information, alignment and structure
>d1ix9a2 d.44.1.1 (A:91-205) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Length = 115 Back     information, alignment and structure
>d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Length = 115 Back     information, alignment and structure
>d1coja2 d.44.1.1 (A:91-212) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Length = 122 Back     information, alignment and structure
>d1uera2 d.44.1.1 (A:85-191) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Length = 107 Back     information, alignment and structure
>d2p4ka2 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 119 Back     information, alignment and structure
>d1dt0a2 d.44.1.1 (A:84-197) Fe superoxide dismutase (FeSOD) {Pseudomonas ovalis [TaxId: 303]} Length = 114 Back     information, alignment and structure
>d1kkca2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
d1unfx191 Fe superoxide dismutase (FeSOD) {Cowpea (Vigna ung 100.0
d1uera184 Cambialistic superoxide dismutase {Porphyromonas g 100.0
d1my6a188 Fe superoxide dismutase (FeSOD) {Thermosynechococc 100.0
d1mnga192 Mn superoxide dismutase (MnSOD) {Thermus thermophi 100.0
d2nyba182 Fe superoxide dismutase (FeSOD) {Escherichia coli 99.98
d1gv3a1102 Mn superoxide dismutase (MnSOD) {Anabaena sp. [Tax 99.98
d1jr9a190 Mn superoxide dismutase (MnSOD) {Bacillus halodeni 99.97
d1p7ga192 Fe superoxide dismutase (FeSOD) {Archaeon Pyrobacu 99.97
d1ix9a190 Mn superoxide dismutase (MnSOD) {Escherichia coli 99.97
d1bsma186 Cambialistic superoxide dismutase {Propionibacteri 99.96
d1kkca184 Mn superoxide dismutase (MnSOD) {Aspergillus fumig 99.96
d2p4ka183 Mn superoxide dismutase (MnSOD) {Human (Homo sapie 99.96
d1ma1a188 Fe superoxide dismutase (FeSOD) {Archaeon Methanob 99.96
d1idsa184 Fe superoxide dismutase (FeSOD) {Mycobacterium tub 99.96
d1wb8a189 Fe superoxide dismutase (FeSOD) {Archaeon Sulfolob 99.96
d1coja189 Fe superoxide dismutase (FeSOD) {Aquifex pyrophilu 99.87
d1wb8a2116 Fe superoxide dismutase (FeSOD) {Archaeon Sulfolob 99.84
d1mnga2111 Mn superoxide dismutase (MnSOD) {Thermus thermophi 99.84
d1gv3a2111 Mn superoxide dismutase (MnSOD) {Anabaena sp. [Tax 99.84
d1ma1a2113 Fe superoxide dismutase (FeSOD) {Archaeon Methanob 99.83
d1my6a2110 Fe superoxide dismutase (FeSOD) {Thermosynechococc 99.82
d1unfx2134 Fe superoxide dismutase (FeSOD) {Cowpea (Vigna ung 99.82
d2nyba2110 Fe superoxide dismutase (FeSOD) {Escherichia coli 99.81
d1uera2107 Cambialistic superoxide dismutase {Porphyromonas g 99.81
d1dt0a2114 Fe superoxide dismutase (FeSOD) {Pseudomonas ovali 99.79
d1jr9a2111 Mn superoxide dismutase (MnSOD) {Bacillus halodeni 99.79
d1idsa2114 Fe superoxide dismutase (FeSOD) {Mycobacterium tub 99.79
d1p7ga2119 Fe superoxide dismutase (FeSOD) {Archaeon Pyrobacu 99.79
d1bsma2115 Cambialistic superoxide dismutase {Propionibacteri 99.78
d1ix9a2115 Mn superoxide dismutase (MnSOD) {Escherichia coli 99.78
d2p4ka2115 Mn superoxide dismutase (MnSOD) {Human (Homo sapie 99.75
d1y67a2116 Mn superoxide dismutase (MnSOD) {Deinococcus radio 99.75
d1kkca2116 Mn superoxide dismutase (MnSOD) {Aspergillus fumig 99.71
d1coja2122 Fe superoxide dismutase (FeSOD) {Aquifex pyrophilu 99.7
>d1unfx1 a.2.11.1 (X:14-104) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Fe,Mn superoxide dismutase (SOD), N-terminal domain
family: Fe,Mn superoxide dismutase (SOD), N-terminal domain
domain: Fe superoxide dismutase (FeSOD)
species: Cowpea (Vigna unguiculata) [TaxId: 3917]

Probab=100.00  E-value=3.3e-35  Score=221.63  Aligned_cols=91  Identities=77%  Similarity=1.436  Sum_probs=82.7

Q ss_pred             ceecceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCChHHHHHHhhcCCCcchhhcchhhh
Q 027081           45 RISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQA  124 (228)
Q Consensus        45 ~~~~~~~lP~LpY~~~~LeP~IS~~tl~~Hy~khh~~YV~nLN~~l~~t~~~~~~sl~~ii~~~~~~~~~~~ifN~ag~~  124 (228)
                      +++++|+||+|||+|++|||+||++||++||+|||++||++||+++++++. +++++++++...........+||||||+
T Consensus         1 ~~~~kf~Lp~LPY~y~aLeP~Is~~tm~~H~~KHH~~YV~~lN~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~Nn~gg~   79 (91)
T d1unfx1           1 KVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTEL-DGKSLEEIIVTAYNKGDILPAFNNAAQV   79 (91)
T ss_dssp             CCSSSCCCCCCSSCTTTTTTTSCHHHHHHHTTTHHHHHHHHHHHHC--CTT-TTCCHHHHHHHHHGGGSCCTHHHHHHHH
T ss_pred             CCcceeeCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhchHHHHHHHhhccccHHHHHhcchhH
Confidence            367889999999999999999999999999999999999999999999888 8899999998777666666899999999


Q ss_pred             hhhHhhhcccCC
Q 027081          125 WNHDFFWESMKP  136 (228)
Q Consensus       125 ~NH~fFw~~L~P  136 (228)
                      |||+|||++|+|
T Consensus        80 ~NHslfW~~m~P   91 (91)
T d1unfx1          80 WNHDFFWECMKP   91 (91)
T ss_dssp             HHHHHHHHTBCT
T ss_pred             hhHHHHHhccCc
Confidence            999999999987
>d1uera1 a.2.11.1 (A:1-84) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d1mnga1 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nyba1 a.2.11.1 (A:1-82) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gv3a1 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Back     information, alignment and structure
>d1jr9a1 a.2.11.1 (A:2-91) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Back     information, alignment and structure
>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bsma1 a.2.11.1 (A:1-86) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Back     information, alignment and structure
>d1kkca1 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d2p4ka1 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ma1a1 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1wb8a1 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Back     information, alignment and structure
>d1wb8a2 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gv3a2 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Back     information, alignment and structure
>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d1unfx2 d.44.1.1 (X:105-238) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Back     information, alignment and structure
>d2nyba2 d.44.1.1 (A:83-192) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uera2 d.44.1.1 (A:85-191) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1dt0a2 d.44.1.1 (A:84-197) Fe superoxide dismutase (FeSOD) {Pseudomonas ovalis [TaxId: 303]} Back     information, alignment and structure
>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Back     information, alignment and structure
>d1idsa2 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Back     information, alignment and structure
>d1ix9a2 d.44.1.1 (A:91-205) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p4ka2 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y67a2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1kkca2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d1coja2 d.44.1.1 (A:91-212) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Back     information, alignment and structure